APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 SUPERFAMILY SSF48173 196 469 9.81E-99 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Pfam PF00875 DNA photolyase 6 165 4.5E-48 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Gene3D G3DSA:3.40.50.620 3 144 3.3E-49 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 SUPERFAMILY SSF52425 4 164 1.31E-51 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 324 336 - T 06-07-2017 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Gene3D G3DSA:1.25.40.80 203 283 8.6E-39 T 06-07-2017 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Gene3D G3DSA:1.25.40.80 145 162 8.6E-39 T 06-07-2017 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 PRINTS PR00147 DNA photolyase signature 344 362 3.8E-30 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 PRINTS PR00147 DNA photolyase signature 141 157 3.8E-30 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 PRINTS PR00147 DNA photolyase signature 383 397 3.8E-30 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 PRINTS PR00147 DNA photolyase signature 324 340 3.8E-30 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Pfam PF03441 FAD binding domain of DNA photolyase 275 466 1.4E-73 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08730 f8a15d8a68e16a7754520f8d26e65250 478 Gene3D G3DSA:1.10.579.10 284 467 1.0E-66 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF52172 814 953 8.82E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:1.20.120.620 26 125 1.9E-16 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:1.10.287.130 561 620 6.6E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF55785 268 398 5.06E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00387 681 794 3.8E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 417 549 2.4E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 308 406 1.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 256 1.5E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:3.40.50.2300 813 953 8.5E-31 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00388 569 635 4.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF55785 136 244 2.27E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF13493 Domain of unknown function (DUF4118) 29 131 3.5E-23 T 06-07-2017 IPR025201 Sensor protein KdpD, transmembrane domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF08447 PAS fold 308 394 3.5E-12 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF55785 396 537 2.79E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00448 815 947 2.2E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:3.30.450.20 407 540 5.2E-19 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF55874 624 795 1.57E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 681 793 1.4E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00091 143 211 2.1E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00091 281 351 5.4 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00091 419 485 0.003 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF13426 PAS domain 430 541 2.6E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF13426 PAS domain 155 255 4.5E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:3.30.450.20 265 406 1.9E-30 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:3.30.565.10 621 793 2.5E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 732 6.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 753 771 6.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 791 6.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF00072 Response regulator receiver domain 817 882 5.3E-13 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00086 357 400 2.0E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00086 499 542 0.033 T 06-07-2017 IPR001610 PAC motif APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SMART SM00086 225 262 220.0 T 06-07-2017 IPR001610 PAC motif APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 SUPERFAMILY SSF47384 556 636 1.63E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Gene3D G3DSA:3.30.450.20 137 254 9.9E-16 T 06-07-2017 APT55_RS30870 d4211b0462cee45ce48ce5cfe45ea7d0 955 Pfam PF00512 His Kinase A (phospho-acceptor) domain 570 634 4.6E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00388 532 600 3.8E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF158472 208 258 1.05E-11 T 06-07-2017 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 696 2.5E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 PRINTS PR00344 Bacterial sensor protein C-terminal signature 700 710 2.5E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 PRINTS PR00344 Bacterial sensor protein C-terminal signature 741 754 2.5E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 PRINTS PR00344 Bacterial sensor protein C-terminal signature 717 735 2.5E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 645 754 1.9E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF00672 HAMP domain 191 257 1.6E-15 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF05227 CHASE3 domain 40 175 2.2E-34 T 06-07-2017 IPR007891 CHASE3 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00387 645 757 2.7E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:3.30.565.10 602 759 6.4E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00065 285 429 6.9E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:3.40.50.2300 1060 1181 2.6E-43 T 06-07-2017 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:3.40.50.2300 797 907 3.5E-26 T 06-07-2017 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF47384 517 600 1.96E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF00072 Response regulator receiver domain 920 1028 9.8E-17 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF00072 Response regulator receiver domain 798 903 3.7E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF00072 Response regulator receiver domain 1065 1177 7.0E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:3.30.450.40 260 420 8.0E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:1.10.287.130 523 596 4.8E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF13185 GAF domain 284 419 1.3E-16 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF52172 1057 1181 1.99E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Pfam PF00512 His Kinase A (phospho-acceptor) domain 533 600 2.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF55874 589 759 2.1E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF52172 796 907 7.83E-25 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00448 795 905 5.0E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00448 917 1031 8.0E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00448 1063 1177 5.6E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF55781 249 419 1.47E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 Gene3D G3DSA:3.40.50.2300 917 1039 1.1E-22 T 06-07-2017 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SMART SM00304 208 261 1.0E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS24425 b0ca2114a8897de180b01a0452c3a489 1183 SUPERFAMILY SSF52172 917 1041 1.42E-20 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01105 2d32fdfe213db7feb6d9e32d62b4a3ac 600 Pfam PF01432 Peptidase family M3 206 573 7.3E-38 T 06-07-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 APT55_RS01105 2d32fdfe213db7feb6d9e32d62b4a3ac 600 Pfam PF08439 Oligopeptidase F 118 173 7.7E-10 T 06-07-2017 IPR013647 Oligopeptidase F, N-terminal domain APT55_RS01105 2d32fdfe213db7feb6d9e32d62b4a3ac 600 Gene3D G3DSA:3.40.390.10 349 425 7.4E-5 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 APT55_RS01105 2d32fdfe213db7feb6d9e32d62b4a3ac 600 SUPERFAMILY SSF55486 13 583 6.48E-88 T 06-07-2017 APT55_RS30160 ca4dd328945c26e0b17ad8aca55cc4b2 158 Gene3D G3DSA:1.10.1660.10 5 74 0.001 T 06-07-2017 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 SUPERFAMILY SSF53335 465 653 1.07E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 13 137 3.6E-17 T 06-07-2017 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Gene3D G3DSA:3.40.50.150 474 673 3.9E-10 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08820 3e065cf022097f95fab69b061497f280 720 SUPERFAMILY SSF52540 10 241 2.25E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Gene3D G3DSA:1.10.3710.10 347 431 6.1E-25 T 06-07-2017 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Gene3D G3DSA:1.10.8.60 152 219 1.4E-7 T 06-07-2017 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 SMART SM00382 46 163 4.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Gene3D G3DSA:1.20.272.10 247 345 1.1E-44 T 06-07-2017 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 SUPERFAMILY SSF48019 250 427 3.32E-67 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Pfam PF16193 AAA C-terminal domain 186 265 4.3E-27 T 06-07-2017 IPR032423 AAA ATPase, C-terminal domain APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Gene3D G3DSA:3.40.50.300 8 151 2.5E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08820 3e065cf022097f95fab69b061497f280 720 Pfam PF12002 MgsA AAA+ ATPase C terminal 266 428 3.4E-65 T 06-07-2017 IPR021886 MgsA AAA+ ATPase C-terminal APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 SUPERFAMILY SSF50800 76 173 1.92E-27 T 06-07-2017 IPR011037 Pyruvate kinase-like, insert domain APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 8 473 3.9E-170 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Gene3D G3DSA:3.50.30.10 494 587 4.4E-25 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Gene3D G3DSA:3.40.1380.20 331 473 1.9E-45 T 06-07-2017 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 249 273 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 318 334 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 274 298 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 222 248 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 65 81 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 192 206 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 PRINTS PR01050 Pyruvate kinase family signature 299 317 1.7E-68 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Pfam PF00224 Pyruvate kinase, barrel domain 8 343 1.2E-125 T 06-07-2017 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Gene3D G3DSA:2.40.33.10 79 173 2.5E-30 T 06-07-2017 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 470 9.3E-32 T 06-07-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Pfam PF00391 PEP-utilising enzyme, mobile domain 504 575 2.3E-20 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 ProSitePatterns PS00110 Pyruvate kinase active site signature. 220 232 - T 06-07-2017 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 SUPERFAMILY SSF52935 328 473 9.94E-38 T 06-07-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 SUPERFAMILY SSF52009 468 581 1.57E-25 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 SUPERFAMILY SSF51621 3 80 1.71E-100 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 SUPERFAMILY SSF51621 162 346 1.71E-100 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Gene3D G3DSA:3.20.20.60 8 78 1.3E-99 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS00385 29edcb18b55c692a3baa883e2c33beff 593 Gene3D G3DSA:3.20.20.60 174 330 1.3E-99 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 SUPERFAMILY SSF51206 11 139 8.38E-33 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 PRINTS PR00103 cAMP-dependent protein kinase signature 77 86 1.5E-6 T 06-07-2017 APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 PRINTS PR00103 cAMP-dependent protein kinase signature 89 100 1.5E-6 T 06-07-2017 APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 PRINTS PR00103 cAMP-dependent protein kinase signature 52 66 1.5E-6 T 06-07-2017 APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 PRINTS PR00103 cAMP-dependent protein kinase signature 37 51 1.5E-6 T 06-07-2017 APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 79 96 - T 06-07-2017 IPR018488 Cyclic nucleotide-binding, conserved site APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 SMART SM00100 16 129 1.3E-22 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 Gene3D G3DSA:2.60.120.10 11 140 9.3E-34 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS12910 c1d962f0420cffbbb575dbd93b0a1063 158 Pfam PF00027 Cyclic nucleotide-binding domain 35 116 6.6E-20 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF50952 1082 1147 1.7E-22 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF50952 719 809 1.7E-22 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF50952 885 1043 1.7E-22 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Gene3D G3DSA:2.120.10.30 724 858 1.2E-79 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Gene3D G3DSA:2.120.10.30 894 1144 1.2E-79 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF14252 Domain of unknown function (DUF4347) 38 199 1.1E-52 T 06-07-2017 IPR025592 Domain of unknown function DUF4347 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF07995 Glucose / Sorbosone dehydrogenase 737 815 1.1E-5 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF07995 Glucose / Sorbosone dehydrogenase 898 1135 4.0E-26 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SMART SM00237 478 589 2.2E-11 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SMART SM00237 602 702 1.7E-26 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF141072 495 612 1.7E-26 T 06-07-2017 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF07691 PA14 domain 203 335 2.5E-32 T 06-07-2017 IPR011658 PA14 domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF07691 PA14 domain 352 482 2.9E-30 T 06-07-2017 IPR011658 PA14 domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF141072 615 725 8.5E-34 T 06-07-2017 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF56988 351 502 6.41E-53 T 06-07-2017 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF03160 Calx-beta domain 499 586 9.1E-15 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Pfam PF03160 Calx-beta domain 604 702 1.3E-20 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SUPERFAMILY SSF56988 202 341 1.05E-53 T 06-07-2017 APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SMART SM00758 350 485 3.1E-30 T 06-07-2017 IPR011658 PA14 domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 SMART SM00758 201 336 1.3E-33 T 06-07-2017 IPR011658 PA14 domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Gene3D G3DSA:3.90.182.10 348 547 1.6E-53 T 06-07-2017 IPR011658 PA14 domain APT55_RS25640 4fed9e96811ab69e97b1d53b5c2dcfbd 1149 Gene3D G3DSA:3.90.182.10 200 342 5.9E-54 T 06-07-2017 IPR011658 PA14 domain APT55_RS06715 6b8fccda9c6437c8df4809b2757de527 337 PIRSF PIRSF018005 3 337 5.8E-130 T 06-07-2017 IPR017804 Methyltransferase EgtD-like APT55_RS06715 6b8fccda9c6437c8df4809b2757de527 337 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 207 331 7.0E-47 T 06-07-2017 IPR019257 Histidine-specific methyltransferase, SAM-dependent APT55_RS06715 6b8fccda9c6437c8df4809b2757de527 337 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 33 334 2.4E-121 T 06-07-2017 IPR017804 Methyltransferase EgtD-like APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:3.30.2090.10 191 292 2.6E-7 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82714 192 260 3.66E-7 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:1.10.3850.10 300 528 2.6E-45 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:1.10.3850.10 843 1059 1.4E-56 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:3.30.2090.10 751 838 1.3E-19 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82693 599 683 2.75E-7 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:3.30.70.1430 49 147 3.2E-20 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82714 752 837 1.44E-18 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82693 49 143 2.09E-19 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Pfam PF00873 AcrB/AcrD/AcrF family 13 1059 1.1E-301 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 384 405 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 412 436 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 357 380 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 584 601 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 1.9E-23 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82693 144 190 8.89E-17 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82693 293 351 8.89E-17 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 Gene3D G3DSA:3.30.70.1430 600 682 9.5E-6 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82866 315 526 5.75E-32 T 06-07-2017 APT55_RS05905 ffcd4eb2d45bb88680b0f31928187ef7 1093 SUPERFAMILY SSF82866 836 1060 7.06E-48 T 06-07-2017 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 SUPERFAMILY SSF50993 25 441 4.71E-107 T 06-07-2017 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 Gene3D G3DSA:3.40.50.1820 443 704 9.4E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 537 567 - T 06-07-2017 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 SUPERFAMILY SSF53474 444 688 7.78E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 476 494 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 549 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 502 526 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 560 580 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 615 630 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 634 656 9.7E-57 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 31 434 2.9E-126 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 Pfam PF00326 Prolyl oligopeptidase family 491 705 8.7E-69 T 06-07-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT55_RS12055 e0700f6de056d478df8fb80d774e6718 706 Gene3D G3DSA:2.130.10.120 97 437 4.9E-120 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 2.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 2.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 2.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 2.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 Gene3D G3DSA:3.40.50.1820 4 274 1.1E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00412 Epoxide hydrolase signature 35 53 1.0E-11 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00412 Epoxide hydrolase signature 116 129 1.0E-11 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00412 Epoxide hydrolase signature 249 271 1.0E-11 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 PRINTS PR00412 Epoxide hydrolase signature 55 70 1.0E-11 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 Pfam PF12697 Alpha/beta hydrolase family 31 266 4.7E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15545 ea8e30edf3945179098be161e3d05261 277 SUPERFAMILY SSF53474 4 274 1.59E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 Hamap MF_00163 Peptide deformylase [def]. 3 172 27.3 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 SUPERFAMILY SSF56420 5 172 2.75E-54 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 Pfam PF01327 Polypeptide deformylase 6 159 2.5E-50 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 Gene3D G3DSA:3.90.45.10 6 172 4.2E-55 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 PIRSF PIRSF004749 1 175 2.7E-50 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 PRINTS PR01576 Peptide deformylase signature 35 64 7.9E-29 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 PRINTS PR01576 Peptide deformylase signature 99 110 7.9E-29 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 PRINTS PR01576 Peptide deformylase signature 130 159 7.9E-29 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 PRINTS PR01576 Peptide deformylase signature 111 129 7.9E-29 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS15215 e884b2189a0d97ed45d0f7447fd87501 175 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 170 3.4E-41 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS31350 2996c2e7c72d9a6d0591fc57592ed709 293 Gene3D G3DSA:3.40.50.450 113 264 1.3E-12 T 06-07-2017 APT55_RS31350 2996c2e7c72d9a6d0591fc57592ed709 293 SUPERFAMILY SSF102405 81 292 1.05E-32 T 06-07-2017 APT55_RS31350 2996c2e7c72d9a6d0591fc57592ed709 293 Pfam PF02481 DNA recombination-mediator protein A 77 282 1.4E-58 T 06-07-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 APT55_RS20005 76f2cb2ade8af79ed198608084cab291 344 Pfam PF00795 Carbon-nitrogen hydrolase 20 286 1.5E-28 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS20005 76f2cb2ade8af79ed198608084cab291 344 SUPERFAMILY SSF56317 44 289 2.75E-41 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS20005 76f2cb2ade8af79ed198608084cab291 344 Gene3D G3DSA:3.60.110.10 15 304 2.0E-42 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Gene3D G3DSA:3.40.190.10 179 266 7.4E-11 T 06-07-2017 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.2E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.2E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.2E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Gene3D G3DSA:3.40.190.10 441 561 1.7E-4 T 06-07-2017 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 6.7E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 SUPERFAMILY SSF53850 91 283 2.21E-29 T 06-07-2017 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 SUPERFAMILY SSF53850 370 594 4.19E-18 T 06-07-2017 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Pfam PF03466 LysR substrate binding domain 88 284 5.9E-27 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Gene3D G3DSA:1.10.10.10 1 87 6.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 SUPERFAMILY SSF46785 1 86 1.28E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Gene3D G3DSA:3.40.190.10 88 178 4.6E-14 T 06-07-2017 APT55_RS25430 b32a99be8add541bea5d0567b635d3d3 652 Pfam PF13379 NMT1-like family 382 582 1.1E-7 T 06-07-2017 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 Gene3D G3DSA:3.30.420.40 2 222 1.4E-21 T 06-07-2017 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 221 1.9E-13 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 Gene3D G3DSA:3.30.420.40 228 407 8.6E-7 T 06-07-2017 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 SUPERFAMILY SSF53067 1 221 1.43E-33 T 06-07-2017 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 406 9.6E-5 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT55_RS18840 0ebfae629f769875f1a284f5bbba7a59 410 SUPERFAMILY SSF53067 229 408 3.11E-15 T 06-07-2017 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 Gene3D G3DSA:1.25.40.10 3 76 1.3E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 SMART SM00028 3 36 0.24 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 SMART SM00028 421 454 28.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 SUPERFAMILY SSF48452 3 112 6.07E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 SUPERFAMILY SSF48452 185 233 6.07E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 Gene3D G3DSA:1.25.40.10 420 465 9.3E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 Gene3D G3DSA:1.25.40.10 164 234 9.3E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02770 0d75121dc247793056692ab89efebd56 466 SUPERFAMILY SSF48452 380 465 1.06E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SUPERFAMILY SSF52200 3 114 5.75E-28 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Gene3D G3DSA:2.130.10.10 301 590 1.1E-113 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 813 827 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 365 379 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 324 338 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 772 786 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 570 584 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 PRINTS PR00320 G protein beta WD-40 repeat signature 365 379 1.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 PRINTS PR00320 G protein beta WD-40 repeat signature 570 584 1.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 PRINTS PR00320 G protein beta WD-40 repeat signature 772 786 1.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF13676 TIR domain 4 107 1.9E-24 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SUPERFAMILY SSF50978 302 584 1.28E-95 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 462 501 3.7E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 624 663 8.0E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 503 542 2.7E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 421 460 4.0E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 746 785 6.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 298 337 3.5E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 787 826 3.0E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 544 583 5.3E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 828 869 2.3E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 706 744 5.8E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 665 704 2.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 585 622 0.016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 339 378 1.4E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00320 380 419 5.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 691 705 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Gene3D G3DSA:2.130.10.10 598 732 1.4E-42 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Gene3D G3DSA:2.130.10.10 733 873 6.3E-55 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 488 502 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 447 461 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SMART SM00255 1 130 1.9E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 SUPERFAMILY SSF50978 598 871 2.32E-78 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 731 745 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 304 337 1.2E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 788 826 3.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 504 542 1.8E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 666 704 9.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 381 419 4.3E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 422 460 6.0E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 463 501 8.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 340 378 1.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 829 869 8.5E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 707 744 1.0E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 545 583 8.0E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 747 785 9.6E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF00400 WD domain, G-beta repeat 628 663 0.016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Gene3D G3DSA:3.40.50.10140 3 109 6.2E-22 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 Pfam PF07676 WD40-like Beta Propeller Repeat 595 610 0.17 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 529 543 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS03405 9c9360f6136d5d72b560ee3725866403 923 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 406 420 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 SUPERFAMILY SSF49493 223 308 8.76E-22 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 Pfam PF01556 DnaJ C terminal domain 160 297 1.5E-31 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 SUPERFAMILY SSF46565 3 88 6.28E-31 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 Gene3D G3DSA:2.60.260.20 221 298 9.8E-20 T 06-07-2017 APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 SMART SM00271 5 63 1.4E-28 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 Gene3D G3DSA:2.60.260.20 154 218 4.6E-10 T 06-07-2017 APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 Gene3D G3DSA:1.10.287.110 4 84 6.0E-31 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 PRINTS PR00625 DnaJ domain signature 43 63 2.3E-26 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 PRINTS PR00625 DnaJ domain signature 26 41 2.3E-26 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 PRINTS PR00625 DnaJ domain signature 63 82 2.3E-26 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 PRINTS PR00625 DnaJ domain signature 8 26 2.3E-26 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 Pfam PF00226 DnaJ domain 6 68 7.0E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06600 2cb6c61f01d780e35a5dbbc32db697bf 325 SUPERFAMILY SSF49493 154 226 4.71E-13 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 779 793 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 Gene3D G3DSA:2.130.10.10 970 1151 6.6E-52 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SUPERFAMILY SSF50978 1049 1154 3.11E-15 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00931 NB-ARC domain 110 310 2.8E-10 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 737 751 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 Gene3D G3DSA:1.10.260.40 21 74 6.3E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 612 626 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1072 1086 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 711 750 4.9E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 544 583 0.69 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 963 1002 1.1E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 795 834 8.0E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 922 960 1.2E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 669 708 8.8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 1046 1085 7.0E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 879 919 1.7E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 753 792 1.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 628 665 9.9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 586 625 8.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 1005 1044 5.7E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SMART SM00320 837 876 1.4E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 863 877 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1031 1045 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 SUPERFAMILY SSF52540 88 355 2.36E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31545 63c3071969f89a75628823156835e443 1183 SUPERFAMILY SSF50998 540 808 4.63E-62 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS31545 63c3071969f89a75628823156835e443 1183 Gene3D G3DSA:3.40.50.300 97 247 4.1E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00364 Disease resistance protein signature 119 134 4.6E-7 T 06-07-2017 APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00364 Disease resistance protein signature 192 206 4.6E-7 T 06-07-2017 APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00364 Disease resistance protein signature 298 312 4.6E-7 T 06-07-2017 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00805 Pentapeptide repeats (8 copies) 514 551 6.1E-4 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 755 792 5.8E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 591 625 1.7E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 1049 1085 1.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 881 919 3.7E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 713 750 0.16 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 1006 1044 2.1E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 923 956 0.0037 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 965 1002 1.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 796 834 4.7E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Pfam PF00400 WD domain, G-beta repeat 838 876 0.14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 SUPERFAMILY SSF50978 753 1046 2.56E-94 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 989 1003 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 Gene3D G3DSA:2.130.10.10 740 969 2.1E-85 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 Gene3D G3DSA:2.130.10.10 549 739 1.2E-48 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31545 63c3071969f89a75628823156835e443 1183 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 821 835 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00320 G protein beta WD-40 repeat signature 779 793 3.5E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00320 G protein beta WD-40 repeat signature 1072 1086 3.5E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31545 63c3071969f89a75628823156835e443 1183 PRINTS PR00320 G protein beta WD-40 repeat signature 612 626 3.5E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31545 63c3071969f89a75628823156835e443 1183 SUPERFAMILY SSF141571 515 552 4.32E-5 T 06-07-2017 APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 Gene3D G3DSA:3.40.50.300 104 351 1.5E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 5 350 2.5E-154 T 06-07-2017 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 SMART SM00382 124 258 1.1E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 SUPERFAMILY SSF52540 4 341 1.68E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 195 209 - T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS12510 5f9c9230be72a20cc35becaa7b457796 369 Pfam PF00437 Type II/IV secretion system protein 43 265 3.3E-42 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 Gene3D G3DSA:1.25.10.10 18 188 3.0E-26 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 143 173 430.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 30 61 7.7E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 70 99 3.7E-7 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 175 209 92.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 211 240 270.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SMART SM00567 E-Z type HEAT repeats 101 130 5.9E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 SUPERFAMILY SSF48371 19 229 8.64E-23 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 Pfam PF13646 HEAT repeats 72 129 2.7E-12 T 06-07-2017 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 Pfam PF03130 PBS lyase HEAT-like repeat 32 60 1.0E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13440 156fd5790d811614e743b3ceb427acd3 278 Pfam PF03130 PBS lyase HEAT-like repeat 149 171 0.079 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS29580 2cf62be68402864db150ee0055069a7f 213 Gene3D G3DSA:1.20.5.170 119 149 5.3E-4 T 06-07-2017 APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 SUPERFAMILY SSF46565 9 85 3.01E-14 T 06-07-2017 IPR001623 DnaJ domain APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 Gene3D G3DSA:1.25.40.10 192 265 8.3E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 Pfam PF00226 DnaJ domain 17 81 1.8E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 Pfam PF07719 Tetratricopeptide repeat 229 261 4.3E-5 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 Gene3D G3DSA:1.10.287.110 15 84 4.4E-14 T 06-07-2017 IPR001623 DnaJ domain APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 SMART SM00271 15 79 5.0E-8 T 06-07-2017 IPR001623 DnaJ domain APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 SMART SM00028 194 227 0.77 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 SMART SM00028 228 261 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS02020 d47f42b018d3adddc8a395145cbe1e8d 310 SUPERFAMILY SSF48452 183 269 4.43E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05440 14c6da14870e1f31711719875754ec8f 363 Gene3D G3DSA:3.40.50.150 22 143 2.7E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05440 14c6da14870e1f31711719875754ec8f 363 SUPERFAMILY SSF53335 3 359 1.24E-84 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05440 14c6da14870e1f31711719875754ec8f 363 Pfam PF02005 N2,N2-dimethylguanosine tRNA methyltransferase 12 357 1.1E-69 T 06-07-2017 IPR002905 tRNA methyltransferase, Trm1 GO:0003723|GO:0004809|GO:0008033 KEGG: 00680+2.1.1.21|MetaCyc: PWY-6829|MetaCyc: PWY-6965 APT55_RS10820 d0b64be6afb71f184e8c2f5b0092ff99 489 Pfam PF00656 Caspase domain 5 231 9.3E-20 T 06-07-2017 APT55_RS10820 d0b64be6afb71f184e8c2f5b0092ff99 489 SUPERFAMILY SSF52129 6 200 3.03E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS10820 d0b64be6afb71f184e8c2f5b0092ff99 489 Gene3D G3DSA:3.40.50.1460 5 96 3.4E-7 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF47384 830 913 4.12E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF00072 Response regulator receiver domain 1119 1230 2.8E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:1.10.287.130 841 909 4.3E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF00512 His Kinase A (phospho-acceptor) domain 848 910 1.6E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.450.40 185 352 4.3E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.450.40 38 173 2.6E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55781 201 347 2.84E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00448 1117 1230 1.9E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 522 636 1.1E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 385 515 4.4E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 959 1090 3.9E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00065 38 181 1.1E-5 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00065 198 345 0.0072 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00065 672 835 3.0E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.450.20 373 505 3.6E-18 T 06-07-2017 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.450.20 506 628 9.4E-25 T 06-07-2017 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55785 373 506 2.27E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF08448 PAS fold 394 510 6.4E-7 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1051 1069 9.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1034 1044 9.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1016 1030 9.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1076 1089 9.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF01590 GAF domain 678 825 1.5E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF01590 GAF domain 39 167 8.0E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55874 902 1091 3.8E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.40.50.2300 1115 1238 1.7E-34 T 06-07-2017 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55781 39 182 3.08E-24 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00091 516 582 1.1E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00091 388 457 1.6 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55781 678 837 2.14E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00086 588 630 1.4E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00086 466 508 5.5E-6 T 06-07-2017 IPR001610 PAC motif APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00388 847 913 3.1E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF55785 505 628 2.27E-24 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Pfam PF13426 PAS domain 526 629 6.6E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SUPERFAMILY SSF52172 1116 1237 4.27E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.565.10 914 1093 2.7E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 SMART SM00387 959 1092 1.6E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30880 55d723db84340579655e4e1dea6e222f 1240 Gene3D G3DSA:3.30.450.40 664 832 1.9E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00500 442ab9c734edf7faf5c3f05ce3709c86 192 Gene3D G3DSA:2.30.110.10 2 192 1.1E-58 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS00500 442ab9c734edf7faf5c3f05ce3709c86 192 TIGRFAM TIGR04026 PPOX_FMN_cyano: PPOX class probable FMN-dependent enzyme, alr4036 family 3 192 4.0E-73 T 06-07-2017 IPR024015 Pyridoxamine 5'-phosphate oxidase, probable FMN-dependent, Alr4036 family KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282 APT55_RS00500 442ab9c734edf7faf5c3f05ce3709c86 192 Pfam PF12766 Pyridoxamine 5'-phosphate oxidase 4 96 1.7E-29 T 06-07-2017 IPR024624 Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domain GO:0010181 APT55_RS00500 442ab9c734edf7faf5c3f05ce3709c86 192 SUPERFAMILY SSF50475 2 192 5.02E-37 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Gene3D G3DSA:2.130.10.10 580 783 5.6E-69 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 1033 1070 3.0E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 991 1030 2.5E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 662 701 9.5E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 867 906 3.0E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 908 947 4.6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 826 865 2.3E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 703 742 3.0E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 1113 1152 6.0E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 621 660 1.7E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 949 989 0.024 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 580 619 1.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 785 824 2.3E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 744 783 2.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SMART SM00320 1072 1111 2.7E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Gene3D G3DSA:2.130.10.10 785 975 9.0E-53 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SUPERFAMILY SSF50978 585 905 4.85E-90 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF14516 AAA-like domain 29 275 2.2E-30 T 06-07-2017 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Gene3D G3DSA:2.130.10.10 976 1159 3.8E-66 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 968 1053 1.1E-8 T 06-07-2017 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1139 1153 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 PRINTS PR00320 G protein beta WD-40 repeat signature 1139 1153 8.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 PRINTS PR00320 G protein beta WD-40 repeat signature 1057 1071 8.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 PRINTS PR00320 G protein beta WD-40 repeat signature 1098 1112 8.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SUPERFAMILY SSF52540 23 275 2.2E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 669 700 6.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 623 660 7.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 1116 1152 4.2E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 829 864 1.2E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 1074 1111 2.3E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 786 823 4.7E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 871 906 1.7E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 587 618 1.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 706 741 8.2E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Pfam PF00400 WD domain, G-beta repeat 746 782 4.8E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 Gene3D G3DSA:3.40.50.300 59 195 6.7E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05025 65eecd61e013aa983975609e88a3074b 1197 SUPERFAMILY SSF50978 871 1158 8.06E-71 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1163 1569 1.6E-136 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1282 1293 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.40.50.980 3 157 2.5E-34 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF00501 AMP-binding enzyme 1142 1545 2.8E-102 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF00501 AMP-binding enzyme 3 444 4.1E-88 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF47336 580 690 1.7E-17 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF56801 2 546 7.59E-114 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:1.10.1200.10 574 659 8.8E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF00550 Phosphopantetheine attachment site 1656 1719 2.9E-11 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF00550 Phosphopantetheine attachment site 587 653 1.5E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.30.300.30 435 541 6.2E-14 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF47336 1646 1720 3.8E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF56801 1098 1667 7.33E-164 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF52777 680 857 6.11E-48 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.40.50.980 1292 1445 3.0E-40 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.40.50.980 158 316 2.8E-36 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:1.10.1200.10 1658 1724 1.4E-25 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF13193 AMP-binding enzyme C-terminal domain 1553 1626 8.0E-12 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.30.300.30 1540 1657 1.6E-45 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 ProSitePatterns PS00455 Putative AMP-binding domain signature. 151 162 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF13745 HxxPF-repeated domain 999 1087 9.5E-33 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:2.30.38.10 355 434 2.7E-19 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:3.40.50.980 1135 1291 9.5E-58 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Pfam PF00668 Condensation domain 677 976 1.5E-80 T 06-07-2017 IPR001242 Condensation domain APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SMART SM00823 Phosphopantetheine attachment site 586 657 1.5E-14 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SMART SM00823 Phosphopantetheine attachment site 1654 1723 3.8E-4 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 SUPERFAMILY SSF52777 865 1104 3.78E-68 T 06-07-2017 APT55_RS30745 dcb35e54a20f080e002b7f801fbaa041 1754 Gene3D G3DSA:2.30.38.10 1455 1535 1.4E-27 T 06-07-2017 APT55_RS20020 22073a891adde3d5bb89e2a5ec5020b6 157 Gene3D G3DSA:3.30.1060.10 1 152 1.9E-69 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS20020 22073a891adde3d5bb89e2a5ec5020b6 157 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 34.307 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS20020 22073a891adde3d5bb89e2a5ec5020b6 157 SUPERFAMILY SSF55068 1 149 4.84E-67 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS20020 22073a891adde3d5bb89e2a5ec5020b6 157 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 151 5.3E-61 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS20020 22073a891adde3d5bb89e2a5ec5020b6 157 Pfam PF01625 Peptide methionine sulfoxide reductase 3 151 3.0E-61 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 SUPERFAMILY SSF48264 14 443 3.54E-86 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00385 P450 superfamily signature 390 401 9.4E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00385 P450 superfamily signature 381 390 9.4E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00385 P450 superfamily signature 308 319 9.4E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00385 P450 superfamily signature 261 278 9.4E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 Pfam PF00067 Cytochrome P450 10 429 2.5E-70 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00463 E-class P450 group I signature 348 372 4.8E-14 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00463 E-class P450 group I signature 390 413 4.8E-14 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00463 E-class P450 group I signature 69 88 4.8E-14 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 PRINTS PR00463 E-class P450 group I signature 380 390 4.8E-14 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 Gene3D G3DSA:1.10.630.10 7 443 8.9E-91 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS30625 f46db54604cbcddcaff502473488d098 443 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 383 392 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 254 1.1E-128 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 Pfam PF00005 ABC transporter 25 166 6.1E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 Gene3D G3DSA:3.40.50.300 4 216 1.3E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 Gene3D G3DSA:3.40.190.10 377 504 3.7E-12 T 06-07-2017 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 SUPERFAMILY SSF52540 5 226 3.92E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 SUPERFAMILY SSF53850 278 516 9.05E-36 T 06-07-2017 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 Pfam PF13379 NMT1-like family 277 525 1.3E-89 T 06-07-2017 APT55_RS12110 e024e1e6b058ecbcbd640b5879ea27b2 672 SMART SM00382 34 216 2.2E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Pfam PF00571 CBS domain 376 429 2.0E-11 T 06-07-2017 IPR000644 CBS domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Pfam PF00571 CBS domain 313 367 2.1E-11 T 06-07-2017 IPR000644 CBS domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SUPERFAMILY SSF81891 619 877 5.1E-38 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Gene3D G3DSA:1.10.3090.10 617 825 8.7E-24 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SUPERFAMILY SSF81301 450 617 4.25E-28 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Gene3D G3DSA:3.90.1640.10 3 181 3.5E-23 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SUPERFAMILY SSF64182 3 297 1.57E-42 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Pfam PF01743 Poly A polymerase head domain 474 620 4.5E-33 T 06-07-2017 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SMART SM00116 383 430 2.9E-14 T 06-07-2017 IPR000644 CBS domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SMART SM00116 320 368 1.4E-11 T 06-07-2017 IPR000644 CBS domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Pfam PF01368 DHH family 3 145 3.6E-7 T 06-07-2017 IPR001667 DDH domain APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 SUPERFAMILY SSF54631 311 431 1.77E-33 T 06-07-2017 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Gene3D G3DSA:3.20.20.70 300 429 2.5E-37 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS02520 80cc1a4df4732d7ea6c65608d5508bce 881 Gene3D G3DSA:3.30.460.10 453 616 2.1E-36 T 06-07-2017 APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 SMART SM00079 53 279 0.0014 T 06-07-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 54 278 5.4E-46 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 SMART SM00062 53 280 1.1E-40 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 Gene3D G3DSA:3.40.190.10 239 279 4.9E-30 T 06-07-2017 APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 Gene3D G3DSA:3.40.190.10 51 129 4.9E-30 T 06-07-2017 APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 SUPERFAMILY SSF53850 51 279 7.21E-49 T 06-07-2017 APT55_RS04505 560865ed1b3fe93fca030da82437e4d0 297 Gene3D G3DSA:3.40.190.10 130 237 8.1E-17 T 06-07-2017 APT55_RS19485 dc61fd13f56c2fc7391e4faeaa41c5bf 72 SUPERFAMILY SSF143100 5 66 5.23E-15 T 06-07-2017 APT55_RS19485 dc61fd13f56c2fc7391e4faeaa41c5bf 72 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 5 69 1.7E-6 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 117 1.7E-32 T 06-07-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 Pfam PF00436 Single-strand binding protein family 3 102 2.1E-27 T 06-07-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 PIRSF PIRSF002070 1 121 3.2E-30 T 06-07-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 Gene3D G3DSA:2.40.50.140 1 116 8.5E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 Hamap MF_00984 Single-stranded DNA-binding protein. 3 106 30.627 T 06-07-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APT55_RS20155 163f72bd17915fc187bad248a8d7c46c 122 SUPERFAMILY SSF50249 1 119 4.28E-36 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 SUPERFAMILY SSF82679 26 147 3.79E-31 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 Pfam PF02357 Transcription termination factor nusG 27 141 5.3E-22 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 28 209 3.4E-58 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 Gene3D G3DSA:2.30.30.30 149 209 9.6E-25 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 ProSitePatterns PS01014 Transcription termination factor nusG signature. 192 201 - T 06-07-2017 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 SMART SM00738 25 145 1.0E-37 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 SUPERFAMILY SSF50104 124 209 9.03E-18 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 PRINTS PR00338 Transcription termination factor NUSG signature 185 201 1.6E-18 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 PRINTS PR00338 Transcription termination factor NUSG signature 167 182 1.6E-18 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 PRINTS PR00338 Transcription termination factor NUSG signature 81 93 1.6E-18 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 25 209 21.783 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 SMART SM00739 155 182 0.0018 T 06-07-2017 IPR005824 KOW APT55_RS17500 7c5318c829680a57e4b43741a6ade117 209 Gene3D G3DSA:3.30.70.940 27 148 1.2E-38 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT55_RS23565 d49099309becdb8b8c055d463067809a 698 SUPERFAMILY SSF56300 221 466 3.37E-38 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS23565 d49099309becdb8b8c055d463067809a 698 Gene3D G3DSA:3.60.21.10 265 459 1.1E-16 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS23565 d49099309becdb8b8c055d463067809a 698 SMART SM00854 221 453 1.0E-84 T 06-07-2017 IPR019079 Capsule synthesis protein, CapA APT55_RS23565 d49099309becdb8b8c055d463067809a 698 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 221 452 8.5E-72 T 06-07-2017 IPR019079 Capsule synthesis protein, CapA APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 SUPERFAMILY SSF48452 31 160 1.08E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 Pfam PF13432 Tetratricopeptide repeat 42 103 4.6E-9 T 06-07-2017 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 Gene3D G3DSA:1.25.40.10 29 161 2.4E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 SMART SM00028 35 68 0.001 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 SMART SM00028 106 153 15.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 SMART SM00028 72 105 1.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09675 c7e0f40575308c291c483372ce715afa 173 Hamap MF_00439 Photosystem I assembly protein Ycf3 [ycf3]. 1 168 43.466 T 06-07-2017 IPR022818 Photosystem I Ycf3, assembly APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.30.565.10 621 813 4.9E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00086 519 561 1.4 T 06-07-2017 IPR001610 PAC motif APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00086 398 440 1.0E-11 T 06-07-2017 IPR001610 PAC motif APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.30.450.40 27 170 7.1E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF55874 624 811 1.57E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 445 566 6.3E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 308 447 5.9E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 794 807 3.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 770 788 3.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 753 763 3.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 735 749 3.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF55781 27 169 3.27E-23 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF47384 554 636 6.28E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00387 679 810 8.6E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF55785 323 448 2.37E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.30.450.20 297 437 1.7E-24 T 06-07-2017 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:1.10.287.130 560 620 1.6E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00448 836 947 2.2E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00448 958 1072 2.9E-13 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF08447 PAS fold 472 531 9.1E-11 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.30.450.20 438 559 1.0E-23 T 06-07-2017 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF52172 954 1080 1.99E-23 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00388 567 635 3.4E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF08448 PAS fold 199 299 2.7E-9 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF00512 His Kinase A (phospho-acceptor) domain 567 635 9.4E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.40.50.2300 955 1080 4.8E-23 T 06-07-2017 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.40.50.2300 833 954 6.9E-31 T 06-07-2017 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF55785 181 271 1.61E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF00072 Response regulator receiver domain 838 947 7.0E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF00072 Response regulator receiver domain 960 1061 1.5E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00091 448 514 4.7E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00091 310 376 1.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00091 193 259 9.6E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF55785 437 559 9.18E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SUPERFAMILY SSF52172 837 951 6.55E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 680 807 1.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Pfam PF13426 PAS domain 322 439 1.1E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 SMART SM00065 21 168 9.2E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14085 36a5322a132fc125cbfe69d3417de8b7 1091 Gene3D G3DSA:3.30.450.20 187 296 1.6E-20 T 06-07-2017 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 SUPERFAMILY SSF75445 136 213 1.01E-24 T 06-07-2017 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 6 231 34.18 T 06-07-2017 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 Gene3D G3DSA:3.40.50.1360 9 148 3.6E-60 T 06-07-2017 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 Gene3D G3DSA:3.30.70.260 149 210 1.6E-28 T 06-07-2017 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 9 224 2.8E-78 T 06-07-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 56 223 6.3E-66 T 06-07-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT55_RS13925 665c78d91be1505deeb361a5d94bc62c 234 SUPERFAMILY SSF100950 9 155 2.93E-44 T 06-07-2017 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 189 215 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 Hamap MF_01383 Photosystem II D2 protein [psbD]. 1 351 62.005 T 06-07-2017 IPR005868 Photosystem II D2 protein GO:0009523|GO:0015979|GO:0016020|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 TIGRFAM TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein) 1 351 8.4E-231 T 06-07-2017 IPR005868 Photosystem II D2 protein GO:0009523|GO:0015979|GO:0016020|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 107 135 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 140 162 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 195 221 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 SUPERFAMILY SSF81483 14 350 4.32E-127 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 Gene3D G3DSA:1.20.85.10 10 185 3.1E-49 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 Pfam PF00124 Photosynthetic reaction centre protein 27 316 2.1E-75 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS11970 1543b67255a000e49ec1de90744c6b3d 351 Gene3D G3DSA:1.20.85.10 189 320 8.5E-31 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 189 215 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 Hamap MF_01383 Photosystem II D2 protein [psbD]. 1 351 62.005 T 06-07-2017 IPR005868 Photosystem II D2 protein GO:0009523|GO:0015979|GO:0016020|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 TIGRFAM TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein) 1 351 8.4E-231 T 06-07-2017 IPR005868 Photosystem II D2 protein GO:0009523|GO:0015979|GO:0016020|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 107 135 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 140 162 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 195 221 3.9E-9 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 SUPERFAMILY SSF81483 14 350 4.32E-127 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 Gene3D G3DSA:1.20.85.10 10 185 3.1E-49 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 Pfam PF00124 Photosynthetic reaction centre protein 27 316 2.1E-75 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS21085 1543b67255a000e49ec1de90744c6b3d 351 Gene3D G3DSA:1.20.85.10 189 320 8.5E-31 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 340 346 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF56784 490 745 9.59E-60 T 06-07-2017 IPR023214 HAD-like domain APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF56784 336 356 9.59E-60 T 06-07-2017 IPR023214 HAD-like domain APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Gene3D G3DSA:3.40.1110.10 328 542 7.2E-56 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Gene3D G3DSA:1.20.1110.10 611 901 1.5E-112 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Gene3D G3DSA:1.20.1110.10 69 122 1.5E-112 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SMART SM00831 16 90 1.4E-30 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Pfam PF00702 haloacid dehalogenase-like hydrolase 335 656 6.9E-19 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Pfam PF00690 Cation transporter/ATPase, N-terminus 17 84 9.5E-18 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Gene3D G3DSA:2.70.150.10 27 68 2.3E-44 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Gene3D G3DSA:2.70.150.10 123 238 2.3E-44 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 732 4.5E-37 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 96 359 7.6E-46 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF81653 129 238 2.62E-31 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Pfam PF00689 Cation transporting ATPase, C-terminus 727 897 5.3E-45 T 06-07-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 642 658 6.3E-16 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 614 630 6.3E-16 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 493 511 6.3E-16 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 674 699 6.3E-16 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 Pfam PF00122 E1-E2 ATPase 95 329 1.6E-64 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 535 546 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 338 352 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 557 567 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 666 678 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 642 661 2.2E-42 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF81660 345 539 1.83E-51 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF81665 692 901 2.88E-126 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF81665 16 128 2.88E-126 T 06-07-2017 APT55_RS07110 17b0bcbac35f367f5f0859a76e24f5e8 904 SUPERFAMILY SSF81665 239 332 2.88E-126 T 06-07-2017 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 28 503 3.3E-159 T 06-07-2017 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 PRINTS PR00095 Anthranilate synthase component I signature 352 365 1.6E-21 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.6E-21 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 PRINTS PR00095 Anthranilate synthase component I signature 432 446 1.6E-21 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 PRINTS PR00095 Anthranilate synthase component I signature 447 461 1.6E-21 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 168 1.3E-27 T 06-07-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 SUPERFAMILY SSF56322 17 503 2.09E-159 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 Pfam PF00425 chorismate binding enzyme 230 495 7.0E-95 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal APT55_RS16495 ebb004e1abe2518c43cadd20450061af 508 Gene3D G3DSA:3.60.120.10 14 505 3.9E-170 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 150 166 - T 06-07-2017 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 SUPERFAMILY SSF51735 5 180 1.47E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 164 323 7.6E-24 T 06-07-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 Gene3D G3DSA:3.30.360.10 164 320 1.9E-57 T 06-07-2017 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 SUPERFAMILY SSF55347 155 320 1.64E-52 T 06-07-2017 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 9 146 1.1E-32 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 SMART SM00859 8 147 8.5E-52 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 Gene3D G3DSA:3.40.50.720 5 163 1.1E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 8 352 1.1E-132 T 06-07-2017 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS11995 85429b205be4acc51b2c53f02b226949 352 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 7 346 42.838 T 06-07-2017 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 Hamap MF_00600 60 kDa chaperonin [groL]. 1 546 41.414 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 4.5E-251 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 Gene3D G3DSA:3.50.7.10 187 366 1.2E-93 T 06-07-2017 IPR027409 GroEL-like apical domain APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 Gene3D G3DSA:1.10.560.10 367 517 1.3E-41 T 06-07-2017 IPR027413 GroEL-like equatorial domain APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 SUPERFAMILY SSF52029 183 374 3.29E-80 T 06-07-2017 IPR027409 GroEL-like apical domain APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 PRINTS PR00298 60kDa chaperonin signature 396 417 8.8E-72 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 PRINTS PR00298 60kDa chaperonin signature 266 289 8.8E-72 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 PRINTS PR00298 60kDa chaperonin signature 348 373 8.8E-72 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 PRINTS PR00298 60kDa chaperonin signature 26 52 8.8E-72 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 PRINTS PR00298 60kDa chaperonin signature 82 109 8.8E-72 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 Gene3D G3DSA:1.10.560.10 7 186 2.0E-43 T 06-07-2017 IPR027413 GroEL-like equatorial domain APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 SUPERFAMILY SSF48592 1 226 5.63E-63 T 06-07-2017 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 523 3.7E-102 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 APT55_RS14040 6e902aa38ae9e286e5ae5a12bc48aa90 555 SUPERFAMILY SSF48592 317 524 7.94E-35 T 06-07-2017 APT55_RS31830 504c11fb2c1fb598b442afe7ce80d54c 447 Gene3D G3DSA:2.40.50.100 223 259 5.2E-12 T 06-07-2017 APT55_RS31830 504c11fb2c1fb598b442afe7ce80d54c 447 Gene3D G3DSA:2.40.50.100 91 123 5.2E-12 T 06-07-2017 APT55_RS31830 504c11fb2c1fb598b442afe7ce80d54c 447 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 83 308 1.5E-9 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS31830 504c11fb2c1fb598b442afe7ce80d54c 447 SUPERFAMILY SSF111369 101 356 4.58E-6 T 06-07-2017 APT55_RS31830 504c11fb2c1fb598b442afe7ce80d54c 447 SUPERFAMILY SSF56954 50 209 8.5E-7 T 06-07-2017 APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 Gene3D G3DSA:3.50.30.60 163 291 4.7E-42 T 06-07-2017 IPR027461 LD-carboxypeptidase A, C-terminal domain APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 PIRSF PIRSF028757 6 296 4.6E-61 T 06-07-2017 IPR003507 Peptidase family S66 APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 SUPERFAMILY SSF52317 3 164 1.14E-41 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 SUPERFAMILY SSF141986 140 292 1.7E-40 T 06-07-2017 IPR027461 LD-carboxypeptidase A, C-terminal domain APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 Pfam PF02016 LD-carboxypeptidase 17 286 6.0E-76 T 06-07-2017 IPR003507 Peptidase family S66 APT55_RS14915 0892a54cdade481982042dacb78dd8ac 302 Gene3D G3DSA:3.40.50.10740 3 162 4.0E-62 T 06-07-2017 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain APT55_RS21940 1faca5036c827dd5f18555b54566ef9b 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 128 9.483 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS21940 1faca5036c827dd5f18555b54566ef9b 132 Pfam PF01850 PIN domain 3 124 2.9E-12 T 06-07-2017 IPR002716 PIN domain APT55_RS21940 1faca5036c827dd5f18555b54566ef9b 132 SUPERFAMILY SSF88723 1 131 2.21E-28 T 06-07-2017 IPR029060 PIN domain-like APT55_RS21940 1faca5036c827dd5f18555b54566ef9b 132 Gene3D G3DSA:3.40.50.1010 1 131 2.3E-33 T 06-07-2017 IPR029060 PIN domain-like APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 SUPERFAMILY SSF52402 2 150 9.21E-37 T 06-07-2017 APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 PRINTS PR01438 Universal stress protein signature 128 150 7.0E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 PRINTS PR01438 Universal stress protein signature 2 20 7.0E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 PRINTS PR01438 Universal stress protein signature 110 122 7.0E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 PIRSF PIRSF006276 1 152 5.8E-18 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 Pfam PF00582 Universal stress protein family 1 148 2.4E-34 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS06660 028148c46a95a0580bd192e776f58b2d 168 Gene3D G3DSA:3.40.50.620 1 149 2.6E-40 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Gene3D G3DSA:2.70.150.10 162 330 1.3E-30 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Gene3D G3DSA:3.30.70.100 13 95 6.0E-21 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Pfam PF00122 E1-E2 ATPase 197 447 8.4E-62 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF81665 193 230 2.75E-7 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF81665 331 373 2.75E-7 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF81665 400 450 2.75E-7 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF81665 699 733 2.75E-7 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 597 607 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 280 294 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 673 685 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 456 470 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 575 586 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 650 669 4.3E-28 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 398 728 2.9E-64 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 199 372 8.7E-20 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF55008 10 83 1.83E-18 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 458 464 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Pfam PF00702 haloacid dehalogenase-like hydrolase 453 664 1.5E-46 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 ProSitePatterns PS01047 Heavy-metal-associated domain. 20 49 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Gene3D G3DSA:3.40.50.1000 578 719 7.9E-57 T 06-07-2017 IPR023214 HAD-like domain APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Gene3D G3DSA:3.40.50.1000 428 471 7.9E-57 T 06-07-2017 IPR023214 HAD-like domain APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF56784 454 474 4.58E-58 T 06-07-2017 IPR023214 HAD-like domain APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF56784 508 757 4.58E-58 T 06-07-2017 IPR023214 HAD-like domain APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 759 1.3E-192 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Gene3D G3DSA:3.40.1110.10 472 577 1.3E-16 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 681 706 1.2E-8 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 650 666 1.2E-8 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 SUPERFAMILY SSF81653 243 330 5.49E-26 T 06-07-2017 APT55_RS14885 f35d3a7066b637c8fa5b8d9b3b9af652 769 Pfam PF00403 Heavy-metal-associated domain 17 76 1.2E-11 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Pfam PF00140 Sigma-70 factor, region 1.2 65 97 2.1E-12 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 139 374 1.0E-115 T 06-07-2017 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 PRINTS PR00046 Major sigma-70 factor signature 191 199 2.2E-30 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 PRINTS PR00046 Major sigma-70 factor signature 314 326 2.2E-30 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 PRINTS PR00046 Major sigma-70 factor signature 335 350 2.2E-30 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 PRINTS PR00046 Major sigma-70 factor signature 167 180 2.2E-30 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 PRINTS PR00046 Major sigma-70 factor signature 350 361 2.2E-30 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 139 363 2.0E-40 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Pfam PF04539 Sigma-70 region 3 222 297 1.8E-26 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 335 361 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 SUPERFAMILY SSF88659 273 373 1.64E-28 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Pfam PF04545 Sigma-70, region 4 310 363 2.7E-21 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 2 375 30.51 T 06-07-2017 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Pfam PF04542 Sigma-70 region 2 143 213 8.1E-23 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family 65 362 4.6E-129 T 06-07-2017 IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 SUPERFAMILY SSF88946 61 213 9.26E-58 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Gene3D G3DSA:1.10.10.10 216 266 6.9E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Gene3D G3DSA:1.10.601.10 48 97 3.5E-57 T 06-07-2017 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Gene3D G3DSA:1.10.601.10 135 212 3.5E-57 T 06-07-2017 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 167 180 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 SUPERFAMILY SSF88659 216 289 8.28E-19 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04555 f8eb827e395545e9ee15e9ddf8204e42 375 Gene3D G3DSA:1.10.10.10 304 374 4.7E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Pfam PF00072 Response regulator receiver domain 31 105 5.7E-10 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Gene3D G3DSA:1.10.287.130 154 224 6.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Gene3D G3DSA:3.30.565.10 229 386 1.2E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Pfam PF00512 His Kinase A (phospho-acceptor) domain 163 225 7.1E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Gene3D G3DSA:3.40.50.2300 18 131 1.8E-13 T 06-07-2017 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 SUPERFAMILY SSF47384 150 228 4.9E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 SUPERFAMILY SSF55874 217 384 1.7E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 SMART SM00387 274 386 1.3E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 325 8.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 383 8.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 339 8.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 363 8.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 274 385 1.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 SUPERFAMILY SSF52172 21 130 1.42E-12 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS00390 08497494a2d5fca537f7f6d24c3dd880 389 SMART SM00388 162 228 3.3E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08435 581965c53c50d06a2e1c3d51ef378357 141 SMART SM00507 8 63 2.3E-4 T 06-07-2017 IPR003615 HNH nuclease APT55_RS08435 581965c53c50d06a2e1c3d51ef378357 141 Pfam PF14279 HNH endonuclease 21 70 6.6E-11 T 06-07-2017 IPR029471 HNH endonuclease 5 APT55_RS21105 afaf6d58c486427eb6ac559e638295a5 74 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 48 3.6E-7 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 APT55_RS21105 afaf6d58c486427eb6ac559e638295a5 74 Gene3D G3DSA:2.10.260.10 1 62 1.0E-7 T 06-07-2017 APT55_RS21105 afaf6d58c486427eb6ac559e638295a5 74 SMART SM00966 7 52 1.9E-5 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 APT55_RS21105 afaf6d58c486427eb6ac559e638295a5 74 SUPERFAMILY SSF89447 4 61 3.49E-10 T 06-07-2017 APT55_RS21105 afaf6d58c486427eb6ac559e638295a5 74 TIGRFAM TIGR02609 doc_partner: putative addiction module antidote 4 74 1.3E-20 T 06-07-2017 IPR013432 Putative addiction module antidote APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Pfam PF08448 PAS fold 145 252 3.3E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 587 707 1.1E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Pfam PF13188 PAS domain 20 70 8.1E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SUPERFAMILY SSF55785 122 249 9.34E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:3.30.450.20 16 57 1.3E-5 T 06-07-2017 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 685 8.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 664 8.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 650 8.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 PRINTS PR00344 Bacterial sensor protein C-terminal signature 692 705 8.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SUPERFAMILY SSF55874 517 706 2.49E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:3.30.450.20 257 382 5.7E-23 T 06-07-2017 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:3.30.565.10 528 708 1.7E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00086 342 384 5.6E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00086 209 251 160.0 T 06-07-2017 IPR001610 PAC motif APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00387 582 708 1.8E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Pfam PF00512 His Kinase A (phospho-acceptor) domain 434 530 3.1E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00388 434 531 1.3E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 134 257 3.5E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 267 390 2.1E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:1.10.287.130 498 527 6.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:1.10.287.130 430 460 6.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SUPERFAMILY SSF55785 257 382 1.34E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SUPERFAMILY SSF47384 429 469 1.94E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SUPERFAMILY SSF47384 499 530 1.94E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00091 15 80 6.8 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00091 137 203 4.3E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 SMART SM00091 270 336 2.4E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Pfam PF00989 PAS fold 271 381 3.3E-13 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS12900 dfffa8580a243ee7843ca19484630c83 712 Gene3D G3DSA:3.30.450.20 122 249 5.8E-19 T 06-07-2017 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 PIRSF PIRSF000446 1 292 3.7E-97 T 06-07-2017 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 279 6.6E-101 T 06-07-2017 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 SUPERFAMILY SSF55048 123 179 1.96E-12 T 06-07-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 290 5.3E-41 T 06-07-2017 IPR020801 Polyketide synthase, acyl transferase domain APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 Pfam PF00698 Acyl transferase domain 6 277 1.8E-44 T 06-07-2017 IPR014043 Acyl transferase APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 Gene3D G3DSA:3.40.366.10 185 287 1.3E-67 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 Gene3D G3DSA:3.40.366.10 2 119 1.3E-67 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 Gene3D G3DSA:3.30.70.250 122 184 6.9E-16 T 06-07-2017 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 SUPERFAMILY SSF52151 178 291 2.88E-70 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS20640 84b744abcd649ec59e322d3ccbbb1d3b 292 SUPERFAMILY SSF52151 4 119 2.88E-70 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 SMART SM00829 14 310 3.4E-9 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 Gene3D G3DSA:3.40.50.720 148 245 1.5E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 Pfam PF00107 Zinc-binding dehydrogenase 149 256 5.0E-12 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 SUPERFAMILY SSF50129 12 131 1.26E-21 T 06-07-2017 IPR011032 GroES-like APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 Gene3D G3DSA:3.90.180.10 19 147 2.5E-25 T 06-07-2017 IPR011032 GroES-like APT55_RS18810 6b7d1e3e485d29c2d986d7211cef513c 314 SUPERFAMILY SSF51735 111 284 3.23E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 SUPERFAMILY SSF51161 24 189 1.39E-54 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 Gene3D G3DSA:1.10.3130.10 21 80 1.4E-27 T 06-07-2017 APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 Gene3D G3DSA:2.160.10.10 81 228 7.2E-37 T 06-07-2017 APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 27 187 2.3E-73 T 06-07-2017 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 PIRSF PIRSF000441 20 236 3.2E-79 T 06-07-2017 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 138 171 3.3E-7 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 129 1.2E-4 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS11640 2cd10a7639cb168338c4f3d75a4dd661 237 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 147 175 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 SMART SM00387 257 369 7.6E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 Gene3D G3DSA:3.30.565.10 201 368 3.3E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 259 366 5.7E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 Pfam PF00512 His Kinase A (phospho-acceptor) domain 148 213 8.1E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 SUPERFAMILY SSF47384 130 213 2.35E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 347 4.7E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 322 4.7E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 4.7E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 366 4.7E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 SMART SM00388 147 214 9.9E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 SUPERFAMILY SSF55874 204 367 1.17E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28360 b73c6b1a07c521b4b69ec9815114f066 370 Gene3D G3DSA:1.10.287.130 141 200 4.2E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SUPERFAMILY SSF47384 298 329 1.96E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SUPERFAMILY SSF47384 222 268 1.96E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Gene3D G3DSA:3.30.450.20 176 216 7.1E-5 T 06-07-2017 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Gene3D G3DSA:3.30.450.20 64 175 2.8E-13 T 06-07-2017 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Pfam PF08448 PAS fold 72 191 5.6E-7 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SMART SM00388 233 330 0.0035 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SUPERFAMILY SSF55785 62 188 6.98E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 434 2.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 448 2.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 2.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 2.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SMART SM00387 375 491 1.6E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 329 1.7E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 64 102 3.4E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Gene3D G3DSA:3.30.565.10 332 489 3.7E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 376 489 1.2E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 SUPERFAMILY SSF55874 329 489 2.49E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Gene3D G3DSA:1.10.287.130 297 326 8.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19380 0e2c35b4bfa2aa9c07723d523492479e 506 Gene3D G3DSA:1.10.287.130 233 259 8.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 Gene3D G3DSA:3.40.190.10 184 272 5.8E-20 T 06-07-2017 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 SUPERFAMILY SSF53850 95 309 3.01E-44 T 06-07-2017 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 Pfam PF03466 LysR substrate binding domain 94 301 2.5E-46 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.8E-23 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 Gene3D G3DSA:3.40.190.10 95 183 8.2E-18 T 06-07-2017 APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 Gene3D G3DSA:1.10.10.10 7 92 5.5E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS21830 ff349c1fcc58ed8e7aaf8b73125c15cc 340 SUPERFAMILY SSF46785 4 115 1.0E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 Gene3D G3DSA:1.10.10.10 154 214 1.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 SMART SM00448 10 123 5.0E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 Gene3D G3DSA:3.40.50.2300 7 133 4.3E-42 T 06-07-2017 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 SMART SM00421 153 210 2.7E-24 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 5.3E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 5.3E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 5.3E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 SUPERFAMILY SSF46894 150 214 2.82E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 Pfam PF00072 Response regulator receiver domain 13 123 9.6E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 SUPERFAMILY SSF52172 6 134 3.13E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02190 c222f3810bd1958633c07cf698e13a57 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 4.4E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 06-07-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Pfam PF00108 Thiolase, N-terminal domain 5 260 1.7E-70 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 SUPERFAMILY SSF53901 3 268 9.27E-74 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 PIRSF PIRSF000429 1 392 1.3E-130 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 SUPERFAMILY SSF53901 269 390 5.93E-44 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 06-07-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 3.7E-139 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Gene3D G3DSA:3.40.47.10 4 126 6.5E-64 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Gene3D G3DSA:3.40.47.10 185 273 6.5E-64 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Pfam PF02803 Thiolase, C-terminal domain 269 389 2.1E-49 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 06-07-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Gene3D G3DSA:3.40.47.10 145 184 1.4E-65 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS03475 1462e87356192bca11228bb2ef01ca3d 393 Gene3D G3DSA:3.40.47.10 275 390 1.4E-65 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 Gene3D G3DSA:1.10.1240.30 177 286 6.2E-54 T 06-07-2017 IPR017944 KaiA/RbsU helical domain GO:0006468 APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 SUPERFAMILY SSF52172 2 133 6.96E-17 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 Gene3D G3DSA:3.40.50.2300 2 170 3.0E-48 T 06-07-2017 APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 SMART SM01247 5 286 3.8E-148 T 06-07-2017 IPR011648 Circadian clock protein KaiA GO:0006468|GO:0007623 APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 SUPERFAMILY SSF101215 182 286 6.87E-49 T 06-07-2017 IPR017944 KaiA/RbsU helical domain GO:0006468 APT55_RS07445 06696cd5ce639ad50f89fb499ed93e86 287 Pfam PF07688 KaiA domain 7 286 9.4E-115 T 06-07-2017 IPR011648 Circadian clock protein KaiA GO:0006468|GO:0007623 APT55_RS00410 715cfb9f1d8a3551b63e87612394a7ae 635 Pfam PF13549 ATP-grasp domain 218 291 1.3E-7 T 06-07-2017 APT55_RS00410 715cfb9f1d8a3551b63e87612394a7ae 635 SUPERFAMILY SSF56059 392 475 5.79E-28 T 06-07-2017 APT55_RS00410 715cfb9f1d8a3551b63e87612394a7ae 635 SUPERFAMILY SSF56059 217 328 5.79E-28 T 06-07-2017 APT55_RS00410 715cfb9f1d8a3551b63e87612394a7ae 635 Gene3D G3DSA:3.30.470.20 400 457 2.4E-19 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS00410 715cfb9f1d8a3551b63e87612394a7ae 635 Gene3D G3DSA:3.30.470.20 214 339 2.4E-19 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS24040 cdf94e458a269c2ecec3a9a0359918ae 120 PIRSF PIRSF000260 1 120 1.2E-68 T 06-07-2017 IPR024707 Ferredoxin-thioredoxin reductase catalytic subunit, Cyanobacteria-type GO:0016730|GO:0055114 APT55_RS24040 cdf94e458a269c2ecec3a9a0359918ae 120 Pfam PF02943 Ferredoxin thioredoxin reductase catalytic beta chain 14 114 1.2E-42 T 06-07-2017 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 APT55_RS24040 cdf94e458a269c2ecec3a9a0359918ae 120 SUPERFAMILY SSF57662 12 117 1.83E-44 T 06-07-2017 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 APT55_RS24040 cdf94e458a269c2ecec3a9a0359918ae 120 Gene3D G3DSA:3.90.460.10 8 116 1.7E-49 T 06-07-2017 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 APT55_RS28670 ff3ee74c7c10c15f7f11598d29450e84 500 ProDom PD043187 TRANSPOSASE PLASMID CATALYTIC INTEGRASE DNA-BINDING DNA TRANSPOSITION RECOMBINATION FOR INSERTION 22 118 7.0E-19 T 06-07-2017 APT55_RS28670 ff3ee74c7c10c15f7f11598d29450e84 500 SUPERFAMILY SSF53098 140 298 2.15E-7 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS28670 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:3.30.420.10 154 300 3.5E-10 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS28670 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:1.10.260.40 23 56 6.3E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS28670 ff3ee74c7c10c15f7f11598d29450e84 500 Pfam PF00665 Integrase core domain 132 263 2.6E-10 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS31295 ff3ee74c7c10c15f7f11598d29450e84 500 ProDom PD043187 TRANSPOSASE PLASMID CATALYTIC INTEGRASE DNA-BINDING DNA TRANSPOSITION RECOMBINATION FOR INSERTION 22 118 7.0E-19 T 06-07-2017 APT55_RS31295 ff3ee74c7c10c15f7f11598d29450e84 500 SUPERFAMILY SSF53098 140 298 2.15E-7 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31295 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:3.30.420.10 154 300 3.5E-10 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31295 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:1.10.260.40 23 56 6.3E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31295 ff3ee74c7c10c15f7f11598d29450e84 500 Pfam PF00665 Integrase core domain 132 263 2.6E-10 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS31485 ff3ee74c7c10c15f7f11598d29450e84 500 ProDom PD043187 TRANSPOSASE PLASMID CATALYTIC INTEGRASE DNA-BINDING DNA TRANSPOSITION RECOMBINATION FOR INSERTION 22 118 7.0E-19 T 06-07-2017 APT55_RS31485 ff3ee74c7c10c15f7f11598d29450e84 500 SUPERFAMILY SSF53098 140 298 2.15E-7 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31485 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:3.30.420.10 154 300 3.5E-10 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31485 ff3ee74c7c10c15f7f11598d29450e84 500 Gene3D G3DSA:1.10.260.40 23 56 6.3E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31485 ff3ee74c7c10c15f7f11598d29450e84 500 Pfam PF00665 Integrase core domain 132 263 2.6E-10 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS02790 087dc99ec61862d4cbf3b26c23f1e0b8 279 SUPERFAMILY SSF55469 34 278 1.96E-66 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS02790 087dc99ec61862d4cbf3b26c23f1e0b8 279 Pfam PF00881 Nitroreductase family 137 192 2.5E-8 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS02790 087dc99ec61862d4cbf3b26c23f1e0b8 279 Pfam PF00881 Nitroreductase family 38 95 4.8E-11 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS02790 087dc99ec61862d4cbf3b26c23f1e0b8 279 PIRSF PIRSF005426 29 279 6.2E-88 T 06-07-2017 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 APT55_RS02790 087dc99ec61862d4cbf3b26c23f1e0b8 279 Gene3D G3DSA:3.40.109.10 36 278 6.9E-69 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 65 90 1.8E-53 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 260 283 1.8E-53 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 24 46 1.8E-53 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 50 63 1.8E-53 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 475 501 1.8E-53 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Pfam PF00141 Peroxidase 397 703 1.4E-38 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Pfam PF00141 Peroxidase 79 390 2.6E-49 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 SUPERFAMILY SSF48113 19 424 1.09E-156 T 06-07-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.420.10 303 402 1.7E-50 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.420.10 246 267 1.7E-50 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 ProSitePatterns PS00436 Peroxidases active site signature. 88 99 - T 06-07-2017 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 SUPERFAMILY SSF48113 425 730 7.37E-115 T 06-07-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.420.10 584 705 5.5E-45 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 252 262 - T 06-07-2017 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 20 731 0.0 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00458 Haem peroxidase superfamily signature 88 102 2.9E-20 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00458 Haem peroxidase superfamily signature 311 326 2.9E-20 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00458 Haem peroxidase superfamily signature 148 165 2.9E-20 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00458 Haem peroxidase superfamily signature 166 178 2.9E-20 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 PRINTS PR00458 Haem peroxidase superfamily signature 252 267 2.9E-20 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Hamap MF_01961 Catalase-peroxidase [katG]. 2 731 42.489 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.520.10 45 199 2.5E-72 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.520.10 427 583 2.5E-64 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.520.10 709 730 2.5E-64 T 06-07-2017 APT55_RS05260 6b9c08c864750beebb4b986de7a0a834 742 Gene3D G3DSA:1.10.520.10 232 245 2.5E-72 T 06-07-2017 APT55_RS06435 9d49a53298c65ede812bdac803aa47d2 119 SMART SM00530 10 65 1.9E-8 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06435 9d49a53298c65ede812bdac803aa47d2 119 SUPERFAMILY SSF47413 6 65 2.06E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06435 9d49a53298c65ede812bdac803aa47d2 119 Pfam PF13560 Helix-turn-helix domain 8 65 1.3E-8 T 06-07-2017 APT55_RS06435 9d49a53298c65ede812bdac803aa47d2 119 Gene3D G3DSA:1.10.260.40 8 65 1.6E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 650 668 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 SUPERFAMILY SSF51120 235 354 7.72E-10 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 SUPERFAMILY SSF51120 170 191 7.72E-10 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Gene3D G3DSA:2.150.10.10 204 351 9.3E-14 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Gene3D G3DSA:2.150.10.10 352 548 3.6E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Gene3D G3DSA:2.150.10.10 549 688 9.0E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Gene3D G3DSA:2.150.10.10 61 110 9.3E-14 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 672 687 0.05 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 486 501 1.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 80 89 33.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 384 394 5.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 464 481 1.2 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 653 670 0.0081 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 423 431 49.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 446 463 0.0069 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 254 270 1.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 285 300 1.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 237 250 0.57 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 SUPERFAMILY SSF51120 546 688 8.89E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR00313 NodO calcium binding signature 447 455 6.7E-8 T 06-07-2017 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR00313 NodO calcium binding signature 255 263 6.7E-8 T 06-07-2017 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR00313 NodO calcium binding signature 474 483 6.7E-8 T 06-07-2017 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR00313 NodO calcium binding signature 79 90 6.7E-8 T 06-07-2017 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 237 258 1.4E-6 T 06-07-2017 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 645 666 1.4E-6 T 06-07-2017 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 SUPERFAMILY SSF51120 382 560 3.14E-14 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13675 45637cdcb56e8afc3255d15bff214f33 690 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 659 677 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Pfam PF04539 Sigma-70 region 3 142 212 3.9E-17 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Pfam PF00140 Sigma-70 factor, region 1.2 4 32 1.8E-10 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 59 286 8.6E-31 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Pfam PF04545 Sigma-70, region 4 231 283 5.0E-11 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Gene3D G3DSA:1.10.601.10 4 132 3.9E-54 T 06-07-2017 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 SUPERFAMILY SSF88659 136 210 5.89E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 SUPERFAMILY SSF88946 4 132 3.14E-47 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Gene3D G3DSA:1.10.10.10 225 288 9.4E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Pfam PF04542 Sigma-70 region 2 63 132 9.0E-22 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 PRINTS PR00046 Major sigma-70 factor signature 256 271 8.6E-19 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 PRINTS PR00046 Major sigma-70 factor signature 271 282 8.6E-19 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 PRINTS PR00046 Major sigma-70 factor signature 87 100 8.6E-19 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 PRINTS PR00046 Major sigma-70 factor signature 234 246 8.6E-19 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 PRINTS PR00046 Major sigma-70 factor signature 111 119 8.6E-19 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 Gene3D G3DSA:1.10.10.10 136 184 1.2E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06680 dc215909cf8fd1d23b6b1474cef6c268 298 SUPERFAMILY SSF88659 195 288 3.55E-18 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 PRINTS PR00162 Rieske 2Fe-2S subunit signature 110 122 9.0E-9 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 PRINTS PR00162 Rieske 2Fe-2S subunit signature 98 110 9.0E-9 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 PRINTS PR00162 Rieske 2Fe-2S subunit signature 77 88 9.0E-9 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 Pfam PF00355 Rieske [2Fe-2S] domain 42 125 1.8E-15 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 SUPERFAMILY SSF50022 7 136 4.45E-25 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS12090 2878d3d73bc56d0fccd56ed26317025b 138 Gene3D G3DSA:2.102.10.10 1 136 1.7E-28 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS11630 49eb7c3a92e4ad913ac9f73ce14c466c 133 SUPERFAMILY SSF54862 5 57 5.87E-14 T 06-07-2017 APT55_RS11630 49eb7c3a92e4ad913ac9f73ce14c466c 133 Gene3D G3DSA:3.30.70.20 3 57 6.3E-13 T 06-07-2017 APT55_RS19995 45897ddfb128719fcb588e02024e7daf 151 SUPERFAMILY SSF50814 11 149 8.57E-7 T 06-07-2017 IPR011038 Calycin-like APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 Gene3D G3DSA:3.90.260.10 420 566 1.4E-15 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 Gene3D G3DSA:3.90.260.10 326 344 1.4E-15 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 Pfam PF11992 Domain of unknown function (DUF3488) 38 406 5.8E-13 T 06-07-2017 IPR021878 Protein of unknown function DUF3488 APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 SMART SM00460 493 564 4.8E-12 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 SUPERFAMILY SSF54001 431 680 3.92E-17 T 06-07-2017 APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 Pfam PF13559 Domain of unknown function (DUF4129) 665 729 4.3E-10 T 06-07-2017 IPR025403 Domain of unknown function DUF4129 APT55_RS14445 02ef6a70a87c73224c2aab45dc7069f1 741 Pfam PF01841 Transglutaminase-like superfamily 456 562 4.7E-18 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SUPERFAMILY SSF55073 509 629 1.96E-12 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Pfam PF01627 Hpt domain 259 346 2.0E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Pfam PF00990 Diguanylate cyclase, GGDEF domain 505 596 5.1E-10 T 06-07-2017 IPR000160 GGDEF domain APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SUPERFAMILY SSF47226 258 352 8.51E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SMART SM00448 376 489 1.5E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SMART SM00448 1 112 5.3E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SUPERFAMILY SSF52172 1 121 1.99E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SMART SM00862 144 219 7.8E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Pfam PF00072 Response regulator receiver domain 3 112 7.4E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Pfam PF00072 Response regulator receiver domain 378 489 1.2E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Gene3D G3DSA:1.20.120.160 251 353 3.9E-8 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 1.3E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Gene3D G3DSA:1.10.10.10 124 221 8.3E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Gene3D G3DSA:3.30.70.270 505 601 7.8E-12 T 06-07-2017 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SUPERFAMILY SSF46894 120 220 5.67E-26 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Gene3D G3DSA:3.40.50.2300 374 503 4.6E-35 T 06-07-2017 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 Gene3D G3DSA:3.40.50.2300 1 118 1.4E-38 T 06-07-2017 APT55_RS22220 e855df11382fc1f55270641f04629d67 632 SUPERFAMILY SSF52172 368 502 3.13E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS29065 103bf28ac69e82be96b8f1a887aebf50 333 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 301 5.6E-71 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS29065 103bf28ac69e82be96b8f1a887aebf50 333 SUPERFAMILY SSF53686 4 306 2.23E-91 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS29065 103bf28ac69e82be96b8f1a887aebf50 333 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APT55_RS29065 103bf28ac69e82be96b8f1a887aebf50 333 Gene3D G3DSA:3.40.50.1100 69 318 9.6E-69 T 06-07-2017 APT55_RS14485 e0834e5c0a8b904b00db8320a409c095 130 SUPERFAMILY SSF54593 1 125 5.24E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS14485 e0834e5c0a8b904b00db8320a409c095 130 Gene3D G3DSA:3.10.180.10 7 125 5.3E-17 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS14485 e0834e5c0a8b904b00db8320a409c095 130 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 101 2.6E-6 T 06-07-2017 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Gene3D G3DSA:3.30.450.20 42 170 1.7E-7 T 06-07-2017 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Gene3D G3DSA:1.10.287.130 242 304 1.5E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SMART SM00388 252 319 2.9E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SMART SM00387 363 473 3.9E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 319 7.1E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 471 1.3E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Pfam PF00672 HAMP domain 180 246 2.1E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SUPERFAMILY SSF47384 235 319 4.71E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SUPERFAMILY SSF55874 309 471 6.55E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SUPERFAMILY SSF158472 199 248 4.18E-6 T 06-07-2017 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 SMART SM00304 199 251 0.0053 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14395 1f317d6b00b3bcf8d9cde2b8844b8957 475 Gene3D G3DSA:3.30.565.10 305 472 1.1E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 SMART SM00448 2 115 5.6E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 Gene3D G3DSA:3.40.50.2300 1 127 1.2E-40 T 06-07-2017 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 216 3.2E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 204 3.2E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 188 3.2E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 SMART SM00421 171 228 1.5E-24 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 Gene3D G3DSA:1.10.10.10 160 229 2.3E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 SUPERFAMILY SSF46894 162 229 1.8E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 ProSitePatterns PS00622 LuxR-type HTH domain signature. 188 215 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 SUPERFAMILY SSF52172 1 130 2.85E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 Pfam PF00072 Response regulator receiver domain 4 115 6.7E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26405 63782d444adaf326fe13d2927b6ce0bf 236 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 228 1.8E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00448 934 1048 6.8E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00448 791 903 4.3E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00448 670 779 9.4E-13 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF47384 397 482 1.67E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 623 636 4.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 599 617 4.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 578 4.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 592 4.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF52172 793 909 2.28E-21 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00388 413 481 5.2E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF00072 Response regulator receiver domain 794 897 5.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF00072 Response regulator receiver domain 936 1048 3.4E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF00072 Response regulator receiver domain 673 778 1.8E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:1.10.287.130 405 466 7.2E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00387 528 639 2.5E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF55874 470 637 3.27E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:3.40.50.2300 792 926 5.4E-23 T 06-07-2017 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:3.40.50.2300 934 1053 5.3E-41 T 06-07-2017 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:3.40.50.2300 671 779 3.3E-18 T 06-07-2017 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SMART SM00065 192 338 0.0013 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 481 7.2E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF52172 931 1053 5.55E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:3.30.450.40 174 328 1.5E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Gene3D G3DSA:3.30.565.10 467 639 3.3E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF52172 672 783 1.85E-20 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 SUPERFAMILY SSF55781 162 328 7.46E-23 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 528 636 7.0E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07125 00e865dc0db45e76f6b19b7d102c2087 1054 Pfam PF13185 GAF domain 191 328 1.5E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 Pfam PF12697 Alpha/beta hydrolase family 36 285 3.3E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 Gene3D G3DSA:3.40.50.1820 11 292 8.8E-61 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 SUPERFAMILY SSF53474 10 291 1.64E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 4.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 4.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17795 a55fab0019c03f113b39f4524910dcee 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 4.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS01410 af3cbba07a6f66a96a63ca93c19eb560 341 Gene3D G3DSA:2.102.10.10 10 127 1.5E-29 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS01410 af3cbba07a6f66a96a63ca93c19eb560 341 SUPERFAMILY SSF50022 3 126 8.77E-34 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS01410 af3cbba07a6f66a96a63ca93c19eb560 341 SUPERFAMILY SSF55961 111 330 2.69E-21 T 06-07-2017 APT55_RS01410 af3cbba07a6f66a96a63ca93c19eb560 341 Pfam PF00355 Rieske [2Fe-2S] domain 11 92 1.0E-18 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 46 4.4E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 4.4E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 4.4E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 4.4E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 SUPERFAMILY SSF46785 13 95 5.19E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 Pfam PF01022 Bacterial regulatory protein, arsR family 22 67 9.8E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 SMART SM00418 14 95 4.3E-29 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS03560 f01ecfe0039e2f89a44bd8d333fe4574 109 Gene3D G3DSA:1.10.10.10 16 96 6.4E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01005 6bce7814a5e6ab4370eb9e566cb35619 167 Pfam PF01424 R3H domain 100 158 4.5E-14 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS01005 6bce7814a5e6ab4370eb9e566cb35619 167 Gene3D G3DSA:3.30.1370.50 92 161 5.0E-24 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS01005 6bce7814a5e6ab4370eb9e566cb35619 167 SUPERFAMILY SSF82708 112 157 2.67E-6 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS01005 6bce7814a5e6ab4370eb9e566cb35619 167 SMART SM00393 81 160 1.9E-13 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS01005 6bce7814a5e6ab4370eb9e566cb35619 167 Gene3D G3DSA:3.30.300.120 7 84 2.0E-15 T 06-07-2017 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Gene3D G3DSA:3.30.565.10 470 644 1.5E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Gene3D G3DSA:3.30.450.40 220 409 2.3E-30 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Gene3D G3DSA:1.10.287.130 410 469 1.0E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Pfam PF01590 GAF domain 246 394 2.8E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 582 6.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 596 6.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 621 6.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 641 6.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SUPERFAMILY SSF55874 473 646 1.83E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Pfam PF17150 C-terminal domain of two-partite extracellular sensor domain 139 218 2.0E-29 T 06-07-2017 IPR033415 C-terminal domain of two-partite extracellular sensor domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SUPERFAMILY SSF55781 227 402 3.49E-30 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SUPERFAMILY SSF47384 403 484 1.35E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SMART SM00388 416 483 3.2E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Pfam PF10069 Sensory domain in DIguanylate Cyclases and Two-component system 6 124 5.6E-38 T 06-07-2017 IPR019278 DICT domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SMART SM00065 245 404 1.2E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 532 641 3.0E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 SMART SM00387 530 644 1.6E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16485 187e9426daf52a9eb3ed67117a648a13 662 Pfam PF00512 His Kinase A (phospho-acceptor) domain 417 483 1.4E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 Pfam PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus 504 639 1.3E-23 T 06-07-2017 IPR002128 NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 276 298 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 515 536 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 434 456 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 92 112 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 377 399 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 66 90 1.9E-41 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 Pfam PF00361 Proton-conducting membrane transporter 141 442 6.8E-90 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 118 138 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 258 284 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 90 115 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 236 257 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 435 454 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 165 186 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 326 338 2.1E-76 T 06-07-2017 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 8 686 2.2E-192 T 06-07-2017 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00880 d27e101de3d68c0ecca312ec3ff2ef1f 690 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 73 129 2.4E-21 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Gene3D G3DSA:3.40.228.10 194 395 7.1E-50 T 06-07-2017 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Gene3D G3DSA:3.40.50.740 396 617 1.4E-43 T 06-07-2017 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Gene3D G3DSA:3.40.50.740 122 193 1.4E-43 T 06-07-2017 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Pfam PF00384 Molybdopterin oxidoreductase 122 491 2.0E-30 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 SUPERFAMILY SSF50692 652 757 1.04E-14 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 PIRSF PIRSF000144 14 758 9.5E-148 T 06-07-2017 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Pfam PF01568 Molydopterin dinucleotide binding domain 653 752 9.4E-18 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 26 755 6.7E-241 T 06-07-2017 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 Gene3D G3DSA:2.40.40.20 618 751 2.7E-10 T 06-07-2017 APT55_RS03140 969b23ed1e5e389bec057cb7445b0635 758 SUPERFAMILY SSF53706 46 629 2.36E-112 T 06-07-2017 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 SUPERFAMILY SSF52425 3 181 2.49E-42 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Gene3D G3DSA:1.10.579.10 275 454 9.6E-41 T 06-07-2017 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Gene3D G3DSA:1.25.40.80 187 267 6.6E-18 T 06-07-2017 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Gene3D G3DSA:1.25.40.80 138 149 6.6E-18 T 06-07-2017 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Pfam PF00875 DNA photolyase 4 124 2.4E-32 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Pfam PF03441 FAD binding domain of DNA photolyase 261 452 4.1E-45 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 SUPERFAMILY SSF48173 188 452 1.96E-63 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS07715 f0857399da80a86dec0536efc4b63d8b 550 Gene3D G3DSA:3.40.50.620 2 129 5.4E-39 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 3 158 34.972 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 06-07-2017 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4 157 2.2E-66 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 Pfam PF02542 YgbB family 4 156 1.0E-64 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 Gene3D G3DSA:3.30.1330.50 1 158 1.8E-68 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS16480 9c30ecc58cc7ed982d381d785611872f 159 SUPERFAMILY SSF69765 1 158 5.76E-64 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT55_RS18325 93c16f54f849f8874ae364f5d04e5720 178 Gene3D G3DSA:3.40.50.300 11 176 1.1E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18325 93c16f54f849f8874ae364f5d04e5720 178 PIRSF PIRSF015617 3 178 9.5E-52 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS18325 93c16f54f849f8874ae364f5d04e5720 178 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 22 176 7.1E-30 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS18325 93c16f54f849f8874ae364f5d04e5720 178 SUPERFAMILY SSF52540 20 174 1.06E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 Gene3D G3DSA:2.170.130.10 49 202 3.4E-31 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 Pfam PF07715 TonB-dependent Receptor Plug Domain 89 192 1.7E-15 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 Gene3D G3DSA:2.40.170.20 206 734 1.1E-144 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 Pfam PF00593 TonB dependent receptor 497 730 2.2E-32 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 90 734 2.5E-107 T 06-07-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 APT55_RS25100 25c3cfb287d11f1c662c579623adb3ff 734 SUPERFAMILY SSF56935 49 734 5.27E-124 T 06-07-2017 APT55_RS13490 32b15cf45616134e5496fddf146c6da7 139 Gene3D G3DSA:1.10.260.40 13 68 1.8E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13490 32b15cf45616134e5496fddf146c6da7 139 SUPERFAMILY SSF47413 14 70 2.06E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13490 32b15cf45616134e5496fddf146c6da7 139 Pfam PF01381 Helix-turn-helix 21 73 3.7E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS13490 32b15cf45616134e5496fddf146c6da7 139 SMART SM00530 18 73 3.9E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS25710 666b2148957d14c95df1b314698d1330 75 SUPERFAMILY SSF54862 4 68 6.38E-15 T 06-07-2017 APT55_RS25710 666b2148957d14c95df1b314698d1330 75 PRINTS PR00354 7Fe ferredoxin signature 18 28 5.0E-6 T 06-07-2017 IPR000813 7Fe ferredoxin GO:0009055 APT55_RS25710 666b2148957d14c95df1b314698d1330 75 PRINTS PR00354 7Fe ferredoxin signature 41 58 5.0E-6 T 06-07-2017 IPR000813 7Fe ferredoxin GO:0009055 APT55_RS25710 666b2148957d14c95df1b314698d1330 75 Gene3D G3DSA:3.30.70.20 5 66 2.3E-13 T 06-07-2017 APT55_RS25710 666b2148957d14c95df1b314698d1330 75 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 46 57 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS25710 666b2148957d14c95df1b314698d1330 75 Pfam PF12838 4Fe-4S dicluster domain 10 58 5.8E-8 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 06-07-2017 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 SUPERFAMILY SSF46906 67 139 5.76E-27 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 Gene3D G3DSA:3.30.1550.10 2 71 1.3E-38 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 SMART SM00649 9 140 1.2E-85 T 06-07-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 2.1E-29 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.648 T 06-07-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 2.4E-63 T 06-07-2017 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 5.9E-24 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 Gene3D G3DSA:1.10.10.250 72 139 4.8E-31 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 SUPERFAMILY SSF54747 3 72 4.45E-30 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal APT55_RS17495 765fbd11878e3c711e9e2fa91a52ca8d 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 4.0E-16 T 06-07-2017 APT55_RS01790 a8c30e7c87cdb4004fb8e162811ad0f0 212 SUPERFAMILY SSF82057 2 68 2.75E-18 T 06-07-2017 APT55_RS01790 a8c30e7c87cdb4004fb8e162811ad0f0 212 Gene3D G3DSA:3.90.1720.10 87 208 5.8E-35 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain APT55_RS01790 a8c30e7c87cdb4004fb8e162811ad0f0 212 Pfam PF00877 NlpC/P60 family 96 177 3.8E-25 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain APT55_RS01790 a8c30e7c87cdb4004fb8e162811ad0f0 212 Gene3D G3DSA:2.30.30.40 2 68 5.2E-23 T 06-07-2017 APT55_RS01790 a8c30e7c87cdb4004fb8e162811ad0f0 212 SUPERFAMILY SSF54001 88 208 8.83E-34 T 06-07-2017 APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 TIGRFAM TIGR01929 menB: naphthoate synthase 11 273 1.4E-135 T 06-07-2017 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 Gene3D G3DSA:3.90.226.10 6 213 6.2E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 SUPERFAMILY SSF52096 5 274 2.08E-78 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 Gene3D G3DSA:1.10.12.10 215 265 5.7E-30 T 06-07-2017 IPR014748 Crontonase, C-terminal APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 271 1.1E-76 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 115 135 - T 06-07-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 APT55_RS27230 07abef4efc82b0fc2a843e480a0360f1 277 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 5 276 56.045 T 06-07-2017 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Pfam PF03412 Peptidase C39 family 322 434 2.8E-7 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Gene3D G3DSA:2.60.120.10 12 138 4.8E-23 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SMART SM00382 805 991 1.1E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SUPERFAMILY SSF52540 769 1013 3.41E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SUPERFAMILY SSF51206 14 135 8.25E-26 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Pfam PF00027 Cyclic nucleotide-binding domain 173 255 2.1E-15 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Pfam PF00027 Cyclic nucleotide-binding domain 42 127 2.8E-14 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SUPERFAMILY SSF51206 147 264 4.06E-20 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Gene3D G3DSA:3.40.50.300 779 1009 2.4E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Gene3D G3DSA:2.60.120.10 144 275 7.1E-20 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Gene3D G3DSA:3.90.70.10 322 433 1.4E-10 T 06-07-2017 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Pfam PF00005 ABC transporter 798 945 8.2E-39 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SUPERFAMILY SSF90123 454 764 1.31E-51 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 ProSitePatterns PS00211 ABC transporters family signature. 917 931 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Gene3D G3DSA:1.20.1560.10 454 762 1.3E-56 T 06-07-2017 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 Pfam PF00664 ABC transporter transmembrane region 468 735 3.4E-26 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SMART SM00100 22 140 4.2E-16 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS31850 458782549ab08c3fcf2a31dc1b8e75c3 1015 SMART SM00100 153 268 1.0E-12 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS06770 3379e0397a276bc7ee25eb2fbc557f00 39 Hamap MF_01317 Photosystem II reaction center protein L [psbL]. 1 39 15.62 T 06-07-2017 IPR003372 Photosystem II PsbL GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS06770 3379e0397a276bc7ee25eb2fbc557f00 39 SUPERFAMILY SSF161017 5 39 6.54E-17 T 06-07-2017 APT55_RS06770 3379e0397a276bc7ee25eb2fbc557f00 39 Pfam PF02419 PsbL protein 5 39 3.9E-25 T 06-07-2017 IPR003372 Photosystem II PsbL GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS12745 73188083e01b3646271f3ffeb45202e7 397 Pfam PF00534 Glycosyl transferases group 1 206 350 1.5E-27 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12745 73188083e01b3646271f3ffeb45202e7 397 SUPERFAMILY SSF53756 10 373 1.97E-53 T 06-07-2017 APT55_RS12745 73188083e01b3646271f3ffeb45202e7 397 Gene3D G3DSA:3.40.50.2000 174 352 2.0E-27 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 528 921 5.8E-142 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:3.40.50.980 651 807 2.8E-39 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF13193 AMP-binding enzyme C-terminal domain 905 977 2.6E-13 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:1.10.1200.10 1009 1073 2.9E-25 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SMART SM00823 Phosphopantetheine attachment site 1005 1073 2.6E-4 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF47336 1000 1105 8.9E-20 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF52777 232 472 1.33E-68 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF00668 Condensation domain 1091 1392 2.2E-78 T 06-07-2017 IPR001242 Condensation domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF00668 Condensation domain 43 343 1.0E-85 T 06-07-2017 IPR001242 Condensation domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:2.30.38.10 808 887 1.2E-28 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 1598 1875 9.1E-45 T 06-07-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF56801 467 1013 8.9E-163 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF13745 HxxPF-repeated domain 1414 1505 4.2E-28 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF13745 HxxPF-repeated domain 365 455 8.2E-35 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF00550 Phosphopantetheine attachment site 1008 1066 4.7E-14 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Pfam PF00501 AMP-binding enzyme 507 897 9.5E-105 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF52777 1095 1272 7.11E-56 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:3.30.300.30 892 1008 1.2E-41 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF51197 1565 1877 5.04E-89 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF52777 47 224 2.89E-52 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:3.40.50.980 503 650 4.7E-54 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 SUPERFAMILY SSF52777 1280 1527 3.34E-63 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:3.60.130.10 1592 1726 2.3E-62 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 Gene3D G3DSA:3.60.130.10 1758 1879 2.3E-62 T 06-07-2017 APT55_RS30710 fcbafa1997cdd41479aa8eb2c5aaa345 1897 ProSitePatterns PS00455 Putative AMP-binding domain signature. 645 656 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 Pfam PF04055 Radical SAM superfamily 12 172 1.5E-11 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 SMART SM00729 8 220 6.1E-5 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 Gene3D G3DSA:3.20.20.70 4 273 8.7E-41 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 TIGRFAM TIGR03550 F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 5 304 2.8E-81 T 06-07-2017 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 SUPERFAMILY SSF102114 9 284 7.06E-36 T 06-07-2017 APT55_RS16690 2e83efb97c2c313c73711b5ab25056b0 323 Hamap MF_01611 FO synthase subunit 1 [cofG]. 4 306 46.189 T 06-07-2017 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 SUPERFAMILY SSF50494 61 282 3.38E-66 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 SMART SM00228 305 374 1.4E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 SUPERFAMILY SSF50156 255 388 2.63E-24 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 Pfam PF13365 Trypsin-like peptidase domain 112 249 3.1E-37 T 06-07-2017 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 Gene3D G3DSA:2.30.42.10 287 388 2.0E-27 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 332 344 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 182 206 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 242 259 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 PRINTS PR00834 HtrA/DegQ protease family signature 220 237 1.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 Pfam PF13180 PDZ domain 285 381 7.8E-16 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 Gene3D G3DSA:2.40.10.10 174 286 9.4E-46 T 06-07-2017 APT55_RS03145 50039eb2feae950026a0efd40d89207b 392 Gene3D G3DSA:2.40.10.10 63 173 1.9E-38 T 06-07-2017 APT55_RS31490 909ca086160101045783de3a56c78b9e 246 Gene3D G3DSA:3.40.50.300 30 217 3.8E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31490 909ca086160101045783de3a56c78b9e 246 PIRSF PIRSF003073 1 236 6.0E-75 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS31490 909ca086160101045783de3a56c78b9e 246 SUPERFAMILY SSF52540 78 209 1.67E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31490 909ca086160101045783de3a56c78b9e 246 SMART SM00382 82 214 6.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS31490 909ca086160101045783de3a56c78b9e 246 Pfam PF01695 IstB-like ATP binding protein 38 213 1.7E-57 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS28675 909ca086160101045783de3a56c78b9e 246 Gene3D G3DSA:3.40.50.300 30 217 3.8E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28675 909ca086160101045783de3a56c78b9e 246 PIRSF PIRSF003073 1 236 6.0E-75 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS28675 909ca086160101045783de3a56c78b9e 246 SUPERFAMILY SSF52540 78 209 1.67E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28675 909ca086160101045783de3a56c78b9e 246 SMART SM00382 82 214 6.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS28675 909ca086160101045783de3a56c78b9e 246 Pfam PF01695 IstB-like ATP binding protein 38 213 1.7E-57 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS31290 909ca086160101045783de3a56c78b9e 246 Gene3D G3DSA:3.40.50.300 30 217 3.8E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31290 909ca086160101045783de3a56c78b9e 246 PIRSF PIRSF003073 1 236 6.0E-75 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS31290 909ca086160101045783de3a56c78b9e 246 SUPERFAMILY SSF52540 78 209 1.67E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31290 909ca086160101045783de3a56c78b9e 246 SMART SM00382 82 214 6.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS31290 909ca086160101045783de3a56c78b9e 246 Pfam PF01695 IstB-like ATP binding protein 38 213 1.7E-57 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 PRINTS PR00625 DnaJ domain signature 42 62 5.7E-12 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 PRINTS PR00625 DnaJ domain signature 7 25 5.7E-12 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 PRINTS PR00625 DnaJ domain signature 25 40 5.7E-12 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 SUPERFAMILY SSF46565 2 58 3.66E-18 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 Pfam PF07719 Tetratricopeptide repeat 144 177 3.4E-6 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 SUPERFAMILY SSF48452 113 186 2.04E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 Pfam PF13432 Tetratricopeptide repeat 107 142 9.6E-4 T 06-07-2017 APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 Gene3D G3DSA:1.25.40.10 95 189 1.8E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 Gene3D G3DSA:1.10.287.110 4 57 5.4E-18 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 Pfam PF00226 DnaJ domain 5 57 1.3E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS08785 d7a039a8d87fc46e8676f82becddc502 199 SMART SM00271 4 62 7.9E-18 T 06-07-2017 IPR001623 DnaJ domain APT55_RS24295 2830f6acf5579eb37c91913496b1c192 200 Pfam PF00694 Aconitase C-terminal domain 56 113 3.6E-16 T 06-07-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS24295 2830f6acf5579eb37c91913496b1c192 200 Gene3D G3DSA:3.20.19.10 13 188 9.7E-31 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS24295 2830f6acf5579eb37c91913496b1c192 200 SUPERFAMILY SSF52016 7 178 3.14E-43 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 Pfam PF13633 Prokaryotic N-terminal methylation site 20 45 1.9E-9 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 21 42 1.0E-8 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 20 40 - T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 Gene3D G3DSA:3.30.700.10 22 112 2.5E-12 T 06-07-2017 APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 Pfam PF16734 Type IV pilin-like G and H, putative 54 162 7.7E-27 T 06-07-2017 IPR031975 Type IV pilin-like putative secretion pathway protein G/H APT55_RS06575 f3d67ccac860f49c63fde52ef7c41dc3 171 SUPERFAMILY SSF54523 22 117 1.96E-18 T 06-07-2017 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 PRINTS PR00075 Fatty acid desaturase family 1 signature 63 83 8.5E-25 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 PRINTS PR00075 Fatty acid desaturase family 1 signature 232 246 8.5E-25 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 PRINTS PR00075 Fatty acid desaturase family 1 signature 101 130 8.5E-25 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 PRINTS PR00075 Fatty acid desaturase family 1 signature 18 38 8.5E-25 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 PRINTS PR00075 Fatty acid desaturase family 1 signature 189 210 8.5E-25 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS22440 c782e33fe14ea3c88929ca295d0bcb17 279 Pfam PF00487 Fatty acid desaturase 43 265 1.3E-20 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS10150 8fe35b81b7b3d73d9daa5507a3d20405 530 Pfam PF01926 50S ribosome-binding GTPase 129 243 2.4E-15 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10150 8fe35b81b7b3d73d9daa5507a3d20405 530 SUPERFAMILY SSF52540 118 268 4.12E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10150 8fe35b81b7b3d73d9daa5507a3d20405 530 Gene3D G3DSA:3.40.50.300 121 324 2.9E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10150 8fe35b81b7b3d73d9daa5507a3d20405 530 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 127 260 3.2E-12 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS10150 8fe35b81b7b3d73d9daa5507a3d20405 530 Pfam PF05128 Domain of unknown function (DUF697) 321 479 1.0E-55 T 06-07-2017 IPR021147 Protein of unknown function DUF697 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 Gene3D G3DSA:3.40.50.720 10 195 8.5E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 Gene3D G3DSA:3.30.360.10 196 497 3.2E-122 T 06-07-2017 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 10 498 1.4E-194 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 196 4.9E-58 T 06-07-2017 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 SUPERFAMILY SSF55347 186 497 3.6E-115 T 06-07-2017 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 186 192 - T 06-07-2017 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 337 363 6.2E-49 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 152 165 6.2E-49 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 246 262 6.2E-49 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 176 204 6.2E-49 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 228 245 6.2E-49 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 198 496 2.2E-119 T 06-07-2017 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 PIRSF PIRSF000110 1 500 2.9E-178 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 SUPERFAMILY SSF51735 6 199 1.0E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28215 cd89ce42fffa9f9411e4f632646a1362 501 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 10 498 81.479 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 Pfam PF01467 Cytidylyltransferase-like 4 132 8.8E-19 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 SUPERFAMILY SSF52374 2 155 1.96E-43 T 06-07-2017 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 48 72 2.2E-52 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 84 100 2.2E-52 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 1 19 2.2E-52 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 19 40 2.2E-52 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 111 133 2.2E-52 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 Gene3D G3DSA:3.40.50.620 2 154 2.6E-53 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 1 157 34.344 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 2 152 1.3E-59 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 APT55_RS02510 8b2acb2e56e77272be6bc89f0846ab75 183 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 62 2.4E-18 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 SMART SM00388 218 285 3.9E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 Gene3D G3DSA:3.30.565.10 272 442 3.8E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 441 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 SMART SM00387 332 443 8.9E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 SUPERFAMILY SSF47384 210 283 2.35E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 442 4.5E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 Gene3D G3DSA:1.10.287.130 215 271 3.7E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 283 5.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23435 704fc08da9b8f42b72ad39f2387fa691 443 SUPERFAMILY SSF55874 274 442 9.56E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16025 32ef17fdc5f69850a825d8695de25fb5 150 SUPERFAMILY SSF143422 9 126 2.09E-27 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS16025 32ef17fdc5f69850a825d8695de25fb5 150 Gene3D G3DSA:3.30.70.1290 9 129 1.2E-23 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS16025 32ef17fdc5f69850a825d8695de25fb5 150 SMART SM01321 10 125 5.2E-19 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS16025 32ef17fdc5f69850a825d8695de25fb5 150 Pfam PF01797 Transposase IS200 like 11 125 6.9E-25 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 SUPERFAMILY SSF51905 149 323 4.37E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 4.3E-11 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 4.3E-11 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.3E-11 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 311 4.4E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 SUPERFAMILY SSF51905 5 194 7.28E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 Gene3D G3DSA:3.50.50.60 112 315 2.5E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 Gene3D G3DSA:3.50.50.60 6 111 1.5E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 284 291 1.2E-8 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 1.2E-8 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.2E-8 T 06-07-2017 APT55_RS07865 8742c10f1b252231eb7d1b7d9fde0e14 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 243 257 1.2E-8 T 06-07-2017 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF52440 1 112 1.58E-46 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:3.30.1490.20 129 201 4.6E-22 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF02626 Allophanate hydrolase subunit 2 472 744 1.1E-87 T 06-07-2017 IPR003778 Carboxyltransferase domain, subdomain A and B APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SMART SM00796 795 1028 2.7E-104 T 06-07-2017 IPR003833 Carboxyltransferase domain, subdomain C and D APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1195 0.0 T 06-07-2017 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF02682 Allophanate hydrolase subunit 1 796 1015 6.0E-45 T 06-07-2017 IPR003833 Carboxyltransferase domain, subdomain C and D APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 3.7E-36 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF51246 331 442 8.89E-36 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF50891 912 1044 5.69E-26 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:3.30.1360.40 795 877 4.8E-25 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.9E-43 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 319 4.3E-66 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:3.40.50.20 1 128 7.6E-47 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF51230 1122 1195 1.24E-18 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 449 767 3.6E-92 T 06-07-2017 IPR003778 Carboxyltransferase domain, subdomain A and B APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF160467 796 888 2.75E-18 T 06-07-2017 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:2.40.50.100 1124 1195 1.1E-21 T 06-07-2017 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Pfam PF00364 Biotin-requiring enzyme 1136 1195 3.2E-14 T 06-07-2017 IPR000089 Biotin/lipoyl attachment APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:3.30.470.20 203 441 1.3E-90 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:2.40.100.10 625 755 5.2E-34 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 Gene3D G3DSA:2.40.100.10 912 1051 1.2E-44 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF56059 83 350 5.48E-64 T 06-07-2017 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SMART SM00878 336 440 1.6E-51 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SUPERFAMILY SSF50891 625 751 3.15E-33 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS08080 bdb7ff1591ff13843120a70901914b96 1198 SMART SM00797 471 761 3.1E-169 T 06-07-2017 IPR003778 Carboxyltransferase domain, subdomain A and B APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Gene3D G3DSA:2.30.38.10 781 858 1.4E-30 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 SUPERFAMILY SSF56801 429 992 2.49E-167 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Gene3D G3DSA:3.30.300.30 863 982 4.0E-49 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 490 892 1.6E-142 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Gene3D G3DSA:1.10.1200.10 983 1048 1.4E-31 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 SUPERFAMILY SSF52777 18 194 2.22E-36 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 SUPERFAMILY SSF52777 201 457 2.22E-32 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 ProSitePatterns PS00455 Putative AMP-binding domain signature. 611 622 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 SMART SM00823 Phosphopantetheine attachment site 979 1048 2.4E-8 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Gene3D G3DSA:3.40.50.980 618 780 4.2E-33 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Pfam PF00550 Phosphopantetheine attachment site 981 1044 4.0E-17 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Pfam PF00668 Condensation domain 16 309 5.3E-52 T 06-07-2017 IPR001242 Condensation domain APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 SUPERFAMILY SSF47336 971 1045 1.11E-23 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1003 1018 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Gene3D G3DSA:3.40.50.980 462 617 7.5E-61 T 06-07-2017 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Pfam PF00501 AMP-binding enzyme 469 868 7.6E-100 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30715 214fe0bf9581d0d3c77fdf44403a0565 1089 Pfam PF13193 AMP-binding enzyme C-terminal domain 876 951 9.8E-15 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 SUPERFAMILY SSF55326 2 164 4.64E-50 T 06-07-2017 APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 Pfam PF02769 AIR synthase related protein, C-terminal domain 170 335 7.8E-33 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 Gene3D G3DSA:3.30.1330.10 16 164 3.5E-60 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 1 331 2.3E-137 T 06-07-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 Pfam PF00586 AIR synthase related protein, N-terminal domain 58 158 5.8E-16 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 1 340 46.574 T 06-07-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 Gene3D G3DSA:3.90.650.10 165 336 2.1E-62 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS24110 52484d0057f66600dfa60c0b32685d1d 342 SUPERFAMILY SSF56042 165 336 7.78E-57 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 Pfam PF13533 Biotin-lipoyl like 86 128 6.9E-12 T 06-07-2017 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 Gene3D G3DSA:2.40.50.100 86 117 4.3E-16 T 06-07-2017 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 Gene3D G3DSA:2.40.50.100 352 387 4.3E-16 T 06-07-2017 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 95 115 3.7E-18 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 468 483 3.7E-18 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 53 76 3.7E-18 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 423 446 3.7E-18 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 SUPERFAMILY SSF111369 85 129 2.09E-7 T 06-07-2017 APT55_RS29950 d3d127d8a402801e7ac4d663f68b1e29 504 Pfam PF13437 HlyD family secretion protein 355 471 1.3E-19 T 06-07-2017 APT55_RS20130 7b34432e8798c7909d46d2ec9fd773e8 111 Pfam PF08869 XisI protein 1 110 8.1E-46 T 06-07-2017 IPR014968 XisI protein APT55_RS20130 7b34432e8798c7909d46d2ec9fd773e8 111 SUPERFAMILY SSF143847 1 111 2.22E-45 T 06-07-2017 IPR014968 XisI protein APT55_RS20130 7b34432e8798c7909d46d2ec9fd773e8 111 Gene3D G3DSA:3.30.310.110 1 111 3.4E-46 T 06-07-2017 IPR014968 XisI protein APT55_RS11715 b8c23802b4b1668260fa5d6e50d71b5a 69 Gene3D G3DSA:2.40.50.100 1 69 1.2E-24 T 06-07-2017 APT55_RS11715 b8c23802b4b1668260fa5d6e50d71b5a 69 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 67 3.8E-20 T 06-07-2017 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 APT55_RS11715 b8c23802b4b1668260fa5d6e50d71b5a 69 SUPERFAMILY SSF50331 1 69 1.4E-19 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS11715 b8c23802b4b1668260fa5d6e50d71b5a 69 Pfam PF03459 TOBE domain 4 66 2.2E-16 T 06-07-2017 IPR005116 Transport-associated OB, type 1 APT55_RS25995 3479f125c00d7f9afcf8484183025820 607 Gene3D G3DSA:2.40.160.50 228 604 9.0E-66 T 06-07-2017 APT55_RS25995 3479f125c00d7f9afcf8484183025820 607 Gene3D G3DSA:3.10.20.310 112 191 2.7E-22 T 06-07-2017 APT55_RS25995 3479f125c00d7f9afcf8484183025820 607 Pfam PF08479 POTRA domain, ShlB-type 116 191 8.4E-22 T 06-07-2017 IPR013686 Polypeptide-transport-associated, ShlB-type APT55_RS25995 3479f125c00d7f9afcf8484183025820 607 Pfam PF01103 Surface antigen 450 602 2.5E-12 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 APT55_RS24405 d20bbb7f8ced39f3f48e7bb653e9c44f 254 Gene3D G3DSA:3.40.50.150 43 228 3.6E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24405 d20bbb7f8ced39f3f48e7bb653e9c44f 254 Pfam PF05050 Methyltransferase FkbM domain 51 227 4.2E-17 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS24405 d20bbb7f8ced39f3f48e7bb653e9c44f 254 SUPERFAMILY SSF53335 23 228 2.33E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24405 d20bbb7f8ced39f3f48e7bb653e9c44f 254 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 49 203 1.8E-13 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS21310 094b22d58f800f9dd5880caab5a7c30e 319 Pfam PF02445 Quinolinate synthetase A protein 19 316 4.0E-119 T 06-07-2017 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT55_RS21310 094b22d58f800f9dd5880caab5a7c30e 319 Gene3D G3DSA:1.10.10.10 12 53 6.2E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS21310 094b22d58f800f9dd5880caab5a7c30e 319 SUPERFAMILY SSF142754 15 317 4.97E-119 T 06-07-2017 APT55_RS21310 094b22d58f800f9dd5880caab5a7c30e 319 Hamap MF_00568 Quinolinate synthase A [nadA]. 14 317 45.825 T 06-07-2017 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT55_RS21310 094b22d58f800f9dd5880caab5a7c30e 319 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 13 318 6.3E-125 T 06-07-2017 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT55_RS27960 7653a5914d0e55b9022ad25b98f5ef65 308 SUPERFAMILY SSF53448 8 159 5.84E-24 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27960 7653a5914d0e55b9022ad25b98f5ef65 308 Gene3D G3DSA:3.90.550.10 9 167 3.0E-12 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27960 7653a5914d0e55b9022ad25b98f5ef65 308 Pfam PF00535 Glycosyl transferase family 2 10 141 6.8E-16 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS11225 d76056699ad09226ab261774427bb946 337 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 38 288 2.4E-79 T 06-07-2017 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 APT55_RS11225 d76056699ad09226ab261774427bb946 337 SUPERFAMILY SSF143597 69 273 3.4E-54 T 06-07-2017 APT55_RS11225 d76056699ad09226ab261774427bb946 337 Gene3D G3DSA:3.40.1700.10 143 273 5.5E-45 T 06-07-2017 APT55_RS11225 d76056699ad09226ab261774427bb946 337 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 149 268 2.3E-39 T 06-07-2017 IPR003390 DNA integrity scanning protein, DisA, N-terminal APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 Pfam PF00459 Inositol monophosphatase family 22 243 4.3E-39 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 2.6E-9 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 2.6E-9 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 2.6E-9 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 Gene3D G3DSA:3.40.190.80 155 277 3.1E-18 T 06-07-2017 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 Gene3D G3DSA:3.30.540.10 9 143 1.4E-33 T 06-07-2017 APT55_RS26665 5164d8ffd039e8a318088339ccda9fb9 283 SUPERFAMILY SSF56655 9 277 1.05E-57 T 06-07-2017 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 SUPERFAMILY SSF51395 463 1218 3.75E-273 T 06-07-2017 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Gene3D G3DSA:3.20.20.70 455 798 9.9E-110 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 SUPERFAMILY SSF69336 1231 1496 3.01E-100 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Gene3D G3DSA:3.20.20.70 830 1216 4.0E-184 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Gene3D G3DSA:2.160.20.60 1242 1508 2.1E-110 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Pfam PF01645 Conserved region in glutamate synthase 814 1182 1.9E-158 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Gene3D G3DSA:3.60.20.10 22 453 1.3E-193 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Pfam PF00310 Glutamine amidotransferases class-II 22 442 9.7E-199 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 SUPERFAMILY SSF56235 22 445 1.47E-161 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Pfam PF01493 GXGXG motif 1263 1448 2.3E-85 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS18565 af0c77459c0a3f5c0889141fcccdbecb 1528 Pfam PF04898 Glutamate synthase central domain 469 752 7.9E-120 T 06-07-2017 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 Gene3D G3DSA:3.20.20.450 307 558 1.6E-103 T 06-07-2017 IPR001633 EAL domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 Pfam PF00990 Diguanylate cyclase, GGDEF domain 136 289 5.1E-25 T 06-07-2017 IPR000160 GGDEF domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 Gene3D G3DSA:3.30.70.270 136 301 9.5E-31 T 06-07-2017 APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 SUPERFAMILY SSF55073 140 296 3.14E-29 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 134 292 5.6E-17 T 06-07-2017 IPR000160 GGDEF domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 SMART SM00052 304 550 2.2E-125 T 06-07-2017 IPR001633 EAL domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 SMART SM00267 124 294 8.6E-30 T 06-07-2017 IPR000160 GGDEF domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 Pfam PF00563 EAL domain 310 545 2.0E-77 T 06-07-2017 IPR001633 EAL domain APT55_RS15820 a1575d7c78302acefbec2fcdbf8516e1 565 SUPERFAMILY SSF141868 309 557 1.96E-93 T 06-07-2017 IPR001633 EAL domain APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 6 110 1.4E-24 T 06-07-2017 IPR026992 Non-haem dioxygenase N-terminal domain APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 PRINTS PR00682 Isopenicillin N synthase signature 29 46 1.6E-5 T 06-07-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 PRINTS PR00682 Isopenicillin N synthase signature 291 306 1.6E-5 T 06-07-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 PRINTS PR00682 Isopenicillin N synthase signature 224 250 1.6E-5 T 06-07-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 SUPERFAMILY SSF51197 4 303 1.17E-77 T 06-07-2017 APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 163 265 5.1E-18 T 06-07-2017 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 APT55_RS20825 c2b60b8f74479321bbf607bbac481e0a 306 Gene3D G3DSA:2.60.120.330 2 302 5.0E-82 T 06-07-2017 IPR027443 Isopenicillin N synthase-like APT55_RS06695 0cb83e665b68d4f9e532819b1f3284fa 386 SUPERFAMILY SSF56726 195 342 1.7E-21 T 06-07-2017 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 Reactome: R-HSA-912446 APT55_RS06695 0cb83e665b68d4f9e532819b1f3284fa 386 Gene3D G3DSA:3.40.1360.10 193 284 2.1E-11 T 06-07-2017 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SUPERFAMILY SSF55781 140 303 1.0E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SMART SM00448 6 118 6.2E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Pfam PF01590 GAF domain 159 277 1.5E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Gene3D G3DSA:3.30.450.40 234 285 1.7E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Gene3D G3DSA:3.30.450.40 133 187 2.2E-5 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SUPERFAMILY SSF81606 325 484 8.89E-8 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 341 545 7.7E-39 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SUPERFAMILY SSF52172 4 151 2.99E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SMART SM00065 157 287 2.7E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 SMART SM00331 315 545 1.0E-28 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Gene3D G3DSA:3.40.50.2300 6 132 1.6E-28 T 06-07-2017 APT55_RS20625 a643691409a3c04663a85bf3c1927234 546 Pfam PF00072 Response regulator receiver domain 9 117 7.0E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00625 744a2a6496108bb9a289f1f95c26a43b 285 Gene3D G3DSA:2.40.10.10 133 209 2.5E-5 T 06-07-2017 APT55_RS00625 744a2a6496108bb9a289f1f95c26a43b 285 SUPERFAMILY SSF50494 15 57 7.84E-12 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS00625 744a2a6496108bb9a289f1f95c26a43b 285 SUPERFAMILY SSF50494 86 206 7.84E-12 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS00625 744a2a6496108bb9a289f1f95c26a43b 285 Pfam PF13365 Trypsin-like peptidase domain 29 212 1.5E-8 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 34 89 7.9E-23 T 06-07-2017 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Gene3D G3DSA:3.40.50.980 88 272 1.3E-43 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Pfam PF13193 AMP-binding enzyme C-terminal domain 542 620 2.4E-28 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 SUPERFAMILY SSF56801 23 651 3.66E-181 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Gene3D G3DSA:3.30.300.30 529 636 1.5E-27 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Gene3D G3DSA:3.40.50.980 273 431 5.5E-32 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 29 653 0.0 T 06-07-2017 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Gene3D G3DSA:2.30.38.10 446 526 3.6E-9 T 06-07-2017 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 ProSitePatterns PS00455 Putative AMP-binding domain signature. 267 278 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Pfam PF00501 AMP-binding enzyme 98 533 4.5E-96 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS02240 5d8aa2b909436f637f957c46e33db179 655 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 11 655 53.302 T 06-07-2017 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 SUPERFAMILY SSF56601 264 634 5.23E-102 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 SUPERFAMILY SSF56601 214 236 5.23E-102 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 Pfam PF00912 Transglycosylase 66 232 3.3E-54 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 668 746 1.0E-10 T 06-07-2017 IPR009647 Penicillin-binding, C-terminal APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 SUPERFAMILY SSF53955 45 260 1.97E-62 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 Gene3D G3DSA:3.40.710.10 235 625 6.4E-88 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 48 737 6.8E-177 T 06-07-2017 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 Pfam PF00905 Penicillin binding protein transpeptidase domain 314 550 1.1E-17 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS10585 c2afc54b5c2d800544c2efa945b74f32 767 Gene3D G3DSA:1.10.3810.10 67 234 5.6E-59 T 06-07-2017 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 442 1.1E-152 T 06-07-2017 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 Pfam PF04055 Radical SAM superfamily 150 329 2.3E-28 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 150 170 - T 06-07-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 Pfam PF00919 Uncharacterized protein family UPF0004 6 105 3.0E-31 T 06-07-2017 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 Pfam PF01938 TRAM domain 382 445 2.1E-13 T 06-07-2017 IPR002792 TRAM domain APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 5 446 67.747 T 06-07-2017 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 Gene3D G3DSA:3.80.30.20 146 384 1.8E-76 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 SUPERFAMILY SSF102114 139 375 2.09E-61 T 06-07-2017 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 SMART SM00729 146 371 6.8E-60 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS02455 00cb7bd0f7f272f549f939494348ee7c 450 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 6 443 1.4E-140 T 06-07-2017 APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 Pfam PF01715 IPP transferase 56 292 5.3E-71 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 SUPERFAMILY SSF52540 23 177 1.58E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 23 317 26.277 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 Gene3D G3DSA:3.40.50.300 21 188 7.4E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 Gene3D G3DSA:1.10.287.890 212 290 2.3E-25 T 06-07-2017 APT55_RS17945 bcd687cbbc784bf6e880871c281fba8f 324 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 23 300 1.1E-89 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 Gene3D G3DSA:3.40.605.10 7 261 2.0E-87 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 SUPERFAMILY SSF53720 5 487 4.71E-142 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 7 484 4.0E-170 T 06-07-2017 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 Pfam PF00171 Aldehyde dehydrogenase family 19 480 1.9E-137 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 APT55_RS23660 36453db61c76e2f661c462b68fca9c17 491 Gene3D G3DSA:3.40.309.10 262 452 3.8E-58 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF46894 124 222 2.83E-24 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:3.40.50.2300 498 624 3.3E-33 T 06-07-2017 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:1.10.10.10 125 224 5.9E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:3.40.50.2300 1 119 2.7E-36 T 06-07-2017 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Pfam PF00072 Response regulator receiver domain 3 113 5.1E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Pfam PF00072 Response regulator receiver domain 502 613 1.9E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Pfam PF01627 Hpt domain 261 350 2.8E-13 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF52172 1 118 3.98E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 3.2E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF55073 632 782 4.47E-29 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:1.20.120.160 259 353 8.3E-10 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:3.40.50.2300 379 497 1.7E-11 T 06-07-2017 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Pfam PF00990 Diguanylate cyclase, GGDEF domain 627 781 4.2E-30 T 06-07-2017 IPR000160 GGDEF domain APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF47226 260 354 2.62E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF52172 379 499 7.26E-12 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SMART SM00862 145 221 1.8E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SUPERFAMILY SSF52172 497 626 4.13E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SMART SM00267 610 788 6.2E-24 T 06-07-2017 IPR000160 GGDEF domain APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SMART SM00448 500 613 3.5E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SMART SM00448 1 112 1.6E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 SMART SM00448 377 488 0.065 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 624 782 4.7E-30 T 06-07-2017 IPR000160 GGDEF domain APT55_RS14090 4471300219eef5b059d316bdc09c27c4 788 Gene3D G3DSA:3.30.70.270 629 782 3.5E-33 T 06-07-2017 APT55_RS13965 dd791fe5917fc4c70fc65d958cab19ae 158 ProSitePatterns PS00194 Thioredoxin family active site. 53 71 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 APT55_RS13965 dd791fe5917fc4c70fc65d958cab19ae 158 Gene3D G3DSA:3.40.30.10 47 154 1.9E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS13965 dd791fe5917fc4c70fc65d958cab19ae 158 SUPERFAMILY SSF52833 46 154 6.59E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS13965 dd791fe5917fc4c70fc65d958cab19ae 158 Pfam PF00085 Thioredoxin 48 103 2.6E-10 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 SUPERFAMILY SSF64484 7 617 5.04E-237 T 06-07-2017 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Pfam PF04983 RNA polymerase Rpb1, domain 3 495 615 9.8E-13 T 06-07-2017 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 348 2.2E-78 T 06-07-2017 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Pfam PF00623 RNA polymerase Rpb1, domain 2 350 491 2.6E-36 T 06-07-2017 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Gene3D G3DSA:2.40.40.20 423 495 4.3E-38 T 06-07-2017 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Gene3D G3DSA:2.40.40.20 355 382 4.3E-38 T 06-07-2017 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 TIGRFAM TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit 7 620 0.0 T 06-07-2017 IPR012755 DNA-directed RNA polymerase, subunit gamma GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 4 620 39.024 T 06-07-2017 APT55_RS00180 eb0c6aced45bf1e51fb0b741f4851cda 621 SMART SM00663 241 520 1.4E-185 T 06-07-2017 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 SMART SM01116 74 146 1.4E-49 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 SUPERFAMILY SSF47413 1 68 8.09E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PIRSF PIRSF001263 1 146 8.2E-63 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 Gene3D G3DSA:1.10.260.40 1 79 2.2E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 Gene3D G3DSA:3.30.1160.10 80 146 2.3E-38 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 Pfam PF02560 Cyanate lyase C-terminal domain 78 145 6.6E-37 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 TIGRFAM TIGR00673 cynS: cyanase 3 146 3.6E-66 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PRINTS PR01693 Cyanase signature 100 116 5.0E-38 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PRINTS PR01693 Cyanase signature 82 96 5.0E-38 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PRINTS PR01693 Cyanase signature 34 51 5.0E-38 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PRINTS PR01693 Cyanase signature 14 29 5.0E-38 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 PRINTS PR01693 Cyanase signature 131 141 5.0E-38 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 SUPERFAMILY SSF55234 79 146 7.85E-32 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07810 411ba6afe7e57b4ca35cfbd39f287f20 146 Hamap MF_00535 Cyanate hydratase [cynS]. 1 146 74.599 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 SMART SM00220 47 312 1.7E-32 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 Gene3D G3DSA:3.30.200.20 43 159 1.6E-14 T 06-07-2017 APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 Gene3D G3DSA:1.10.510.10 160 320 6.1E-35 T 06-07-2017 APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 53 78 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 SUPERFAMILY SSF56112 40 331 3.16E-57 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS22600 5b270c129f5079ddf8af110d6d7c4a5d 458 Pfam PF00069 Protein kinase domain 50 308 2.0E-37 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS07990 9da466300c37231bfa9869a28a1d9e40 304 Gene3D G3DSA:2.80.10.50 43 186 5.4E-33 T 06-07-2017 APT55_RS07990 9da466300c37231bfa9869a28a1d9e40 304 SUPERFAMILY SSF110221 45 147 6.02E-15 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS07990 9da466300c37231bfa9869a28a1d9e40 304 SUPERFAMILY SSF110221 129 194 1.83E-21 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS07990 9da466300c37231bfa9869a28a1d9e40 304 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 130 192 9.8E-21 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 SUPERFAMILY SSF109604 343 498 6.28E-18 T 06-07-2017 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 558 2.6E-209 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 710 4.8E-246 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 9.6E-37 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 9.6E-37 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 396 415 9.6E-37 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 319 335 9.6E-37 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 9.6E-37 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS00370 de41af12d59341eba3e032282f8ec553 712 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 709 25.067 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 Gene3D G3DSA:3.40.50.10690 461 693 2.5E-105 T 06-07-2017 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 Pfam PF02274 Amidinotransferase 35 267 3.2E-19 T 06-07-2017 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 Gene3D G3DSA:3.75.10.10 6 268 8.8E-57 T 06-07-2017 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 SUPERFAMILY SSF55909 6 269 1.51E-54 T 06-07-2017 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 Pfam PF04455 LOR/SDH bifunctional enzyme conserved region 286 386 1.6E-33 T 06-07-2017 IPR007545 LOR/SDH bifunctional enzyme, conserved domain APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 TIGRFAM TIGR00300 TIGR00300: TIGR00300 family protein 283 692 2.6E-193 T 06-07-2017 IPR005239 Conserved hypothetical protein CHP00300 APT55_RS08395 f324566512ea18c0af2fec7716d72128 702 Gene3D G3DSA:2.40.420.10 359 443 1.2E-31 T 06-07-2017 APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 SMART SM00382 41 224 2.8E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 SUPERFAMILY SSF52540 17 255 2.03E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 SUPERFAMILY SSF50331 249 365 2.42E-13 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 Gene3D G3DSA:3.40.50.300 17 247 9.2E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 Pfam PF08402 TOBE domain 293 368 3.1E-14 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 47 346 4.4E-115 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 APT55_RS16850 1060efe876a7c776bd637bb542b9db56 371 Pfam PF00005 ABC transporter 33 174 2.1E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS10750 c28d853befc53d4e7ad5ac29917f78d3 90 SUPERFAMILY SSF143011 21 88 4.71E-5 T 06-07-2017 APT55_RS10750 c28d853befc53d4e7ad5ac29917f78d3 90 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 10 88 5.3E-15 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SUPERFAMILY SSF48452 444 603 1.39E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Gene3D G3DSA:3.40.50.300 44 185 3.1E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Pfam PF13424 Tetratricopeptide repeat 608 679 5.0E-17 T 06-07-2017 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Pfam PF13424 Tetratricopeptide repeat 688 760 3.3E-11 T 06-07-2017 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Pfam PF13424 Tetratricopeptide repeat 528 600 3.9E-15 T 06-07-2017 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Pfam PF00931 NB-ARC domain 55 299 4.4E-10 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Gene3D G3DSA:1.25.40.10 585 762 7.1E-45 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 Gene3D G3DSA:1.25.40.10 435 584 5.4E-28 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 448 481 5.6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 488 521 0.04 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 688 721 7.7E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 568 601 5.9E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 728 761 0.035 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 528 561 0.091 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 608 641 0.025 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SMART SM00028 648 681 5.5E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SUPERFAMILY SSF48452 605 763 2.58E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17330 8e72af3dfa529b043f95609baa44ce28 802 SUPERFAMILY SSF52540 63 296 4.47E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26135 dba635be6f0df67da2e303bf4f72eaa8 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 124 17.669 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT55_RS26135 dba635be6f0df67da2e303bf4f72eaa8 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 116 1.4E-21 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT55_RS26135 dba635be6f0df67da2e303bf4f72eaa8 127 TIGRFAM TIGR00494 crcB: protein CrcB 8 123 2.9E-29 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT55_RS06700 8b62742742e66eaf95f0af46d51f9c44 368 Gene3D G3DSA:3.40.1360.10 181 254 1.7E-5 T 06-07-2017 APT55_RS06700 8b62742742e66eaf95f0af46d51f9c44 368 SUPERFAMILY SSF56726 145 331 2.88E-19 T 06-07-2017 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 Reactome: R-HSA-912446 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:3.40.50.2300 1555 1669 1.7E-22 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:3.30.450.40 986 1148 1.4E-15 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:3.30.565.10 1328 1490 5.2E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1369 1491 5.9E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF52172 1678 1807 5.69E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00448 1678 1792 1.1E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00448 1824 1938 2.2E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00448 1556 1666 2.9E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF13185 GAF domain 1008 1147 7.7E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00388 1253 1321 6.6E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF47384 1238 1322 4.12E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF52172 1820 1944 6.97E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF00072 Response regulator receiver domain 1559 1666 4.1E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF00072 Response regulator receiver domain 1681 1789 8.6E-17 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF00072 Response regulator receiver domain 1826 1938 2.3E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:3.40.50.2300 1817 1944 1.1E-41 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1254 1321 7.0E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00387 1368 1493 6.0E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:1.10.287.130 1244 1317 1.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF55874 1310 1491 5.89E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF58104 862 999 3.4E-8 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF58104 586 860 2.09E-19 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF58104 134 399 3.4E-16 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 Gene3D G3DSA:3.40.50.2300 1679 1816 4.3E-23 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00065 1010 1157 0.0016 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 290 342 4.9E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 842 894 8.8E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 658 710 2.7E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 934 986 3.9E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 382 434 4.2E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 198 250 3.0E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 750 802 4.3E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 474 526 4.7E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 101 158 0.003 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SMART SM00304 566 618 5.9E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF52172 1555 1671 8.25E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF55781 973 1147 3.53E-26 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 SUPERFAMILY SSF58104 310 626 2.59E-21 T 06-07-2017 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1477 1490 2.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1418 1432 2.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1436 1446 2.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14400 2b5e7d79ac5576eb521939d8362bfabb 1944 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1453 1471 2.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 Pfam PF13437 HlyD family secretion protein 273 349 3.8E-8 T 06-07-2017 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 SUPERFAMILY SSF111369 70 169 4.05E-7 T 06-07-2017 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 Gene3D G3DSA:2.40.50.100 81 110 4.3E-11 T 06-07-2017 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 Gene3D G3DSA:2.40.50.100 265 301 4.3E-11 T 06-07-2017 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 Pfam PF13533 Biotin-lipoyl like 82 118 1.2E-5 T 06-07-2017 APT55_RS15350 2e3157213b315bde382a54f539692f13 463 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 245 461 3.7E-28 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00387 1116 1234 7.7E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55874 1060 1232 1.07E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00448 1287 1400 1.9E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 867 990 2.1E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 575 698 1.2E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 454 573 3.8E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF01590 GAF domain 723 853 1.9E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55785 438 565 3.66E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF52172 1285 1405 4.98E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.450.40 701 866 3.6E-18 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.40.50.2300 1284 1405 7.3E-34 T 06-07-2017 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.565.10 1072 1234 1.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1176 1186 1.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1193 1211 1.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1172 1.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1218 1231 1.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1006 1067 6.9E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF47384 989 1068 3.92E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00091 321 388 56.0 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00091 579 646 3.3E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00091 451 519 2.0 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00091 871 937 3.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1116 1232 9.3E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.450.20 450 575 6.1E-21 T 06-07-2017 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55785 332 434 6.46E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.450.20 308 449 7.7E-21 T 06-07-2017 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF00072 Response regulator receiver domain 1289 1400 1.6E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55785 564 691 1.48E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00388 1005 1071 6.5E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:1.10.287.130 997 1066 1.1E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55781 703 867 2.84E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SUPERFAMILY SSF55785 859 983 6.28E-28 T 06-07-2017 IPR000014 PAS domain APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.450.20 576 691 1.2E-29 T 06-07-2017 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Gene3D G3DSA:3.30.450.20 867 983 1.2E-32 T 06-07-2017 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF08448 PAS fold 458 569 2.7E-19 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00065 716 867 3.7E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00086 943 985 5.4E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00086 652 694 4.4E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 SMART SM00086 393 432 0.024 T 06-07-2017 IPR001610 PAC motif APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF08447 PAS fold 896 979 4.7E-16 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF08447 PAS fold 344 417 5.3E-6 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS20505 15f409f152bc8f159841ad8fbb42ac19 1406 Pfam PF08447 PAS fold 603 687 1.3E-13 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF55874 727 894 8.51E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:3.30.565.10 737 896 6.3E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF55781 304 414 6.25E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 787 894 2.4E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Pfam PF00512 His Kinase A (phospho-acceptor) domain 642 738 6.8E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:3.30.450.40 445 607 1.0E-32 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF47384 707 738 3.14E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF47384 636 677 3.14E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF55781 17 198 2.5E-46 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 PRINTS PR00344 Bacterial sensor protein C-terminal signature 842 852 3.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 873 3.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 PRINTS PR00344 Bacterial sensor protein C-terminal signature 880 893 3.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 838 3.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SMART SM00065 203 421 1.2E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SMART SM00065 460 614 7.5E-25 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SMART SM00065 30 199 2.2E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SUPERFAMILY SSF55781 439 614 3.57E-49 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Pfam PF01590 GAF domain 31 189 7.7E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Pfam PF01590 GAF domain 461 602 9.6E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:3.30.450.40 20 198 5.3E-24 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:3.30.450.40 199 352 1.3E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:3.30.450.40 386 427 1.3E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 SMART SM00387 784 896 4.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:1.10.287.130 706 735 3.1E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Gene3D G3DSA:1.10.287.130 638 668 3.1E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19220 8208f2b37b3d54e3891a972132ae610c 900 Pfam PF00360 Phytochrome region 311 413 4.0E-12 T 06-07-2017 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 SMART SM00228 287 377 6.8E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 184 208 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 123 135 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 144 164 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 335 347 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 244 261 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 1.4E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 Gene3D G3DSA:2.40.10.10 176 289 8.4E-44 T 06-07-2017 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 SUPERFAMILY SSF50156 257 388 8.94E-23 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 Gene3D G3DSA:2.30.42.10 290 391 1.1E-27 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 Pfam PF13365 Trypsin-like peptidase domain 114 251 8.9E-35 T 06-07-2017 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 Pfam PF13180 PDZ domain 287 384 2.5E-18 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 SUPERFAMILY SSF50494 63 278 2.84E-63 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS00820 953f3d7dd1b6358c03f11b0429bb5af1 392 Gene3D G3DSA:2.40.10.10 61 175 5.0E-33 T 06-07-2017 APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 SUPERFAMILY SSF102114 9 453 8.11E-131 T 06-07-2017 APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 Pfam PF06969 HemN C-terminal domain 368 440 1.2E-8 T 06-07-2017 IPR010723 HemN, C-terminal APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 Gene3D G3DSA:3.80.30.20 57 252 2.8E-27 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 465 3.3E-219 T 06-07-2017 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 PIRSF PIRSF000167 5 464 7.1E-163 T 06-07-2017 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 Pfam PF04055 Radical SAM superfamily 62 232 2.1E-16 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS17135 f1ea4be265e15506c7f5c4059de629f5 465 SMART SM00729 56 277 2.7E-43 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 Gene3D G3DSA:3.40.50.2300 264 383 2.2E-33 T 06-07-2017 APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 Pfam PF14332 Domain of unknown function (DUF4388) 2 170 1.3E-25 T 06-07-2017 IPR025497 Domain of unknown function DUF4388 APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 PIRSF PIRSF005897 3 385 1.0E-112 T 06-07-2017 IPR024186 Signal transduction response regulator, heterocyst pattern formation, PatA APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 Pfam PF00072 Response regulator receiver domain 268 377 1.1E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 SMART SM00448 266 379 9.6E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02630 f0255eb3a747a5f3b1696d0162094c57 410 SUPERFAMILY SSF52172 266 384 2.42E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07090 cb991539f71b9406ea60c1415bc2b067 180 Gene3D G3DSA:3.30.300.20 10 170 2.0E-40 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS07090 cb991539f71b9406ea60c1415bc2b067 180 Pfam PF02566 OsmC-like protein 71 177 1.5E-20 T 06-07-2017 IPR003718 OsmC/Ohr family APT55_RS07090 cb991539f71b9406ea60c1415bc2b067 180 SUPERFAMILY SSF82784 25 179 1.83E-33 T 06-07-2017 IPR003718 OsmC/Ohr family APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 ProSitePatterns PS00455 Putative AMP-binding domain signature. 605 616 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SUPERFAMILY SSF53474 1039 1322 3.54E-70 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:3.40.50.980 612 764 1.7E-37 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:3.40.50.980 461 611 6.0E-54 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SUPERFAMILY SSF56801 424 987 4.97E-163 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 ProSitePatterns PS00012 Phosphopantetheine attachment site. 998 1013 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Pfam PF00975 Thioesterase domain 1062 1319 7.0E-41 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SMART SM00824 Thioesterase 1074 1322 6.1E-5 T 06-07-2017 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Pfam PF00550 Phosphopantetheine attachment site 976 1037 5.7E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SUPERFAMILY SSF52777 199 454 2.67E-37 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:1.10.1200.10 978 1044 9.9E-25 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Pfam PF13193 AMP-binding enzyme C-terminal domain 871 946 4.2E-9 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SUPERFAMILY SSF52777 13 187 4.45E-31 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:3.30.300.30 858 977 2.7E-39 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Pfam PF00668 Condensation domain 11 304 1.3E-48 T 06-07-2017 IPR001242 Condensation domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 487 887 8.1E-136 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SUPERFAMILY SSF47336 967 1040 3.01E-18 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:2.30.38.10 775 853 3.5E-31 T 06-07-2017 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 SMART SM00823 Phosphopantetheine attachment site 974 1043 0.0011 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:3.40.50.1820 1253 1323 1.8E-60 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Gene3D G3DSA:3.40.50.1820 1047 1165 1.8E-60 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30705 78a7fb5bb6b37c19f87109fac1eb3e87 1326 Pfam PF00501 AMP-binding enzyme 466 863 4.1E-101 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS11470 f4c019050d78fb1e886ca5bca62d7544 66 SUPERFAMILY SSF109859 6 56 7.32E-9 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS11470 f4c019050d78fb1e886ca5bca62d7544 66 Pfam PF04485 Phycobilisome degradation protein nblA 7 56 5.1E-16 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS11470 f4c019050d78fb1e886ca5bca62d7544 66 Gene3D G3DSA:1.10.287.670 1 64 6.7E-17 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 Gene3D G3DSA:3.90.1150.10 257 365 7.5E-38 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 Pfam PF00266 Aminotransferase class-V 6 347 1.3E-65 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 PIRSF PIRSF000524 1 383 1.4E-146 T 06-07-2017 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 SUPERFAMILY SSF53383 4 364 8.21E-104 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 Gene3D G3DSA:3.40.640.10 16 256 8.3E-57 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS17675 63827d49822adf9f68026f9a48fc23b6 383 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 184 204 - T 06-07-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT55_RS15120 42b8b14fc7fa1e78aa8b52a4dc1fe283 86 ProDom PD060158 SOLUBLE HYDROGENASE GSL2555 ASR4747 5'REGION TSL2197 1 68 9.0E-16 T 06-07-2017 APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 TIGRFAM TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family 6 224 6.0E-111 T 06-07-2017 IPR014324 ABC transporter ATP-binding subunit, DevA type APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 SUPERFAMILY SSF52540 6 227 2.38E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 Pfam PF00005 ABC transporter 28 175 7.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 Gene3D G3DSA:3.40.50.300 5 225 5.2E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10345 81816376f05e4bbb563cd455b3910b05 232 SMART SM00382 35 223 1.0E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS26325 9f687283badc880d11106b752493cc5b 190 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 06-07-2017 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Gene3D G3DSA:3.30.63.10 48 86 4.1E-30 T 06-07-2017 APT55_RS26325 9f687283badc880d11106b752493cc5b 190 SMART SM00072 3 186 2.6E-73 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APT55_RS26325 9f687283badc880d11106b752493cc5b 190 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 179 6.6E-71 T 06-07-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Hamap MF_00328 Guanylate kinase [gmk]. 2 186 36.517 T 06-07-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Gene3D G3DSA:3.40.50.300 16 47 6.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Pfam PF00625 Guanylate kinase 4 182 9.8E-52 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APT55_RS26325 9f687283badc880d11106b752493cc5b 190 SUPERFAMILY SSF52540 3 183 3.0E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Gene3D G3DSA:3.40.50.300 1 15 1.9E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26325 9f687283badc880d11106b752493cc5b 190 Gene3D G3DSA:3.40.50.300 87 182 1.9E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SUPERFAMILY SSF47384 161 238 3.34E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SMART SM00387 287 396 3.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SUPERFAMILY SSF55874 238 394 3.8E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 375 6.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 6.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 394 6.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SMART SM00388 176 243 2.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Pfam PF00512 His Kinase A (phospho-acceptor) domain 177 242 2.5E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SMART SM00448 4 125 4.7E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Pfam PF00072 Response regulator receiver domain 6 122 1.0E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Gene3D G3DSA:1.10.287.130 167 236 6.1E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Gene3D G3DSA:3.30.565.10 244 395 2.4E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 SUPERFAMILY SSF52172 1 168 1.31E-25 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Gene3D G3DSA:3.40.50.2300 6 146 5.1E-24 T 06-07-2017 APT55_RS25650 5017032ff3e2284955c9bbe6bca5efe5 396 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 288 395 2.3E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 3 344 7.6E-156 T 06-07-2017 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 259 346 1.5E-20 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 212 4.8E-60 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 Gene3D G3DSA:3.30.1220.10 236 346 1.9E-32 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 SUPERFAMILY SSF52540 4 214 5.64E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 Gene3D G3DSA:3.40.50.300 4 232 8.1E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 SMART SM00833 258 346 1.2E-5 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS21240 241c585bf756fd1ac0e03a277c0a26f5 347 SUPERFAMILY SSF90002 258 346 4.97E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS20815 4d8f38481f04e0cad3aeacdcb322f1cd 564 Pfam PF11832 Protein of unknown function (DUF3352) 20 554 2.8E-160 T 06-07-2017 IPR021787 Protein of unknown function DUF3352 APT55_RS26515 1208e8a3f587b9bccfa856b809758dc8 309 Pfam PF01627 Hpt domain 8 108 2.4E-19 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26515 1208e8a3f587b9bccfa856b809758dc8 309 SMART SM00073 6 103 9.6E-27 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26515 1208e8a3f587b9bccfa856b809758dc8 309 SUPERFAMILY SSF47226 7 125 1.77E-30 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26515 1208e8a3f587b9bccfa856b809758dc8 309 Gene3D G3DSA:1.20.120.160 6 153 2.2E-36 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS15340 ce1fbd73e1e68d8d5833467343c60eb9 247 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS15340 ce1fbd73e1e68d8d5833467343c60eb9 247 Pfam PF00005 ABC transporter 37 180 9.9E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS15340 ce1fbd73e1e68d8d5833467343c60eb9 247 SMART SM00382 46 229 6.2E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS15340 ce1fbd73e1e68d8d5833467343c60eb9 247 Gene3D G3DSA:3.40.50.300 17 232 8.8E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15340 ce1fbd73e1e68d8d5833467343c60eb9 247 SUPERFAMILY SSF52540 18 237 2.4E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:1.10.8.60 731 809 4.9E-31 T 06-07-2017 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 572 590 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 587 605 2.6E-42 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 2.6E-42 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 542 560 2.6E-42 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 663 2.6E-42 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SUPERFAMILY SSF52540 160 437 6.51E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SUPERFAMILY SSF52540 487 805 1.56E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF07724 AAA domain (Cdc48 subfamily) 537 713 5.1E-56 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF02151 UvrB/uvrC motif 416 450 6.3E-6 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:1.10.1780.10 1 145 2.3E-51 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 1.7E-17 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 143 5.5E-20 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SMART SM00382 199 343 2.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SMART SM00382 538 720 8.9E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 331 3.3E-13 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SUPERFAMILY SSF81923 3 137 4.06E-31 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:3.40.50.300 161 342 1.6E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:1.10.8.60 343 426 1.1E-34 T 06-07-2017 APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 SMART SM01086 719 809 5.1E-35 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 719 799 4.8E-25 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:3.40.50.300 491 664 1.3E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11185 89438e4ca3db7bafbe94cb2e7a0b1524 822 Gene3D G3DSA:3.40.50.300 702 730 1.3E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 SUPERFAMILY SSF47781 81 158 9.73E-8 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Pfam PF13538 UvrD-like helicase C-terminal domain 653 700 1.2E-13 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 SMART SM00382 343 529 2.1E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 SUPERFAMILY SSF52540 551 725 3.1E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 SUPERFAMILY SSF52540 441 506 3.1E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Pfam PF13604 AAA domain 330 512 8.1E-45 T 06-07-2017 APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 4 729 26.686 T 06-07-2017 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 8 725 4.3E-204 T 06-07-2017 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 SUPERFAMILY SSF52540 181 488 2.02E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Pfam PF14490 Helix-hairpin-helix containing domain 141 231 2.3E-31 T 06-07-2017 IPR029493 RecD helicase-like helix-hairpin-helix domain APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Gene3D G3DSA:3.40.50.300 324 508 2.3E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Gene3D G3DSA:3.40.50.300 118 161 2.7E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01595 48a7efe7073fff2de8ee3c7225516045 748 Gene3D G3DSA:3.40.50.300 648 729 2.7E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 SUPERFAMILY SSF52540 13 279 1.14E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 9 531 1.0E-256 T 06-07-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Gene3D G3DSA:2.40.30.10 298 396 2.4E-21 T 06-07-2017 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 SUPERFAMILY SSF50447 264 394 2.12E-24 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 SUPERFAMILY SSF54980 396 469 3.96E-13 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Gene3D G3DSA:3.30.70.870 397 469 5.0E-11 T 06-07-2017 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Pfam PF16658 Class II release factor RF3, C-terminal domain 390 518 2.6E-44 T 06-07-2017 IPR032090 Peptide chain release factor 3, C-terminal APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Gene3D G3DSA:3.40.50.300 10 282 1.8E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Pfam PF00009 Elongation factor Tu GTP binding domain 15 278 1.3E-52 T 06-07-2017 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 151 1.5E-23 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 7 531 50.977 T 06-07-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 PRINTS PR00315 GTP-binding elongation factor signature 18 31 4.8E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 PRINTS PR00315 GTP-binding elongation factor signature 104 115 4.8E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 PRINTS PR00315 GTP-binding elongation factor signature 140 149 4.8E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 PRINTS PR00315 GTP-binding elongation factor signature 88 98 4.8E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS25965 f2ada7282dbf247c3b238a4da546876c 542 PRINTS PR00315 GTP-binding elongation factor signature 68 76 4.8E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 508 1.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SMART SM00387 555 668 2.1E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 645 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 610 620 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 606 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 665 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SUPERFAMILY SSF55874 498 667 8.91E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SUPERFAMILY SSF47384 426 510 3.34E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SMART SM00091 310 378 8.5E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 Gene3D G3DSA:3.30.565.10 495 669 9.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 Gene3D G3DSA:1.10.287.130 435 494 2.0E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SUPERFAMILY SSF55785 297 406 6.63E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 666 1.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 307 428 2.7E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 Gene3D G3DSA:3.30.450.20 298 406 5.4E-13 T 06-07-2017 APT55_RS03845 dec65dc4653aa7d8575f543c7def21a5 672 SMART SM00388 443 509 9.8E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03940 9f684821bd8e2a0c95ece923eb7ab6ad 81 Hamap MF_00474 Photosystem I reaction center subunit PsaK [psaK]. 10 81 20.323 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS03940 9f684821bd8e2a0c95ece923eb7ab6ad 81 SUPERFAMILY SSF81563 20 75 1.96E-17 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS03940 9f684821bd8e2a0c95ece923eb7ab6ad 81 TIGRFAM TIGR03049 PS_I_psaK: photosystem I reaction center subunit PsaK 1 81 4.9E-34 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS03940 9f684821bd8e2a0c95ece923eb7ab6ad 81 Gene3D G3DSA:1.20.860.20 20 81 4.5E-26 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS03940 9f684821bd8e2a0c95ece923eb7ab6ad 81 Pfam PF01241 Photosystem I psaG / psaK 14 80 3.0E-13 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 SUPERFAMILY SSF47757 4 69 3.66E-7 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 SMART SM00138 5 269 3.0E-76 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 74 264 3.8E-61 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 Gene3D G3DSA:1.10.155.10 6 70 7.1E-6 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 SUPERFAMILY SSF53335 74 262 1.61E-46 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 Gene3D G3DSA:3.40.50.150 72 267 2.1E-62 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 7 58 5.0E-5 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 2.2E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 PRINTS PR00996 Glutamate methyltransferase family signature 209 223 2.2E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 PRINTS PR00996 Glutamate methyltransferase family signature 66 78 2.2E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 PRINTS PR00996 Glutamate methyltransferase family signature 228 251 2.2E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10320 1137de6202dd323f5c5008e01dc73433 274 PRINTS PR00996 Glutamate methyltransferase family signature 141 157 2.2E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 Gene3D G3DSA:3.40.50.720 191 331 1.3E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 Pfam PF00107 Zinc-binding dehydrogenase 196 264 1.2E-13 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 Gene3D G3DSA:3.90.180.10 1 190 6.9E-54 T 06-07-2017 IPR011032 GroES-like APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 SMART SM00829 8 387 0.008 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 22 6.9E-13 T 06-07-2017 IPR027399 Alcohol dehydrogenase GroES-associated APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 SUPERFAMILY SSF51735 163 351 9.93E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 154 3.7E-29 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT55_RS23175 c75cf2447ebd32b9385554a5878dd730 389 SUPERFAMILY SSF50129 1 197 3.35E-60 T 06-07-2017 IPR011032 GroES-like APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00387 565 677 9.3E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Gene3D G3DSA:3.30.565.10 520 678 1.2E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Pfam PF00512 His Kinase A (phospho-acceptor) domain 425 521 2.1E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00091 274 340 7.4E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00091 16 82 13.0 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00091 136 208 89.0 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF55785 121 253 1.55E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF47384 490 521 3.53E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF47384 420 460 3.53E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 569 675 2.0E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF55874 510 675 1.7E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Gene3D G3DSA:3.30.450.20 118 265 4.3E-22 T 06-07-2017 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Pfam PF08447 PAS fold 164 243 1.3E-7 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Pfam PF08447 PAS fold 297 382 9.7E-19 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF55785 55 131 1.05E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 654 8.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 674 8.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 PRINTS PR00344 Bacterial sensor protein C-terminal signature 605 619 8.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 PRINTS PR00344 Bacterial sensor protein C-terminal signature 623 633 8.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Pfam PF08448 PAS fold 22 125 6.8E-6 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Gene3D G3DSA:3.30.450.20 272 419 3.0E-35 T 06-07-2017 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 Gene3D G3DSA:3.30.450.20 16 117 1.3E-6 T 06-07-2017 APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 270 396 2.8E-30 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SUPERFAMILY SSF55785 261 387 4.58E-29 T 06-07-2017 IPR000014 PAS domain APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00086 214 255 33.0 T 06-07-2017 IPR001610 PAC motif APT55_RS26825 f823ece1d0e9a606798e1ef91ff0f668 679 SMART SM00086 347 389 1.9E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 Pfam PF11741 AMIN domain 62 155 2.8E-5 T 06-07-2017 IPR021731 AMIN domain APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 Gene3D G3DSA:2.170.130.10 171 296 8.1E-34 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 Pfam PF00593 TonB dependent receptor 615 861 2.9E-21 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 SUPERFAMILY SSF56935 172 863 7.69E-99 T 06-07-2017 APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 846 863 - T 06-07-2017 IPR010917 TonB-dependent receptor, conserved site APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 Pfam PF07715 TonB-dependent Receptor Plug Domain 191 295 8.0E-19 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS30690 3539b45b1ec5913b8cd7b6358cf5f1f1 863 Gene3D G3DSA:2.40.170.20 297 863 5.7E-71 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00149 Fumarate lyase superfamily signature 331 347 7.0E-34 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 7.0E-34 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00149 Fumarate lyase superfamily signature 194 212 7.0E-34 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00149 Fumarate lyase superfamily signature 285 312 7.0E-34 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 ProSitePatterns PS00163 Fumarate lyases signature. 331 340 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Pfam PF00206 Lyase 26 356 5.6E-116 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 19 474 3.2E-244 T 06-07-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Pfam PF10415 Fumarase C C-terminus 422 475 2.3E-24 T 06-07-2017 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Gene3D G3DSA:1.20.200.10 153 430 4.4E-111 T 06-07-2017 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Hamap MF_00743 Fumarate hydratase class II [fumC]. 18 476 93.186 T 06-07-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00145 Argininosuccinate lyase family signature 147 169 7.2E-5 T 06-07-2017 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00145 Argininosuccinate lyase family signature 331 347 7.2E-5 T 06-07-2017 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 PRINTS PR00145 Argininosuccinate lyase family signature 189 209 7.2E-5 T 06-07-2017 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Gene3D G3DSA:1.10.275.10 18 152 6.3E-62 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 Gene3D G3DSA:1.10.40.30 431 477 3.2E-30 T 06-07-2017 APT55_RS18700 21feea1d95538376e1c3d1b8c6838cfa 477 SUPERFAMILY SSF48557 18 476 4.4E-160 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 Gene3D G3DSA:3.50.50.60 104 280 7.8E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 273 3.3E-22 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.4E-6 T 06-07-2017 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 255 2.4E-6 T 06-07-2017 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 2.4E-6 T 06-07-2017 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 SUPERFAMILY SSF51905 136 285 1.61E-22 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 243 261 3.4E-6 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 132 156 3.4E-6 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 7 17 - T 06-07-2017 IPR000408 Regulator of chromosome condensation, RCC1 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 Gene3D G3DSA:3.50.50.60 2 103 3.2E-8 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 TIGRFAM TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein 4 338 2.8E-127 T 06-07-2017 IPR017584 Pyridine nucleotide-disulphide oxidoreductase family protein, N-terminal APT55_RS04390 fe3ac84c2998153c2604bce9c54c19be 342 SUPERFAMILY SSF51905 2 174 1.17E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 SUPERFAMILY SSF81606 408 669 1.24E-52 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 SUPERFAMILY SSF56112 166 405 2.45E-27 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 SMART SM00220 166 396 2.8E-5 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 SMART SM00332 406 666 2.7E-22 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 Pfam PF00069 Protein kinase domain 200 398 2.3E-15 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 SMART SM00331 415 668 9.7E-27 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 Gene3D G3DSA:3.60.40.10 406 668 2.6E-55 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 Gene3D G3DSA:1.10.510.10 272 356 3.0E-12 T 06-07-2017 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 Gene3D G3DSA:3.30.200.20 199 271 1.7E-8 T 06-07-2017 APT55_RS27505 1089752225cd3fbafda187dad55c23cd 677 Pfam PF00481 Protein phosphatase 2C 433 660 1.4E-18 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 4.7E-26 T 06-07-2017 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 6.6E-10 T 06-07-2017 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 6.6E-10 T 06-07-2017 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 6.6E-10 T 06-07-2017 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 6.6E-10 T 06-07-2017 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 SUPERFAMILY SSF48557 3 427 7.38E-135 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 Pfam PF00206 Lyase 8 282 1.1E-58 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 Gene3D G3DSA:1.10.275.10 2 90 2.2E-36 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 4.8E-26 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 4.8E-26 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 4.8E-26 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 4.8E-26 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 Gene3D G3DSA:1.10.40.30 357 429 2.2E-31 T 06-07-2017 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 429 8.4E-180 T 06-07-2017 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 SMART SM00998 349 430 3.9E-35 T 06-07-2017 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS16780 014e7c8bc4b3e01f8bccc263fd4609d9 431 Gene3D G3DSA:1.20.200.10 91 356 8.2E-90 T 06-07-2017 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Pfam PF13090 Polyphosphate kinase C-terminal domain 365 712 2.0E-165 T 06-07-2017 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 SUPERFAMILY SSF56024 535 717 1.61E-76 T 06-07-2017 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Pfam PF02503 Polyphosphate kinase middle domain 133 344 2.0E-72 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Pfam PF13089 Polyphosphate kinase N-terminal domain 19 124 2.5E-39 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Gene3D G3DSA:3.30.1840.10 121 323 3.8E-74 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 SUPERFAMILY SSF143724 122 334 5.89E-64 T 06-07-2017 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Gene3D G3DSA:3.30.870.10 355 534 5.6E-83 T 06-07-2017 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Hamap MF_00347 Polyphosphate kinase [ppk]. 16 716 35.456 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 SUPERFAMILY SSF140356 15 119 2.88E-39 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 713 6.3E-267 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 PIRSF PIRSF015589 1 719 0.0 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 SUPERFAMILY SSF56024 357 531 4.04E-60 T 06-07-2017 APT55_RS22670 8d3cca8d5549ab5239f5e24eca53a3a9 719 Gene3D G3DSA:3.30.870.10 535 717 1.6E-80 T 06-07-2017 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PIRSF PIRSF002905 1 736 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 46 69 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 273 291 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 369 395 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 551 571 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 135 159 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 417 439 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 520 538 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 330 353 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 175 199 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 578 599 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 646 668 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 702 730 1.0E-158 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 Hamap MF_00482 Photosystem I P700 chlorophyll a apoprotein A2 [psaB]. 1 737 58.57 T 06-07-2017 IPR006244 Photosystem I PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 ProSitePatterns PS00419 Photosystem I psaA and psaB proteins signature. 562 571 - T 06-07-2017 IPR020586 Photosystem I PsaA/PsaB, conserved site MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 Gene3D G3DSA:1.20.1130.10 3 732 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 Pfam PF00223 Photosystem I psaA/psaB protein 8 730 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 TIGRFAM TIGR01336 psaB: photosystem I core protein PsaB 2 737 0.0 T 06-07-2017 IPR006244 Photosystem I PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12940 cd9269c72f45a7a2667da6fcd0f2fb63 737 SUPERFAMILY SSF81558 3 735 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS18625 41869a7f235dab018a366d44e00015b6 724 Pfam PF08378 Nuclease-related domain 298 401 5.7E-6 T 06-07-2017 IPR011528 Nuclease-related domain, NERD APT55_RS18625 41869a7f235dab018a366d44e00015b6 724 Gene3D G3DSA:3.10.450.50 682 719 4.2E-10 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS18625 41869a7f235dab018a366d44e00015b6 724 Pfam PF02810 SEC-C motif 701 719 2.3E-8 T 06-07-2017 IPR004027 SEC-C motif APT55_RS18625 41869a7f235dab018a366d44e00015b6 724 SUPERFAMILY SSF103642 699 720 4.25E-7 T 06-07-2017 APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 SMART SM00912 35 147 2.1E-26 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 65 143 1.2E-27 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 SUPERFAMILY SSF51126 33 332 1.48E-37 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 Gene3D G3DSA:2.160.20.10 43 346 3.3E-35 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 SUPERFAMILY SSF51126 408 520 5.96E-11 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 SUPERFAMILY SSF51126 555 583 5.96E-11 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26630 3ebbe54e06063a02110b459b9f2eed98 833 Pfam PF05860 haemagglutination activity domain 32 146 5.5E-34 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Pfam PF01627 Hpt domain 12 95 9.3E-16 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Gene3D G3DSA:3.30.565.10 512 697 2.8E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 697 2.5E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SUPERFAMILY SSF50341 697 845 4.32E-18 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Pfam PF00072 Response regulator receiver domain 872 984 6.9E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 4.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 695 4.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 676 4.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 652 4.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SMART SM00260 690 846 5.3E-11 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Gene3D G3DSA:2.30.30.40 801 845 6.1E-12 T 06-07-2017 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Gene3D G3DSA:2.30.30.40 698 719 6.1E-12 T 06-07-2017 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SMART SM00448 870 984 1.0E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SUPERFAMILY SSF47226 9 117 4.71E-24 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SMART SM00387 552 698 1.2E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Gene3D G3DSA:1.20.120.160 9 130 6.3E-28 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Pfam PF01584 CheW-like domain 703 848 5.6E-16 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SMART SM00073 7 104 3.2E-23 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SUPERFAMILY SSF52172 871 989 3.98E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 Gene3D G3DSA:3.40.50.2300 870 990 1.1E-33 T 06-07-2017 APT55_RS16985 14696da5b278f98737f3c93e9086cfd2 994 SUPERFAMILY SSF55874 514 696 4.19E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 SUPERFAMILY SSF53335 496 688 4.99E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 35 436 3.5E-135 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Pfam PF07993 Male sterility protein 1019 1256 1.5E-68 T 06-07-2017 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.30.300.30 852 914 6.1E-41 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.30.300.30 407 463 6.1E-41 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:2.30.38.10 316 402 1.5E-27 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 SUPERFAMILY SSF47336 905 977 9.42E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.40.50.720 1017 1333 2.1E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 SUPERFAMILY SSF56801 847 923 7.85E-155 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 SUPERFAMILY SSF56801 8 466 7.85E-155 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:1.10.1200.10 915 978 3.3E-25 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Pfam PF08242 Methyltransferase domain 528 626 2.2E-15 T 06-07-2017 IPR013217 Methyltransferase type 12 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Pfam PF00501 AMP-binding enzyme 16 412 2.5E-101 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Pfam PF00550 Phosphopantetheine attachment site 913 976 2.2E-12 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.40.50.150 501 651 4.0E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.40.50.980 8 174 6.6E-57 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 1017 1380 7.4E-101 T 06-07-2017 IPR010080 Thioester reductase-like domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 Gene3D G3DSA:3.40.50.980 175 315 3.0E-40 T 06-07-2017 APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 ProSitePatterns PS00012 Phosphopantetheine attachment site. 935 950 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 SUPERFAMILY SSF51735 1017 1307 2.15E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06930 5cdd3926e8b2d6cdfe130305ff758a3e 1408 ProSitePatterns PS00455 Putative AMP-binding domain signature. 153 164 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS21220 cedec3640957c9280a6d379cc1e5a0a1 285 Gene3D G3DSA:3.60.21.10 30 202 3.4E-23 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS21220 cedec3640957c9280a6d379cc1e5a0a1 285 Pfam PF00149 Calcineurin-like phosphoesterase 29 191 4.2E-10 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS21220 cedec3640957c9280a6d379cc1e5a0a1 285 SUPERFAMILY SSF56300 30 275 1.82E-30 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS26770 e83e0567e92f93f2e8f86a5c2cfb5ac8 426 Gene3D G3DSA:3.20.20.80 153 322 6.2E-16 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS26770 e83e0567e92f93f2e8f86a5c2cfb5ac8 426 SUPERFAMILY SSF51445 63 324 6.6E-19 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS26225 46fe5243905f172ba95aa3082886bd8f 399 SUPERFAMILY SSF51735 2 187 4.8E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26225 46fe5243905f172ba95aa3082886bd8f 399 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 133 1.2E-32 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 APT55_RS26225 46fe5243905f172ba95aa3082886bd8f 399 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 137 383 1.8E-35 T 06-07-2017 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 APT55_RS26225 46fe5243905f172ba95aa3082886bd8f 399 Gene3D G3DSA:3.40.50.720 2 187 2.8E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28370 d400bbc50371279bffbab11422890151 413 Gene3D G3DSA:3.30.565.10 253 411 1.5E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28370 d400bbc50371279bffbab11422890151 413 SUPERFAMILY SSF55781 31 168 1.55E-15 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28370 d400bbc50371279bffbab11422890151 413 Pfam PF00512 His Kinase A (phospho-acceptor) domain 202 261 1.2E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28370 d400bbc50371279bffbab11422890151 413 SUPERFAMILY SSF47384 193 262 1.29E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28370 d400bbc50371279bffbab11422890151 413 Gene3D G3DSA:3.30.450.40 7 165 2.9E-12 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28370 d400bbc50371279bffbab11422890151 413 Gene3D G3DSA:1.10.287.130 195 252 1.2E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28370 d400bbc50371279bffbab11422890151 413 SMART SM00388 200 265 5.2E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28370 d400bbc50371279bffbab11422890151 413 SUPERFAMILY SSF55874 270 409 5.11E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28370 d400bbc50371279bffbab11422890151 413 SMART SM00387 307 413 4.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28370 d400bbc50371279bffbab11422890151 413 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 392 2.1E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28370 d400bbc50371279bffbab11422890151 413 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 410 2.1E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28370 d400bbc50371279bffbab11422890151 413 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 359 2.1E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28370 d400bbc50371279bffbab11422890151 413 SMART SM00065 28 168 5.3E-5 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28370 d400bbc50371279bffbab11422890151 413 Pfam PF01590 GAF domain 31 158 1.5E-5 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28370 d400bbc50371279bffbab11422890151 413 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 409 6.4E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Gene3D G3DSA:1.10.260.30 326 431 1.8E-33 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 7.9E-21 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 SUPERFAMILY SSF47446 326 431 1.01E-32 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 2.3E-181 T 06-07-2017 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 SMART SM00963 1 86 1.5E-32 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Pfam PF02978 Signal peptide binding domain 326 427 5.3E-28 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 SMART SM00382 99 246 5.0E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 SUPERFAMILY SSF52540 42 351 2.19E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Gene3D G3DSA:1.20.120.140 2 88 7.9E-35 T 06-07-2017 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 4.7E-77 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 SMART SM00962 100 295 9.8E-114 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Gene3D G3DSA:3.40.50.300 96 296 6.5E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14455 c8bb3cdfd11f7f26c695dd0fd7a6f9a3 495 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 447 34.581 T 06-07-2017 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 SUPERFAMILY SSF55781 42 122 1.74E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 SUPERFAMILY SSF55781 156 230 1.74E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 278 472 4.7E-54 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 SMART SM00331 238 471 3.9E-52 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 SUPERFAMILY SSF81606 253 472 1.44E-7 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 Gene3D G3DSA:3.60.40.10 391 470 1.8E-4 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS10775 89c05b6f26eef6df9e6b1c022008369d 474 Gene3D G3DSA:3.30.450.40 39 214 2.6E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS26950 63673893eeb1ba75e8b2adfc7a3beed1 306 Pfam PF13177 DNA polymerase III, delta subunit 9 177 6.2E-36 T 06-07-2017 APT55_RS26950 63673893eeb1ba75e8b2adfc7a3beed1 306 Gene3D G3DSA:3.40.50.300 4 176 1.4E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26950 63673893eeb1ba75e8b2adfc7a3beed1 306 SUPERFAMILY SSF52540 4 214 1.87E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 Gene3D G3DSA:3.40.30.10 174 241 2.6E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 167 243 1.6E-35 T 06-07-2017 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 ProSitePatterns PS00195 Glutaredoxin active site. 176 192 - T 06-07-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 SUPERFAMILY SSF52833 8 241 1.25E-46 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 Pfam PF00462 Glutaredoxin 175 232 1.5E-14 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 PRINTS PR00160 Glutaredoxin signature 174 192 2.1E-11 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 PRINTS PR00160 Glutaredoxin signature 215 228 2.1E-11 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 PRINTS PR00160 Glutaredoxin signature 229 242 2.1E-11 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 Pfam PF08534 Redoxin 7 161 1.9E-32 T 06-07-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT55_RS25335 8fa6106b8451b0a3d8a94b10763c3c82 245 Gene3D G3DSA:3.40.30.10 7 164 1.1E-65 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 SUPERFAMILY SSF48208 11 289 9.64E-51 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 Pfam PF16990 Carbohydrate binding module (family 35) 328 401 4.7E-7 T 06-07-2017 IPR005084 Carbohydrate binding module family 6 GO:0030246 APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 Gene3D G3DSA:1.50.10.10 11 237 6.6E-39 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 Gene3D G3DSA:2.60.120.260 330 409 1.2E-12 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 Pfam PF03663 Glycosyl hydrolase family 76 17 315 7.2E-57 T 06-07-2017 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 APT55_RS21280 47a47b50750b880408c907bdd9a36b3a 427 SUPERFAMILY SSF49785 329 410 1.38E-12 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS24600 f03ea3f841c32088d314243991406580 364 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 86 105 - T 06-07-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 APT55_RS24600 f03ea3f841c32088d314243991406580 364 Pfam PF01180 Dihydroorotate dehydrogenase 51 344 9.5E-101 T 06-07-2017 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 APT55_RS24600 f03ea3f841c32088d314243991406580 364 SUPERFAMILY SSF51395 11 361 3.36E-101 T 06-07-2017 APT55_RS24600 f03ea3f841c32088d314243991406580 364 Gene3D G3DSA:3.20.20.70 2 361 1.9E-128 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS24600 f03ea3f841c32088d314243991406580 364 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 12 360 1.8E-124 T 06-07-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS24600 f03ea3f841c32088d314243991406580 364 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 296 316 - T 06-07-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 APT55_RS24600 f03ea3f841c32088d314243991406580 364 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 340 47.251 T 06-07-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SUPERFAMILY SSF55874 215 383 8.77E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Pfam PF00512 His Kinase A (phospho-acceptor) domain 161 223 1.3E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Gene3D G3DSA:3.40.50.2300 404 527 1.1E-31 T 06-07-2017 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SUPERFAMILY SSF52172 406 525 1.35E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SMART SM00448 407 521 2.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Gene3D G3DSA:3.30.450.20 9 125 1.1E-12 T 06-07-2017 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 322 2.6E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 381 2.6E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 336 2.6E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 361 2.6E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SUPERFAMILY SSF55785 9 124 9.07E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Pfam PF00072 Response regulator receiver domain 409 522 2.3E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Gene3D G3DSA:1.10.287.130 152 222 3.0E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Pfam PF08448 PAS fold 11 125 4.7E-8 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SMART SM00388 160 226 2.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SMART SM00091 5 71 0.0019 T 06-07-2017 IPR000014 PAS domain APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 271 382 2.7E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SUPERFAMILY SSF47384 149 226 1.9E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 Gene3D G3DSA:3.30.565.10 228 386 9.9E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10280 87aa3efea246ce83e73d5ff1f8efa330 529 SMART SM00387 271 384 1.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13860 fe43a74a6254cf41910edcde298c2495 497 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 344 358 - T 06-07-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS13860 fe43a74a6254cf41910edcde298c2495 497 SUPERFAMILY SSF55120 303 495 8.8E-55 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS13860 fe43a74a6254cf41910edcde298c2495 497 Pfam PF00849 RNA pseudouridylate synthase 311 448 1.1E-28 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Gene3D G3DSA:3.40.50.300 37 180 2.2E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 835 874 1.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 1092 1131 3.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 753 792 2.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 924 962 130.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 1133 1180 5.3E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 551 586 59.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 964 1002 2.8E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 876 915 0.033 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 588 627 2.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 629 667 10.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 1010 1049 4.8E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 794 833 5.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SMART SM00320 1051 1090 1.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Gene3D G3DSA:2.130.10.10 993 1188 4.1E-59 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 1093 1130 2.8E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 838 874 5.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 795 832 3.8E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 589 626 2.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 1053 1089 9.7E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 1134 1180 0.0095 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 1012 1048 6.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF00400 WD domain, G-beta repeat 977 1002 0.0015 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SUPERFAMILY SSF50969 554 836 3.88E-40 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Gene3D G3DSA:2.130.10.10 560 693 2.5E-26 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Pfam PF14516 AAA-like domain 7 363 1.3E-28 T 06-07-2017 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 Gene3D G3DSA:2.130.10.10 751 992 7.2E-62 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SUPERFAMILY SSF50998 760 887 6.12E-70 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SUPERFAMILY SSF50998 972 1155 6.12E-70 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 PRINTS PR00320 G protein beta WD-40 repeat signature 1077 1091 3.9E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 PRINTS PR00320 G protein beta WD-40 repeat signature 1118 1132 3.9E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 PRINTS PR00320 G protein beta WD-40 repeat signature 820 834 3.9E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28400 d7ea42b381ad0af37b7c0f85ad11426d 1216 SUPERFAMILY SSF52540 8 254 9.57E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 06-07-2017 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 Pfam PF01259 SAICAR synthetase 6 236 4.1E-64 T 06-07-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 06-07-2017 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 Gene3D G3DSA:3.30.200.20 6 93 3.3E-37 T 06-07-2017 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 SUPERFAMILY SSF56104 4 241 3.27E-81 T 06-07-2017 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 239 31.138 T 06-07-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 239 1.8E-75 T 06-07-2017 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 APT55_RS05840 4d80d7278f97389e1247ef5e6c6d5eb3 242 Gene3D G3DSA:3.30.470.20 94 225 3.6E-48 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS28175 b3713dff6cb5b5b60ec18545c87d2831 233 Gene3D G3DSA:3.90.420.10 72 231 4.8E-55 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS28175 b3713dff6cb5b5b60ec18545c87d2831 233 SUPERFAMILY SSF56524 60 232 2.35E-56 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS28175 b3713dff6cb5b5b60ec18545c87d2831 233 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 28 5.2E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APT55_RS28175 b3713dff6cb5b5b60ec18545c87d2831 233 Pfam PF00174 Oxidoreductase molybdopterin binding domain 77 215 1.3E-36 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS27360 f1132fa0472839af51af10c1ec4ef7a6 172 Pfam PF14221 Domain of unknown function (DUF4330) 1 168 1.1E-51 T 06-07-2017 IPR025480 Protein of unknown function DUF4330 APT55_RS17280 067fa5317512189e963606dcf19728a4 302 Pfam PF00849 RNA pseudouridylate synthase 90 240 9.3E-26 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS17280 067fa5317512189e963606dcf19728a4 302 SMART SM00363 20 79 6.5E-4 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS17280 067fa5317512189e963606dcf19728a4 302 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 128 142 - T 06-07-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS17280 067fa5317512189e963606dcf19728a4 302 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 297 1.3E-68 T 06-07-2017 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS17280 067fa5317512189e963606dcf19728a4 302 SUPERFAMILY SSF55120 85 297 3.29E-57 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 20 615 33.602 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 SUPERFAMILY SSF55681 222 507 7.57E-96 T 06-07-2017 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 303 510 1.2E-38 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 SMART SM00863 123 198 1.2E-12 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 140 198 3.5E-8 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Pfam PF03129 Anticodon binding domain 522 611 9.8E-21 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Gene3D G3DSA:3.30.980.10 165 203 3.1E-33 T 06-07-2017 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Gene3D G3DSA:3.30.980.10 24 83 3.1E-33 T 06-07-2017 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 SUPERFAMILY SSF55186 18 220 7.06E-52 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 153 612 1.1E-194 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Gene3D G3DSA:3.30.930.10 221 511 1.8E-115 T 06-07-2017 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 PRINTS PR01047 Threonyl-tRNA synthetase signature 310 338 7.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 PRINTS PR01047 Threonyl-tRNA synthetase signature 445 473 7.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 PRINTS PR01047 Threonyl-tRNA synthetase signature 488 501 7.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 PRINTS PR01047 Threonyl-tRNA synthetase signature 343 366 7.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 PRINTS PR01047 Threonyl-tRNA synthetase signature 515 527 7.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Gene3D G3DSA:3.40.50.800 512 613 1.7E-32 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 Gene3D G3DSA:3.30.54.20 85 164 2.8E-13 T 06-07-2017 APT55_RS07300 5f51c3108f3a3e39649bd748cee6daf7 619 SUPERFAMILY SSF52954 510 613 6.19E-29 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SUPERFAMILY SSF52172 698 824 3.56E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Pfam PF00512 His Kinase A (phospho-acceptor) domain 452 515 1.2E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Gene3D G3DSA:1.10.287.130 446 512 5.5E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SMART SM00448 699 812 9.3E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Pfam PF00072 Response regulator receiver domain 701 812 1.7E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 628 3.2E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 3.2E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 634 652 3.2E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 671 3.2E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SMART SM00387 563 674 5.6E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Gene3D G3DSA:3.30.565.10 517 674 4.1E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 564 671 1.4E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SUPERFAMILY SSF47384 437 517 2.75E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Gene3D G3DSA:3.40.50.2300 697 819 2.4E-32 T 06-07-2017 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SMART SM00388 452 516 2.5E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SUPERFAMILY SSF55874 505 670 9.95E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 Pfam PF05226 CHASE2 domain 27 337 3.6E-52 T 06-07-2017 IPR007890 CHASE2 APT55_RS03270 07651f530281f75ce2444b70ac030a22 908 SMART SM01080 35 339 6.3E-54 T 06-07-2017 IPR007890 CHASE2 APT55_RS23775 b46856a013b001fcd1089613d5efaa85 220 SUPERFAMILY SSF53474 4 204 5.45E-24 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23775 b46856a013b001fcd1089613d5efaa85 220 Gene3D G3DSA:3.40.50.1820 4 98 8.6E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23775 b46856a013b001fcd1089613d5efaa85 220 Gene3D G3DSA:3.40.50.1820 143 206 8.6E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23775 b46856a013b001fcd1089613d5efaa85 220 Pfam PF05728 Uncharacterised protein family (UPF0227) 2 201 2.1E-41 T 06-07-2017 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA APT55_RS29050 91d87ff98fbcc9638e246430c9a0d4af 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 12 220 6.7E-41 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS29050 91d87ff98fbcc9638e246430c9a0d4af 316 Gene3D G3DSA:3.90.25.10 182 305 3.7E-23 T 06-07-2017 APT55_RS29050 91d87ff98fbcc9638e246430c9a0d4af 316 SUPERFAMILY SSF51735 6 308 3.25E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS29050 91d87ff98fbcc9638e246430c9a0d4af 316 Gene3D G3DSA:3.40.50.720 11 181 6.9E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SMART SM00387 332 444 2.4E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 80 202 6.0E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SUPERFAMILY SSF47384 203 287 5.49E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Pfam PF13426 PAS domain 91 193 2.1E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Gene3D G3DSA:3.30.450.20 71 193 3.5E-19 T 06-07-2017 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 441 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SMART SM00091 81 147 2.5E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Gene3D G3DSA:1.10.287.130 212 281 4.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SUPERFAMILY SSF55874 275 442 3.27E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Gene3D G3DSA:3.30.565.10 287 443 3.2E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 442 9.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SUPERFAMILY SSF55785 69 193 8.03E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 285 1.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01325 9d72ab6852d23edd7cbf935b5e01977a 447 SMART SM00388 218 286 5.4E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07705 22669cf22edd3d37f9a7af81b487796f 157 Pfam PF07823 Cyclic phosphodiesterase-like protein 2 60 2.0E-6 T 06-07-2017 IPR012386 2',3'-cyclic-nucleotide 3'-phosphodiesterase GO:0004112 APT55_RS07705 22669cf22edd3d37f9a7af81b487796f 157 SUPERFAMILY SSF55144 1 136 3.45E-13 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS07705 22669cf22edd3d37f9a7af81b487796f 157 Gene3D G3DSA:3.90.1140.10 1 120 4.4E-18 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 173 213 1.1E-19 T 06-07-2017 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 11 213 41.094 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 PIRSF PIRSF000190 1 213 4.6E-85 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 4 213 1.5E-93 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 34 120 1.3E-27 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 Gene3D G3DSA:2.30.110.10 17 213 9.2E-88 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 183 196 - T 06-07-2017 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS10570 05ccad551d785ad5a0773838160e7ee8 213 SUPERFAMILY SSF50475 17 213 3.93E-70 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS12475 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS12475 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS00890 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS00890 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS20520 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS20520 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS18935 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS18935 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31115 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS31115 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS28835 b13b8bf433eff602ae490b0a2f279029 303 Pfam PF13612 Transposase DDE domain 112 264 3.6E-72 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS28835 b13b8bf433eff602ae490b0a2f279029 303 SUPERFAMILY SSF53098 113 281 9.86E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS19035 ea312fd23b11698785161340ad3df281 130 Pfam PF03551 Transcriptional regulator PadR-like family 27 94 8.8E-16 T 06-07-2017 IPR005149 Transcription regulator PadR, N-terminal APT55_RS19035 ea312fd23b11698785161340ad3df281 130 Gene3D G3DSA:1.10.10.10 23 116 5.7E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19035 ea312fd23b11698785161340ad3df281 130 SUPERFAMILY SSF46785 9 111 3.86E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00865 f353919eefafad1a4d012a13fb483830 320 Pfam PF05746 DALR anticodon binding domain 199 319 5.5E-9 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT55_RS00865 f353919eefafad1a4d012a13fb483830 320 Gene3D G3DSA:1.10.730.10 196 319 7.5E-9 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS00865 f353919eefafad1a4d012a13fb483830 320 SMART SM00836 198 320 0.0012 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT55_RS00865 f353919eefafad1a4d012a13fb483830 320 SUPERFAMILY SSF47323 196 309 5.43E-8 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 PIRSF PIRSF000077 1 107 1.0E-37 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 105 1.4E-29 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 Pfam PF00085 Thioredoxin 4 105 9.6E-31 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 PRINTS PR00421 Thioredoxin family signature 31 40 3.1E-5 T 06-07-2017 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 PRINTS PR00421 Thioredoxin family signature 23 31 3.1E-5 T 06-07-2017 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 PRINTS PR00421 Thioredoxin family signature 71 82 3.1E-5 T 06-07-2017 APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 SUPERFAMILY SSF52833 2 107 2.65E-32 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 Gene3D G3DSA:3.40.30.10 2 105 2.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS21890 d3e0a6a93a66a29ef247d323fc4b9418 110 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 236 252 - T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 Gene3D G3DSA:1.20.58.410 10 107 2.8E-22 T 06-07-2017 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 Gene3D G3DSA:3.30.160.20 220 297 1.4E-29 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 Pfam PF03462 PCRF domain 22 211 4.1E-60 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 357 36.72 T 06-07-2017 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 13 356 1.9E-132 T 06-07-2017 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 SMART SM00937 76 186 1.0E-53 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 Pfam PF00472 RF-1 domain 221 329 1.6E-34 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS08965 28dcdb0eb954c38df096f4b76d003c14 362 SUPERFAMILY SSF75620 21 356 1.31E-122 T 06-07-2017 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13374 Tetratricopeptide repeat 925 960 2.1E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Gene3D G3DSA:3.40.50.10140 14 119 1.0E-8 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 837 870 2.2E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 795 828 0.0011 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 711 744 4.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 669 702 0.071 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 879 912 1.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 753 786 0.0017 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 921 954 0.19 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SMART SM00028 627 660 5.9E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SUPERFAMILY SSF48452 623 950 4.17E-38 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13676 TIR domain 14 120 2.2E-12 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Gene3D G3DSA:1.25.40.10 581 825 1.7E-46 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 PRINTS PR00381 Kinesin light chain signature 707 724 3.2E-18 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 PRINTS PR00381 Kinesin light chain signature 751 771 3.2E-18 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 PRINTS PR00381 Kinesin light chain signature 642 660 3.2E-18 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 PRINTS PR00381 Kinesin light chain signature 786 807 3.2E-18 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 PRINTS PR00381 Kinesin light chain signature 620 639 3.2E-18 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SUPERFAMILY SSF52540 197 446 6.95E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13424 Tetratricopeptide repeat 626 699 1.8E-20 T 06-07-2017 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13424 Tetratricopeptide repeat 709 784 2.0E-22 T 06-07-2017 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13424 Tetratricopeptide repeat 835 910 5.4E-23 T 06-07-2017 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 SUPERFAMILY SSF52200 14 120 3.4E-13 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Gene3D G3DSA:1.25.40.10 832 959 6.3E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF13176 Tetratricopeptide repeat 797 831 7.4E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24520 cb71f66d04b8d6f3bd12d95317c825c3 1003 Pfam PF00931 NB-ARC domain 212 452 2.6E-16 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 31 284 3.0E-71 T 06-07-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 Gene3D G3DSA:1.10.8.10 12 93 3.1E-8 T 06-07-2017 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 191 197 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 Pfam PF05175 Methyltransferase small domain 112 197 1.4E-13 T 06-07-2017 IPR007848 Methyltransferase small domain GO:0008168 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 8 288 39.305 T 06-07-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 10 287 9.5E-76 T 06-07-2017 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 SUPERFAMILY SSF53335 11 285 1.67E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22655 b4a53d2566e396a55d933ddbd5a016c4 289 Gene3D G3DSA:3.40.50.150 94 287 3.4E-64 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 Gene3D G3DSA:3.30.565.10 245 415 7.6E-50 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 Gene3D G3DSA:1.10.287.130 186 244 1.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 SUPERFAMILY SSF55874 248 414 4.98E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 SMART SM00387 304 416 3.8E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 304 414 7.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 SUPERFAMILY SSF47384 184 259 4.32E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 SMART SM00388 194 259 2.8E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 Pfam PF00512 His Kinase A (phospho-acceptor) domain 195 259 4.6E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 413 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 369 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00210 0f4b0d47d9580173ca4a9e1045e128a0 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 394 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 Pfam PF01126 Heme oxygenase 3 208 3.4E-72 T 06-07-2017 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 63 88 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 38 63 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 137 158 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 3 28 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 162 183 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 116 137 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PRINTS PR00088 Haem oxygenase signature 194 212 6.5E-48 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 Gene3D G3DSA:1.20.910.10 2 222 1.6E-68 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 SUPERFAMILY SSF48613 3 236 5.38E-69 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 ProSitePatterns PS00593 Heme oxygenase signature. 119 129 - T 06-07-2017 IPR018207 Haem oxygenase conserved site GO:0004392|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS17130 aac45bf93cb1295b50c183bdc49017cb 249 PIRSF PIRSF000343 1 234 1.4E-76 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 SUPERFAMILY SSF51366 6 221 5.18E-78 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 206 2.4E-89 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 139 161 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 8 219 1.6E-93 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 35 49 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 PIRSF PIRSF001461 2 230 9.8E-98 T 06-07-2017 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS04895 358eea17997205fdd61276b7f3169e63 231 Gene3D G3DSA:3.20.20.70 4 221 1.2E-93 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS29070 129840c1016ba46e1337b362bb463217 94 Pfam PF13319 Protein of unknown function (DUF4090) 8 91 7.3E-45 T 06-07-2017 IPR025149 Protein of unknown function DUF4090 APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 Pfam PF07715 TonB-dependent Receptor Plug Domain 180 283 4.7E-21 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 Pfam PF00593 TonB dependent receptor 603 843 3.3E-16 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 Gene3D G3DSA:2.170.130.10 161 283 2.5E-31 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 Pfam PF11741 AMIN domain 60 155 3.3E-5 T 06-07-2017 IPR021731 AMIN domain APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 Gene3D G3DSA:2.40.170.20 284 845 4.5E-65 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25060 13e4cc27f6f2fae8a37fca1a418cc20a 847 SUPERFAMILY SSF56935 158 845 4.4E-92 T 06-07-2017 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 803 42.799 T 06-07-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Pfam PF03484 tRNA synthetase B5 domain 416 491 4.5E-19 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SUPERFAMILY SSF56037 206 402 7.85E-67 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SMART SM00874 413 491 8.9E-24 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.30.56.20 414 494 2.2E-23 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.30.70.380 718 809 1.3E-31 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.30.56.10 160 189 1.5E-24 T 06-07-2017 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.30.56.10 1 38 1.5E-24 T 06-07-2017 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SUPERFAMILY SSF50249 36 197 6.0E-44 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Pfam PF03483 B3/4 domain 217 396 3.6E-63 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:2.40.50.140 43 159 1.0E-38 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SUPERFAMILY SSF54991 711 809 2.35E-31 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 809 2.8E-241 T 06-07-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Pfam PF03147 Ferredoxin-fold anticodon binding domain 716 809 6.3E-30 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.50.40.10 204 401 3.7E-77 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SUPERFAMILY SSF46955 414 494 2.2E-13 T 06-07-2017 IPR009061 Putative DNA-binding domain APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SUPERFAMILY SSF55681 487 699 1.74E-45 T 06-07-2017 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Gene3D G3DSA:3.30.930.10 509 699 2.1E-50 T 06-07-2017 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 Pfam PF01588 Putative tRNA binding domain 45 142 1.0E-26 T 06-07-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SMART SM00873 217 396 1.0E-85 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APT55_RS08565 272d5b1986268165d3d8bbbf1bab3f9c 810 SMART SM00896 716 809 3.5E-42 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 SUPERFAMILY SSF54001 6 261 1.08E-85 T 06-07-2017 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 Gene3D G3DSA:3.30.2140.10 7 90 4.4E-51 T 06-07-2017 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 Gene3D G3DSA:3.30.2140.10 188 262 4.4E-51 T 06-07-2017 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 PRINTS PR01543 Arylamine N-acetyltransferase signature 74 96 8.1E-13 T 06-07-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 PRINTS PR01543 Arylamine N-acetyltransferase signature 26 49 8.1E-13 T 06-07-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 PRINTS PR01543 Arylamine N-acetyltransferase signature 50 73 8.1E-13 T 06-07-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 PRINTS PR01543 Arylamine N-acetyltransferase signature 107 132 8.1E-13 T 06-07-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 APT55_RS14370 f491519607fa4b614eb80d10116ff086 276 Pfam PF00797 N-acetyltransferase 26 260 7.8E-78 T 06-07-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 SUPERFAMILY SSF81301 28 143 2.18E-24 T 06-07-2017 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 171 230 6.5E-17 T 06-07-2017 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 Pfam PF01743 Poly A polymerase head domain 36 146 1.3E-18 T 06-07-2017 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 Gene3D G3DSA:3.30.460.10 33 148 1.9E-23 T 06-07-2017 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 SUPERFAMILY SSF81891 144 430 8.63E-46 T 06-07-2017 APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 282 426 4.1E-16 T 06-07-2017 IPR032810 CCA-adding enzyme, C-terminal APT55_RS23465 f4d80581bda358a0362647a180cef5ca 432 Gene3D G3DSA:1.10.3090.10 151 400 1.1E-31 T 06-07-2017 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 SMART SM00836 468 588 1.6E-30 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Gene3D G3DSA:1.10.730.10 462 588 3.8E-33 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 SUPERFAMILY SSF47323 463 588 2.03E-31 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Hamap MF_00123 Arginine--tRNA ligase [argS]. 6 588 27.162 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Gene3D G3DSA:3.40.50.620 113 460 1.2E-120 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 3.5E-29 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 3.5E-29 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 3.5E-29 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 3.5E-29 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Pfam PF05746 DALR anticodon binding domain 468 588 1.6E-30 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 SMART SM01016 6 90 6.1E-33 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 SUPERFAMILY SSF52374 114 462 5.28E-95 T 06-07-2017 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 90 1.3E-24 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 SUPERFAMILY SSF55190 8 101 2.35E-24 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Pfam PF00750 tRNA synthetases class I (R) 110 454 4.9E-131 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 Gene3D G3DSA:3.30.1360.70 5 108 2.9E-31 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 126 137 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS15200 86739c38f9a3401ce6673ee983ff9c63 588 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 588 3.1E-175 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 138 272 9.3E-33 T 06-07-2017 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 157 174 - T 06-07-2017 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 SUPERFAMILY SSF55347 136 245 4.8E-37 T 06-07-2017 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 273 2.9E-92 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 Gene3D G3DSA:3.30.360.10 152 243 3.2E-32 T 06-07-2017 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 SUPERFAMILY SSF51735 4 162 5.3E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 270 26.998 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 PIRSF PIRSF000161 3 273 8.0E-80 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 Gene3D G3DSA:3.40.50.720 4 151 3.9E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00795 d9b54fe181fe7ccd217a18a9964d2283 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 135 8.4E-37 T 06-07-2017 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 Pfam PF00258 Flavodoxin 6 160 9.0E-34 T 06-07-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 PIRSF PIRSF038996 1 170 1.5E-64 T 06-07-2017 IPR010086 Flavodoxin, long chain GO:0010181 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 SUPERFAMILY SSF52218 1 167 1.68E-51 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS05535 2bb7beca715f443052807fa21c330288 170 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 06-07-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 1.4E-68 T 06-07-2017 IPR010086 Flavodoxin, long chain GO:0010181 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 Gene3D G3DSA:3.40.50.360 1 168 2.1E-61 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS05535 2bb7beca715f443052807fa21c330288 170 PRINTS PR00369 Flavodoxin signature 52 63 8.9E-6 T 06-07-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 PRINTS PR00369 Flavodoxin signature 81 91 8.9E-6 T 06-07-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 PRINTS PR00369 Flavodoxin signature 107 126 8.9E-6 T 06-07-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT55_RS05535 2bb7beca715f443052807fa21c330288 170 PRINTS PR00369 Flavodoxin signature 5 18 8.9E-6 T 06-07-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 SUPERFAMILY SSF54675 13 146 5.55E-39 T 06-07-2017 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 SUPERFAMILY SSF51690 147 439 4.71E-83 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 PIRSF PIRSF000484 6 443 5.1E-122 T 06-07-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 164 284 1.6E-10 T 06-07-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 Gene3D G3DSA:3.20.140.10 14 366 1.6E-98 T 06-07-2017 APT55_RS22800 b3a26309ab7fa96f2f2e8e8b46c4743a 444 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 14 363 8.9E-109 T 06-07-2017 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT55_RS03185 4495e992fb8fea543c73e4c2144a5e1d 473 Pfam PF00665 Integrase core domain 121 250 1.9E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS03185 4495e992fb8fea543c73e4c2144a5e1d 473 SUPERFAMILY SSF53098 121 289 9.48E-14 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS03185 4495e992fb8fea543c73e4c2144a5e1d 473 Gene3D G3DSA:3.30.420.10 152 288 5.3E-13 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31305 4495e992fb8fea543c73e4c2144a5e1d 473 Pfam PF00665 Integrase core domain 121 250 1.9E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS31305 4495e992fb8fea543c73e4c2144a5e1d 473 SUPERFAMILY SSF53098 121 289 9.48E-14 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31305 4495e992fb8fea543c73e4c2144a5e1d 473 Gene3D G3DSA:3.30.420.10 152 288 5.3E-13 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 Pfam PF07969 Amidohydrolase family 49 403 4.6E-40 T 06-07-2017 IPR013108 Amidohydrolase 3 APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 SUPERFAMILY SSF51556 56 375 1.36E-100 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 Gene3D G3DSA:3.20.20.140 69 366 1.5E-112 T 06-07-2017 APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 Gene3D G3DSA:2.30.40.10 3 68 1.1E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 SUPERFAMILY SSF51338 1 56 4.32E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23270 7e7922b4b911f5585ce6b9f5029dfd25 417 SUPERFAMILY SSF51338 366 405 4.32E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 Pfam PF02464 Competence-damaged protein 257 410 1.9E-52 T 06-07-2017 IPR008136 CinA, C-terminal APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 263 411 4.0E-49 T 06-07-2017 IPR008136 CinA, C-terminal APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 1.2E-26 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 SMART SM00852 4 172 2.1E-45 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 Gene3D G3DSA:3.90.950.20 252 413 5.0E-56 T 06-07-2017 IPR008136 CinA, C-terminal APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 Gene3D G3DSA:3.40.980.10 1 202 1.8E-33 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 PIRSF PIRSF006728 1 415 8.9E-158 T 06-07-2017 IPR008135 Competence-induced protein CinA APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 SUPERFAMILY SSF142433 252 412 1.57E-52 T 06-07-2017 IPR008136 CinA, C-terminal APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 415 176.652 T 06-07-2017 IPR008135 Competence-induced protein CinA APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 412 2.4E-163 T 06-07-2017 IPR008135 Competence-induced protein CinA APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 SUPERFAMILY SSF53218 1 203 1.7E-41 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS16190 c3a2525e51e1bf75a857eed91df29778 415 Pfam PF00994 Probable molybdopterin binding domain 4 170 8.8E-37 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19845 d03418e40f60cec7e583bf94d35e3f91 267 Gene3D G3DSA:1.10.150.130 13 91 5.9E-15 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS19845 d03418e40f60cec7e583bf94d35e3f91 267 SUPERFAMILY SSF56349 8 259 2.94E-46 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS19845 d03418e40f60cec7e583bf94d35e3f91 267 Gene3D G3DSA:1.10.443.10 103 260 2.7E-33 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19845 d03418e40f60cec7e583bf94d35e3f91 267 Pfam PF00589 Phage integrase family 104 256 4.4E-25 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19845 d03418e40f60cec7e583bf94d35e3f91 267 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 10 80 4.4E-11 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS24285 de483250e4a989429c8907b89999c05b 342 Gene3D G3DSA:3.30.750.24 26 125 1.1E-20 T 06-07-2017 IPR002645 STAS domain APT55_RS24285 de483250e4a989429c8907b89999c05b 342 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 72 341 7.2E-89 T 06-07-2017 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase APT55_RS24285 de483250e4a989429c8907b89999c05b 342 SUPERFAMILY SSF52091 24 124 4.71E-18 T 06-07-2017 IPR002645 STAS domain APT55_RS24285 de483250e4a989429c8907b89999c05b 342 Pfam PF01740 STAS domain 26 122 6.4E-12 T 06-07-2017 IPR002645 STAS domain APT55_RS24285 de483250e4a989429c8907b89999c05b 342 Pfam PF02397 Bacterial sugar transferase 150 336 3.6E-57 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 PRINTS PR01438 Universal stress protein signature 110 132 3.4E-14 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 PRINTS PR01438 Universal stress protein signature 92 104 3.4E-14 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 PRINTS PR01438 Universal stress protein signature 2 20 3.4E-14 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 Pfam PF00582 Universal stress protein family 1 132 1.5E-27 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 Gene3D G3DSA:3.40.50.620 1 132 4.7E-32 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS10120 b98409cd3f7c665381426bff7635fb1b 132 SUPERFAMILY SSF52402 2 132 2.18E-31 T 06-07-2017 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 Pfam PF04055 Radical SAM superfamily 127 286 2.1E-12 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 TIGRFAM TIGR04043 rSAM_MSMEG_0568: radical SAM protein, MSMEG_0568 family 8 357 2.8E-179 T 06-07-2017 IPR016779 Radical SAM enzyme, MSMEG0568 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 SUPERFAMILY SSF102114 127 330 1.18E-30 T 06-07-2017 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 PIRSF PIRSF020870 1 358 7.4E-176 T 06-07-2017 IPR016779 Radical SAM enzyme, MSMEG0568 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 Gene3D G3DSA:3.20.20.70 127 323 3.1E-25 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS15260 83a2e7fb04b6ee13385e4f3ec4e32c03 358 SMART SM00729 111 325 1.8E-5 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS18770 6e168742466b8c97d0fd699414f340d8 319 SMART SM00382 26 216 5.8E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18770 6e168742466b8c97d0fd699414f340d8 319 SUPERFAMILY SSF52540 1 222 1.91E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18770 6e168742466b8c97d0fd699414f340d8 319 Gene3D G3DSA:3.40.50.300 1 225 7.3E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18770 6e168742466b8c97d0fd699414f340d8 319 Pfam PF00005 ABC transporter 18 160 3.4E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 SUPERFAMILY SSF46626 5 114 8.58E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 Gene3D G3DSA:1.10.760.10 30 114 6.2E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 30 106 6.0E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 PRINTS PR00605 Class IC cytochrome C signature 84 106 4.3E-14 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 PRINTS PR00605 Class IC cytochrome C signature 41 52 4.3E-14 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS08340 b5733bdac47d525c7a1b60881d45ec91 114 Hamap MF_00594 Cytochrome c6 [petJ]. 30 114 30.633 T 06-07-2017 IPR023655 Cytochrome c6 GO:0005506|GO:0009055 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Gene3D G3DSA:1.25.60.10 12 138 1.4E-24 T 06-07-2017 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Gene3D G3DSA:1.10.357.20 286 458 3.0E-54 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SMART SM00116 150 203 8.4 T 06-07-2017 IPR000644 CBS domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SMART SM00116 214 262 3.2E-11 T 06-07-2017 IPR000644 CBS domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Pfam PF01769 Divalent cation transporter 329 450 5.6E-29 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SUPERFAMILY SSF161093 286 457 4.18E-49 T 06-07-2017 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Pfam PF03448 MgtE intracellular N domain 41 140 9.8E-23 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 TIGRFAM TIGR00400 mgtE: magnesium transporter 8 458 1.6E-180 T 06-07-2017 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Gene3D G3DSA:3.10.580.10 139 268 3.3E-27 T 06-07-2017 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Pfam PF00571 CBS domain 144 203 1.5E-8 T 06-07-2017 IPR000644 CBS domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 Pfam PF00571 CBS domain 207 262 7.6E-11 T 06-07-2017 IPR000644 CBS domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SUPERFAMILY SSF158791 16 139 5.62E-27 T 06-07-2017 APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SMART SM00924 40 143 1.6E-31 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain APT55_RS14240 ea2b67cf0beae689c34d037a95e48efe 459 SUPERFAMILY SSF54631 142 282 1.17E-35 T 06-07-2017 APT55_RS22860 69ef12118bba0f4e1d6d79108123dd22 108 Pfam PF03091 CutA1 divalent ion tolerance protein 8 104 1.2E-37 T 06-07-2017 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 APT55_RS22860 69ef12118bba0f4e1d6d79108123dd22 108 Gene3D G3DSA:3.30.70.830 2 106 2.4E-40 T 06-07-2017 APT55_RS22860 69ef12118bba0f4e1d6d79108123dd22 108 SUPERFAMILY SSF54913 3 106 1.59E-36 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT55_RS10225 f787a07fb51a363443731fe82fdcd9e5 189 Gene3D G3DSA:3.30.1460.10 46 110 7.4E-6 T 06-07-2017 APT55_RS10225 f787a07fb51a363443731fe82fdcd9e5 189 SUPERFAMILY SSF69635 22 119 1.15E-14 T 06-07-2017 APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 4 176 1.5E-55 T 06-07-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 PIRSF PIRSF004553 3 177 1.9E-48 T 06-07-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 SUPERFAMILY SSF53335 6 176 3.7E-44 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 114 120 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 Pfam PF03602 Conserved hypothetical protein 95 6 176 8.2E-51 T 06-07-2017 APT55_RS17745 51daa07cbe7c85136cdebcc92a959048 177 Gene3D G3DSA:3.40.50.150 5 176 2.9E-61 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14805 0b8dfd2a52b37c6aefa24a376f9674e2 196 Pfam PF05685 Putative restriction endonuclease 21 189 9.2E-32 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS14805 0b8dfd2a52b37c6aefa24a376f9674e2 196 Gene3D G3DSA:3.90.1570.10 10 193 5.1E-25 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS14805 0b8dfd2a52b37c6aefa24a376f9674e2 196 SUPERFAMILY SSF52980 8 193 2.36E-27 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS11175 5953a2524e935220704a7ed0d466ff2c 197 Gene3D G3DSA:1.10.101.10 88 147 2.6E-7 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS11175 5953a2524e935220704a7ed0d466ff2c 197 Pfam PF01471 Putative peptidoglycan binding domain 91 140 2.6E-7 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS11175 5953a2524e935220704a7ed0d466ff2c 197 SUPERFAMILY SSF47090 89 144 6.44E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 Gene3D G3DSA:1.10.101.10 207 274 2.7E-20 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 Pfam PF01471 Putative peptidoglycan binding domain 214 269 2.1E-14 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 SMART SM00641 3 109 2.8E-16 T 06-07-2017 IPR018077 Glycoside hydrolase, family 25 subgroup APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 Gene3D G3DSA:3.20.20.80 2 204 1.1E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 SUPERFAMILY SSF47090 204 270 9.42E-18 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 SUPERFAMILY SSF51445 2 204 3.47E-56 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS08895 76cf4701f65f3575c013eb81a70342b7 324 Pfam PF01183 Glycosyl hydrolases family 25 6 182 1.1E-46 T 06-07-2017 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 APT55_RS30920 4c2921ca3fb1d34505296577eb70de93 324 SUPERFAMILY SSF50022 3 125 7.33E-35 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS30920 4c2921ca3fb1d34505296577eb70de93 324 Gene3D G3DSA:2.102.10.10 8 126 1.2E-33 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS30920 4c2921ca3fb1d34505296577eb70de93 324 SUPERFAMILY SSF55961 122 318 4.95E-30 T 06-07-2017 APT55_RS30920 4c2921ca3fb1d34505296577eb70de93 324 Pfam PF00355 Rieske [2Fe-2S] domain 10 91 1.0E-20 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 360 471 5.6E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SMART SM00091 361 427 1.1E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.30.565.10 540 709 6.3E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.40.50.2300 859 911 2.7E-8 T 06-07-2017 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SUPERFAMILY SSF52172 858 909 1.71E-8 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Pfam PF00512 His Kinase A (phospho-acceptor) domain 472 554 1.2E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SMART SM00387 600 711 4.7E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Pfam PF00072 Response regulator receiver domain 741 849 2.6E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.30.450.20 184 307 3.3E-20 T 06-07-2017 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SMART SM00448 739 849 9.2E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 600 709 4.9E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:1.10.287.130 465 539 1.1E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SUPERFAMILY SSF55785 348 464 1.33E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SMART SM00388 472 554 2.6E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SUPERFAMILY SSF47384 457 555 1.08E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.40.50.2300 735 857 5.6E-35 T 06-07-2017 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SUPERFAMILY SSF52172 738 855 2.28E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 664 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 PRINTS PR00344 Bacterial sensor protein C-terminal signature 671 689 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 708 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 650 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.30.450.20 78 160 1.5E-15 T 06-07-2017 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Gene3D G3DSA:3.30.450.20 356 464 1.8E-11 T 06-07-2017 APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 SUPERFAMILY SSF55874 543 709 9.43E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Pfam PF13426 PAS domain 372 465 1.8E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS22400 46e18c8fd97602f80b113c5de987c70d 951 Pfam PF02743 Cache domain 37 293 9.3E-21 T 06-07-2017 IPR033479 Double Cache domain 1 APT55_RS07785 56aaa9c6907399ef43256782ab5bd5dc 673 SMART SM00955 264 555 1.3E-106 T 06-07-2017 APT55_RS07785 56aaa9c6907399ef43256782ab5bd5dc 673 Gene3D G3DSA:1.10.10.10 171 242 7.8E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07785 56aaa9c6907399ef43256782ab5bd5dc 673 SUPERFAMILY SSF50249 216 598 4.28E-112 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS07785 56aaa9c6907399ef43256782ab5bd5dc 673 Pfam PF00773 RNB domain 264 554 5.4E-77 T 06-07-2017 APT55_RS23385 d48d7d27a5e3ea800f7b211951016dc7 122 Gene3D G3DSA:3.10.20.30 15 105 6.9E-32 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS23385 d48d7d27a5e3ea800f7b211951016dc7 122 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 18 85 1.7E-12 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS23385 d48d7d27a5e3ea800f7b211951016dc7 122 TIGRFAM TIGR02008 fdx_plant: ferredoxin [2Fe-2S] 7 100 3.8E-25 T 06-07-2017 IPR010241 Ferredoxin [2Fe-2S], plant GO:0009055|GO:0022900|GO:0051537 APT55_RS23385 d48d7d27a5e3ea800f7b211951016dc7 122 SUPERFAMILY SSF54292 6 105 7.34E-29 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS23385 d48d7d27a5e3ea800f7b211951016dc7 122 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 43 51 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 Gene3D G3DSA:3.30.200.20 7 84 8.8E-15 T 06-07-2017 APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 142 154 - T 06-07-2017 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 Pfam PF00069 Protein kinase domain 17 279 2.8E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 21 45 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 SUPERFAMILY SSF56112 11 296 5.26E-55 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS12540 832a098656f54a32d96c2c86222d6b61 619 Gene3D G3DSA:1.10.510.10 85 284 1.6E-34 T 06-07-2017 APT55_RS12935 54a22831175a523ff2f163ed97933909 245 Pfam PF00005 ABC transporter 28 171 2.3E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS12935 54a22831175a523ff2f163ed97933909 245 SUPERFAMILY SSF52540 3 227 4.82E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12935 54a22831175a523ff2f163ed97933909 245 SMART SM00382 37 225 8.4E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12935 54a22831175a523ff2f163ed97933909 245 Gene3D G3DSA:3.40.50.300 3 225 1.1E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24010 dc86b8ddcda24b565da53c848e4e455f 329 Pfam PF06144 DNA polymerase III, delta subunit 4 177 1.2E-38 T 06-07-2017 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 APT55_RS24010 dc86b8ddcda24b565da53c848e4e455f 329 SUPERFAMILY SSF52540 2 196 7.97E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24010 dc86b8ddcda24b565da53c848e4e455f 329 SUPERFAMILY SSF48019 201 323 2.55E-19 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT55_RS24010 dc86b8ddcda24b565da53c848e4e455f 329 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 3 321 3.9E-55 T 06-07-2017 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 APT55_RS24010 dc86b8ddcda24b565da53c848e4e455f 329 Gene3D G3DSA:1.10.8.60 139 219 4.3E-7 T 06-07-2017 APT55_RS17540 0bee1f7543c336a81959583770860c61 287 Gene3D G3DSA:2.120.10.30 104 247 3.0E-24 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS17540 0bee1f7543c336a81959583770860c61 287 Gene3D G3DSA:2.120.10.30 5 103 4.0E-16 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS17540 0bee1f7543c336a81959583770860c61 287 SUPERFAMILY SSF101898 18 246 1.83E-31 T 06-07-2017 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 Pfam PF13371 Tetratricopeptide repeat 122 175 6.4E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 Gene3D G3DSA:1.25.40.10 40 135 5.1E-32 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SUPERFAMILY SSF48452 41 210 3.42E-43 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 Pfam PF13414 TPR repeat 80 121 3.6E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 Pfam PF13432 Tetratricopeptide repeat 182 235 4.0E-5 T 06-07-2017 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SMART SM00028 175 208 65.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SMART SM00028 39 72 10.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SMART SM00028 107 140 1.9E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SMART SM00028 73 106 4.2E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 SMART SM00028 141 174 0.0035 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11815 3c7c60208749b31fab7842551d3b31a2 270 Gene3D G3DSA:1.25.40.10 136 238 4.9E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS16280 1633b19fba07a2e0a54a81678ee343a7 289 Gene3D G3DSA:3.20.20.410 5 277 5.3E-70 T 06-07-2017 IPR002763 Protein of unknown function DUF72 APT55_RS16280 1633b19fba07a2e0a54a81678ee343a7 289 Pfam PF01904 Protein of unknown function DUF72 29 262 5.9E-61 T 06-07-2017 IPR002763 Protein of unknown function DUF72 APT55_RS16280 1633b19fba07a2e0a54a81678ee343a7 289 SUPERFAMILY SSF117396 11 265 9.16E-69 T 06-07-2017 IPR002763 Protein of unknown function DUF72 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 303 746 7.5E-169 T 06-07-2017 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Pfam PF02811 PHP domain 6 178 1.7E-45 T 06-07-2017 IPR004013 PHP domain GO:0003824 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Gene3D G3DSA:1.10.150.280 846 884 8.3E-6 T 06-07-2017 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Pfam PF14579 Helix-hairpin-helix motif 820 909 1.1E-28 T 06-07-2017 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 SUPERFAMILY SSF89550 4 250 1.41E-33 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 1045 0.0 T 06-07-2017 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Gene3D G3DSA:3.20.20.140 2 257 2.0E-45 T 06-07-2017 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Gene3D G3DSA:2.40.50.140 998 1088 3.8E-5 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 Pfam PF01336 OB-fold nucleic acid binding domain 1017 1086 3.8E-7 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT55_RS19175 b555ce9c1d445c8f01fe6982a949b6ee 1171 SMART SM00481 4 71 1.1E-28 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SUPERFAMILY SSF50978 801 1058 1.1E-93 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1115 1129 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 740 754 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 841 879 1.4E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 715 753 1.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 1008 1046 3.5E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 589 626 1.3E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 883 921 3.4E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 759 795 5.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 799 836 6.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 631 669 1.7E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 1051 1086 7.2E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 674 711 8.6E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 1094 1128 9.8E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 967 1004 6.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 558 584 0.18 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00400 WD domain, G-beta repeat 926 963 9.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00320 G protein beta WD-40 repeat signature 740 754 1.6E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00320 G protein beta WD-40 repeat signature 698 712 1.6E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00320 G protein beta WD-40 repeat signature 1033 1047 1.6E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Gene3D G3DSA:2.130.10.10 753 985 4.8E-96 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Gene3D G3DSA:2.130.10.10 986 1139 2.8E-59 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 782 796 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Pfam PF00931 NB-ARC domain 119 217 2.9E-9 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SUPERFAMILY SSF141571 516 554 1.31E-5 T 06-07-2017 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Gene3D G3DSA:2.130.10.10 553 752 1.5E-78 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 840 879 1.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 588 627 1.2E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 924 963 8.9E-15 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 630 669 4.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 882 921 1.2E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 714 753 5.3E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 1049 1087 1.1E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 966 1004 9.6E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 1089 1128 9.1E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 546 585 0.024 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 1007 1046 5.9E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 672 711 3.8E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 756 795 3.4E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SMART SM00320 798 837 7.8E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 656 670 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00364 Disease resistance protein signature 131 146 1.5E-9 T 06-07-2017 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00364 Disease resistance protein signature 308 322 1.5E-9 T 06-07-2017 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 PRINTS PR00364 Disease resistance protein signature 204 218 1.5E-9 T 06-07-2017 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SUPERFAMILY SSF52540 96 365 7.16E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1033 1047 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 Gene3D G3DSA:3.40.50.300 113 223 4.5E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SUPERFAMILY SSF50978 552 836 4.12E-102 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 SUPERFAMILY SSF50969 1012 1146 7.06E-35 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 866 880 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04910 92c644a0525a59a60195aab92629c227 1170 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 698 712 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 PIRSF PIRSF000401 38 296 3.7E-76 T 06-07-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 1 295 32.384 T 06-07-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 4 295 1.2E-83 T 06-07-2017 APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 5 289 6.2E-82 T 06-07-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 SUPERFAMILY SSF53335 73 291 3.08E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS01045 b0e0d6bf32c1e2ab88654ca7850ef9a6 296 Gene3D G3DSA:3.40.50.150 91 291 5.2E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12700 3412dd59df0f56831168e6cf824c40d8 405 SUPERFAMILY SSF53383 23 403 3.67E-90 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS12700 3412dd59df0f56831168e6cf824c40d8 405 PIRSF PIRSF000390 14 405 1.7E-89 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS12700 3412dd59df0f56831168e6cf824c40d8 405 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 24 400 3.4E-91 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS12700 3412dd59df0f56831168e6cf824c40d8 405 Gene3D G3DSA:3.40.640.10 21 257 4.6E-72 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS12700 3412dd59df0f56831168e6cf824c40d8 405 Gene3D G3DSA:3.90.1150.10 263 404 1.7E-13 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 119 152 0.74 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 85 118 3.7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 224 257 5.5E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 153 185 0.028 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 258 291 0.59 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 190 223 8.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SMART SM00028 51 84 9.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Pfam PF00515 Tetratricopeptide repeat 225 257 3.4E-9 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Gene3D G3DSA:1.25.40.10 151 228 2.4E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Gene3D G3DSA:1.25.40.10 229 293 9.5E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Pfam PF13432 Tetratricopeptide repeat 157 221 0.0027 T 06-07-2017 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Pfam PF13432 Tetratricopeptide repeat 58 117 5.3E-4 T 06-07-2017 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 SUPERFAMILY SSF48452 54 295 3.38E-32 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Gene3D G3DSA:1.25.40.10 56 148 6.9E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13500 becfda888fc4a83f11f5e29201321b85 316 Pfam PF13174 Tetratricopeptide repeat 120 140 0.1 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 Gene3D G3DSA:3.40.190.10 89 178 2.1E-14 T 06-07-2017 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 SUPERFAMILY SSF53850 90 309 4.95E-35 T 06-07-2017 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 Gene3D G3DSA:1.10.10.10 1 86 9.9E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.4E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 Pfam PF03466 LysR substrate binding domain 88 268 2.9E-36 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 Gene3D G3DSA:3.40.190.10 179 268 1.9E-17 T 06-07-2017 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 SUPERFAMILY SSF46785 1 86 3.02E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS03055 e321e030b626cfe9555d10ccc1565638 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 SUPERFAMILY SSF51735 4 216 1.68E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 66 77 1.4E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.4E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.4E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 Pfam PF00106 short chain dehydrogenase 8 182 2.3E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08155 7044d66598f03fbdd03b7768ee497929 229 Gene3D G3DSA:3.40.50.720 4 209 5.9E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 PRINTS PR00762 Chloride channel signature 369 385 2.3E-31 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 PRINTS PR00762 Chloride channel signature 79 96 2.3E-31 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 PRINTS PR00762 Chloride channel signature 326 346 2.3E-31 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 PRINTS PR00762 Chloride channel signature 387 406 2.3E-31 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 PRINTS PR00762 Chloride channel signature 159 178 2.3E-31 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Pfam PF00582 Universal stress protein family 808 857 6.2E-7 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Pfam PF00582 Universal stress protein family 594 725 5.4E-21 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Pfam PF00654 Voltage gated chloride channel 65 419 5.6E-87 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SUPERFAMILY SSF52402 594 725 1.49E-21 T 06-07-2017 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SUPERFAMILY SSF52402 733 857 2.14E-11 T 06-07-2017 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Pfam PF00571 CBS domain 513 565 2.1E-15 T 06-07-2017 IPR000644 CBS domain APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Pfam PF00571 CBS domain 453 504 2.2E-10 T 06-07-2017 IPR000644 CBS domain APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SMART SM00116 519 566 2.5E-15 T 06-07-2017 IPR000644 CBS domain APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SMART SM00116 460 507 2.3E-7 T 06-07-2017 IPR000644 CBS domain APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Gene3D G3DSA:3.40.50.620 720 857 8.3E-12 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SUPERFAMILY SSF81340 2 438 2.62E-100 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Gene3D G3DSA:1.10.3080.10 11 439 4.4E-94 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 SUPERFAMILY SSF54631 448 565 3.54E-34 T 06-07-2017 APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Gene3D G3DSA:3.40.50.620 590 719 1.5E-20 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS06885 b37324c8796f312279f381fcf4ea067c 861 Gene3D G3DSA:3.20.20.70 450 589 3.2E-34 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 Gene3D G3DSA:3.90.1150.10 246 375 2.8E-38 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 Pfam PF00266 Aminotransferase class-V 3 366 2.0E-73 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 191 210 - T 06-07-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 PIRSF PIRSF005572 1 383 3.0E-118 T 06-07-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 Gene3D G3DSA:3.40.640.10 15 245 5.9E-81 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS11955 eed618e3462e15c6367e7fae822d696c 389 SUPERFAMILY SSF53383 3 378 1.31E-96 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS12450 cb884e57b2dad83d3f4edb47c85d6b97 189 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 71 1.9E-6 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SMART SM00388 206 274 1.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SMART SM00065 37 188 5.8E-14 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Pfam PF01590 GAF domain 41 172 6.7E-14 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Gene3D G3DSA:3.30.450.40 40 183 1.2E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Gene3D G3DSA:3.30.565.10 414 466 1.4E-12 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Gene3D G3DSA:3.30.565.10 282 376 1.4E-12 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SUPERFAMILY SSF55874 278 397 1.33E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SUPERFAMILY SSF55874 431 466 1.33E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SUPERFAMILY SSF47384 203 273 2.75E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Gene3D G3DSA:1.10.287.130 209 269 1.6E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 SUPERFAMILY SSF55781 41 185 8.07E-27 T 06-07-2017 IPR029016 GAF domain-like APT55_RS23495 e35c428619a48134338654a2c18bc7d5 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 272 2.8E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10940 49962235285918280608756f13b69592 411 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 3 397 6.2E-143 T 06-07-2017 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like APT55_RS10940 49962235285918280608756f13b69592 411 SUPERFAMILY SSF160996 181 346 4.45E-45 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 2.6E-9 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 157 166 2.6E-9 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 SUPERFAMILY SSF51905 343 402 7.65E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10940 49962235285918280608756f13b69592 411 SUPERFAMILY SSF51905 2 181 7.65E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10940 49962235285918280608756f13b69592 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 353 375 9.8E-10 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 9.8E-10 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 9.8E-10 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 Gene3D G3DSA:3.50.50.60 2 180 6.6E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10940 49962235285918280608756f13b69592 411 Gene3D G3DSA:3.50.50.60 345 402 6.6E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10940 49962235285918280608756f13b69592 411 Gene3D G3DSA:2.40.30.10 181 272 1.9E-24 T 06-07-2017 APT55_RS10940 49962235285918280608756f13b69592 411 Gene3D G3DSA:1.10.8.260 273 327 9.5E-4 T 06-07-2017 IPR023166 HI0933 insert-like domain APT55_RS10940 49962235285918280608756f13b69592 411 Pfam PF03486 HI0933-like protein 2 398 1.0E-135 T 06-07-2017 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 Pfam PF13646 HEAT repeats 69 154 2.1E-15 T 06-07-2017 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SUPERFAMILY SSF48371 6 217 3.04E-42 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 174 202 0.14 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 17 46 12.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 80 109 32.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 112 141 3.4E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 143 172 1.5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 SMART SM00567 E-Z type HEAT repeats 48 77 0.041 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS13050 7aa569182e1674ed080b028161c4acba 223 Gene3D G3DSA:1.25.10.10 5 221 2.0E-38 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF50341 608 748 1.44E-20 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:1.20.120.160 6 142 3.0E-25 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SMART SM00260 601 748 2.0E-10 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 280 336 2.1E-5 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SMART SM00387 467 609 1.5E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Pfam PF00072 Response regulator receiver domain 778 890 1.1E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF47384 280 335 9.02E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF52172 777 895 4.98E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SMART SM00073 6 103 3.1E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF55874 425 606 3.14E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 606 1.1E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 563 1.1E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 587 1.1E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 1.1E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SMART SM01231 279 394 9.4E-5 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:3.40.50.2300 776 895 1.2E-31 T 06-07-2017 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:1.10.287.560 280 336 2.7E-7 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:2.30.30.40 608 630 8.2E-11 T 06-07-2017 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:2.30.30.40 703 747 8.2E-11 T 06-07-2017 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SMART SM00448 776 890 1.2E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Pfam PF01584 CheW-like domain 614 750 1.8E-13 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Gene3D G3DSA:3.30.565.10 426 607 1.8E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 608 1.3E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 Pfam PF01627 Hpt domain 8 79 1.5E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF47226 8 127 2.09E-21 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS25325 f568fdc05451de0ab087bd7842d6c49d 896 SUPERFAMILY SSF47226 156 224 2.86E-5 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS30050 2d1989575786fc2a7fb0a26ca1804e98 275 Pfam PF00899 ThiF family 24 142 2.7E-8 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS30050 2d1989575786fc2a7fb0a26ca1804e98 275 Gene3D G3DSA:3.40.50.720 25 166 1.0E-9 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS30050 2d1989575786fc2a7fb0a26ca1804e98 275 Gene3D G3DSA:3.40.50.720 205 261 1.0E-9 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS30050 2d1989575786fc2a7fb0a26ca1804e98 275 SUPERFAMILY SSF69572 25 245 4.32E-10 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 429 452 1.8E-8 T 06-07-2017 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 58 84 1.8E-8 T 06-07-2017 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 383 401 1.8E-8 T 06-07-2017 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 89 111 1.8E-8 T 06-07-2017 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 SMART SM00490 347 426 1.3E-12 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 Pfam PF16203 ERCC3/RAD25/XPB C-terminal helicase 323 453 8.0E-17 T 06-07-2017 IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 SMART SM00487 75 255 7.4E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 Gene3D G3DSA:3.40.50.300 77 234 9.0E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 Gene3D G3DSA:3.40.50.300 310 454 6.9E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 Pfam PF04851 Type III restriction enzyme, res subunit 76 217 4.6E-18 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 SUPERFAMILY SSF52540 323 440 1.14E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12905 f1d2cf9f625f851776ba6fa2307a94f9 492 SUPERFAMILY SSF52540 120 238 1.14E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 235 255 4.0E-8 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 Gene3D G3DSA:3.40.50.300 5 252 1.2E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 Pfam PF00005 ABC transporter 27 184 7.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 SMART SM00382 33 232 1.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS19205 059a0edbe08d6186c0ec97049e7cf531 256 SUPERFAMILY SSF52540 7 254 4.52E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15410 5731d02ef92e9a6cf2e90cadd22c5ba0 353 Gene3D G3DSA:3.40.50.300 136 272 1.6E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15410 5731d02ef92e9a6cf2e90cadd22c5ba0 353 SUPERFAMILY SSF53795 137 206 3.36E-14 T 06-07-2017 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 402 3.8E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 Pfam PF01590 GAF domain 9 126 3.4E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 Gene3D G3DSA:3.30.565.10 237 403 6.6E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 SMART SM00388 149 214 6.4E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 SUPERFAMILY SSF55781 10 142 2.12E-5 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 SUPERFAMILY SSF47384 133 206 7.65E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 SUPERFAMILY SSF55874 238 378 2.23E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 332 1.1E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 370 1.1E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 Gene3D G3DSA:1.10.287.130 143 206 4.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19050 3ac88f15c10fc1c1b30a673ef8c1ac54 409 SMART SM00387 281 405 4.4E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 Gene3D G3DSA:3.40.50.1370 150 305 6.6E-51 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 SUPERFAMILY SSF53671 4 330 2.23E-89 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 Gene3D G3DSA:3.40.50.1370 5 149 3.9E-47 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 45 67 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 310 324 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 290 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 143 160 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 83 92 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 244 253 1.5E-31 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 170 328 1.1E-27 T 06-07-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 8 331 40.701 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 9 329 9.3E-106 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 9 155 6.9E-38 T 06-07-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 55 74 1.7E-15 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 281 290 1.7E-15 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 144 155 1.7E-15 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 293 316 1.7E-15 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS18230 d8d5da7416767bd07aa4483f728364c2 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 55 62 - T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 Pfam PF13180 PDZ domain 289 386 1.8E-16 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 Pfam PF13365 Trypsin-like peptidase domain 116 253 3.4E-37 T 06-07-2017 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 SUPERFAMILY SSF50494 63 281 5.45E-67 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 Gene3D G3DSA:2.40.10.10 62 177 2.6E-37 T 06-07-2017 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 Gene3D G3DSA:2.30.42.10 292 395 3.5E-28 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 SUPERFAMILY SSF50156 258 389 6.31E-25 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 246 263 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 186 210 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 125 137 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 337 349 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 PRINTS PR00834 HtrA/DegQ protease family signature 146 166 5.0E-49 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 SMART SM00228 310 379 7.2E-16 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS21490 c7956cb91e3997ef0975a53d69924b21 398 Gene3D G3DSA:2.40.10.10 178 291 4.8E-45 T 06-07-2017 APT55_RS29675 8950d34eb27d485b21b894904e78bee7 175 SUPERFAMILY SSF52980 2 146 5.36E-14 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS29675 8950d34eb27d485b21b894904e78bee7 175 Gene3D G3DSA:3.90.1570.10 6 152 5.5E-13 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS29675 8950d34eb27d485b21b894904e78bee7 175 Pfam PF05685 Putative restriction endonuclease 11 156 1.4E-24 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Pfam PF00072 Response regulator receiver domain 8 119 1.3E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 172 195 1.6E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SUPERFAMILY SSF52172 6 164 2.28E-44 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 317 425 2.1E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SMART SM00388 172 269 0.0024 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SMART SM00387 314 428 1.5E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Gene3D G3DSA:3.30.565.10 267 430 1.8E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06920 497ad440061dd8dd03383884702c0541 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 425 5.2E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 5.2E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 5.2E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 5.2E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SUPERFAMILY SSF47384 237 267 1.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SUPERFAMILY SSF47384 166 207 1.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Gene3D G3DSA:3.40.50.2300 3 135 3.2E-43 T 06-07-2017 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SUPERFAMILY SSF55874 255 430 2.49E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Gene3D G3DSA:1.10.287.130 236 265 1.8E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 Gene3D G3DSA:1.10.287.130 167 198 1.8E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06920 497ad440061dd8dd03383884702c0541 446 SMART SM00448 6 119 1.2E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05470 f9338326d3101ba47066c759bd7e02c7 331 SUPERFAMILY SSF52540 46 189 1.53E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05470 f9338326d3101ba47066c759bd7e02c7 331 SUPERFAMILY SSF52540 217 281 1.53E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05470 f9338326d3101ba47066c759bd7e02c7 331 SMART SM00382 67 254 1.7E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS05470 f9338326d3101ba47066c759bd7e02c7 331 Gene3D G3DSA:3.40.50.300 49 267 2.4E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05470 f9338326d3101ba47066c759bd7e02c7 331 Pfam PF07728 AAA domain (dynein-related subfamily) 71 231 4.1E-8 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 Gene3D G3DSA:1.10.3810.10 84 255 3.2E-70 T 06-07-2017 APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 SUPERFAMILY SSF53955 66 275 2.53E-73 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 SUPERFAMILY SSF56601 235 257 2.44E-123 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 SUPERFAMILY SSF56601 286 630 2.44E-123 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 Pfam PF00912 Transglycosylase 78 253 1.1E-62 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 Pfam PF00905 Penicillin binding protein transpeptidase domain 345 614 2.4E-36 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 Gene3D G3DSA:3.40.710.10 256 631 1.6E-126 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS04065 ebad5c1560635fc3061f262141c64be7 635 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 89 619 1.7E-190 T 06-07-2017 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00412 Epoxide hydrolase signature 110 123 6.8E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00412 Epoxide hydrolase signature 52 67 6.8E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00412 Epoxide hydrolase signature 32 50 6.8E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00412 Epoxide hydrolase signature 247 269 6.8E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 Pfam PF00561 alpha/beta hydrolase fold 26 122 1.5E-12 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 Gene3D G3DSA:3.40.50.1820 3 271 7.2E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 SUPERFAMILY SSF53474 6 272 1.37E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 3.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 3.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS19990 db20c453dc861d74d5255eb2de40187e 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 3.9E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS27485 3e90c5580ee89c5d38b6d2bf552fb47c 171 SMART SM00240 82 138 1.2E-4 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27485 3e90c5580ee89c5d38b6d2bf552fb47c 171 Pfam PF00498 FHA domain 93 161 4.4E-12 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27485 3e90c5580ee89c5d38b6d2bf552fb47c 171 Gene3D G3DSA:2.60.200.20 57 168 3.1E-16 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27485 3e90c5580ee89c5d38b6d2bf552fb47c 171 SUPERFAMILY SSF49879 38 169 1.05E-17 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS23085 760c80c913e6430cead497773f95af7a 400 Pfam PF01384 Phosphate transporter family 21 386 1.2E-104 T 06-07-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.40.50.300 403 488 1.4E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.40.50.300 709 808 1.1E-89 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.40.50.300 515 619 1.1E-89 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Hamap MF_01382 Protein translocase subunit SecA [secA]. 1 1022 19.822 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Pfam PF07517 SecA DEAD-like domain 3 385 1.6E-132 T 06-07-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:1.10.3060.10 837 1020 4.5E-57 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF52540 352 399 3.13E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF52540 2 231 3.13E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 ProSitePatterns PS01312 SecA family signature. 585 600 - T 06-07-2017 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF81886 809 1029 2.62E-72 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Pfam PF01043 SecA preprotein cross-linking domain 236 342 6.0E-36 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SMART SM00958 231 342 1.6E-64 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.90.1440.10 234 352 1.0E-46 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF52540 707 807 4.26E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF52540 515 608 4.26E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.40.50.300 2 231 2.2E-125 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Gene3D G3DSA:3.40.50.300 353 400 2.2E-125 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 24 489 1.6E-216 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 Pfam PF07516 SecA Wing and Scaffold domain 806 1019 7.0E-64 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SMART SM00957 2 386 4.4E-283 T 06-07-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 323 345 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 360 377 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 397 410 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 120 130 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 66 90 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 104 118 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 PRINTS PR00906 SecA protein signature 173 193 1.6E-71 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT55_RS05180 7a02e8693b63801623fa111eebc57c7a 1033 SUPERFAMILY SSF81767 230 352 3.27E-45 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 APT55_RS27245 57d2663f51a68fb57c4b908478a9526b 117 Pfam PF08869 XisI protein 3 111 5.5E-43 T 06-07-2017 IPR014968 XisI protein APT55_RS27245 57d2663f51a68fb57c4b908478a9526b 117 SUPERFAMILY SSF143847 3 112 2.09E-41 T 06-07-2017 IPR014968 XisI protein APT55_RS27245 57d2663f51a68fb57c4b908478a9526b 117 Gene3D G3DSA:3.30.310.110 3 112 6.2E-45 T 06-07-2017 IPR014968 XisI protein APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 Pfam PF01479 S4 domain 91 138 3.3E-20 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 201 1.5E-82 T 06-07-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 201 34.752 T 06-07-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 Gene3D G3DSA:1.10.1050.10 1 97 6.6E-46 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 SUPERFAMILY SSF55174 3 201 5.1E-73 T 06-07-2017 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 SMART SM01390 3 90 8.2E-40 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 ProSitePatterns PS00632 Ribosomal protein S4 signature. 89 113 - T 06-07-2017 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 Gene3D G3DSA:3.10.290.10 98 186 1.2E-36 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 2.8E-26 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APT55_RS17190 d9313ac866dce7713f26a963dbb76120 203 SMART SM00363 91 155 4.2E-20 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Gene3D G3DSA:1.10.1160.10 244 327 5.7E-31 T 06-07-2017 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 466 2.7E-171 T 06-07-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Gene3D G3DSA:3.40.50.620 192 241 1.1E-51 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Gene3D G3DSA:3.40.50.620 2 67 1.1E-51 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 SUPERFAMILY SSF52374 3 310 5.9E-108 T 06-07-2017 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Gene3D G3DSA:1.10.10.350 382 464 2.3E-12 T 06-07-2017 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 7.9E-27 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 PRINTS PR00987 Glutamyl-tRNA synthetase signature 190 200 7.9E-27 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 7.9E-27 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 PRINTS PR00987 Glutamyl-tRNA synthetase signature 206 214 7.9E-27 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 7.9E-27 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 475 32.154 T 06-07-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 SUPERFAMILY SSF48163 312 474 3.4E-34 T 06-07-2017 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 318 6.9E-99 T 06-07-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 APT55_RS23990 35e207fdca864cc23a6645b46c24115e 481 Gene3D G3DSA:3.90.800.10 68 181 6.1E-38 T 06-07-2017 APT55_RS04765 156e4710805940bdf11f2c408016c963 307 Pfam PF13410 Glutathione S-transferase, C-terminal domain 194 258 3.7E-12 T 06-07-2017 APT55_RS04765 156e4710805940bdf11f2c408016c963 307 Gene3D G3DSA:3.40.30.10 48 167 4.8E-17 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04765 156e4710805940bdf11f2c408016c963 307 Pfam PF13409 Glutathione S-transferase, N-terminal domain 61 148 4.9E-21 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS04765 156e4710805940bdf11f2c408016c963 307 Gene3D G3DSA:1.20.1050.10 168 279 3.2E-25 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS04765 156e4710805940bdf11f2c408016c963 307 SUPERFAMILY SSF52833 46 152 2.61E-11 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04765 156e4710805940bdf11f2c408016c963 307 SUPERFAMILY SSF47616 155 293 1.29E-33 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS04765 156e4710805940bdf11f2c408016c963 307 PIRSF PIRSF015753 4 306 4.7E-118 T 06-07-2017 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 APT55_RS19000 07ec28f7508aeea9397ae358f8a40ae0 552 Pfam PF12452 Protein of unknown function (DUF3685) 357 547 2.7E-81 T 06-07-2017 IPR022552 Uncharacterised protein family Ycf55 APT55_RS19000 07ec28f7508aeea9397ae358f8a40ae0 552 Gene3D G3DSA:3.40.50.2300 9 129 6.2E-13 T 06-07-2017 APT55_RS19000 07ec28f7508aeea9397ae358f8a40ae0 552 PIRSF PIRSF026434 4 552 1.0E-159 T 06-07-2017 IPR016837 Uncharacterised protein family Ycf55, cyanobacteria APT55_RS19000 07ec28f7508aeea9397ae358f8a40ae0 552 SUPERFAMILY SSF52172 9 133 3.13E-11 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS19000 07ec28f7508aeea9397ae358f8a40ae0 552 Pfam PF00072 Response regulator receiver domain 11 117 1.2E-4 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04600 245048b5461199c150c758672f8f100f 401 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 294 307 - T 06-07-2017 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 APT55_RS04600 245048b5461199c150c758672f8f100f 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.5E-17 T 06-07-2017 APT55_RS04600 245048b5461199c150c758672f8f100f 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.5E-17 T 06-07-2017 APT55_RS04600 245048b5461199c150c758672f8f100f 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 1.5E-17 T 06-07-2017 APT55_RS04600 245048b5461199c150c758672f8f100f 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 1.5E-17 T 06-07-2017 APT55_RS04600 245048b5461199c150c758672f8f100f 401 Gene3D G3DSA:3.50.50.60 6 182 2.8E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04600 245048b5461199c150c758672f8f100f 401 Gene3D G3DSA:3.50.50.60 268 356 2.8E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04600 245048b5461199c150c758672f8f100f 401 SUPERFAMILY SSF51905 267 384 4.77E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04600 245048b5461199c150c758672f8f100f 401 SUPERFAMILY SSF51905 5 177 4.77E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04600 245048b5461199c150c758672f8f100f 401 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 390 4.3E-126 T 06-07-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APT55_RS04600 245048b5461199c150c758672f8f100f 401 Pfam PF01494 FAD binding domain 6 335 6.7E-30 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS08100 f57b031961620a8f9b7690aa4237c137 272 SMART SM00382 54 234 5.1E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08100 f57b031961620a8f9b7690aa4237c137 272 Gene3D G3DSA:3.40.50.300 26 232 1.4E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08100 f57b031961620a8f9b7690aa4237c137 272 SUPERFAMILY SSF52540 26 235 1.5E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08100 f57b031961620a8f9b7690aa4237c137 272 Pfam PF00005 ABC transporter 45 184 2.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08100 f57b031961620a8f9b7690aa4237c137 272 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS00035 1a2669abb33ed45adcfd5b34d3ad620d 422 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 217 226 - T 06-07-2017 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 APT55_RS00035 1a2669abb33ed45adcfd5b34d3ad620d 422 SUPERFAMILY SSF51445 67 411 1.04E-79 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS00035 1a2669abb33ed45adcfd5b34d3ad620d 422 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 76 386 6.7E-62 T 06-07-2017 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 APT55_RS00035 1a2669abb33ed45adcfd5b34d3ad620d 422 Gene3D G3DSA:3.20.20.80 66 411 2.2E-108 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:3.40.50.2300 834 959 2.3E-33 T 06-07-2017 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 523 660 2.9E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:3.30.565.10 478 660 6.3E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:2.30.30.40 756 801 1.0E-12 T 06-07-2017 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:2.30.30.40 662 683 1.0E-12 T 06-07-2017 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Pfam PF00072 Response regulator receiver domain 841 953 4.8E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SMART SM00448 839 953 1.8E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SUPERFAMILY SSF47226 8 110 1.22E-22 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SUPERFAMILY SSF50341 662 801 1.01E-22 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Pfam PF01584 CheW-like domain 667 803 1.6E-18 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SMART SM00073 6 104 8.3E-18 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:1.20.120.160 8 150 3.6E-26 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Gene3D G3DSA:1.10.287.560 338 395 1.3E-6 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SUPERFAMILY SSF52172 839 958 1.71E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 Pfam PF01627 Hpt domain 8 73 2.0E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SMART SM00260 654 801 7.3E-10 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 579 1.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 659 1.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 PRINTS PR00344 Bacterial sensor protein C-terminal signature 622 640 1.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 616 1.8E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SMART SM01231 337 475 1.2E-4 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SUPERFAMILY SSF55874 478 659 4.19E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03965 95ce467e9483b754047d76a2243de6f3 963 SMART SM00387 520 662 1.5E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13995 e6ed31b24c22ec04751571736b380172 276 Gene3D G3DSA:3.40.1780.10 107 269 1.1E-78 T 06-07-2017 APT55_RS13995 e6ed31b24c22ec04751571736b380172 276 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 269 1.6E-111 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT55_RS13995 e6ed31b24c22ec04751571736b380172 276 Gene3D G3DSA:2.40.10.240 2 63 4.9E-13 T 06-07-2017 APT55_RS13995 e6ed31b24c22ec04751571736b380172 276 Pfam PF02547 Queuosine biosynthesis protein 3 268 9.1E-107 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT55_RS13995 e6ed31b24c22ec04751571736b380172 276 SUPERFAMILY SSF111337 2 269 5.1E-102 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 SUPERFAMILY SSF53807 33 492 7.43E-161 T 06-07-2017 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 89 96 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 Gene3D G3DSA:3.40.50.1980 358 494 2.7E-61 T 06-07-2017 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 Gene3D G3DSA:3.40.50.1980 20 215 1.3E-71 T 06-07-2017 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 Gene3D G3DSA:3.40.50.1980 230 331 2.3E-49 T 06-07-2017 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 480 1.8E-105 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 38 486 3.7E-184 T 06-07-2017 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 160 174 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11610 7560e5416d15e1d681ac0c34a1157321 494 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 22 492 1.7E-263 T 06-07-2017 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Gene3D G3DSA:1.10.10.10 43 76 1.2E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Gene3D G3DSA:1.10.10.10 156 207 2.6E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 PRINTS PR00046 Major sigma-70 factor signature 262 274 3.4E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 PRINTS PR00046 Major sigma-70 factor signature 110 123 3.4E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 PRINTS PR00046 Major sigma-70 factor signature 282 297 3.4E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 PRINTS PR00046 Major sigma-70 factor signature 297 308 3.4E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 PRINTS PR00046 Major sigma-70 factor signature 134 142 3.4E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 SUPERFAMILY SSF88659 232 310 1.1E-18 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Pfam PF04542 Sigma-70 region 2 84 155 2.1E-13 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Pfam PF04539 Sigma-70 region 3 165 237 8.1E-12 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 SUPERFAMILY SSF88946 5 155 1.21E-41 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Pfam PF00140 Sigma-70 factor, region 1.2 7 37 9.2E-11 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Gene3D G3DSA:1.10.601.10 4 38 1.6E-40 T 06-07-2017 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Gene3D G3DSA:1.10.601.10 77 155 1.6E-40 T 06-07-2017 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Gene3D G3DSA:1.10.10.10 252 317 2.7E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 Pfam PF04545 Sigma-70, region 4 258 308 3.1E-14 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 80 310 1.5E-31 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 SUPERFAMILY SSF88659 159 231 6.1E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30020 fac7153693fe94626f0c855622ca0fdd 321 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 282 308 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS07290 3dcdc8c25155c32670686c8e062ad0d0 269 PIRSF PIRSF000883 1 259 5.0E-74 T 06-07-2017 IPR011152 Phosphoesterase MJ0912 APT55_RS07290 3dcdc8c25155c32670686c8e062ad0d0 269 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 216 2.1E-29 T 06-07-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 APT55_RS07290 3dcdc8c25155c32670686c8e062ad0d0 269 SUPERFAMILY SSF56300 1 254 3.12E-64 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS07290 3dcdc8c25155c32670686c8e062ad0d0 269 Gene3D G3DSA:3.60.21.10 1 254 1.9E-81 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 Gene3D G3DSA:3.40.50.150 92 150 4.3E-5 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 SUPERFAMILY SSF53335 23 149 2.21E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 Gene3D G3DSA:3.40.50.150 505 544 6.7E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 Gene3D G3DSA:3.40.50.150 583 671 6.7E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 SUPERFAMILY SSF53335 506 535 3.79E-15 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 SUPERFAMILY SSF53335 581 694 3.79E-15 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 Pfam PF06634 Protein of unknown function (DUF1156) 13 63 4.1E-7 T 06-07-2017 IPR009537 Domain of unknown function DUF1156 APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 108 159 8.1E-5 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 518 524 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 SUPERFAMILY SSF53335 492 537 8.32E-8 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30135 e452e69c38be9573847a3dced05966cc 930 SUPERFAMILY SSF53335 107 152 8.32E-8 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 SUPERFAMILY SSF90123 6 297 4.19E-26 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 Gene3D G3DSA:3.40.50.300 323 530 4.4E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 Gene3D G3DSA:1.20.1560.10 5 298 1.6E-21 T 06-07-2017 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 SUPERFAMILY SSF52540 319 529 6.71E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 3 530 7.4E-148 T 06-07-2017 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 ProSitePatterns PS00211 ABC transporters family signature. 450 464 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 Pfam PF00005 ABC transporter 344 477 5.8E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 Pfam PF00664 ABC transporter transmembrane region 19 251 7.0E-11 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07960 af4babfa56d0426bb2c85684225b8372 537 SMART SM00382 351 526 1.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS23020 3c50d405c89ba0df8c94a24b7d812e3b 217 SUPERFAMILY SSF102588 14 215 1.31E-27 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 APT55_RS23020 3c50d405c89ba0df8c94a24b7d812e3b 217 Pfam PF02585 GlcNAc-PI de-N-acetylase 17 131 1.7E-11 T 06-07-2017 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 APT55_RS23020 3c50d405c89ba0df8c94a24b7d812e3b 217 Gene3D G3DSA:3.40.50.10320 14 214 2.5E-29 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SUPERFAMILY SSF48439 17 167 2.88E-39 T 06-07-2017 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF13414 TPR repeat 361 393 4.7E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 388 421 7.8E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 223 256 4.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 116 149 3.8E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 354 387 3.6E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 320 353 0.001 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 82 115 3.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 257 290 1.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 49 81 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 422 455 0.68 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 15 48 0.0013 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SMART SM00028 189 222 0.0012 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Gene3D G3DSA:1.25.40.10 85 160 4.2E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Gene3D G3DSA:1.25.40.10 195 257 4.2E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Gene3D G3DSA:1.25.40.10 15 84 1.7E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF13181 Tetratricopeptide repeat 18 45 0.0015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SUPERFAMILY SSF48452 194 353 1.45E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF07719 Tetratricopeptide repeat 323 353 7.3E-6 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF13432 Tetratricopeptide repeat 193 255 2.4E-10 T 06-07-2017 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF13432 Tetratricopeptide repeat 395 449 8.3E-8 T 06-07-2017 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Gene3D G3DSA:1.25.40.10 258 362 4.2E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 SUPERFAMILY SSF48452 319 460 1.74E-35 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF00515 Tetratricopeptide repeat 50 81 6.6E-10 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF00515 Tetratricopeptide repeat 117 149 1.2E-6 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Pfam PF00515 Tetratricopeptide repeat 83 115 1.5E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS21055 6912b11ee7e1ae759f413edb8ce58e78 470 Gene3D G3DSA:1.25.40.10 363 468 1.2E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Pfam PF00005 ABC transporter 770 917 3.6E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 ProSitePatterns PS00211 ABC transporters family signature. 889 903 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 SUPERFAMILY SSF51206 4 122 2.62E-16 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Pfam PF00027 Cyclic nucleotide-binding domain 38 122 7.1E-11 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 SMART SM00100 18 136 1.2E-6 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Gene3D G3DSA:2.60.120.10 16 122 3.4E-12 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 SUPERFAMILY SSF90123 423 731 1.57E-62 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Gene3D G3DSA:1.20.1560.10 422 729 1.0E-73 T 06-07-2017 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Pfam PF00664 ABC transporter transmembrane region 439 705 6.7E-46 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 SMART SM00382 778 969 2.7E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 Gene3D G3DSA:3.40.50.300 756 981 1.5E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30535 5d03868af8f64cf10bcae3dc8e4302e7 992 SUPERFAMILY SSF52540 744 987 4.82E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11085 358627a5b383995d154be7c580857c54 652 Gene3D G3DSA:3.40.50.2300 2 130 6.7E-25 T 06-07-2017 APT55_RS11085 358627a5b383995d154be7c580857c54 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 454 1.9E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11085 358627a5b383995d154be7c580857c54 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 468 1.9E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11085 358627a5b383995d154be7c580857c54 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 508 1.9E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11085 358627a5b383995d154be7c580857c54 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 489 1.9E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Pfam PF00072 Response regulator receiver domain 531 641 9.7E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Pfam PF00072 Response regulator receiver domain 3 113 5.0E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 509 8.8E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 160 271 1.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00448 529 641 3.9E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00448 1 116 6.7E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Gene3D G3DSA:1.10.287.130 276 343 3.0E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Pfam PF00512 His Kinase A (phospho-acceptor) domain 280 344 7.3E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Gene3D G3DSA:3.30.565.10 350 509 1.1E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00091 159 227 1.9E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 SUPERFAMILY SSF52172 2 160 1.99E-25 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00086 227 265 5.6E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS11085 358627a5b383995d154be7c580857c54 652 SUPERFAMILY SSF55874 337 509 1.57E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 SUPERFAMILY SSF52172 530 646 4.55E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00388 280 347 5.6E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Gene3D G3DSA:3.30.450.20 140 271 6.2E-23 T 06-07-2017 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Pfam PF08447 PAS fold 182 258 3.5E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS11085 358627a5b383995d154be7c580857c54 652 Gene3D G3DSA:3.40.50.2300 527 644 1.9E-27 T 06-07-2017 APT55_RS11085 358627a5b383995d154be7c580857c54 652 SUPERFAMILY SSF47384 275 343 1.9E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11085 358627a5b383995d154be7c580857c54 652 SUPERFAMILY SSF55785 168 267 4.83E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS11085 358627a5b383995d154be7c580857c54 652 SMART SM00387 388 511 3.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12425 c7a289b8ee0669b72f27538f331fa953 126 Pfam PF02341 RbcX protein 1 111 3.6E-50 T 06-07-2017 IPR003435 Chaperonin-like RbcX APT55_RS12425 c7a289b8ee0669b72f27538f331fa953 126 SUPERFAMILY SSF158615 2 117 1.83E-42 T 06-07-2017 APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 99 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 Gene3D G3DSA:1.10.600.10 4 321 4.8E-109 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 Pfam PF00348 Polyprenyl synthetase 31 274 2.4E-79 T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 207 219 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 TIGRFAM TIGR02749 prenyl_cyano: solanesyl diphosphate synthase 3 323 1.3E-165 T 06-07-2017 IPR014120 Solanesyl diphosphate synthase GO:0015979|GO:0016765 APT55_RS12185 cb52583e2db081ea8c314a9588f16946 323 SUPERFAMILY SSF48576 2 322 2.59E-92 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS21200 fb23d6ecbe08c546e713985bfb62efc3 265 Gene3D G3DSA:3.90.850.10 50 254 3.6E-84 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS21200 fb23d6ecbe08c546e713985bfb62efc3 265 Pfam PF10370 Domain of unknown function (DUF2437) 4 54 2.3E-10 T 06-07-2017 IPR018833 Domain of unknown function DUF2437 APT55_RS21200 fb23d6ecbe08c546e713985bfb62efc3 265 SUPERFAMILY SSF56529 50 253 5.89E-74 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS21200 fb23d6ecbe08c546e713985bfb62efc3 265 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 59 252 1.4E-63 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 927 1039 6.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF08448 PAS fold 49 164 3.0E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55785 29 160 1.05E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00065 652 803 1.5E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00065 464 624 9.5E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.450.20 160 294 9.6E-24 T 06-07-2017 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.450.20 29 159 2.0E-22 T 06-07-2017 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF52172 1059 1183 5.83E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF00512 His Kinase A (phospho-acceptor) domain 816 878 8.0E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 170 302 2.9E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 310 422 1.8E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 38 166 1.0E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00086 120 162 1.1E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00086 253 296 4.8 T 06-07-2017 IPR001610 PAC motif APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00086 376 418 5.5E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00091 303 370 3.5E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00091 41 111 4.6E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00091 174 240 2.9E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00387 927 1040 1.2E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF13426 PAS domain 185 295 1.2E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF13426 PAS domain 314 417 8.6E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 PRINTS PR00344 Bacterial sensor protein C-terminal signature 964 978 3.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1024 1037 3.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 PRINTS PR00344 Bacterial sensor protein C-terminal signature 999 1017 3.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 PRINTS PR00344 Bacterial sensor protein C-terminal signature 982 992 3.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.565.10 867 1039 3.4E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55781 464 627 6.54E-20 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55785 310 421 3.14E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00448 1061 1176 4.6E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF01590 GAF domain 464 614 1.1E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF13185 GAF domain 651 793 1.6E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.450.40 453 622 4.2E-31 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55781 635 815 9.6E-24 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.450.20 309 421 4.4E-26 T 06-07-2017 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.40.50.2300 1059 1183 4.5E-34 T 06-07-2017 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:1.10.287.130 808 866 1.9E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Gene3D G3DSA:3.30.450.40 634 801 5.7E-25 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SMART SM00388 815 881 6.9E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 Pfam PF00072 Response regulator receiver domain 1063 1176 3.8E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55874 870 1038 4.85E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF47384 799 881 7.85E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30950 e9758d9e85d6f8238e0fa471e6db7982 1190 SUPERFAMILY SSF55785 159 294 2.09E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS06830 2cf7d7ef1378ce38a4ec202f3fd6fa2f 401 Pfam PF01098 Cell cycle protein 24 371 1.2E-95 T 06-07-2017 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 APT55_RS06830 2cf7d7ef1378ce38a4ec202f3fd6fa2f 401 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 328 352 - T 06-07-2017 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 601 671 3.2E-15 T 06-07-2017 IPR001357 BRCT domain APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SUPERFAMILY SSF56091 10 320 3.08E-115 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:2.40.50.140 324 394 7.8E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:1.10.287.610 9 73 9.2E-28 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:3.40.50.10190 599 672 8.7E-26 T 06-07-2017 IPR001357 BRCT domain APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Hamap MF_01588 DNA ligase [ligA]. 9 671 49.382 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF14520 Helix-hairpin-helix domain 449 505 2.8E-9 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SMART SM00278 483 502 0.52 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SMART SM00278 449 468 93.0 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SMART SM00278 547 566 330.0 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 PIRSF PIRSF001604 4 673 2.6E-246 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:3.30.470.30 127 256 6.8E-48 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:1.10.150.20 507 587 3.1E-25 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 18 667 2.4E-261 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 335 350 - T 06-07-2017 IPR033136 NAD-dependent DNA ligase, conserved site APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 326 402 4.0E-35 T 06-07-2017 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF12826 Helix-hairpin-helix motif 513 576 2.1E-22 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SMART SM00292 597 673 1.0E-12 T 06-07-2017 IPR001357 BRCT domain APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SUPERFAMILY SSF52113 599 672 3.2E-20 T 06-07-2017 IPR001357 BRCT domain APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 10 322 1.3E-130 T 06-07-2017 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 411 437 2.6E-9 T 06-07-2017 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 Gene3D G3DSA:1.10.150.20 439 506 9.0E-26 T 06-07-2017 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SMART SM00532 10 451 8.3E-264 T 06-07-2017 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SUPERFAMILY SSF50249 321 404 1.37E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS13005 847fd9ef9a64ab7d4394e46d1c3714f7 673 SUPERFAMILY SSF47781 407 585 3.11E-57 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS12030 f6e1e487fc46aa20a3cb829b8ec5ed23 132 SUPERFAMILY SSF88723 3 130 1.7E-17 T 06-07-2017 IPR029060 PIN domain-like APT55_RS12030 f6e1e487fc46aa20a3cb829b8ec5ed23 132 Gene3D G3DSA:3.40.50.1010 3 129 4.7E-20 T 06-07-2017 IPR029060 PIN domain-like APT55_RS29660 98ffa09674af1b451a831f8cd2585d56 81 Gene3D G3DSA:1.10.260.40 9 57 2.2E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS29660 98ffa09674af1b451a831f8cd2585d56 81 SUPERFAMILY SSF47413 10 48 2.69E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS29660 98ffa09674af1b451a831f8cd2585d56 81 Pfam PF01381 Helix-turn-helix 12 49 4.5E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 4.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 Gene3D G3DSA:3.40.50.720 6 151 8.0E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 Gene3D G3DSA:3.40.50.720 187 254 8.0E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 SUPERFAMILY SSF51735 6 238 4.55E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 TIGRFAM TIGR01289 LPOR: light-dependent protochlorophyllide reductase 4 322 6.5E-185 T 06-07-2017 IPR005979 Light-dependent protochlorophyllide reductase GO:0016630|GO:0055114 KEGG: 00860+1.3.1.33 APT55_RS03810 2fe8715d9b94bbd3821ebd18b581ea8e 322 Pfam PF00106 short chain dehydrogenase 8 132 3.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 Pfam PF03190 Protein of unknown function, DUF255 3 165 4.4E-69 T 06-07-2017 IPR004879 Domain of unknown function DUF255 APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 SUPERFAMILY SSF52833 1 141 5.51E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 SUPERFAMILY SSF48208 195 563 1.08E-42 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 PIRSF PIRSF006402 1 681 6.2E-196 T 06-07-2017 IPR024705 Spermatogenesis-associated protein 20 APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 Gene3D G3DSA:1.50.10.10 432 602 2.8E-6 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 Gene3D G3DSA:1.50.10.10 224 318 3.0E-6 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS08985 c8c4763bfef3b6c01725977924cf1cba 687 Gene3D G3DSA:3.40.30.10 20 144 3.1E-31 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01995 bdd366d81477a89d68b922c2cdd6a680 74 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 7 66 3.5E-12 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system APT55_RS01995 bdd366d81477a89d68b922c2cdd6a680 74 SUPERFAMILY SSF143100 1 66 1.44E-19 T 06-07-2017 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Gene3D G3DSA:1.50.10.10 337 706 2.3E-140 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 PIRSF PIRSF036289 8 787 8.3E-219 T 06-07-2017 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Gene3D G3DSA:2.70.98.40 12 279 1.2E-76 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 SUPERFAMILY SSF74650 12 277 1.41E-59 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 23 277 4.9E-60 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 725 775 1.0E-10 T 06-07-2017 IPR005194 Glycoside hydrolase family 65, C-terminal APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 342 721 3.9E-127 T 06-07-2017 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 Gene3D G3DSA:2.60.420.10 708 778 3.7E-19 T 06-07-2017 APT55_RS28875 84e29fa91661d4fd81613c57c769af34 787 SUPERFAMILY SSF48208 287 772 3.15E-127 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 7.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 7.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 Gene3D G3DSA:3.40.50.720 5 248 6.7E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 190 1.2E-5 T 06-07-2017 APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 SUPERFAMILY SSF51735 1 249 1.58E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 Pfam PF00106 short chain dehydrogenase 6 195 1.1E-51 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.2E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.2E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03095 4330fabd717b1f485b5876a7bf4eea65 274 PIRSF PIRSF000126 1 261 4.6E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS11350 a82b9eea299b973b7bb359436d80b58b 45 SUPERFAMILY SSF161037 9 45 2.62E-17 T 06-07-2017 APT55_RS11350 a82b9eea299b973b7bb359436d80b58b 45 Hamap MF_00441 Photosystem II reaction center protein K [psbK]. 7 45 19.462 T 06-07-2017 IPR003687 Photosystem II PsbK GO:0009523|GO:0009539|GO:0015979 APT55_RS11350 a82b9eea299b973b7bb359436d80b58b 45 ProDom PD004458 PHOTOSYSTEM II K CHLOROPLAST CENTER REACTION PSII-K PHOTOSYNTHESIS PRECURSOR PLASTID 5 45 1.0E-14 T 06-07-2017 IPR003687 Photosystem II PsbK GO:0009523|GO:0009539|GO:0015979 APT55_RS11350 a82b9eea299b973b7bb359436d80b58b 45 Pfam PF02533 Photosystem II 4 kDa reaction centre component 5 45 4.3E-26 T 06-07-2017 IPR003687 Photosystem II PsbK GO:0009523|GO:0009539|GO:0015979 APT55_RS24225 fb1ccd51dc8ad2f8fa52467d76605892 237 TIGRFAM TIGR04155 cyano_PEP: PEP-CTERM protein sorting domain, cyanobacterial subclass 209 232 2.9E-5 T 06-07-2017 IPR026374 PEP-CTERM protein sorting domain, cyanobacterial subclass APT55_RS24225 fb1ccd51dc8ad2f8fa52467d76605892 237 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 209 232 9.6E-7 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS29320 f80d3f151b8059a8e775d5599c983304 453 Gene3D G3DSA:1.10.287.110 396 451 3.4E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS29320 f80d3f151b8059a8e775d5599c983304 453 Pfam PF07498 Rho termination factor, N-terminal domain 3 31 3.1E-5 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 APT55_RS29320 f80d3f151b8059a8e775d5599c983304 453 SUPERFAMILY SSF46565 398 449 2.49E-14 T 06-07-2017 IPR001623 DnaJ domain APT55_RS29320 f80d3f151b8059a8e775d5599c983304 453 SMART SM00271 398 452 2.9E-8 T 06-07-2017 IPR001623 DnaJ domain APT55_RS29320 f80d3f151b8059a8e775d5599c983304 453 Pfam PF00226 DnaJ domain 402 449 3.4E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.40.50.2300 1078 1209 1.0E-37 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1018 1036 2.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1002 1012 2.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 984 998 2.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1042 1055 2.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55785 516 640 1.31E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:1.10.287.130 827 896 1.7E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.40 645 826 2.2E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55781 673 810 1.05E-16 T 06-07-2017 IPR029016 GAF domain-like APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55785 253 380 1.17E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.565.10 908 1052 7.3E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF52172 1081 1211 2.13E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00448 1083 1197 3.3E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55874 889 1058 2.75E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF00072 Response regulator receiver domain 1085 1197 4.9E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 947 1054 1.1E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF13426 PAS domain 550 640 0.016 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF13426 PAS domain 426 517 1.7E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF13426 PAS domain 27 128 2.2E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF00512 His Kinase A (phospho-acceptor) domain 834 900 8.7E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 136 8.5E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 138 263 8.3E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 389 3.9E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 405 526 9.8E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 527 649 1.7E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55785 379 517 2.97E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF47384 821 901 5.3E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00065 670 822 1.7E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00387 947 1058 1.2E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF08447 PAS fold 297 375 3.4E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.20 19 135 2.1E-15 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00388 834 900 1.1E-25 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55785 25 138 4.01E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00091 14 82 1.6E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00091 408 478 0.0033 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00091 141 211 1.1 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00091 531 601 0.022 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00091 268 334 0.16 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF01590 GAF domain 671 810 8.0E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Pfam PF12860 PAS fold 152 261 7.3E-7 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SUPERFAMILY SSF55785 126 254 3.14E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.20 380 516 1.5E-15 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.20 136 254 5.8E-14 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.20 517 639 9.9E-17 T 06-07-2017 APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00086 216 256 150.0 T 06-07-2017 IPR001610 PAC motif APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00086 340 382 1.3E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00086 481 519 14.0 T 06-07-2017 IPR001610 PAC motif APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00086 87 129 0.27 T 06-07-2017 IPR001610 PAC motif APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 SMART SM00086 604 645 28.0 T 06-07-2017 IPR001610 PAC motif APT55_RS22215 08a6b1390d8e66f998ec7ffa58cf726a 1290 Gene3D G3DSA:3.30.450.20 259 379 4.3E-29 T 06-07-2017 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 SUPERFAMILY SSF48264 14 444 1.03E-99 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 386 395 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 Gene3D G3DSA:1.10.630.10 14 445 2.8E-109 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00385 P450 superfamily signature 261 278 4.4E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00385 P450 superfamily signature 311 322 4.4E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00385 P450 superfamily signature 393 404 4.4E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00385 P450 superfamily signature 384 393 4.4E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 310 328 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 270 296 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 32 51 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 250 267 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 351 375 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 383 393 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 PRINTS PR00463 E-class P450 group I signature 393 416 4.7E-31 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07835 0819f9af981d1229ae3d618a69ce9b5b 447 Pfam PF00067 Cytochrome P450 26 436 4.3E-83 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13215 182f93062448078b325517efa8d68495 206 Pfam PF11833 Protein of unknown function (DUF3353) 14 204 3.5E-64 T 06-07-2017 IPR021788 Protein CHAPERONE-LIKE PROTEIN OF POR1-like APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 Gene3D G3DSA:1.10.10.10 81 150 9.3E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 SUPERFAMILY SSF46785 78 150 1.57E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 3 152 2.6E-41 T 06-07-2017 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 SUPERFAMILY SSF46785 2 78 6.44E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 Pfam PF04079 Segregation and condensation complex subunit ScpB 7 154 6.4E-39 T 06-07-2017 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 APT55_RS12600 c7a9f2d6801eb8db3bc354831508ac8c 212 Gene3D G3DSA:1.10.10.10 2 77 1.9E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 Gene3D G3DSA:3.50.50.60 202 318 1.6E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 Gene3D G3DSA:3.50.50.60 1 101 1.6E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 Pfam PF01593 Flavin containing amine oxidoreductase 10 453 2.8E-74 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 PRINTS PR00757 Flavin-containing amine oxidase signature 2 21 2.5E-5 T 06-07-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 PRINTS PR00757 Flavin-containing amine oxidase signature 435 452 2.5E-5 T 06-07-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 TIGRFAM TIGR02731 phytoene_desat: phytoene desaturase 2 453 1.1E-259 T 06-07-2017 IPR014102 Phytoene desaturase GO:0016117|GO:0016705|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 SUPERFAMILY SSF51905 1 314 5.61E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26775 901cd603278b8e626cc79cc7607ea40e 471 SUPERFAMILY SSF51905 414 454 5.61E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16425 7d7ce0e09c780bc34b86cec9a2054cd8 339 SUPERFAMILY SSF53659 2 329 3.17E-94 T 06-07-2017 APT55_RS16425 7d7ce0e09c780bc34b86cec9a2054cd8 339 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 327 31.881 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 APT55_RS16425 7d7ce0e09c780bc34b86cec9a2054cd8 339 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 3 327 1.5E-111 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 APT55_RS16425 7d7ce0e09c780bc34b86cec9a2054cd8 339 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 33 323 1.5E-100 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 APT55_RS16425 7d7ce0e09c780bc34b86cec9a2054cd8 339 Gene3D G3DSA:3.40.718.10 1 329 2.2E-112 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 Pfam PF00069 Protein kinase domain 10 219 2.8E-31 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 Gene3D G3DSA:1.10.510.10 110 253 1.6E-28 T 06-07-2017 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 135 147 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 Gene3D G3DSA:3.30.200.20 5 109 1.4E-15 T 06-07-2017 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 SMART SM00220 10 261 1.9E-22 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS20265 4b8bb74262d98db5cd7919d5b89ca8f6 272 SUPERFAMILY SSF56112 4 259 4.32E-50 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 Pfam PF12697 Alpha/beta hydrolase family 21 259 1.7E-16 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 7.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 7.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 7.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 SUPERFAMILY SSF53474 8 264 6.61E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03575 12fd1070e97adb6732d11333ffe23698 268 Gene3D G3DSA:3.40.50.1820 8 264 1.1E-61 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS00240 6dc3bfc4247f20466d0f4f7bf2b9732b 182 Gene3D G3DSA:3.40.1350.10 35 152 5.6E-9 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS00240 6dc3bfc4247f20466d0f4f7bf2b9732b 182 Pfam PF04471 Restriction endonuclease 37 148 2.5E-6 T 06-07-2017 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 APT55_RS00240 6dc3bfc4247f20466d0f4f7bf2b9732b 182 SUPERFAMILY SSF52980 36 153 1.29E-11 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Gene3D G3DSA:3.40.50.2300 5 128 7.7E-29 T 06-07-2017 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Gene3D G3DSA:1.10.287.130 163 224 8.6E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Pfam PF00072 Response regulator receiver domain 6 116 4.5E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SUPERFAMILY SSF55874 230 386 8.25E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SUPERFAMILY SSF52172 4 142 2.99E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SMART SM00448 4 116 1.0E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SUPERFAMILY SSF47384 160 239 1.92E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SMART SM00387 278 387 7.2E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 387 6.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Gene3D G3DSA:3.30.565.10 225 386 1.0E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 SMART SM00388 171 239 1.1E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 Pfam PF00512 His Kinase A (phospho-acceptor) domain 172 238 1.9E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 385 6.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 343 6.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 329 6.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12545 9e67fc7de32a1f092272a4f90889a126 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 366 6.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21010 ab08f7c3f853133cdac6a96c6e7f3b3e 441 SUPERFAMILY SSF50952 86 437 8.37E-40 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS21010 ab08f7c3f853133cdac6a96c6e7f3b3e 441 Pfam PF07995 Glucose / Sorbosone dehydrogenase 102 360 1.9E-15 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 APT55_RS21010 ab08f7c3f853133cdac6a96c6e7f3b3e 441 Gene3D G3DSA:2.120.10.30 87 438 1.7E-62 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 67 292 2.2E-33 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Gene3D G3DSA:1.10.10.10 141 193 1.1E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 SUPERFAMILY SSF88659 144 217 1.4E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Pfam PF00140 Sigma-70 factor, region 1.2 2 34 5.2E-10 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 PRINTS PR00046 Major sigma-70 factor signature 119 127 8.3E-17 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 PRINTS PR00046 Major sigma-70 factor signature 242 254 8.3E-17 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 PRINTS PR00046 Major sigma-70 factor signature 278 289 8.3E-17 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 PRINTS PR00046 Major sigma-70 factor signature 95 108 8.3E-17 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 PRINTS PR00046 Major sigma-70 factor signature 263 278 8.3E-17 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Gene3D G3DSA:1.10.601.10 2 140 5.2E-51 T 06-07-2017 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 SUPERFAMILY SSF88659 202 293 1.18E-19 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Pfam PF04539 Sigma-70 region 3 150 225 2.2E-23 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Pfam PF04545 Sigma-70, region 4 240 290 1.2E-11 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Gene3D G3DSA:1.10.10.10 232 299 1.6E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 Pfam PF04542 Sigma-70 region 2 71 137 7.9E-21 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS16110 735a4e8c17f15ecfc1d30e10a56fe2bd 302 SUPERFAMILY SSF88946 2 140 3.27E-48 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS21520 58422a2d775926112de450ea0536af14 558 Gene3D G3DSA:2.160.20.10 49 313 2.1E-28 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS21520 58422a2d775926112de450ea0536af14 558 Gene3D G3DSA:3.30.70.1070 525 556 1.3E-4 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 APT55_RS21520 58422a2d775926112de450ea0536af14 558 SUPERFAMILY SSF51126 49 363 2.65E-40 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS21520 58422a2d775926112de450ea0536af14 558 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 236 277 1.8E-6 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS21520 58422a2d775926112de450ea0536af14 558 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 173 211 1.0E-4 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS21520 58422a2d775926112de450ea0536af14 558 Pfam PF07602 Protein of unknown function (DUF1565) 62 327 1.2E-49 T 06-07-2017 IPR011459 Domain of unknown function DUF1565 APT55_RS21520 58422a2d775926112de450ea0536af14 558 SMART SM00710 197 219 48.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS21520 58422a2d775926112de450ea0536af14 558 SMART SM00710 220 241 860.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS21520 58422a2d775926112de450ea0536af14 558 SMART SM00710 174 196 660.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS21520 58422a2d775926112de450ea0536af14 558 SMART SM00710 242 263 630.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS21520 58422a2d775926112de450ea0536af14 558 SMART SM00710 264 286 410.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 Pfam PF00905 Penicillin binding protein transpeptidase domain 274 588 4.5E-84 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 Gene3D G3DSA:3.40.710.10 254 595 7.1E-100 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 SUPERFAMILY SSF56601 249 595 8.54E-97 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 Pfam PF03717 Penicillin-binding Protein dimerisation domain 88 194 2.2E-9 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 SUPERFAMILY SSF56519 86 234 1.12E-26 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT55_RS24585 dae8b32a80758db85f55fa14a397f94b 614 Gene3D G3DSA:3.90.1310.10 155 253 4.0E-13 T 06-07-2017 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 177 201 - T 06-07-2017 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 Pfam PF01218 Coproporphyrinogen III oxidase 25 343 1.3E-137 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 SUPERFAMILY SSF102886 234 343 3.14E-137 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 SUPERFAMILY SSF102886 19 203 3.14E-137 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 Gene3D G3DSA:3.40.1500.10 17 343 9.8E-139 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PIRSF PIRSF000166 1 344 5.2E-138 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 19 318 57.0 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 47 63 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 173 202 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 303 329 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 136 158 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 275 302 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 64 85 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS26265 c85d99063bd19526bafd294bb8556f48 353 PRINTS PR00073 Coprogen oxidase signature 106 130 4.5E-88 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS18240 8a470b125cdb229e34d38aee8c97acc0 76 Pfam PF03869 Arc-like DNA binding domain 12 40 2.6E-4 T 06-07-2017 IPR005569 Arc-like DNA binding domain GO:0003677 APT55_RS18240 8a470b125cdb229e34d38aee8c97acc0 76 SUPERFAMILY SSF47598 10 46 1.45E-5 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 APT55_RS18240 8a470b125cdb229e34d38aee8c97acc0 76 Gene3D G3DSA:1.10.1220.10 11 54 1.6E-7 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Pfam PF16124 RecQ zinc-binding 410 460 1.2E-7 T 06-07-2017 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 372 2.9E-98 T 06-07-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Gene3D G3DSA:3.40.50.300 414 445 2.1E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Gene3D G3DSA:3.40.50.300 201 357 2.1E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Pfam PF00270 DEAD/DEAH box helicase 18 177 1.1E-18 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Gene3D G3DSA:3.40.50.300 5 193 4.7E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 SMART SM00490 244 325 1.1E-23 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 SUPERFAMILY SSF52540 55 334 2.37E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 Pfam PF00271 Helicase conserved C-terminal domain 221 325 5.3E-13 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS25840 e0a09a96552a4952265f7f7cb6463aa4 462 SMART SM00487 12 210 9.5E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 SUPERFAMILY SSF82714 44 130 3.66E-17 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 Gene3D G3DSA:1.10.3850.10 136 351 9.3E-53 T 06-07-2017 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 PRINTS PR00702 Acriflavin resistance protein family signature 323 346 8.5E-9 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 PRINTS PR00702 Acriflavin resistance protein family signature 217 238 8.5E-9 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 PRINTS PR00702 Acriflavin resistance protein family signature 190 213 8.5E-9 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 PRINTS PR00702 Acriflavin resistance protein family signature 245 269 8.5E-9 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 PRINTS PR00702 Acriflavin resistance protein family signature 298 321 8.5E-9 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 Pfam PF00873 AcrB/AcrD/AcrF family 2 349 3.7E-109 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 Gene3D G3DSA:3.30.2090.10 44 130 5.2E-18 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS18850 8ec84c66beb82ff939cf13b2b6b10f2f 379 SUPERFAMILY SSF82866 127 353 1.23E-47 T 06-07-2017 APT55_RS25090 e6f46482315cdc646734442effa76f8a 414 Pfam PF07690 Major Facilitator Superfamily 7 352 5.1E-19 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS25090 e6f46482315cdc646734442effa76f8a 414 SUPERFAMILY SSF103473 2 401 3.14E-31 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS25090 e6f46482315cdc646734442effa76f8a 414 Gene3D G3DSA:1.20.1250.20 2 186 4.1E-15 T 06-07-2017 APT55_RS01010 ef6464b957969c4ca82b3709cc3015a2 166 Pfam PF02620 Uncharacterized ACR, COG1399 49 162 3.5E-17 T 06-07-2017 IPR003772 Protein of unknown function DUF177 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SUPERFAMILY SSF55874 215 384 6.94E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 383 2.2E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 365 2.2E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 340 2.2E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Gene3D G3DSA:1.10.287.130 153 210 2.1E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Gene3D G3DSA:3.30.565.10 211 384 1.6E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 272 385 2.9E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SMART SM00387 271 386 2.6E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SUPERFAMILY SSF52172 23 157 7.26E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SUPERFAMILY SSF47384 148 226 8.24E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SMART SM00388 162 225 1.3E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 SMART SM00448 23 136 5.2E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Gene3D G3DSA:3.40.50.2300 21 146 1.0E-38 T 06-07-2017 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Pfam PF00512 His Kinase A (phospho-acceptor) domain 163 225 4.9E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07605 f58a287cc9e6c68895257dc20d2a5a3d 387 Pfam PF00072 Response regulator receiver domain 25 136 3.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10420 72c6402a3648442ffb742de22d620636 201 SUPERFAMILY SSF81452 15 200 8.89E-58 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10420 72c6402a3648442ffb742de22d620636 201 Gene3D G3DSA:1.20.120.80 24 201 2.1E-52 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10420 72c6402a3648442ffb742de22d620636 201 Pfam PF00510 Cytochrome c oxidase subunit III 20 200 1.2E-33 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 Gene3D G3DSA:3.20.20.70 21 286 5.1E-67 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 SMART SM00729 50 258 1.5E-18 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 SUPERFAMILY SSF102114 18 278 1.83E-63 T 06-07-2017 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 Hamap MF_00206 Lipoyl synthase [lipA]. 1 289 150.916 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 Pfam PF04055 Radical SAM superfamily 56 218 3.5E-16 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 PIRSF PIRSF005963 1 287 2.0E-131 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS16520 5dd9757b2637bcaaa60d241301cd9769 289 TIGRFAM TIGR00510 lipA: lipoyl synthase 4 284 5.2E-117 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 220 331 7.6E-33 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 126 142 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 SMART SM00825 Beta-ketoacyl synthase 3 362 1.9E-11 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 60 211 1.3E-28 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 Gene3D G3DSA:3.40.47.10 59 225 2.0E-34 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 SUPERFAMILY SSF53901 2 219 6.55E-38 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 SUPERFAMILY SSF53901 186 370 1.79E-53 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS11985 a667f8f967b2986644dff9901a39d6b6 370 Gene3D G3DSA:3.40.47.10 229 370 1.7E-44 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55874 813 985 7.2E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.450.40 341 485 9.4E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.450.40 15 192 2.0E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55781 317 485 3.71E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00388 758 824 7.1E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF52172 1006 1126 1.57E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00086 567 609 0.0046 T 06-07-2017 IPR001610 PAC motif APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00086 693 731 3.1E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.450.20 193 309 9.6E-14 T 06-07-2017 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.450.20 486 622 2.4E-21 T 06-07-2017 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.450.20 623 762 5.9E-30 T 06-07-2017 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55785 477 607 3.49E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55785 627 733 2.9E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:1.10.287.130 763 820 2.0E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.40.50.2300 1005 1127 9.5E-29 T 06-07-2017 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00387 870 983 1.3E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF00512 His Kinase A (phospho-acceptor) domain 759 821 1.5E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55785 180 307 1.03E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF01590 GAF domain 344 474 7.1E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00065 338 486 1.2E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 191 314 4.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 619 736 6.1E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF13188 PAS domain 195 264 2.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF47384 742 824 1.53E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Gene3D G3DSA:3.30.565.10 825 987 2.3E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF08447 PAS fold 519 602 1.1E-12 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF08447 PAS fold 645 715 4.1E-13 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00091 490 561 120.0 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00091 194 266 7.5 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00091 621 688 1.4E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF00072 Response regulator receiver domain 1008 1121 1.7E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 870 983 9.2E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SUPERFAMILY SSF55781 37 184 9.81E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 PRINTS PR00344 Bacterial sensor protein C-terminal signature 967 980 3.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 PRINTS PR00344 Bacterial sensor protein C-terminal signature 942 960 3.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 PRINTS PR00344 Bacterial sensor protein C-terminal signature 925 935 3.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 PRINTS PR00344 Bacterial sensor protein C-terminal signature 907 921 3.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08010 196613567feeb2b133e3768cfa595dd8 1132 SMART SM00448 1006 1121 2.9E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16995 78a4b2aa860b8293b878d58d76552aaa 322 Pfam PF00535 Glycosyl transferase family 2 8 145 5.3E-25 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS16995 78a4b2aa860b8293b878d58d76552aaa 322 SUPERFAMILY SSF53448 5 270 4.03E-37 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS16995 78a4b2aa860b8293b878d58d76552aaa 322 Gene3D G3DSA:3.90.550.10 6 231 1.7E-34 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 SUPERFAMILY SSF55681 3 319 4.78E-60 T 06-07-2017 APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 15 368 34.332 T 06-07-2017 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 Pfam PF13393 Histidyl-tRNA synthetase 8 313 1.9E-74 T 06-07-2017 APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 PIRSF PIRSF001549 1 397 8.3E-82 T 06-07-2017 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 10 317 2.5E-90 T 06-07-2017 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 APT55_RS02025 257db8600bf625648ac0ac99a3048a77 401 Gene3D G3DSA:3.30.930.10 17 313 1.2E-69 T 06-07-2017 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 Pfam PF03309 Type III pantothenate kinase 8 208 4.9E-38 T 06-07-2017 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 8 253 1.0E-42 T 06-07-2017 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 Hamap MF_01274 Type III pantothenate kinase [coaX]. 7 258 19.491 T 06-07-2017 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 Gene3D G3DSA:3.30.420.40 105 257 2.8E-39 T 06-07-2017 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 SUPERFAMILY SSF53067 127 255 5.9E-30 T 06-07-2017 APT55_RS26185 5a1657c3492a406e1ffcf5021120a7d9 260 SUPERFAMILY SSF53067 8 124 7.12E-8 T 06-07-2017 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SUPERFAMILY SSF158472 287 334 2.35E-9 T 06-07-2017 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 Gene3D G3DSA:1.10.287.130 396 495 2.5E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SUPERFAMILY SSF55874 486 668 6.16E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 Pfam PF00672 HAMP domain 266 332 5.2E-14 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 664 1.7E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 Gene3D G3DSA:3.30.565.10 497 669 1.8E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SMART SM00387 544 667 3.1E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 Pfam PF00512 His Kinase A (phospho-acceptor) domain 402 498 4.8E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 609 2.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 664 2.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 613 623 2.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 2.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SUPERFAMILY SSF47384 467 497 3.34E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SUPERFAMILY SSF47384 394 437 3.34E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06145 3c43a2d72a1c368a687c1de7a306cc70 670 SMART SM00304 285 337 1.5E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS00970 872c7c06c1b662f902f1907c3325c8d7 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 454 6.3E-196 T 06-07-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT55_RS00970 872c7c06c1b662f902f1907c3325c8d7 462 Gene3D G3DSA:3.40.50.1220 280 458 3.7E-91 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS00970 872c7c06c1b662f902f1907c3325c8d7 462 PIRSF PIRSF000204 1 458 3.1E-217 T 06-07-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT55_RS00970 872c7c06c1b662f902f1907c3325c8d7 462 SUPERFAMILY SSF52467 283 457 1.25E-74 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 Gene3D G3DSA:3.40.50.1000 4 213 4.3E-40 T 06-07-2017 IPR023214 HAD-like domain APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 78 210 2.4E-9 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 Pfam PF13419 Haloacid dehalogenase-like hydrolase 79 209 2.7E-20 T 06-07-2017 IPR023214 HAD-like domain APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 TIGRFAM TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA 5 210 1.2E-71 T 06-07-2017 IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 SUPERFAMILY SSF56784 4 213 1.15E-41 T 06-07-2017 IPR023214 HAD-like domain APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 118 205 8.2E-14 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 124 137 2.6E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 2.6E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 200 213 2.6E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07860 c291695d0e9cd384ab239d48a49bc34f 213 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 170 2.6E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS21135 8f58657964c648e6a4399daeb4334ab9 142 Pfam PF04471 Restriction endonuclease 26 132 8.8E-6 T 06-07-2017 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 APT55_RS21135 8f58657964c648e6a4399daeb4334ab9 142 Gene3D G3DSA:3.40.1350.10 25 138 7.7E-6 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS16010 a9a5e435c5619a60de9269f38014bb74 261 SUPERFAMILY SSF56219 1 261 7.33E-79 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS16010 a9a5e435c5619a60de9269f38014bb74 261 Gene3D G3DSA:3.60.10.10 1 261 4.2E-85 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS16010 a9a5e435c5619a60de9269f38014bb74 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 254 2.4E-23 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS16010 a9a5e435c5619a60de9269f38014bb74 261 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 261 5.4E-92 T 06-07-2017 APT55_RS16010 a9a5e435c5619a60de9269f38014bb74 261 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 261 5.5E-84 T 06-07-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 191 3.0E-72 T 06-07-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 PRINTS PR00478 Phosphoribulokinase family signature 142 159 9.5E-33 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 PRINTS PR00478 Phosphoribulokinase family signature 160 183 9.5E-33 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 PRINTS PR00478 Phosphoribulokinase family signature 15 32 9.5E-33 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 PRINTS PR00478 Phosphoribulokinase family signature 107 125 9.5E-33 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 ProSitePatterns PS00567 Phosphoribulokinase signature. 142 155 - T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 SUPERFAMILY SSF52540 7 262 1.41E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20570 5f94c40ba2349147717313bb8531fcd5 336 Gene3D G3DSA:3.40.50.300 6 264 1.0E-102 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08205 f8b6195a6a948c9bb2d1caef9ff0e80c 113 Gene3D G3DSA:1.25.40.10 51 94 1.1E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 731 813 4.0E-5 T 06-07-2017 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF13676 TIR domain 4 108 2.1E-21 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 426 464 5.8E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 838 874 0.045 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 314 341 2.1E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 590 628 2.8E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 388 423 6.6E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 467 505 1.1E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 632 669 5.1E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 551 587 0.0078 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 345 379 0.019 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF00400 WD domain, G-beta repeat 508 546 2.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Gene3D G3DSA:3.40.50.10140 3 106 3.8E-17 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SUPERFAMILY SSF52200 3 126 3.01E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Gene3D G3DSA:2.130.10.10 511 715 6.9E-63 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Gene3D G3DSA:2.130.10.10 309 510 1.5E-61 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Pfam PF07676 WD40-like Beta Propeller Repeat 680 709 0.037 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SUPERFAMILY SSF50978 672 899 2.01E-54 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SUPERFAMILY SSF69322 307 467 2.62E-39 T 06-07-2017 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 Gene3D G3DSA:2.130.10.10 716 892 2.2E-50 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00255 1 131 4.1E-5 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 589 628 1.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 630 669 2.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 835 874 2.5E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 425 464 1.1E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 671 710 2.7E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 466 505 4.3E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 712 751 2.0E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 302 341 1.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 794 833 4.6E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 548 587 4.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 384 423 9.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 507 546 9.5E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 753 792 1.8E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SMART SM00320 343 382 2.2E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07730 7310492d4f5e257f27d33b27acbc866a 970 SUPERFAMILY SSF50978 433 751 3.11E-89 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 SMART SM00382 401 587 2.5E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 SUPERFAMILY SSF90123 46 340 6.41E-36 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 SUPERFAMILY SSF90123 517 532 6.41E-36 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 Gene3D G3DSA:3.40.50.300 375 607 5.7E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 Pfam PF00664 ABC transporter transmembrane region 56 327 8.1E-10 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 Gene3D G3DSA:1.20.1560.10 46 339 2.6E-25 T 06-07-2017 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 SUPERFAMILY SSF52540 366 611 1.07E-92 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 ProSitePatterns PS00211 ABC transporters family signature. 513 527 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS02750 908415a4cffb61837f5f7289e0544938 628 Pfam PF00005 ABC transporter 393 541 2.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11510 81000408910bff3d6a40e96771f3a88b 143 Gene3D G3DSA:3.40.50.620 1 96 9.4E-6 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS11510 81000408910bff3d6a40e96771f3a88b 143 SUPERFAMILY SSF52402 1 107 1.0E-10 T 06-07-2017 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 1 267 58.273 T 06-07-2017 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 Gene3D G3DSA:3.40.50.300 2 267 3.6E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 SUPERFAMILY SSF52540 3 268 1.82E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 2 267 3.7E-146 T 06-07-2017 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 PRINTS PR00091 Nitrogenase component II signature 121 136 1.9E-32 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 PRINTS PR00091 Nitrogenase component II signature 28 43 1.9E-32 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 PRINTS PR00091 Nitrogenase component II signature 6 19 1.9E-32 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 PRINTS PR00091 Nitrogenase component II signature 83 97 1.9E-32 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 PIRSF PIRSF000363 1 273 3.9E-102 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 ProSitePatterns PS00746 NifH/frxC family signature 1. 85 97 - T 06-07-2017 IPR030655 NifH/chlL conserved site APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 2 269 2.6E-109 T 06-07-2017 APT55_RS03285 a73f4c489fe2e6f271ab03e8d5aae658 286 ProSitePatterns PS00692 NifH/frxC family signature 2. 122 135 - T 06-07-2017 IPR030655 NifH/chlL conserved site APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SMART SM01080 30 292 9.2E-53 T 06-07-2017 IPR007890 CHASE2 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Pfam PF00512 His Kinase A (phospho-acceptor) domain 546 604 7.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Pfam PF05226 CHASE2 domain 19 286 1.2E-48 T 06-07-2017 IPR007890 CHASE2 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Gene3D G3DSA:3.30.450.20 413 543 2.0E-6 T 06-07-2017 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 648 757 3.8E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 736 1.4E-5 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 742 755 1.4E-5 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 699 1.4E-5 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SMART SM00388 539 607 1.0E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 PIRSF PIRSF037347 7 759 3.1E-70 T 06-07-2017 IPR017181 Signal transduction histidine kinase, CHASE2/PAS sensor domain-containing, predicted APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SUPERFAMILY SSF55874 607 754 1.57E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SUPERFAMILY SSF47384 526 604 7.06E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SUPERFAMILY SSF55785 422 520 2.47E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Gene3D G3DSA:1.10.287.130 544 603 1.2E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 SMART SM00387 648 758 1.7E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05430 ea96250edc4178d5734a7e37b646b2dd 759 Gene3D G3DSA:3.30.565.10 607 753 1.3E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 SUPERFAMILY SSF117892 48 181 1.09E-39 T 06-07-2017 IPR001107 Band 7 domain APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 Pfam PF01145 SPFH domain / Band 7 family 24 190 7.4E-34 T 06-07-2017 IPR001107 Band 7 domain APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 71 92 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 24 46 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 150 168 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 106 123 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 126 149 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 169 190 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 PRINTS PR00721 Stomatin signature 194 217 8.6E-59 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS22940 c501c97050635203c8fdd32cfddcbd63 273 SMART SM00244 17 174 1.5E-56 T 06-07-2017 IPR001107 Band 7 domain APT55_RS21690 9ecb94f9b7e041d3b234f838a8395f53 472 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 9 472 38.99 T 06-07-2017 IPR003846 Uncharacterised protein family UPF0061 APT55_RS21690 9ecb94f9b7e041d3b234f838a8395f53 472 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 8 470 2.0E-206 T 06-07-2017 IPR003846 Uncharacterised protein family UPF0061 APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 PIRSF PIRSF015617 5 203 2.6E-74 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 31 203 1.6E-62 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 SUPERFAMILY SSF52540 12 203 1.65E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 30 203 2.7E-78 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 25 1.3E-9 T 06-07-2017 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS19125 d5cd2e99a7db0c7c441cc75b2e402215 203 Gene3D G3DSA:3.40.50.300 7 203 2.8E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 SUPERFAMILY SSF47757 13 78 8.37E-11 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 Pfam PF03705 CheR methyltransferase, all-alpha domain 22 69 4.3E-11 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 38 51 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 75 87 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 236 259 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 115 135 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 217 231 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 PRINTS PR00996 Glutamate methyltransferase family signature 151 167 3.4E-31 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 Gene3D G3DSA:1.10.155.10 12 79 1.2E-12 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 Pfam PF01739 CheR methyltransferase, SAM binding domain 82 264 2.3E-46 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 SUPERFAMILY SSF53335 82 263 2.54E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 SMART SM00138 16 279 3.4E-60 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS05060 cf686ce1d7866501c4010bc8dd7a8b89 296 Gene3D G3DSA:3.40.50.150 81 277 1.6E-53 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 Pfam PF13545 Crp-like helix-turn-helix domain 160 232 3.5E-15 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 SMART SM00419 176 225 1.9E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 SUPERFAMILY SSF51206 17 151 6.15E-35 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 Gene3D G3DSA:2.60.120.10 14 151 7.2E-31 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 183 199 2.0E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 199 214 2.0E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 SMART SM00100 22 140 3.1E-26 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 Gene3D G3DSA:1.10.10.10 156 233 8.8E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 SUPERFAMILY SSF46785 157 233 4.28E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04865 6c1fbf6b10f13a2424d00c9e47d40473 234 Pfam PF00027 Cyclic nucleotide-binding domain 41 126 7.9E-20 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS09500 5fcdff1811c1c0cbe42657eb9a08ff17 353 Pfam PF00672 HAMP domain 223 296 1.6E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS09500 5fcdff1811c1c0cbe42657eb9a08ff17 353 SUPERFAMILY SSF158472 241 296 4.71E-5 T 06-07-2017 APT55_RS09500 5fcdff1811c1c0cbe42657eb9a08ff17 353 Pfam PF11845 Protein of unknown function (DUF3365) 20 205 2.4E-40 T 06-07-2017 IPR021796 Protein of unknown function DUF3365 APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 SUPERFAMILY SSF48208 179 237 1.99E-83 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 SUPERFAMILY SSF48208 264 652 1.99E-83 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 TIGRFAM TIGR01561 gde_arch: putative glycogen debranching enzyme, archaeal type 20 590 1.2E-132 T 06-07-2017 IPR006451 Glycogen debranching enzyme, archaeal type APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 Gene3D G3DSA:1.50.10.10 312 655 1.6E-11 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 Pfam PF12439 Glycogen debranching enzyme N terminal 19 238 2.7E-77 T 06-07-2017 IPR024742 Glycogen debranching enzyme, bacterial and archaeal type, N-terminal APT55_RS21755 6a282bf298fc93225e037be821cccf6c 657 Pfam PF06202 Amylo-alpha-1,6-glucosidase 290 649 1.0E-133 T 06-07-2017 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS25005 ad8544ae30ec26ea74c57bc9c88d6797 268 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS25005 ad8544ae30ec26ea74c57bc9c88d6797 268 Gene3D G3DSA:3.40.50.300 4 235 3.0E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25005 ad8544ae30ec26ea74c57bc9c88d6797 268 SUPERFAMILY SSF52540 4 232 5.43E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25005 ad8544ae30ec26ea74c57bc9c88d6797 268 SMART SM00382 30 219 6.9E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25005 ad8544ae30ec26ea74c57bc9c88d6797 268 Pfam PF00005 ABC transporter 22 170 1.3E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS09160 c326f08729aec2dc224512352797017c 131 SUPERFAMILY SSF53137 16 131 6.15E-49 T 06-07-2017 APT55_RS09160 c326f08729aec2dc224512352797017c 131 Gene3D G3DSA:3.30.420.80 11 131 4.8E-55 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT55_RS09160 c326f08729aec2dc224512352797017c 131 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 12 128 2.0E-57 T 06-07-2017 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09160 c326f08729aec2dc224512352797017c 131 Pfam PF00411 Ribosomal protein S11 21 130 7.4E-50 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT55_RS09160 c326f08729aec2dc224512352797017c 131 PIRSF PIRSF002131 1 131 9.5E-54 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT55_RS09160 c326f08729aec2dc224512352797017c 131 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 131 34.316 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT55_RS09160 c326f08729aec2dc224512352797017c 131 ProSitePatterns PS00054 Ribosomal protein S11 signature. 99 121 - T 06-07-2017 IPR018102 Ribosomal S11, conserved site APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 Gene3D G3DSA:3.30.2110.10 3 167 3.7E-36 T 06-07-2017 APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 PIRSF PIRSF026782 1 353 7.4E-107 T 06-07-2017 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 10 347 1.8E-106 T 06-07-2017 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 Pfam PF01888 CbiD 2 250 5.4E-74 T 06-07-2017 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 SUPERFAMILY SSF111342 1 268 1.57E-69 T 06-07-2017 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS00285 724eccad9f41a0a862f2897e2d63d4a0 359 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 1 346 25.824 T 06-07-2017 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 SUPERFAMILY SSF48452 45 164 1.04E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 SMART SM00028 53 86 0.46 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 SMART SM00028 125 158 2.5E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 SMART SM00028 91 124 4.6E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 Pfam PF13181 Tetratricopeptide repeat 56 83 0.0031 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 Gene3D G3DSA:1.25.40.10 31 164 2.6E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17395 072d5af25a86970d6e3228b001c6cb88 176 Pfam PF13414 TPR repeat 100 138 3.0E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Gene3D G3DSA:1.25.40.10 132 203 3.6E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF12770 CHAT domain 686 982 1.4E-47 T 06-07-2017 IPR024983 CHAT domain APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SUPERFAMILY SSF48452 280 468 1.78E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Gene3D G3DSA:1.25.40.10 204 468 4.9E-63 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF00515 Tetratricopeptide repeat 48 79 2.9E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF00515 Tetratricopeptide repeat 152 182 1.3E-6 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SUPERFAMILY SSF48452 19 320 7.4E-66 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Gene3D G3DSA:1.25.40.10 16 131 1.2E-32 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF13414 TPR repeat 190 231 7.3E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF13414 TPR repeat 258 299 1.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF13414 TPR repeat 88 129 1.3E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 Pfam PF13414 TPR repeat 326 366 2.8E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 115 148 4.6E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 251 284 9.1E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 149 182 3.2E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 183 216 1.5E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 319 352 2.6E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 217 250 1.5E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 285 318 1.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 81 114 5.1E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 353 386 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 47 80 2.6E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09095 3a57e6685e111537762fc21862adb668 988 SMART SM00028 13 46 17.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05870 28f8f8ff361e2a61d3b8f909afbc4f42 325 Pfam PF01040 UbiA prenyltransferase family 36 286 1.0E-71 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 APT55_RS05870 28f8f8ff361e2a61d3b8f909afbc4f42 325 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 22 301 1.1E-108 T 06-07-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 APT55_RS05870 28f8f8ff361e2a61d3b8f909afbc4f42 325 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 20 303 20.341 T 06-07-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 APT55_RS05870 28f8f8ff361e2a61d3b8f909afbc4f42 325 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 75 97 - T 06-07-2017 IPR030470 UbiA prenyltransferase conserved site APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF13432 Tetratricopeptide repeat 395 455 3.3E-7 T 06-07-2017 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF13432 Tetratricopeptide repeat 44 100 1.1E-4 T 06-07-2017 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF13432 Tetratricopeptide repeat 328 388 5.1E-8 T 06-07-2017 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SUPERFAMILY SSF48452 323 551 8.72E-39 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF00515 Tetratricopeptide repeat 143 174 6.6E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF14559 Tetratricopeptide repeat 469 529 1.0E-8 T 06-07-2017 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Gene3D G3DSA:1.25.40.10 428 536 3.1E-28 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 215 248 3.6E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 142 175 1.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 35 68 0.19 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 390 423 2.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 176 209 300.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 283 316 140.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 322 355 0.027 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 492 525 0.016 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 103 136 70.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 356 389 3.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 458 491 1.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 424 457 0.015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 69 102 9.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SMART SM00028 249 282 0.02 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SUPERFAMILY SSF48452 27 205 5.42E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Gene3D G3DSA:1.25.40.10 195 312 3.1E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF13181 Tetratricopeptide repeat 251 281 0.11 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Pfam PF13181 Tetratricopeptide repeat 217 248 0.0013 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Gene3D G3DSA:1.25.40.10 27 194 5.9E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 Gene3D G3DSA:1.25.40.10 322 427 7.4E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09530 2fa969880a9f4522aadc8db80605f4bc 571 SUPERFAMILY SSF48452 143 313 5.5E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 322 1.9E-119 T 06-07-2017 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 217 320 1.3E-7 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 Gene3D G3DSA:3.40.50.720 1 186 1.0E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 SUPERFAMILY SSF51735 1 160 5.02E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 154 1.2E-40 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 SUPERFAMILY SSF48179 183 320 2.86E-38 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 Gene3D G3DSA:1.10.1040.10 187 321 1.6E-33 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 SMART SM01350 185 320 1.0E-4 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 7.3E-17 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 174 202 7.3E-17 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS28220 2e607633606ecb1373b1d29f5efa2cca 329 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 258 285 7.3E-17 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 SUPERFAMILY SSF55874 304 453 3.7E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 SUPERFAMILY SSF47384 233 278 1.67E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 Gene3D G3DSA:3.30.565.10 305 454 2.1E-13 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 277 1.7E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 SMART SM00388 230 296 6.6E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06625 e6b48dbd845d3430bf539924facc2283 464 Gene3D G3DSA:1.10.287.130 232 278 5.1E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11045 1bd39dd725ffaa7d7e25a9d9255fd614 393 SMART SM00933 81 355 1.4E-59 T 06-07-2017 IPR018977 NurA domain APT55_RS11045 1bd39dd725ffaa7d7e25a9d9255fd614 393 Pfam PF09376 NurA domain 81 355 1.1E-38 T 06-07-2017 IPR018977 NurA domain APT55_RS10020 33457c3390d71b751342bd4f0924f44c 230 SUPERFAMILY SSF50341 80 226 8.11E-26 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10020 33457c3390d71b751342bd4f0924f44c 230 SMART SM00260 76 222 1.2E-5 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10020 33457c3390d71b751342bd4f0924f44c 230 Pfam PF01584 CheW-like domain 84 222 1.6E-20 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02270 f66a12540e123b989fc65dfa6c43fcda 195 SUPERFAMILY SSF81342 26 178 1.09E-15 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS02270 f66a12540e123b989fc65dfa6c43fcda 195 Pfam PF01292 Prokaryotic cytochrome b561 25 175 2.5E-20 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT55_RS23820 899fd459f6b13e3b6fc5cd1819a0aece 257 Pfam PF01061 ABC-2 type transporter 23 210 1.7E-6 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 ProSitePatterns PS01277 Ribonuclease PH signature. 117 129 - T 06-07-2017 IPR018336 Ribonuclease PH, conserved site APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 Pfam PF01138 3' exoribonuclease family, domain 1 13 141 1.9E-17 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 Gene3D G3DSA:3.30.230.70 13 237 1.5E-28 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 Hamap MF_00564 Ribonuclease PH [rph]. 4 238 44.132 T 06-07-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 Pfam PF03725 3' exoribonuclease family, domain 2 158 225 3.6E-8 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 5 237 1.6E-108 T 06-07-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 SUPERFAMILY SSF54211 4 181 2.02E-40 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS19165 2e2d7ca58cfee1b00ee61b5ae876b762 243 SUPERFAMILY SSF55666 154 237 7.46E-23 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS22070 c266a75c12197dba104b212cfc3ada21 848 Pfam PF13569 Domain of unknown function (DUF4132) 597 757 2.8E-33 T 06-07-2017 IPR025406 Domain of unknown function DUF4132 APT55_RS16575 03a8729df70afe95a0a76cb15b7ced0e 215 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 194 1.3E-33 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 APT55_RS16575 03a8729df70afe95a0a76cb15b7ced0e 215 SUPERFAMILY SSF88697 9 194 2.14E-50 T 06-07-2017 IPR015947 PUA-like domain APT55_RS16575 03a8729df70afe95a0a76cb15b7ced0e 215 SMART SM00464 9 195 4.7E-47 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 APT55_RS23080 a70d8b1bcdb9dfb47815d62895687bc7 189 SUPERFAMILY SSF55729 11 162 3.6E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS23080 a70d8b1bcdb9dfb47815d62895687bc7 189 Pfam PF00583 Acetyltransferase (GNAT) family 76 157 2.7E-14 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS23080 a70d8b1bcdb9dfb47815d62895687bc7 189 Gene3D G3DSA:3.40.630.30 9 162 1.1E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 337 376 1.4E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 582 621 6.5E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 623 662 7.4E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 501 539 0.0093 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 296 335 2.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 746 785 1.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 419 458 8.9E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 460 499 1.5E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 378 417 1.6E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 664 703 3.0E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 705 744 1.8E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 787 826 1.0E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 541 580 1.4E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00320 828 869 2.6E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Gene3D G3DSA:3.40.50.10140 3 125 3.8E-17 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 813 827 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 772 786 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 363 377 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 PRINTS PR00320 G protein beta WD-40 repeat signature 731 745 1.7E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 PRINTS PR00320 G protein beta WD-40 repeat signature 813 827 1.7E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 PRINTS PR00320 G protein beta WD-40 repeat signature 690 704 1.7E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Gene3D G3DSA:2.120.10.30 653 678 5.1E-10 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SUPERFAMILY SSF50978 295 580 5.5E-90 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF07676 WD40-like Beta Propeller Repeat 517 532 0.089 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 690 704 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SUPERFAMILY SSF50978 587 871 1.88E-92 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 665 703 7.9E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 420 458 6.5E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 706 744 3.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 379 417 2.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 788 826 1.5E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 624 662 2.5E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 338 376 7.1E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 461 499 8.5E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 303 335 4.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 747 785 7.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 829 869 0.0022 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 583 621 3.2E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF00400 WD domain, G-beta repeat 542 580 2.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Pfam PF13676 TIR domain 4 93 3.7E-22 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Gene3D G3DSA:2.130.10.10 534 652 4.2E-44 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 856 870 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SMART SM00255 1 129 2.1E-5 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 731 745 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 SUPERFAMILY SSF52200 2 127 1.24E-25 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Gene3D G3DSA:2.130.10.10 299 533 6.7E-90 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS22125 bbfd11c18326c9d9046c2815479e437a 929 Gene3D G3DSA:2.130.10.10 679 871 1.4E-74 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS03090 71712716da044ff7954f1afb596a1849 323 SMART SM00450 186 314 2.5E-23 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 SMART SM00450 46 163 6.5E-17 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 SUPERFAMILY SSF52821 181 318 7.2E-31 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 ProSitePatterns PS00683 Rhodanese C-terminal signature. 298 308 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 APT55_RS03090 71712716da044ff7954f1afb596a1849 323 Gene3D G3DSA:3.40.250.10 181 321 4.3E-33 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 Pfam PF00581 Rhodanese-like domain 191 309 4.1E-15 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 Pfam PF00581 Rhodanese-like domain 47 160 1.3E-16 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 SUPERFAMILY SSF52821 42 182 1.11E-27 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03090 71712716da044ff7954f1afb596a1849 323 Gene3D G3DSA:3.40.250.10 44 178 8.7E-28 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SUPERFAMILY SSF55874 204 371 1.18E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 371 1.6E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Pfam PF00512 His Kinase A (phospho-acceptor) domain 148 215 1.6E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Gene3D G3DSA:1.10.287.130 141 209 1.1E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Pfam PF00072 Response regulator receiver domain 18 129 1.8E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SUPERFAMILY SSF52172 17 145 3.27E-42 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SMART SM00448 16 128 1.4E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SMART SM00388 147 215 2.9E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Gene3D G3DSA:3.30.565.10 217 371 4.8E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SMART SM00387 262 372 3.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 Gene3D G3DSA:3.40.50.2300 17 140 1.7E-43 T 06-07-2017 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 330 9.3E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 370 9.3E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 351 9.3E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 316 9.3E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14950 7b9883bf5ef82e26c19526f0d9ad819a 372 SUPERFAMILY SSF47384 133 216 4.9E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15205 703338e8db4a7b20b214342bf92913a9 166 Pfam PF00583 Acetyltransferase (GNAT) family 53 133 2.3E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS15205 703338e8db4a7b20b214342bf92913a9 166 SUPERFAMILY SSF55729 1 161 1.42E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS15205 703338e8db4a7b20b214342bf92913a9 166 Gene3D G3DSA:3.40.630.30 1 161 3.6E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF13745 HxxPF-repeated domain 366 456 1.1E-37 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Gene3D G3DSA:2.30.38.10 829 910 1.1E-27 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF13193 AMP-binding enzyme C-terminal domain 928 1003 1.2E-12 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF52777 1299 1551 6.78E-47 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Gene3D G3DSA:3.30.300.30 915 1035 1.4E-41 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF47336 1023 1095 1.02E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Gene3D G3DSA:3.40.50.980 508 662 1.0E-59 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Gene3D G3DSA:3.40.50.980 663 828 5.0E-37 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SMART SM01294 1032 1095 0.005 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SMART SM00823 Phosphopantetheine attachment site 1031 1098 8.3E-4 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF00668 Condensation domain 42 344 2.6E-72 T 06-07-2017 IPR001242 Condensation domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF00668 Condensation domain 1113 1415 1.6E-68 T 06-07-2017 IPR001242 Condensation domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF52777 48 225 8.34E-51 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF00550 Phosphopantetheine attachment site 1033 1093 1.1E-14 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Gene3D G3DSA:1.10.1200.10 1036 1096 1.0E-26 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1055 1070 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF56801 467 1044 3.53E-160 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1422 1574 1.2E-48 T 06-07-2017 IPR010060 Non-ribosomal peptide synthase APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 536 944 9.8E-128 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 Pfam PF00501 AMP-binding enzyme 515 920 6.9E-98 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF52777 1109 1312 1.45E-38 T 06-07-2017 APT55_RS30735 8a475414440c622065ba96b0822fbad4 1588 SUPERFAMILY SSF52777 233 492 2.67E-69 T 06-07-2017 APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 Gene3D G3DSA:3.40.50.300 20 241 6.0E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 Pfam PF00005 ABC transporter 49 190 2.2E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 SUPERFAMILY SSF52540 48 261 8.11E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 49 274 4.3E-99 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS07070 c238de2c41bb6218bab5125b167c836e 294 SMART SM00382 58 240 8.5E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03945 124f0c514e7317232f061f1f42dd98e1 356 Pfam PF00072 Response regulator receiver domain 240 351 2.0E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03945 124f0c514e7317232f061f1f42dd98e1 356 Gene3D G3DSA:3.40.50.2300 237 355 1.4E-31 T 06-07-2017 APT55_RS03945 124f0c514e7317232f061f1f42dd98e1 356 SMART SM00448 238 351 2.2E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03945 124f0c514e7317232f061f1f42dd98e1 356 SUPERFAMILY SSF52172 238 356 2.42E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 SUPERFAMILY SSF50447 215 311 3.33E-31 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 SUPERFAMILY SSF52540 9 236 6.13E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 409 61.024 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Gene3D G3DSA:3.40.50.300 4 221 9.4E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Pfam PF03143 Elongation factor Tu C-terminal domain 308 407 2.2E-35 T 06-07-2017 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 SUPERFAMILY SSF50465 308 408 3.5E-34 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Gene3D G3DSA:2.40.30.10 222 308 2.4E-38 T 06-07-2017 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Gene3D G3DSA:2.40.30.10 310 408 5.3E-44 T 06-07-2017 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 409 6.7E-229 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Pfam PF03144 Elongation factor Tu domain 2 235 303 1.9E-18 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.8E-15 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 Pfam PF00009 Elongation factor Tu GTP binding domain 10 211 9.5E-59 T 06-07-2017 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.2E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.2E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.2E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.2E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16595 df97b67c23fe4ba1c34f1367a26644fa 409 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.2E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS11005 a60b3bb37528ce311c6658b95f115b9e 202 Gene3D G3DSA:1.10.340.30 40 147 2.1E-26 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS11005 a60b3bb37528ce311c6658b95f115b9e 202 SUPERFAMILY SSF48150 34 198 6.11E-39 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS11005 a60b3bb37528ce311c6658b95f115b9e 202 SMART SM00478 46 200 2.4E-12 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS11005 a60b3bb37528ce311c6658b95f115b9e 202 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 43 181 1.7E-18 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS11005 a60b3bb37528ce311c6658b95f115b9e 202 Gene3D G3DSA:1.10.1670.10 149 200 4.4E-13 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT55_RS18145 06abcbac62e709279e59928e7b97c76d 117 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 2 104 24.26 T 06-07-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18145 06abcbac62e709279e59928e7b97c76d 117 SUPERFAMILY SSF141091 3 103 1.06E-32 T 06-07-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18145 06abcbac62e709279e59928e7b97c76d 117 Pfam PF00829 Ribosomal prokaryotic L21 protein 3 102 5.2E-33 T 06-07-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18145 06abcbac62e709279e59928e7b97c76d 117 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 06-07-2017 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS18145 06abcbac62e709279e59928e7b97c76d 117 TIGRFAM TIGR00061 L21: ribosomal protein bL21 3 102 7.6E-34 T 06-07-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 PRINTS PR00502 NUDIX hydrolase family signature 287 302 4.1E-7 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 PRINTS PR00502 NUDIX hydrolase family signature 273 287 4.1E-7 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 TIGRFAM TIGR00586 mutt: mutator mutT protein 244 367 5.7E-37 T 06-07-2017 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Gene3D G3DSA:1.10.1670.10 139 237 1.8E-36 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 54 174 8.9E-19 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 SMART SM00525 205 225 0.0018 T 06-07-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 206 222 6.5E-4 T 06-07-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 206 222 - T 06-07-2017 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Gene3D G3DSA:3.90.79.10 245 368 2.0E-39 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 26 280 5.1E-99 T 06-07-2017 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 SMART SM00478 58 204 6.1E-34 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Pfam PF14815 NUDIX domain 249 365 1.4E-24 T 06-07-2017 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 Gene3D G3DSA:1.10.340.30 41 138 1.9E-40 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 SUPERFAMILY SSF48150 25 235 6.12E-70 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS25720 a78df6a3013e362475da8be135b76c0c 374 SUPERFAMILY SSF55811 234 367 7.72E-43 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Pfam PF00679 Elongation factor G C-terminus 404 490 9.0E-22 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 8.6E-49 T 06-07-2017 IPR013842 GTP-binding protein LepA, C-terminal APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 178 5.5E-20 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Gene3D G3DSA:3.30.70.870 297 374 1.5E-27 T 06-07-2017 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 SUPERFAMILY SSF54980 297 375 6.47E-19 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 SUPERFAMILY SSF52540 5 232 2.45E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Gene3D G3DSA:3.40.50.300 7 199 1.2E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 SUPERFAMILY SSF54980 404 499 2.25E-24 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 PRINTS PR00315 GTP-binding elongation factor signature 79 89 2.0E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 PRINTS PR00315 GTP-binding elongation factor signature 11 24 2.0E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 PRINTS PR00315 GTP-binding elongation factor signature 54 62 2.0E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 PRINTS PR00315 GTP-binding elongation factor signature 95 106 2.0E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Pfam PF03144 Elongation factor Tu domain 2 210 280 1.3E-11 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 SMART SM00838 403 489 0.0036 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Gene3D G3DSA:2.40.30.10 200 293 4.5E-26 T 06-07-2017 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Gene3D G3DSA:3.30.70.240 406 495 6.9E-21 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Pfam PF00009 Elongation factor Tu GTP binding domain 8 186 5.2E-55 T 06-07-2017 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Hamap MF_03138 Translation factor GUF1 homolog, organellar chromatophore [lepA]. 1 602 66.835 T 06-07-2017 IPR027518 Translation factor GUF1 homologue, organellar chromatophore APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 TIGRFAM TIGR01393 lepA: elongation factor 4 8 599 2.9E-303 T 06-07-2017 IPR006297 Elongation factor 4 GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 Hamap MF_00071 Elongation factor 4 [lepA]. 1 604 305.184 T 06-07-2017 IPR006297 Elongation factor 4 GO:0005525 APT55_RS15515 4236666938382c531fc898a1fee7b8f5 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site APT55_RS22610 097c20c354d360f2abeff44d02262510 361 SUPERFAMILY SSF52402 232 353 4.26E-11 T 06-07-2017 APT55_RS22610 097c20c354d360f2abeff44d02262510 361 Gene3D G3DSA:3.40.50.620 231 352 2.5E-10 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS22610 097c20c354d360f2abeff44d02262510 361 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 6 215 2.2E-94 T 06-07-2017 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 APT55_RS22610 097c20c354d360f2abeff44d02262510 361 Gene3D G3DSA:3.40.50.300 6 214 3.7E-98 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 Pfam PF00119 ATP synthase A chain 37 236 1.7E-54 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 Hamap MF_01393 ATP synthase subunit a [atpB]. 16 243 14.638 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 PRINTS PR00123 ATP synthase A subunit signature 163 178 4.1E-19 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 PRINTS PR00123 ATP synthase A subunit signature 94 110 4.1E-19 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 PRINTS PR00123 ATP synthase A subunit signature 223 238 4.1E-19 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 PRINTS PR00123 ATP synthase A subunit signature 179 201 4.1E-19 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 Gene3D G3DSA:1.20.120.220 86 243 3.2E-45 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 239 8.9E-45 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 SUPERFAMILY SSF81336 86 236 5.23E-35 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 APT55_RS08620 439ef9aa9dad13fe593399a26296ce3e 249 ProSitePatterns PS00449 ATP synthase a subunit signature. 182 191 - T 06-07-2017 IPR023011 ATPase, F0 complex, subunit A, active site Reactome: R-HSA-163210 APT55_RS07380 65cf783dca70658c497993d6b2dcdf02 110 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 38 86 5.4E-11 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT55_RS07380 65cf783dca70658c497993d6b2dcdf02 110 TIGRFAM TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein 3 110 6.4E-55 T 06-07-2017 IPR026445 Alkylhydroperoxidase/carboxymuconolactone decarboxylase family APT55_RS07380 65cf783dca70658c497993d6b2dcdf02 110 SUPERFAMILY SSF69118 9 105 7.33E-25 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT55_RS07380 65cf783dca70658c497993d6b2dcdf02 110 Gene3D G3DSA:1.20.1290.10 11 103 7.0E-32 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT55_RS07380 65cf783dca70658c497993d6b2dcdf02 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 103 1.4E-18 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 06-07-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 9.2E-30 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 9.2E-30 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 9.2E-30 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 9.2E-30 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 9.2E-30 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 PIRSF PIRSF000149 1 336 3.5E-124 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 Gene3D G3DSA:3.40.50.720 3 161 1.2E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 2.5E-117 T 06-07-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 SMART SM00846 3 153 1.7E-71 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 153 4.3E-51 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 Gene3D G3DSA:3.30.360.10 162 316 3.3E-67 T 06-07-2017 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 SUPERFAMILY SSF55347 153 315 2.17E-64 T 06-07-2017 APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 SUPERFAMILY SSF51735 1 183 5.86E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03550 5ead2fe7b70a52208291890d307debee 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 1.8E-60 T 06-07-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 120 130 9.0E-5 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 153 165 9.0E-5 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 131 142 9.0E-5 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 Gene3D G3DSA:1.10.10.10 3 68 1.3E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 Pfam PF00717 Peptidase S24-like 123 189 1.3E-10 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 Gene3D G3DSA:2.10.109.10 76 207 1.3E-28 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 TIGRFAM TIGR00498 lexA: repressor LexA 2 207 3.9E-41 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 SUPERFAMILY SSF51306 75 207 2.96E-24 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 SUPERFAMILY SSF46785 3 69 4.03E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10735 14711d816c11fa9a9c7a334dcaeafe70 210 Pfam PF01726 LexA DNA binding domain 1 62 6.5E-10 T 06-07-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APT55_RS17240 52e3f612432497232769e5fd4099670e 495 Gene3D G3DSA:2.60.40.10 393 439 3.7E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS17240 52e3f612432497232769e5fd4099670e 495 Pfam PF01345 Domain of unknown function DUF11 248 296 8.2E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17240 52e3f612432497232769e5fd4099670e 495 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 252 301 1.2E-12 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17240 52e3f612432497232769e5fd4099670e 495 SUPERFAMILY SSF117074 385 439 6.28E-7 T 06-07-2017 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SMART SM00304 355 407 2.4E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Pfam PF08448 PAS fold 446 550 1.4E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Pfam PF00512 His Kinase A (phospho-acceptor) domain 584 628 2.4E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SUPERFAMILY SSF47384 579 618 4.12E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Gene3D G3DSA:3.30.450.20 85 210 1.4E-16 T 06-07-2017 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Gene3D G3DSA:3.30.565.10 754 892 2.3E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 844 854 5.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 826 840 5.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 857 875 5.2E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Gene3D G3DSA:1.10.287.130 580 630 3.7E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SUPERFAMILY SSF158472 355 404 5.75E-7 T 06-07-2017 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 440 555 2.3E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SUPERFAMILY SSF55785 452 557 1.94E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 792 893 5.2E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Gene3D G3DSA:3.30.450.20 432 548 3.6E-17 T 06-07-2017 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Pfam PF02743 Cache domain 36 317 4.0E-16 T 06-07-2017 IPR033479 Double Cache domain 1 APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SMART SM00387 789 896 3.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 SUPERFAMILY SSF55874 746 892 2.75E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25655 87de02e706c145f0738c3a0121464a79 901 Pfam PF00672 HAMP domain 335 404 3.1E-14 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 200 225 - T 06-07-2017 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 26 167 1.3E-46 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 SMART SM01003 26 167 3.4E-68 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 PIRSF PIRSF000203 23 540 3.8E-247 T 06-07-2017 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 456 540 4.3E-36 T 06-07-2017 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 171 394 1.5E-76 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 Gene3D G3DSA:3.40.50.1770 218 392 3.8E-46 T 06-07-2017 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 SUPERFAMILY SSF52283 24 198 1.79E-52 T 06-07-2017 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 Gene3D G3DSA:3.40.50.1770 24 217 3.6E-70 T 06-07-2017 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 24 540 1.4E-246 T 06-07-2017 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 26 52 - T 06-07-2017 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 SMART SM01002 176 340 1.0E-88 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT55_RS00975 63205568d6eea497e577e7c36a490e1b 540 SUPERFAMILY SSF51735 167 346 3.83E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03075 7ca482d5f83b6912c7a06beff51cb65c 95 Gene3D G3DSA:3.30.70.260 25 82 7.4E-6 T 06-07-2017 APT55_RS03075 7ca482d5f83b6912c7a06beff51cb65c 95 SUPERFAMILY SSF55021 13 82 1.83E-7 T 06-07-2017 APT55_RS03075 7ca482d5f83b6912c7a06beff51cb65c 95 Pfam PF09383 NIL domain 15 82 4.3E-7 T 06-07-2017 IPR018449 NIL domain APT55_RS03075 7ca482d5f83b6912c7a06beff51cb65c 95 SMART SM00930 11 85 0.0067 T 06-07-2017 IPR018449 NIL domain APT55_RS11680 7464e2ccfae0b0e4ed0a49fca2a67672 77 Gene3D G3DSA:1.10.287.660 4 75 3.1E-30 T 06-07-2017 IPR029012 Helix hairpin bin domain APT55_RS11680 7464e2ccfae0b0e4ed0a49fca2a67672 77 Pfam PF05082 Rop-like 13 74 3.9E-29 T 06-07-2017 IPR007774 Putative nitrogen fixation protein APT55_RS11680 7464e2ccfae0b0e4ed0a49fca2a67672 77 PIRSF PIRSF037676 1 77 2.1E-27 T 06-07-2017 IPR007774 Putative nitrogen fixation protein APT55_RS02685 cd197217c2edbe89d6aaa9791132b988 163 TIGRFAM TIGR01338 phycocy_alpha: phycocyanin, alpha subunit 3 163 3.1E-86 T 06-07-2017 IPR006246 Phycocyanin, alpha subunit GO:0015979|GO:0030089 APT55_RS02685 cd197217c2edbe89d6aaa9791132b988 163 Pfam PF00502 Phycobilisome protein 9 162 2.2E-45 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS02685 cd197217c2edbe89d6aaa9791132b988 163 PIRSF PIRSF000081 2 163 2.2E-41 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS02685 cd197217c2edbe89d6aaa9791132b988 163 Gene3D G3DSA:1.10.490.20 3 163 3.0E-52 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS02685 cd197217c2edbe89d6aaa9791132b988 163 SUPERFAMILY SSF46458 3 163 2.44E-51 T 06-07-2017 IPR009050 Globin-like APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 474 6.6E-196 T 06-07-2017 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 Hamap MF_01498 DNA repair protein RadA [radA]. 21 478 43.185 T 06-07-2017 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 347 370 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 10 34 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 238 266 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 135 152 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 94 122 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 199 223 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 PRINTS PR01874 DNA repair protein radA signature 273 299 2.1E-86 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 Pfam PF13541 Subunit ChlI of Mg-chelatase 395 453 1.6E-6 T 06-07-2017 APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 SUPERFAMILY SSF52540 68 295 6.25E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 Pfam PF06745 KaiC 89 280 1.9E-15 T 06-07-2017 IPR014774 KaiC-like domain APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 Gene3D G3DSA:3.30.230.10 311 478 3.7E-28 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 SMART SM00382 102 269 2.9E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 Gene3D G3DSA:3.40.50.300 73 301 2.6E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 SUPERFAMILY SSF54211 280 294 4.17E-35 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS00025 f447bf472c2fb7e91137636e9355f286 498 SUPERFAMILY SSF54211 328 477 4.17E-35 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 459 478 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 268 292 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 499 518 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 95 115 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 180 199 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 572 593 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 PRINTS PR01439 Cellulose synthase subunit A signature 430 456 3.6E-31 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 Pfam PF00535 Glycosyl transferase family 2 174 349 3.4E-30 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 SUPERFAMILY SSF53448 170 457 2.04E-44 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 Pfam PF03552 Cellulose synthase 355 473 2.1E-9 T 06-07-2017 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 Gene3D G3DSA:3.90.550.10 172 407 2.3E-18 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 40 733 1.0E-211 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS00070 fb7ed3eaec5f2e9a388e911f2418709e 851 Pfam PF07238 PilZ domain 599 693 5.5E-10 T 06-07-2017 IPR009875 PilZ domain GO:0035438 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 SUPERFAMILY SSF54862 54 112 1.19E-11 T 06-07-2017 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 PRINTS PR00352 3Fe-4S ferredoxin signature 67 77 9.5E-5 T 06-07-2017 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 PRINTS PR00352 3Fe-4S ferredoxin signature 97 109 9.5E-5 T 06-07-2017 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 PRINTS PR00352 3Fe-4S ferredoxin signature 56 67 9.5E-5 T 06-07-2017 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 56 111 1.6E-15 T 06-07-2017 APT55_RS12525 ca9fd84609dc6a09b0544a8eb98a8ca9 159 Gene3D G3DSA:3.30.70.20 54 113 6.5E-19 T 06-07-2017 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 SUPERFAMILY SSF88659 111 174 1.12E-9 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 Pfam PF04542 Sigma-70 region 2 26 86 2.3E-8 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 Gene3D G3DSA:1.10.10.10 113 174 5.3E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 SUPERFAMILY SSF88946 14 97 1.33E-12 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 Gene3D G3DSA:1.25.40.10 328 407 8.1E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 SUPERFAMILY SSF48452 328 408 2.78E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 SUPERFAMILY SSF48452 33 59 2.78E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 Pfam PF08281 Sigma-70, region 4 121 172 1.9E-7 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28795 1bd9a343f42cc679d216da29b6166cd1 418 Gene3D G3DSA:1.10.1740.10 13 86 4.8E-11 T 06-07-2017 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 PRINTS PR00126 ATP synthase gamma subunit signature 168 185 1.1E-38 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 PRINTS PR00126 ATP synthase gamma subunit signature 262 281 1.1E-38 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 1.1E-38 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 PRINTS PR00126 ATP synthase gamma subunit signature 293 314 1.1E-38 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Gene3D G3DSA:1.10.287.80 230 263 2.7E-29 T 06-07-2017 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Gene3D G3DSA:1.10.287.80 19 60 2.7E-29 T 06-07-2017 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Gene3D G3DSA:3.40.1380.10 67 194 3.0E-43 T 06-07-2017 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 SUPERFAMILY SSF52943 3 200 1.57E-87 T 06-07-2017 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 SUPERFAMILY SSF52943 232 315 1.57E-87 T 06-07-2017 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 315 1.2E-116 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Pfam PF00231 ATP synthase 3 315 3.1E-91 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Gene3D G3DSA:1.10.287.80 264 310 3.0E-27 T 06-07-2017 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 301 314 - T 06-07-2017 IPR023632 ATPase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210 APT55_RS08590 dcd1a1225fdf43f0a87e7aac96dafe53 316 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 315 34.937 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Pfam PF00702 haloacid dehalogenase-like hydrolase 429 648 1.1E-46 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 743 1.9E-203 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF81653 236 332 4.58E-30 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 653 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 591 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 559 570 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 432 446 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 657 669 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 282 296 1.1E-28 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Gene3D G3DSA:3.40.50.1000 562 702 1.6E-56 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Gene3D G3DSA:3.40.50.1000 403 445 1.6E-56 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF55008 1 71 2.62E-20 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF56784 430 450 4.48E-61 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF56784 492 741 4.48E-61 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Gene3D G3DSA:2.70.150.10 162 333 9.6E-37 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 415 430 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 611 628 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 668 682 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 202 221 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 355 369 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 47 67 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 PRINTS PR00943 Copper-transporting ATPase signature 148 167 2.0E-18 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Gene3D G3DSA:3.30.70.100 1 71 1.7E-23 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 145 744 1.3E-197 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 434 440 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF81665 199 236 1.01E-14 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF81665 333 425 1.01E-14 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 SUPERFAMILY SSF81665 683 713 1.01E-14 T 06-07-2017 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 204 711 1.2E-93 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Gene3D G3DSA:3.40.1110.10 446 561 3.3E-21 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Pfam PF00122 E1-E2 ATPase 204 423 7.7E-72 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS13035 6d41f5e1cc9a80b74e14f1ec1c69ffb0 753 Pfam PF00403 Heavy-metal-associated domain 5 65 2.8E-14 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS10230 bc946a7a57415aea4b474cdd38ed6f0f 125 Pfam PF10184 Uncharacterized conserved protein (DUF2358) 2 107 2.5E-37 T 06-07-2017 IPR018790 Protein of unknown function DUF2358 APT55_RS10230 bc946a7a57415aea4b474cdd38ed6f0f 125 Gene3D G3DSA:3.10.450.50 18 112 1.1E-7 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS10230 bc946a7a57415aea4b474cdd38ed6f0f 125 SUPERFAMILY SSF54427 3 112 2.98E-22 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 27 430 3.0E-179 T 06-07-2017 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 SUPERFAMILY SSF51556 69 372 1.4E-97 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 SUPERFAMILY SSF51338 15 85 7.29E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 Gene3D G3DSA:2.30.40.10 27 74 6.7E-7 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 Gene3D G3DSA:3.20.20.140 75 371 3.9E-114 T 06-07-2017 APT55_RS03835 1cf77ba3e4721fe2a0a1feb552f74f4d 437 Pfam PF01979 Amidohydrolase family 67 431 8.6E-66 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS00490 3cecdcefe5618a97b5699afc44e95b04 374 Gene3D G3DSA:3.90.550.10 43 256 1.3E-9 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00490 3cecdcefe5618a97b5699afc44e95b04 374 SUPERFAMILY SSF53448 42 297 2.44E-22 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00490 3cecdcefe5618a97b5699afc44e95b04 374 Pfam PF13506 Glycosyl transferase family 21 99 266 6.9E-29 T 06-07-2017 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|Reactome: R-HSA-1660662 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SUPERFAMILY SSF55781 4 169 3.05E-25 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 670 759 4.4E-10 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Gene3D G3DSA:3.30.565.10 643 759 2.2E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Gene3D G3DSA:3.30.450.20 305 428 1.4E-19 T 06-07-2017 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF13426 PAS domain 340 429 3.0E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SUPERFAMILY SSF55785 428 549 2.09E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 440 556 9.8E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 186 315 2.7E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 317 438 1.9E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF01590 GAF domain 3 144 4.1E-14 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Gene3D G3DSA:3.30.450.40 4 152 2.7E-31 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF08448 PAS fold 449 552 1.2E-10 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SUPERFAMILY SSF55874 639 760 1.06E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00065 3 154 2.9E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF00989 PAS fold 191 304 9.7E-11 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Pfam PF07730 Histidine kinase 562 629 1.8E-17 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Gene3D G3DSA:3.30.450.20 177 304 1.0E-23 T 06-07-2017 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 Gene3D G3DSA:3.30.450.20 429 549 4.3E-22 T 06-07-2017 APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SUPERFAMILY SSF55785 175 306 2.74E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SUPERFAMILY SSF55785 306 429 1.19E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00387 668 761 2.6E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00086 515 551 120.0 T 06-07-2017 IPR001610 PAC motif APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00086 393 434 4.0E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00086 266 308 5.5E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00091 190 256 1.5E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00091 443 509 0.0093 T 06-07-2017 IPR000014 PAS domain APT55_RS28525 4b3e7112c48a364dfa9d73e786a4cbda 761 SMART SM00091 320 390 3.3E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 SUPERFAMILY SSF53474 5 279 3.82E-58 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 101 115 1.6E-8 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 59 70 1.6E-8 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 32 40 1.6E-8 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 Gene3D G3DSA:3.40.50.1820 8 279 2.3E-59 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 Pfam PF00561 alpha/beta hydrolase fold 208 268 7.8E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 Pfam PF00561 alpha/beta hydrolase fold 34 141 2.0E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.9E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 1.9E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 1.9E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14725 8df5ba81eea81bba2686326d654f393d 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 1.9E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS12800 ec56868877eb1914833c05a5f28871d3 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 145 2.8E-57 T 06-07-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 APT55_RS12800 ec56868877eb1914833c05a5f28871d3 146 Gene3D G3DSA:3.50.80.10 1 145 1.8E-60 T 06-07-2017 IPR023509 D-Tyr tRNAtyr deacylase-like domain APT55_RS12800 ec56868877eb1914833c05a5f28871d3 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.5E-56 T 06-07-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 APT55_RS12800 ec56868877eb1914833c05a5f28871d3 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 146 34.584 T 06-07-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 APT55_RS12800 ec56868877eb1914833c05a5f28871d3 146 SUPERFAMILY SSF69500 1 145 1.24E-54 T 06-07-2017 IPR023509 D-Tyr tRNAtyr deacylase-like domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SUPERFAMILY SSF55785 153 268 5.23E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Gene3D G3DSA:1.10.287.130 268 330 4.0E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 453 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 497 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 439 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 1.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SMART SM00387 388 500 1.3E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Pfam PF00072 Response regulator receiver domain 8 117 3.3E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SUPERFAMILY SSF47384 263 343 1.18E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 160 275 5.8E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Pfam PF00512 His Kinase A (phospho-acceptor) domain 276 343 2.6E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SUPERFAMILY SSF52172 3 170 1.57E-24 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SUPERFAMILY SSF55874 333 498 2.1E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SMART SM00091 163 229 1.4E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Pfam PF13426 PAS domain 174 269 4.6E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SMART SM00448 5 117 4.3E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 SMART SM00388 276 344 9.9E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Gene3D G3DSA:3.40.50.2300 4 145 3.0E-20 T 06-07-2017 APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Gene3D G3DSA:3.30.565.10 331 498 8.4E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 498 1.8E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05415 203f50030451a342a9409629ccf81fb0 501 Gene3D G3DSA:3.30.450.20 160 267 3.3E-17 T 06-07-2017 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 SUPERFAMILY SSF57783 5 100 8.5E-35 T 06-07-2017 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 SUPERFAMILY SSF56731 119 430 1.83E-100 T 06-07-2017 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 SMART SM00400 37 91 4.1E-34 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 TIGRFAM TIGR01391 dnaG: DNA primase 7 427 3.3E-145 T 06-07-2017 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Pfam PF10410 DnaB-helicase binding domain of primase 379 429 7.1E-8 T 06-07-2017 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 PIRSF PIRSF002811 4 583 1.1E-154 T 06-07-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Pfam PF13155 Toprim-like 268 359 1.5E-20 T 06-07-2017 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 SMART SM00493 265 338 4.2E-15 T 06-07-2017 IPR006171 Toprim domain APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Gene3D G3DSA:3.90.580.10 5 99 1.5E-36 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Pfam PF01807 CHC2 zinc finger 8 101 2.0E-39 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Hamap MF_00974 DNA primase [dnaG]. 5 558 28.019 T 06-07-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 258 1.8E-41 T 06-07-2017 IPR013264 DNA primase, catalytic core, N-terminal APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Gene3D G3DSA:3.40.1360.10 247 374 3.2E-43 T 06-07-2017 APT55_RS22450 c5183cc04e46d3d6209c076b8feb71d4 634 Gene3D G3DSA:3.90.980.10 118 246 2.4E-44 T 06-07-2017 IPR013264 DNA primase, catalytic core, N-terminal APT55_RS30900 18eb978261594646b23aa20518e90dde 720 Pfam PF07508 Recombinase 199 322 2.0E-10 T 06-07-2017 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 APT55_RS30900 18eb978261594646b23aa20518e90dde 720 SMART SM00857 24 176 1.5E-21 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS30900 18eb978261594646b23aa20518e90dde 720 Pfam PF00239 Resolvase, N terminal domain 24 175 1.6E-18 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS30900 18eb978261594646b23aa20518e90dde 720 Pfam PF13408 Recombinase zinc beta ribbon domain 339 396 3.7E-11 T 06-07-2017 IPR025827 Recombinase zinc beta ribbon domain APT55_RS30900 18eb978261594646b23aa20518e90dde 720 Gene3D G3DSA:3.40.50.1390 24 156 5.0E-10 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS30900 18eb978261594646b23aa20518e90dde 720 SUPERFAMILY SSF53041 24 175 1.7E-18 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 774 788 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 606 620 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 942 956 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 874 913 2.1E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 452 492 9.5E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 664 703 2.3E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 748 787 1.6E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 958 997 1.5E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 495 535 1.8E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 790 829 4.0E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 580 619 1.1E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 622 661 4.9E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 368 407 6.4E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 832 871 3.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 538 577 4.7E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 916 955 5.1E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 410 449 2.4E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SMART SM00320 706 745 1.1E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 PRINTS PR00320 G protein beta WD-40 repeat signature 564 578 2.2E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 PRINTS PR00320 G protein beta WD-40 repeat signature 394 408 2.2E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 PRINTS PR00320 G protein beta WD-40 repeat signature 816 830 2.2E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 436 450 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 816 830 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 454 492 7.8E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 917 955 3.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 540 577 1.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 791 829 4.5E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 959 993 5.0E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 581 619 9.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 374 407 2.4E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 707 745 4.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 875 913 1.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 412 449 1.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 497 535 7.8E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 833 871 3.3E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 623 661 7.1E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 749 787 1.9E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Pfam PF00400 WD domain, G-beta repeat 665 703 1.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SUPERFAMILY SSF50998 376 594 6.28E-70 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SUPERFAMILY SSF50978 752 1001 5.49E-90 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 858 872 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 690 704 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Gene3D G3DSA:2.130.10.10 800 1001 6.5E-78 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 900 914 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 732 746 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 564 578 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 394 408 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 SUPERFAMILY SSF50998 528 834 1.49E-98 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Gene3D G3DSA:2.130.10.10 367 600 6.2E-80 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS18940 084ff194bcf7a03eec8646ce4314c9b1 1135 Gene3D G3DSA:2.130.10.10 601 799 6.8E-78 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 SUPERFAMILY SSF55124 194 326 1.34E-17 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 90 146 1.2E-6 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 187 234 0.073 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 357 398 0.058 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 SUPERFAMILY SSF56014 90 234 5.5E-17 T 06-07-2017 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Gene3D G3DSA:3.30.413.10 90 232 8.4E-14 T 06-07-2017 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Gene3D G3DSA:3.30.413.10 331 398 8.4E-10 T 06-07-2017 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 8 388 1.5E-91 T 06-07-2017 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Gene3D G3DSA:3.90.480.10 19 86 4.5E-30 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Gene3D G3DSA:3.90.480.10 251 312 4.5E-30 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 258 312 4.0E-14 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 20 78 8.1E-11 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 SUPERFAMILY SSF56014 330 400 4.32E-14 T 06-07-2017 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 368 384 - T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS27115 99ed59ec11a2e04830e5604f7e7ce2cb 424 SUPERFAMILY SSF55124 6 83 9.32E-16 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS00350 16aecda46f24f5151ff4feebf3cdc17e 466 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 373 2.3E-28 T 06-07-2017 IPR004299 Membrane bound O-acyl transferase, MBOAT APT55_RS00350 16aecda46f24f5151ff4feebf3cdc17e 466 PIRSF PIRSF500217 1 466 2.6E-154 T 06-07-2017 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 APT55_RS00350 16aecda46f24f5151ff4feebf3cdc17e 466 PIRSF PIRSF016636 1 466 9.6E-151 T 06-07-2017 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB APT55_RS19020 3abf171e5fe5a24202c49961f5dd5d61 176 Pfam PF13673 Acetyltransferase (GNAT) domain 91 163 1.4E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS19020 3abf171e5fe5a24202c49961f5dd5d61 176 Gene3D G3DSA:3.40.630.30 45 175 1.9E-33 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS19020 3abf171e5fe5a24202c49961f5dd5d61 176 SUPERFAMILY SSF55729 45 166 2.22E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00387 1016 1129 1.4E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00387 457 568 1.8E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF47384 331 412 1.1E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.30.450.20 760 877 3.2E-22 T 06-07-2017 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.40.50.2300 1147 1270 8.6E-30 T 06-07-2017 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF08448 PAS fold 50 159 3.1E-5 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF08448 PAS fold 775 879 9.0E-16 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF52172 617 753 4.55E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF55874 960 1128 1.96E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.30.565.10 397 566 3.4E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.30.565.10 956 1131 4.0E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 770 883 5.2E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF55785 759 866 6.28E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00448 1150 1265 3.2E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00448 621 733 1.6E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF55874 400 566 1.96E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF55785 36 151 1.64E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF47384 892 970 3.53E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:1.10.287.130 334 396 8.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:1.10.287.130 896 955 5.7E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1127 8.8E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 566 1.4E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 507 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 546 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 565 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 521 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.40.50.2300 617 748 5.6E-39 T 06-07-2017 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00091 42 111 170.0 T 06-07-2017 IPR000014 PAS domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00091 769 835 6.8E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF52172 1148 1269 7.68E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SUPERFAMILY SSF55781 195 334 1.37E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.30.450.40 166 330 2.2E-8 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF00512 His Kinase A (phospho-acceptor) domain 905 969 9.2E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF00512 His Kinase A (phospho-acceptor) domain 344 411 1.2E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00388 904 970 9.5E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 SMART SM00388 343 411 2.6E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF00072 Response regulator receiver domain 1152 1265 4.5E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Pfam PF00072 Response regulator receiver domain 623 733 4.9E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08120 061013c65a17e98908e2d896adc4ca16 1271 Gene3D G3DSA:3.30.450.20 49 165 1.2E-5 T 06-07-2017 APT55_RS28650 55e9e9839581a9ebc32089110360c55f 223 Gene3D G3DSA:3.40.50.2300 12 104 9.1E-11 T 06-07-2017 APT55_RS28650 55e9e9839581a9ebc32089110360c55f 223 Pfam PF00072 Response regulator receiver domain 14 103 3.9E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28650 55e9e9839581a9ebc32089110360c55f 223 SUPERFAMILY SSF52172 12 104 1.42E-9 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28650 55e9e9839581a9ebc32089110360c55f 223 Gene3D G3DSA:1.10.10.10 160 200 2.0E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS15815 e2ed50b5f333e369c7c61ec9146eb6b5 394 SUPERFAMILY SSF140931 125 312 4.19E-42 T 06-07-2017 IPR003812 Fido domain APT55_RS15815 e2ed50b5f333e369c7c61ec9146eb6b5 394 Pfam PF13784 Fic/DOC family N-terminal 56 139 2.5E-22 T 06-07-2017 IPR025758 Fic/DOC N-terminal APT55_RS15815 e2ed50b5f333e369c7c61ec9146eb6b5 394 PIRSF PIRSF038925 30 394 7.9E-102 T 06-07-2017 IPR026287 Adenosine monophosphate-protein transferase APT55_RS15815 e2ed50b5f333e369c7c61ec9146eb6b5 394 Pfam PF02661 Fic/DOC family 146 245 1.3E-20 T 06-07-2017 IPR003812 Fido domain APT55_RS15815 e2ed50b5f333e369c7c61ec9146eb6b5 394 Gene3D G3DSA:1.10.3290.10 56 315 1.6E-56 T 06-07-2017 IPR003812 Fido domain APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 6 445 2.4E-229 T 06-07-2017 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Gene3D G3DSA:3.50.50.60 31 91 5.1E-7 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Gene3D G3DSA:3.50.50.60 291 331 2.1E-7 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Gene3D G3DSA:3.50.50.60 16 30 2.1E-7 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Pfam PF01134 Glucose inhibited division protein A 7 379 2.3E-113 T 06-07-2017 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 SUPERFAMILY SSF51905 2 379 7.77E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 7 447 34.726 T 06-07-2017 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Gene3D G3DSA:3.50.50.60 99 137 1.9E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05185 cf18dfb5556847ab9c3b8339658fba81 456 Gene3D G3DSA:3.50.50.60 7 15 1.9E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS30460 81fa5295d3cb060691732e4dec88c9ca 1036 Gene3D G3DSA:3.40.50.300 592 669 2.5E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30460 81fa5295d3cb060691732e4dec88c9ca 1036 Gene3D G3DSA:3.40.50.300 810 928 2.5E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30460 81fa5295d3cb060691732e4dec88c9ca 1036 SUPERFAMILY SSF52540 563 940 1.54E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 292 8.6E-29 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 Gene3D G3DSA:1.20.1510.10 12 205 4.0E-28 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 SUPERFAMILY SSF161111 11 205 3.01E-27 T 06-07-2017 APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 SUPERFAMILY SSF160240 221 290 5.89E-6 T 06-07-2017 APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 Gene3D G3DSA:3.30.70.1350 221 290 1.3E-6 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain APT55_RS00855 ba8d3e29cc6ffc554bb434abd872e940 315 Pfam PF01545 Cation efflux family 17 204 2.8E-19 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.450.20 233 346 2.9E-19 T 06-07-2017 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00086 712 754 9.5E-10 T 06-07-2017 IPR001610 PAC motif APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00086 441 483 0.14 T 06-07-2017 IPR001610 PAC motif APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00086 577 619 2.2E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00086 173 216 160.0 T 06-07-2017 IPR001610 PAC motif APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00387 889 999 6.0E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.450.20 661 754 7.5E-28 T 06-07-2017 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF00989 PAS fold 95 148 2.1E-5 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55785 79 214 5.76E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55785 233 322 4.84E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF08447 PAS fold 526 613 2.7E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.450.20 81 214 3.8E-17 T 06-07-2017 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 944 954 8.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 983 996 8.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 926 940 8.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 959 977 8.9E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00091 366 434 1.3E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00091 502 572 2.7E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00091 94 160 9.3E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00091 634 706 0.0097 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00091 242 308 2.1E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 367 489 1.5E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 498 625 3.4E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 661 758 1.2E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 90 221 7.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55785 353 474 2.74E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SMART SM00388 774 842 2.1E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.450.20 493 617 1.7E-28 T 06-07-2017 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:1.10.287.130 765 827 1.4E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF47384 760 843 7.06E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.450.20 353 475 1.0E-23 T 06-07-2017 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF00512 His Kinase A (phospho-acceptor) domain 775 841 4.4E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF13426 PAS domain 658 752 2.3E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55785 643 754 3.14E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55874 831 1000 5.24E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 SUPERFAMILY SSF55785 489 617 3.4E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Gene3D G3DSA:3.30.565.10 828 1001 4.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF08448 PAS fold 249 347 1.6E-11 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF08448 PAS fold 372 484 4.7E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS07600 b9863ee09d47284f391c9064d2033e0f 1006 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 890 998 3.0E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07425 cbb78211ee14af9a24364343fe7ac175 82 SMART SM00360 2 75 3.5E-25 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS07425 cbb78211ee14af9a24364343fe7ac175 82 SUPERFAMILY SSF54928 2 81 1.01E-28 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS07425 cbb78211ee14af9a24364343fe7ac175 82 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 1.1E-19 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS07425 cbb78211ee14af9a24364343fe7ac175 82 Gene3D G3DSA:3.30.70.330 2 81 3.7E-28 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SUPERFAMILY SSF48452 577 741 7.08E-34 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 Pfam PF13432 Tetratricopeptide repeat 582 639 2.0E-7 T 06-07-2017 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SMART SM00028 578 611 6.7E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SMART SM00028 646 679 4.0E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SMART SM00028 612 645 0.0032 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SMART SM00028 714 747 260.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 SMART SM00028 680 713 420.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 Gene3D G3DSA:1.25.40.10 574 662 2.7E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 Gene3D G3DSA:1.25.40.10 492 501 2.7E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05240 251a0fe036aa1fb32fa2b7414d80be4a 781 Gene3D G3DSA:1.25.40.10 663 743 1.6E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13510 5998712a110f53e5acaa87b1b6692ec5 335 SUPERFAMILY SSF51395 14 312 9.52E-63 T 06-07-2017 APT55_RS13510 5998712a110f53e5acaa87b1b6692ec5 335 Pfam PF01207 Dihydrouridine synthase (Dus) 15 263 8.8E-54 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT55_RS13510 5998712a110f53e5acaa87b1b6692ec5 335 Gene3D G3DSA:3.20.20.70 13 248 2.9E-65 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS13510 5998712a110f53e5acaa87b1b6692ec5 335 PIRSF PIRSF006621 1 330 4.8E-83 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT55_RS13865 c20257ee3840d517f149dbacab1c59b8 375 SUPERFAMILY SSF53756 1 368 1.79E-85 T 06-07-2017 APT55_RS13865 c20257ee3840d517f149dbacab1c59b8 375 Gene3D G3DSA:3.40.50.2000 165 345 2.3E-37 T 06-07-2017 APT55_RS13865 c20257ee3840d517f149dbacab1c59b8 375 Pfam PF00534 Glycosyl transferases group 1 198 346 5.2E-34 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS13865 c20257ee3840d517f149dbacab1c59b8 375 Pfam PF13439 Glycosyltransferase Family 4 15 177 1.4E-25 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Gene3D G3DSA:2.70.150.10 112 226 1.5E-41 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Gene3D G3DSA:2.70.150.10 22 58 1.5E-41 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF81660 335 554 2.83E-51 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF81653 116 226 3.79E-28 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Gene3D G3DSA:1.20.1110.10 59 111 8.2E-96 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Gene3D G3DSA:1.20.1110.10 623 937 8.2E-96 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Pfam PF00689 Cation transporting ATPase, C-terminus 739 934 4.1E-43 T 06-07-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Pfam PF00702 haloacid dehalogenase-like hydrolase 325 668 7.5E-21 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF56784 505 758 1.57E-63 T 06-07-2017 IPR023214 HAD-like domain APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF56784 326 346 1.57E-63 T 06-07-2017 IPR023214 HAD-like domain APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Pfam PF00690 Cation transporter/ATPase, N-terminus 8 73 3.4E-18 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 164 178 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 328 342 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 572 582 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 550 561 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 654 673 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 678 690 8.2E-41 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SMART SM00831 6 79 3.7E-24 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 628 737 1.7E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 86 349 1.1E-35 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 330 336 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 626 642 1.3E-20 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 686 711 1.3E-20 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 654 670 1.3E-20 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 508 526 1.3E-20 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Gene3D G3DSA:3.40.1110.10 318 557 1.4E-61 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 Pfam PF00122 E1-E2 ATPase 85 319 2.4E-63 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF81665 228 322 3.01E-112 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF81665 7 117 3.01E-112 T 06-07-2017 APT55_RS03625 6c44c6566dc50eaad759c3a9b69d0fcd 938 SUPERFAMILY SSF81665 704 937 3.01E-112 T 06-07-2017 APT55_RS14985 6cd6bfc6f1050408ed4b9066aa97daac 309 Pfam PF08241 Methyltransferase domain 169 218 3.9E-5 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS14985 6cd6bfc6f1050408ed4b9066aa97daac 309 Gene3D G3DSA:3.40.50.150 169 226 3.8E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14985 6cd6bfc6f1050408ed4b9066aa97daac 309 Gene3D G3DSA:3.40.50.150 259 271 3.8E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14985 6cd6bfc6f1050408ed4b9066aa97daac 309 SUPERFAMILY SSF53335 88 271 2.16E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04255 071fc84b48dc2d166382987621966409 266 SUPERFAMILY SSF51735 6 258 1.1E-69 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04255 071fc84b48dc2d166382987621966409 266 Gene3D G3DSA:3.40.50.720 2 255 2.7E-69 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS04255 071fc84b48dc2d166382987621966409 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 3.9E-82 T 06-07-2017 APT55_RS04255 071fc84b48dc2d166382987621966409 266 PIRSF PIRSF000094 1 262 3.0E-116 T 06-07-2017 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 APT55_RS10600 9fd3a37f00ced87717b3d9efcec878e1 366 Gene3D G3DSA:3.40.50.720 3 154 2.8E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS10600 9fd3a37f00ced87717b3d9efcec878e1 366 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 5 127 7.7E-23 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 APT55_RS10600 9fd3a37f00ced87717b3d9efcec878e1 366 SUPERFAMILY SSF51735 1 148 2.32E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24475 be53b3c84054067df6ab64625c0b2732 225 Pfam PF08241 Methyltransferase domain 67 166 1.1E-16 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS24475 be53b3c84054067df6ab64625c0b2732 225 SUPERFAMILY SSF53335 51 213 1.81E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24475 be53b3c84054067df6ab64625c0b2732 225 Gene3D G3DSA:3.40.50.150 46 212 7.3E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SMART SM00448 374 487 4.4E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SMART SM00448 1 112 1.5E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Pfam PF01627 Hpt domain 249 337 6.0E-8 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Gene3D G3DSA:1.10.10.10 126 221 9.9E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Gene3D G3DSA:1.20.120.160 240 332 7.3E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SUPERFAMILY SSF47226 257 341 2.62E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SUPERFAMILY SSF52172 368 498 2.85E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SMART SM00862 145 221 1.1E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SUPERFAMILY SSF46894 127 221 7.09E-24 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Pfam PF00072 Response regulator receiver domain 3 113 5.5E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Pfam PF00072 Response regulator receiver domain 376 487 2.1E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Gene3D G3DSA:3.40.50.2300 1 120 6.8E-36 T 06-07-2017 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 4.6E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 SUPERFAMILY SSF52172 1 118 2.42E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13470 6f9baa24a9e2d5aa2ba44817e518608b 500 Gene3D G3DSA:3.40.50.2300 373 498 4.9E-31 T 06-07-2017 APT55_RS20135 4097ae6d25d6b43b433922931c935006 363 Pfam PF02449 Beta-galactosidase 85 199 1.4E-8 T 06-07-2017 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APT55_RS20135 4097ae6d25d6b43b433922931c935006 363 SUPERFAMILY SSF51445 49 337 4.73E-25 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS20135 4097ae6d25d6b43b433922931c935006 363 Gene3D G3DSA:3.20.20.80 65 319 9.6E-22 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Pfam PF00400 WD domain, G-beta repeat 323 346 0.015 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Pfam PF00400 WD domain, G-beta repeat 269 305 0.0016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Pfam PF00400 WD domain, G-beta repeat 65 90 0.0062 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SUPERFAMILY SSF50978 272 349 4.48E-51 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SUPERFAMILY SSF50978 18 223 4.48E-51 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Pfam PF08662 Eukaryotic translation initiation factor eIF2A 106 204 7.8E-5 T 06-07-2017 IPR013979 Translation initiation factor, beta propellor-like domain APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Gene3D G3DSA:2.130.10.10 206 347 6.8E-27 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 Gene3D G3DSA:2.130.10.10 20 205 7.2E-36 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 51 91 0.088 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 136 174 6.4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 267 306 0.0094 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 7 49 0.027 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 218 260 19.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 95 133 1.9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 308 347 0.0021 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS07255 502bec6e7abe1656b8474076dfbbfb63 358 SMART SM00320 179 216 3.7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 Gene3D G3DSA:1.10.287.110 5 70 5.6E-24 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 SMART SM00271 5 62 3.2E-22 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 PRINTS PR00625 DnaJ domain signature 42 62 1.9E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 PRINTS PR00625 DnaJ domain signature 26 41 1.9E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 PRINTS PR00625 DnaJ domain signature 62 81 1.9E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 PRINTS PR00625 DnaJ domain signature 8 26 1.9E-16 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 SUPERFAMILY SSF46565 6 79 4.45E-24 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06855 8ca262fb8a4c41aa6273103616e912aa 237 Pfam PF00226 DnaJ domain 6 67 1.7E-21 T 06-07-2017 IPR001623 DnaJ domain APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 SUPERFAMILY SSF54570 3 84 3.4E-36 T 06-07-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.2E-24 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.2E-24 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.2E-24 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 PIRSF PIRSF002144 1 92 2.4E-33 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 2.0E-45 T 06-07-2017 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.965 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 Pfam PF00203 Ribosomal protein S19 3 83 3.0E-38 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 06-07-2017 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24725 a6c762e0605991b5534cc7a0300a9d27 92 Gene3D G3DSA:3.30.860.10 1 92 4.5E-42 T 06-07-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 SUPERFAMILY SSF52540 197 376 9.2E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 Gene3D G3DSA:3.40.50.300 11 194 9.7E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 Gene3D G3DSA:3.40.50.300 196 376 3.3E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 SUPERFAMILY SSF52540 16 189 4.78E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 19 195 1.8E-48 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS01925 465006d5ee3c1bd53823a324b5935445 376 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 197 376 1.3E-44 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 APT55_RS31615 444a50ff57a40e2e5644ffdd7ca2c95d 415 Pfam PF02371 Transposase IS116/IS110/IS902 family 273 357 1.2E-10 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 APT55_RS31615 444a50ff57a40e2e5644ffdd7ca2c95d 415 Pfam PF01548 Transposase 7 163 1.1E-24 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS16505 444a50ff57a40e2e5644ffdd7ca2c95d 415 Pfam PF02371 Transposase IS116/IS110/IS902 family 273 357 1.2E-10 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 APT55_RS16505 444a50ff57a40e2e5644ffdd7ca2c95d 415 Pfam PF01548 Transposase 7 163 1.1E-24 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 258 1.7E-62 T 06-07-2017 APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 3.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 Gene3D G3DSA:3.40.50.720 1 260 1.3E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 SUPERFAMILY SSF51735 4 259 2.13E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 1.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 1.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28150 8a48680326079d6a900f6e0697a61c39 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 1.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 296 302 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:3.40.1110.10 284 311 4.9E-6 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF81653 97 190 3.53E-21 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:1.20.1110.10 46 92 2.4E-45 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:1.20.1110.10 500 785 2.4E-45 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 503 519 2.0E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 531 547 2.0E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 395 413 2.0E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:3.40.1110.10 352 420 5.6E-6 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Pfam PF00702 haloacid dehalogenase-like hydrolase 290 545 4.7E-22 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF81665 6 98 2.22E-46 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF81665 196 288 2.22E-46 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF81665 580 786 2.22E-46 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 67 315 2.0E-32 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 499 612 3.5E-25 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 430 441 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 452 462 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 294 308 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 554 566 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 145 159 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 531 550 5.7E-25 T 06-07-2017 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:2.70.150.10 6 40 6.7E-23 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Gene3D G3DSA:2.70.150.10 93 190 6.7E-23 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 Pfam PF00122 E1-E2 ATPase 65 285 2.8E-48 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF56784 292 312 1.97E-38 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06805 20b07cc15550fa40a0c5fcde4cafd99d 803 SUPERFAMILY SSF56784 392 592 1.97E-38 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21095 da870f3ac0cdfdceaea3e20d05bd9857 237 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS21095 da870f3ac0cdfdceaea3e20d05bd9857 237 SUPERFAMILY SSF52540 17 228 3.67E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21095 da870f3ac0cdfdceaea3e20d05bd9857 237 Gene3D G3DSA:3.40.50.300 15 229 4.1E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21095 da870f3ac0cdfdceaea3e20d05bd9857 237 Pfam PF00005 ABC transporter 35 167 5.0E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS21095 da870f3ac0cdfdceaea3e20d05bd9857 237 SMART SM00382 43 223 6.9E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS30260 68edb325ddbb23ff6476c2435923fad5 165 Gene3D G3DSA:3.10.180.10 5 137 4.1E-50 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS30260 68edb325ddbb23ff6476c2435923fad5 165 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 6 125 2.3E-49 T 06-07-2017 IPR028973 PhnB-like APT55_RS30260 68edb325ddbb23ff6476c2435923fad5 165 PIRSF PIRSF021700 2 165 2.8E-62 T 06-07-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase APT55_RS30260 68edb325ddbb23ff6476c2435923fad5 165 SUPERFAMILY SSF54593 6 162 6.89E-50 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 PIRSF PIRSF006404 1 373 4.0E-111 T 06-07-2017 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 Gene3D G3DSA:3.10.580.10 237 368 1.7E-14 T 06-07-2017 APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 Pfam PF02163 Peptidase family M50 137 190 2.9E-8 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 SMART SM00116 317 365 0.0032 T 06-07-2017 IPR000644 CBS domain APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 SMART SM00116 250 300 5.8 T 06-07-2017 IPR000644 CBS domain APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 SUPERFAMILY SSF54631 241 366 5.12E-13 T 06-07-2017 APT55_RS14100 cf064f675bb310e3c188dc67a9a292e2 373 Pfam PF00571 CBS domain 317 365 0.0039 T 06-07-2017 IPR000644 CBS domain APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 Pfam PF00557 Metallopeptidase family M24 142 405 7.5E-47 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 SUPERFAMILY SSF55920 137 417 1.09E-57 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 Gene3D G3DSA:3.90.230.10 134 417 3.4E-62 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 Gene3D G3DSA:3.40.350.10 11 115 2.4E-18 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 307 319 - T 06-07-2017 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 Pfam PF05195 Aminopeptidase P, N-terminal domain 15 117 8.7E-18 T 06-07-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 SUPERFAMILY SSF53092 13 117 1.41E-21 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal APT55_RS15555 0f09a6b651128ae173d95096f1894f4e 421 SMART SM01011 9 139 1.2E-13 T 06-07-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT55_RS07695 af1adc6fe2dee27f923036e6c313090c 220 Gene3D G3DSA:3.20.20.70 2 205 3.8E-64 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS07695 af1adc6fe2dee27f923036e6c313090c 220 SUPERFAMILY SSF51569 4 202 5.31E-54 T 06-07-2017 APT55_RS07695 af1adc6fe2dee27f923036e6c313090c 220 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 8 203 1.0E-53 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APT55_RS07695 af1adc6fe2dee27f923036e6c313090c 220 Pfam PF01081 KDPG and KHG aldolase 10 197 1.1E-34 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APT55_RS01645 7a7221aa222d63ae7292f19c4ccad594 266 Pfam PF12679 ABC-2 family transporter protein 67 265 3.5E-15 T 06-07-2017 IPR032688 ABC-2 family transporter protein GO:0006810 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 SUPERFAMILY SSF52440 2 114 2.95E-49 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 SUPERFAMILY SSF56059 84 353 5.83E-76 T 06-07-2017 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 SMART SM00878 337 443 7.6E-66 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 5.1E-42 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Gene3D G3DSA:3.30.1490.20 131 203 1.9E-30 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Gene3D G3DSA:3.30.470.20 204 445 4.9E-107 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 SUPERFAMILY SSF51246 332 445 8.37E-46 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 4.2E-45 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 7.6E-87 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 3 446 4.1E-243 T 06-07-2017 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 APT55_RS07510 4e001bbcf9c32e77ab3fe0d488664b3e 450 Gene3D G3DSA:3.40.50.20 3 130 9.8E-52 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS16285 c1234e5d790ba38c2dfdb4204d303b02 292 Gene3D G3DSA:3.30.2010.10 61 150 7.8E-31 T 06-07-2017 APT55_RS16285 c1234e5d790ba38c2dfdb4204d303b02 292 Hamap MF_00188 Protease HtpX [htpX]. 6 282 26.949 T 06-07-2017 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 APT55_RS16285 c1234e5d790ba38c2dfdb4204d303b02 292 Pfam PF01435 Peptidase family M48 69 282 1.0E-33 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Pfam PF02875 Mur ligase family, glutamate ligase domain 343 430 2.2E-23 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 25 497 2.8E-170 T 06-07-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 497 34.935 T 06-07-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Gene3D G3DSA:3.90.190.20 347 491 1.9E-59 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 SUPERFAMILY SSF53623 113 342 1.7E-75 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Gene3D G3DSA:3.40.1390.10 18 111 2.2E-17 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 120 144 - T 06-07-2017 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Pfam PF08245 Mur ligase middle domain 122 323 3.9E-55 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 SUPERFAMILY SSF53244 343 499 2.29E-51 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Gene3D G3DSA:3.40.1190.10 113 346 8.7E-81 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 SUPERFAMILY SSF63418 15 111 1.24E-17 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS22360 86d7183061a46c88c68a10d9ca1235e0 501 Pfam PF01225 Mur ligase family, catalytic domain 26 110 9.4E-13 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 SUPERFAMILY SSF52540 8 239 1.3E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 SMART SM00382 34 238 2.2E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 10 252 2.8E-108 T 06-07-2017 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 Gene3D G3DSA:3.40.50.300 6 242 3.8E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24050 53a08b97c1ee80aea0a8f50f045cb17e 260 Pfam PF00005 ABC transporter 25 179 9.2E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS30640 f3715df1c066f1f9e01a25ce9ba8eafd 834 Pfam PF12770 CHAT domain 559 832 4.8E-53 T 06-07-2017 IPR024983 CHAT domain APT55_RS30640 f3715df1c066f1f9e01a25ce9ba8eafd 834 SUPERFAMILY SSF48452 43 176 5.06E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30640 f3715df1c066f1f9e01a25ce9ba8eafd 834 Gene3D G3DSA:1.25.40.10 324 419 8.5E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30640 f3715df1c066f1f9e01a25ce9ba8eafd 834 Gene3D G3DSA:1.25.40.10 42 242 8.5E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21070 8058d379617c5361f47f1f2e88b8fc90 106 Pfam PF01740 STAS domain 8 100 1.7E-11 T 06-07-2017 IPR002645 STAS domain APT55_RS21070 8058d379617c5361f47f1f2e88b8fc90 106 Gene3D G3DSA:3.30.750.24 7 99 1.7E-22 T 06-07-2017 IPR002645 STAS domain APT55_RS21070 8058d379617c5361f47f1f2e88b8fc90 106 SUPERFAMILY SSF52091 7 96 1.0E-19 T 06-07-2017 IPR002645 STAS domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 ProSitePatterns PS00636 Nt-dnaJ domain signature. 50 69 - T 06-07-2017 IPR018253 DnaJ domain, conserved site APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 Pfam PF01556 DnaJ C terminal domain 156 301 5.9E-34 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 SUPERFAMILY SSF49493 232 312 2.35E-18 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 Gene3D G3DSA:1.10.287.110 4 85 1.0E-33 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 Gene3D G3DSA:2.60.260.20 153 220 2.2E-13 T 06-07-2017 APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 Pfam PF00226 DnaJ domain 8 70 6.5E-28 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 Gene3D G3DSA:2.60.260.20 227 302 1.8E-17 T 06-07-2017 APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 SUPERFAMILY SSF49493 152 230 4.19E-14 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 PRINTS PR00625 DnaJ domain signature 10 28 1.9E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 PRINTS PR00625 DnaJ domain signature 45 65 1.9E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 PRINTS PR00625 DnaJ domain signature 28 43 1.9E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 PRINTS PR00625 DnaJ domain signature 65 84 1.9E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 SMART SM00271 7 65 9.2E-33 T 06-07-2017 IPR001623 DnaJ domain APT55_RS01865 7650f957f4a758b507993408ae987aa3 332 SUPERFAMILY SSF46565 4 76 2.36E-33 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SMART SM00388 399 467 2.2E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Pfam PF00989 PAS fold 279 390 3.5E-8 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Gene3D G3DSA:1.10.287.130 391 463 1.9E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Gene3D G3DSA:3.30.450.20 270 390 5.6E-15 T 06-07-2017 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 626 1.0E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SMART SM00091 278 344 4.5E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 584 7.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 608 7.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 570 7.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 627 7.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SUPERFAMILY SSF158472 214 265 2.22E-6 T 06-07-2017 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 276 399 2.2E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Gene3D G3DSA:3.30.565.10 471 626 5.7E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SUPERFAMILY SSF55874 456 626 2.75E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SMART SM00304 213 267 4.5E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SMART SM00387 512 630 1.5E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Pfam PF00672 HAMP domain 194 264 7.7E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SUPERFAMILY SSF55785 268 391 6.28E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 SUPERFAMILY SSF47384 387 466 3.14E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12005 361823883eefbd9c9380f0e06faafb3c 653 Pfam PF00512 His Kinase A (phospho-acceptor) domain 399 466 6.8E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06200 3c74f532a42ad1cc847aa36ca090be9a 108 Gene3D G3DSA:3.30.360.10 16 94 3.5E-4 T 06-07-2017 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 Pfam PF08442 ATP-grasp domain 2 186 1.6E-34 T 06-07-2017 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 Pfam PF00549 CoA-ligase 244 372 1.2E-5 T 06-07-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 PIRSF PIRSF001554 1 395 6.7E-106 T 06-07-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 Gene3D G3DSA:3.30.470.20 80 222 7.8E-34 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 SUPERFAMILY SSF56059 1 219 1.56E-44 T 06-07-2017 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 Gene3D G3DSA:3.40.50.261 231 391 1.4E-30 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 SUPERFAMILY SSF52210 232 391 1.03E-24 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20190 6c4eee3cf3e45c58cde9f1f61fa50f2c 397 Gene3D G3DSA:3.30.470.20 6 79 5.9E-6 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 Pfam PF00416 Ribosomal protein S13/S18 3 109 6.6E-30 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 PIRSF PIRSF002134 1 125 8.0E-45 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 2.6E-52 T 06-07-2017 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 SUPERFAMILY SSF46946 2 123 1.31E-46 T 06-07-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 06-07-2017 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 Gene3D G3DSA:4.10.910.10 75 123 9.9E-27 T 06-07-2017 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 27.963 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09155 a759d8084aa5074c7279db612e78e1ef 127 Gene3D G3DSA:1.10.8.50 2 72 6.4E-30 T 06-07-2017 APT55_RS11925 639fb9043dff8484bd1cc1b2d534a4db 191 Pfam PF01725 Ham1 family 4 183 4.0E-55 T 06-07-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 APT55_RS11925 639fb9043dff8484bd1cc1b2d534a4db 191 Gene3D G3DSA:3.90.950.10 3 189 1.2E-67 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like APT55_RS11925 639fb9043dff8484bd1cc1b2d534a4db 191 SUPERFAMILY SSF52972 1 187 1.05E-62 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like APT55_RS11925 639fb9043dff8484bd1cc1b2d534a4db 191 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 183 2.1E-59 T 06-07-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 APT55_RS11925 639fb9043dff8484bd1cc1b2d534a4db 191 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 188 45.059 T 06-07-2017 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Pfam PF03471 Transporter associated domain 376 453 1.5E-20 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Pfam PF00571 CBS domain 317 359 5.9E-5 T 06-07-2017 IPR000644 CBS domain APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Pfam PF00571 CBS domain 241 295 0.0026 T 06-07-2017 IPR000644 CBS domain APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Gene3D G3DSA:3.30.465.10 370 454 3.0E-24 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Pfam PF01595 Domain of unknown function DUF21 28 225 1.1E-42 T 06-07-2017 IPR002550 Domain of unknown function DUF21 APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 Gene3D G3DSA:3.10.580.10 226 369 4.5E-17 T 06-07-2017 APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 SUPERFAMILY SSF56176 370 453 5.73E-21 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 SMART SM01091 375 454 4.3E-25 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS18900 8dfeab8b63b370ff2312f5ff40282f6a 465 SUPERFAMILY SSF54631 228 364 4.67E-28 T 06-07-2017 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 SUPERFAMILY SSF51905 3 172 5.7E-45 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 SUPERFAMILY SSF51905 280 354 5.7E-45 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 Gene3D G3DSA:3.50.50.60 100 165 2.6E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 Gene3D G3DSA:3.50.50.60 2 57 2.6E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 Gene3D G3DSA:3.30.9.10 166 327 4.1E-28 T 06-07-2017 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 7.9E-18 T 06-07-2017 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 7.9E-18 T 06-07-2017 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 7.9E-18 T 06-07-2017 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 Pfam PF01494 FAD binding domain 4 309 9.9E-18 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS07615 dd2da84e6e94521076ebcd1b4afbe7ee 405 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 4 319 1.2E-60 T 06-07-2017 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 Gene3D G3DSA:3.10.180.10 1 76 2.0E-6 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 186 330 3.4E-6 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 SUPERFAMILY SSF54593 281 334 6.98E-11 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 SUPERFAMILY SSF54593 181 244 6.98E-11 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 Gene3D G3DSA:3.10.180.10 278 333 3.2E-10 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS20015 e661a674c0d1e313cbfaf7c85f1307df 335 Gene3D G3DSA:3.10.180.10 180 244 3.2E-10 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 Gene3D G3DSA:2.60.120.10 43 103 5.1E-4 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 Gene3D G3DSA:1.10.10.10 131 200 1.9E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 SUPERFAMILY SSF46785 131 196 7.5E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 Pfam PF13545 Crp-like helix-turn-helix domain 132 199 3.4E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 SUPERFAMILY SSF51206 43 111 2.26E-7 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 SMART SM00419 150 199 7.3E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 156 172 7.8E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS25025 29fbbb8befa186e32fff6a35edef035a 203 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 172 187 7.8E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS25330 466d20feaefb001aced8659107dfe643 429 Gene3D G3DSA:3.40.190.10 323 367 4.1E-40 T 06-07-2017 APT55_RS25330 466d20feaefb001aced8659107dfe643 429 Gene3D G3DSA:3.40.190.10 37 152 4.1E-40 T 06-07-2017 APT55_RS25330 466d20feaefb001aced8659107dfe643 429 SUPERFAMILY SSF53850 26 427 4.14E-80 T 06-07-2017 APT55_RS25330 466d20feaefb001aced8659107dfe643 429 Gene3D G3DSA:3.40.190.10 153 322 4.5E-6 T 06-07-2017 APT55_RS25330 466d20feaefb001aced8659107dfe643 429 Pfam PF01547 Bacterial extracellular solute-binding protein 51 337 1.5E-40 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Gene3D G3DSA:2.40.50.100 241 277 5.4E-8 T 06-07-2017 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Gene3D G3DSA:2.40.50.100 343 358 5.4E-8 T 06-07-2017 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Pfam PF00005 ABC transporter 21 163 4.7E-37 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 SUPERFAMILY SSF50331 238 357 3.64E-22 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Gene3D G3DSA:3.40.50.300 2 236 1.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 SUPERFAMILY SSF52540 5 245 1.54E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Pfam PF08402 TOBE domain 273 349 5.6E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 SMART SM00382 30 212 4.1E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS14535 d7f7e6e3f18e88d9a49a4858a897e8bd 366 Gene3D G3DSA:2.40.50.140 278 341 4.8E-10 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Pfam PF13432 Tetratricopeptide repeat 370 432 0.0017 T 06-07-2017 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Gene3D G3DSA:2.40.10.10 135 228 1.3E-14 T 06-07-2017 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Gene3D G3DSA:1.25.40.10 359 439 2.9E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Pfam PF13371 Tetratricopeptide repeat 277 341 2.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Gene3D G3DSA:1.25.40.10 263 358 6.1E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Gene3D G3DSA:1.25.40.10 440 528 1.9E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Pfam PF13181 Tetratricopeptide repeat 502 528 0.11 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SUPERFAMILY SSF50494 14 237 1.91E-27 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Pfam PF13365 Trypsin-like peptidase domain 57 212 1.0E-21 T 06-07-2017 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SUPERFAMILY SSF48452 341 529 4.93E-37 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SUPERFAMILY SSF48452 258 365 7.97E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 Gene3D G3DSA:2.40.10.10 53 134 6.6E-11 T 06-07-2017 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 433 466 0.025 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 399 432 0.002 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 331 364 0.32 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 365 398 0.0022 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 501 534 0.25 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 265 296 33.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 297 330 16.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18040 a9a13d483dabf739c500716a103fbf64 562 SMART SM00028 467 500 0.11 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 SUPERFAMILY SSF52540 154 421 6.53E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 SMART SM00382 190 329 6.8E-26 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Pfam PF01434 Peptidase family M41 388 601 6.8E-86 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 SUPERFAMILY SSF140990 408 605 3.53E-74 T 06-07-2017 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 194 326 3.7E-46 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Gene3D G3DSA:1.10.8.60 328 401 3.0E-26 T 06-07-2017 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 105 602 2.3E-240 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 605 37.924 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Gene3D G3DSA:3.40.50.300 153 325 1.7E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01220 c52d1ac959ed681297eac56829c33513 613 Pfam PF06480 FtsH Extracellular 10 70 1.7E-6 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 Gene3D G3DSA:2.160.20.10 204 371 3.0E-38 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 Gene3D G3DSA:2.160.20.10 29 158 3.0E-38 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 SUPERFAMILY SSF51126 415 538 1.51E-6 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 SUPERFAMILY SSF51126 627 654 1.51E-6 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 SMART SM00912 30 141 3.0E-23 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 SUPERFAMILY SSF51126 22 146 1.08E-42 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 SUPERFAMILY SSF51126 204 380 1.08E-42 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 Pfam PF05860 haemagglutination activity domain 26 140 8.7E-35 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS30630 1bd6867a659f68e1d1f52d32325da5ff 859 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 59 136 1.9E-25 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS25585 9162d5c8686a0f61fda6a60c840d5619 407 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 23 402 40.753 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT55_RS25585 9162d5c8686a0f61fda6a60c840d5619 407 SUPERFAMILY SSF56014 310 398 1.27E-10 T 06-07-2017 APT55_RS25585 9162d5c8686a0f61fda6a60c840d5619 407 Pfam PF04551 GcpE protein 28 398 5.5E-142 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT55_RS25585 9162d5c8686a0f61fda6a60c840d5619 407 PIRSF PIRSF004640 17 405 9.5E-129 T 06-07-2017 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT55_RS25585 9162d5c8686a0f61fda6a60c840d5619 407 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 25 398 5.6E-156 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT55_RS07910 dada42d0e403b104c45b0aa2f701afa0 195 SUPERFAMILY SSF81342 4 181 6.91E-19 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS07910 dada42d0e403b104c45b0aa2f701afa0 195 Gene3D G3DSA:1.20.950.20 10 162 6.7E-7 T 06-07-2017 APT55_RS07910 dada42d0e403b104c45b0aa2f701afa0 195 Pfam PF01292 Prokaryotic cytochrome b561 9 164 3.5E-16 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Gene3D G3DSA:3.30.479.20 57 112 2.4E-34 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Gene3D G3DSA:3.30.479.20 158 202 2.4E-34 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 06-07-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Gene3D G3DSA:1.10.286.20 114 157 8.3E-15 T 06-07-2017 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 SUPERFAMILY SSF46934 4 55 1.07E-19 T 06-07-2017 IPR009060 UBA-like GO:0005515 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 06-07-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 SUPERFAMILY SSF54713 57 199 9.81E-50 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 93 216 3.5E-32 T 06-07-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 97 5.9E-40 T 06-07-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Hamap MF_00050 Elongation factor Ts [tsf]. 1 216 52.141 T 06-07-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Pfam PF00889 Elongation factor TS 56 199 2.4E-33 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS01935 a1f722a94fda1e1d9992aa4e69be23ee 220 Gene3D G3DSA:1.10.8.10 3 54 8.7E-28 T 06-07-2017 APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 SMART SM00382 258 393 3.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 Gene3D G3DSA:1.10.8.60 400 464 6.1E-10 T 06-07-2017 APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 SUPERFAMILY SSF52540 34 214 3.9E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 SUPERFAMILY SSF52540 227 467 2.16E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 Gene3D G3DSA:3.40.50.300 226 399 1.7E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01015 6ced118a5dc5407e1052328b4daa86d8 507 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 262 390 6.6E-29 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 430 531 3.1E-5 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 183 2.4E-36 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 11 441 9.3E-142 T 06-07-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 SUPERFAMILY SSF52518 6 184 1.12E-37 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 6 563 35.698 T 06-07-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 PIRSF PIRSF004983 3 567 1.9E-174 T 06-07-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Pfam PF16582 Middle domain of thiamine pyrophosphate 216 398 9.5E-12 T 06-07-2017 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 SUPERFAMILY SSF52518 383 553 1.5E-23 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Gene3D G3DSA:3.40.50.970 9 184 8.8E-50 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS27225 838436782fb9588b046f3abe94e20ace 567 Gene3D G3DSA:3.40.50.970 352 551 1.6E-19 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS08720 b403b0247762313009cf17ad9c5af3f7 156 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 130 4.1E-39 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS08720 b403b0247762313009cf17ad9c5af3f7 156 SUPERFAMILY SSF55083 3 153 1.26E-51 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS08720 b403b0247762313009cf17ad9c5af3f7 156 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 2.6E-37 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS08720 b403b0247762313009cf17ad9c5af3f7 156 Gene3D G3DSA:3.30.70.560 2 149 7.2E-52 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS05615 cec479c1e7e952795e86ccc2bc6378cd 291 SUPERFAMILY SSF103481 43 140 2.68E-16 T 06-07-2017 APT55_RS05615 cec479c1e7e952795e86ccc2bc6378cd 291 SUPERFAMILY SSF103481 186 290 1.7E-14 T 06-07-2017 APT55_RS05615 cec479c1e7e952795e86ccc2bc6378cd 291 Pfam PF00892 EamA-like transporter family 153 286 1.6E-22 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS05615 cec479c1e7e952795e86ccc2bc6378cd 291 Pfam PF00892 EamA-like transporter family 9 140 4.8E-25 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 53 76 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00722 413 552 70.0 T 06-07-2017 IPR006633 Carbohydrate-binding/sugar hydrolysis domain APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00722 574 712 0.0014 T 06-07-2017 IPR006633 Carbohydrate-binding/sugar hydrolysis domain APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 760 782 89.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 737 759 1500.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 622 644 62.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 576 598 770.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 439 461 440.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 415 437 4200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 508 530 2.2 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 462 484 830.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 691 713 450.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 828 850 1100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 668 690 110.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 599 621 450.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 714 736 590.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 805 827 3.8 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 553 575 1.5 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 485 507 190.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 531 552 850.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00710 645 667 200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Pfam PF12708 Pectate lyase superfamily protein 334 521 6.8E-7 T 06-07-2017 IPR024535 Pectate lyase superfamily protein APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SUPERFAMILY SSF51126 512 709 7.11E-31 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 502 542 3.2E-5 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 593 635 1.2E-5 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SUPERFAMILY SSF51126 321 551 2.03E-39 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Pfam PF00069 Protein kinase domain 48 266 3.8E-40 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SUPERFAMILY SSF51126 695 859 2.57E-20 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 182 194 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Gene3D G3DSA:1.10.510.10 173 312 1.1E-30 T 06-07-2017 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Pfam PF13229 Right handed beta helix region 524 668 7.3E-26 T 06-07-2017 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SUPERFAMILY SSF56112 35 318 4.05E-58 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Pfam PF05048 Periplasmic copper-binding protein (NosD) 731 846 3.3E-7 T 06-07-2017 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 SMART SM00220 47 313 1.1E-39 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Gene3D G3DSA:2.160.20.10 320 522 9.6E-22 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Gene3D G3DSA:2.160.20.10 525 669 5.6E-21 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Gene3D G3DSA:2.160.20.10 704 845 7.0E-16 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27525 89d82221cc8c54e523f96794591b5cd3 863 Gene3D G3DSA:3.30.200.20 42 172 7.6E-28 T 06-07-2017 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 SUPERFAMILY SSF51569 1 326 6.3E-144 T 06-07-2017 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PIRSF PIRSF001415 1 327 1.4E-156 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 299 318 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 192 211 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 244 260 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 269 284 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 120 134 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 154 173 9.4E-61 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 SMART SM01004 2 325 2.3E-246 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 Gene3D G3DSA:3.20.20.70 2 325 3.5E-152 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 Pfam PF00490 Delta-aminolevulinic acid dehydratase 5 324 1.5E-151 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00835 8aa7bc97c0307b1fee7a75bc3be5ef1a 327 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 244 256 - T 06-07-2017 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS16540 0dfc77ba26d01e2e914470434ce19fa2 111 Gene3D G3DSA:3.30.750.24 6 103 7.9E-27 T 06-07-2017 IPR002645 STAS domain APT55_RS16540 0dfc77ba26d01e2e914470434ce19fa2 111 SUPERFAMILY SSF52091 5 104 5.89E-24 T 06-07-2017 IPR002645 STAS domain APT55_RS16540 0dfc77ba26d01e2e914470434ce19fa2 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 9 103 2.2E-18 T 06-07-2017 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT55_RS16540 0dfc77ba26d01e2e914470434ce19fa2 111 Pfam PF01740 STAS domain 7 103 1.2E-15 T 06-07-2017 IPR002645 STAS domain APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 Gene3D G3DSA:2.130.10.10 60 153 2.6E-25 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 Gene3D G3DSA:2.130.10.10 154 333 2.1E-32 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 180 218 4.7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 297 335 51.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 90 129 2.3E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 259 294 0.48 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 221 256 0.0096 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 132 166 12.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SMART SM00320 53 87 97.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 116 130 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 Pfam PF00400 WD domain, G-beta repeat 97 129 9.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 Pfam PF00400 WD domain, G-beta repeat 190 210 0.076 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04730 b5a9db7914e972bdba9a69cdb31980e9 344 SUPERFAMILY SSF50978 60 331 5.68E-50 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS13460 18c062fa142da6cc612005fedd648bf3 162 TIGRFAM TIGR01338 phycocy_alpha: phycocyanin, alpha subunit 2 162 6.9E-92 T 06-07-2017 IPR006246 Phycocyanin, alpha subunit GO:0015979|GO:0030089 APT55_RS13460 18c062fa142da6cc612005fedd648bf3 162 SUPERFAMILY SSF46458 1 162 6.89E-55 T 06-07-2017 IPR009050 Globin-like APT55_RS13460 18c062fa142da6cc612005fedd648bf3 162 Gene3D G3DSA:1.10.490.20 1 162 2.3E-56 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13460 18c062fa142da6cc612005fedd648bf3 162 PIRSF PIRSF000081 1 162 4.5E-44 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13460 18c062fa142da6cc612005fedd648bf3 162 Pfam PF00502 Phycobilisome protein 8 161 3.8E-48 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS30335 810be4571e110d81f476a78cebdde8f1 247 Pfam PF13649 Methyltransferase domain 45 141 1.3E-17 T 06-07-2017 APT55_RS30335 810be4571e110d81f476a78cebdde8f1 247 SUPERFAMILY SSF53335 3 240 1.37E-34 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30335 810be4571e110d81f476a78cebdde8f1 247 Gene3D G3DSA:3.40.50.150 2 239 1.7E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 Gene3D G3DSA:3.30.450.40 35 215 1.9E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SUPERFAMILY SSF47384 300 332 1.73E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SUPERFAMILY SSF47384 230 270 1.73E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 331 6.6E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 497 8.6E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SMART SM00387 377 497 1.2E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 441 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 455 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 476 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 496 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 Pfam PF01590 GAF domain 60 199 2.5E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SUPERFAMILY SSF55874 322 497 8.91E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 Gene3D G3DSA:3.30.565.10 330 497 1.4E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SMART SM00065 59 211 2.9E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28660 ec151e0f83c91c76698b0771638f9b31 497 SUPERFAMILY SSF55781 59 213 6.32E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 SUPERFAMILY SSF53187 170 485 3.45E-114 T 06-07-2017 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 Gene3D G3DSA:3.40.630.10 169 485 9.2E-131 T 06-07-2017 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 486 35.829 T 06-07-2017 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 337 344 - T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 PRINTS PR00481 Cytosol aminopeptidase signature 274 295 3.1E-55 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 PRINTS PR00481 Cytosol aminopeptidase signature 311 332 3.1E-55 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 PRINTS PR00481 Cytosol aminopeptidase signature 361 376 3.1E-55 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 PRINTS PR00481 Cytosol aminopeptidase signature 333 353 3.1E-55 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 PRINTS PR00481 Cytosol aminopeptidase signature 251 268 3.1E-55 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 Gene3D G3DSA:3.40.220.10 1 153 1.8E-28 T 06-07-2017 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 20 141 3.5E-29 T 06-07-2017 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 175 481 3.2E-116 T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT55_RS10070 7a8fc221443324b9780d2c77128d117d 486 SUPERFAMILY SSF52949 1 173 1.24E-35 T 06-07-2017 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 59 1.7E-12 T 06-07-2017 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 SUPERFAMILY SSF51905 1 359 6.1E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 SUPERFAMILY SSF51905 387 411 6.1E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 Gene3D G3DSA:3.50.50.60 104 160 3.5E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 Gene3D G3DSA:3.50.50.60 1 67 3.5E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 Gene3D G3DSA:3.50.50.60 243 366 3.5E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 PRINTS PR00419 Adrenodoxin reductase family signature 28 41 1.8E-7 T 06-07-2017 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 PRINTS PR00419 Adrenodoxin reductase family signature 167 181 1.8E-7 T 06-07-2017 APT55_RS16030 b8a2c204fb630a2c348f8ec77828b055 563 PRINTS PR00419 Adrenodoxin reductase family signature 5 27 1.8E-7 T 06-07-2017 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 TIGRFAM TIGR01151 psbA: photosystem II q(b) protein 1 360 1.4E-241 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 Hamap MF_01379 Photosystem II protein D1 [psbA]. 1 347 59.715 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 SUPERFAMILY SSF81483 13 343 4.84E-144 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 191 217 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 Pfam PF00124 Photosynthetic reaction centre protein 28 327 6.1E-96 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 197 223 7.9E-6 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 109 137 7.9E-6 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS06905 b47c1f80225739ce157eab13947e0555 360 Gene3D G3DSA:1.20.85.10 141 312 2.0E-83 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS17640 7c882be9a9505a6470e7783856439866 332 SUPERFAMILY SSF51197 133 308 9.48E-15 T 06-07-2017 APT55_RS17640 7c882be9a9505a6470e7783856439866 332 Gene3D G3DSA:2.60.120.620 141 302 1.7E-7 T 06-07-2017 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 290 1.1E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SUPERFAMILY SSF52172 484 603 6.12E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SUPERFAMILY SSF47384 208 292 3.73E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SUPERFAMILY SSF55874 280 445 1.03E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 443 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 2.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SMART SM00387 337 446 2.5E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SMART SM00448 485 598 1.9E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 SMART SM00388 223 291 6.6E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Gene3D G3DSA:3.40.50.2300 482 604 1.4E-36 T 06-07-2017 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 445 1.0E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Gene3D G3DSA:3.30.565.10 292 448 4.5E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Gene3D G3DSA:1.10.287.130 215 287 2.0E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01640 f3fbcd1a9dbf02991bfcbbaf6dd34bce 605 Pfam PF00072 Response regulator receiver domain 487 598 1.1E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04610 d9cd61bbacb63c61aab166fd15dad8ec 274 Gene3D G3DSA:1.10.3720.10 3 261 3.0E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04610 d9cd61bbacb63c61aab166fd15dad8ec 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 267 9.3E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04610 d9cd61bbacb63c61aab166fd15dad8ec 274 SUPERFAMILY SSF161098 2 273 1.12E-74 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Gene3D G3DSA:2.40.30.10 206 303 9.3E-26 T 06-07-2017 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Gene3D G3DSA:3.30.70.870 304 399 6.6E-38 T 06-07-2017 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Gene3D G3DSA:3.40.50.300 4 205 2.8E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 595 1.8E-288 T 06-07-2017 IPR006298 GTP-binding protein TypA GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 134 1.8E-21 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 SUPERFAMILY SSF52540 4 206 3.17E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Pfam PF03144 Elongation factor Tu domain 2 219 289 1.3E-7 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Gene3D G3DSA:2.40.50.250 482 576 2.8E-38 T 06-07-2017 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 2.3E-54 T 06-07-2017 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Gene3D G3DSA:3.30.70.240 400 481 2.2E-29 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 PRINTS PR00315 GTP-binding elongation factor signature 123 132 3.6E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 PRINTS PR00315 GTP-binding elongation factor signature 87 98 3.6E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 PRINTS PR00315 GTP-binding elongation factor signature 7 20 3.6E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 PRINTS PR00315 GTP-binding elongation factor signature 51 59 3.6E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 PRINTS PR00315 GTP-binding elongation factor signature 71 81 3.6E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 SUPERFAMILY SSF54980 398 512 1.01E-27 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 SUPERFAMILY SSF54980 302 387 1.15E-15 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 SUPERFAMILY SSF50447 182 301 1.74E-29 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS12960 f430095281d0c7e3e2da3dc4672c5bba 598 Pfam PF00679 Elongation factor G C-terminus 397 480 1.1E-20 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 Pfam PF13537 Glutamine amidotransferase domain 106 211 3.3E-16 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 SUPERFAMILY SSF53271 268 481 3.15E-71 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 SUPERFAMILY SSF56235 23 269 6.26E-67 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 Pfam PF00156 Phosphoribosyl transferase domain 305 402 1.4E-7 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 Gene3D G3DSA:3.60.20.10 23 275 1.8E-67 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 Gene3D G3DSA:3.40.50.2020 288 455 1.8E-45 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 PIRSF PIRSF000485 19 488 1.9E-173 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 22 475 46.781 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT55_RS09340 28e398293b80aed2684c35c40abbe400 493 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 23 474 1.4E-163 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 SUPERFAMILY SSF51735 4 211 6.83E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 Gene3D G3DSA:3.40.50.720 5 212 5.5E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 2.8E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.8E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 2.8E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.8E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 2.8E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09240 94e1b6decf798e4cbae2dbd99c35b93f 253 Pfam PF00106 short chain dehydrogenase 7 191 1.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 106 125 2.1E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 250 272 2.1E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 297 311 2.1E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 373 386 2.1E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 312 326 2.1E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 SUPERFAMILY SSF56601 92 417 1.71E-53 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 233 411 1.6E-27 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 82 186 7.2E-20 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS20235 91133904c5284d64eadf33d771168b8a 445 Gene3D G3DSA:3.40.710.10 206 419 3.2E-38 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS24105 9dd0001160d9337ac2d4becaccf5adff 350 SUPERFAMILY SSF50685 248 339 2.44E-15 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS24105 9dd0001160d9337ac2d4becaccf5adff 350 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 254 343 5.8E-45 T 06-07-2017 IPR012997 Rare lipoprotein A APT55_RS24105 9dd0001160d9337ac2d4becaccf5adff 350 Gene3D G3DSA:2.40.40.10 289 343 2.2E-5 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS24105 9dd0001160d9337ac2d4becaccf5adff 350 Pfam PF03330 Lytic transglycolase 252 340 3.5E-25 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 Gene3D G3DSA:3.40.50.720 2 161 5.9E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 SUPERFAMILY SSF51735 2 161 1.28E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 SUPERFAMILY SSF48179 162 284 2.61E-24 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 157 7.6E-34 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 163 282 8.7E-15 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 Gene3D G3DSA:1.10.1040.10 163 284 2.5E-23 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS26520 de469f8a6da67e80ae13b3c3ea9b1ad3 292 PIRSF PIRSF000103 1 290 1.9E-75 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Pfam PF00732 GMC oxidoreductase 201 283 2.2E-4 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 SUPERFAMILY SSF51905 30 282 1.78E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 SUPERFAMILY SSF51905 487 549 1.78E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Pfam PF05199 GMC oxidoreductase 413 540 7.0E-22 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Gene3D G3DSA:3.50.50.60 481 546 7.3E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Gene3D G3DSA:3.50.50.60 31 142 7.3E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Gene3D G3DSA:3.50.50.60 177 284 7.3E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13320 f852200fcf844a0c70874130d989dce4 565 Gene3D G3DSA:3.50.50.60 434 435 7.3E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 60 154 2.2E-18 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 168 373 1.4E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 SUPERFAMILY SSF56601 34 381 1.26E-51 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 260 274 4.4E-12 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 213 235 4.4E-12 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 337 350 4.4E-12 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 72 91 4.4E-12 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 Gene3D G3DSA:3.40.710.10 62 111 9.9E-39 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS08680 9a2f08f804a33d5b736a4ab8689ff18f 411 Gene3D G3DSA:3.40.710.10 208 381 9.9E-39 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 460 1.8E-101 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 Gene3D G3DSA:3.40.190.10 159 308 2.4E-45 T 06-07-2017 APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 SUPERFAMILY SSF53850 36 535 9.95E-139 T 06-07-2017 APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 85 107 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 PIRSF PIRSF002741 5 539 2.4E-124 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT55_RS11880 03f5b268ab49b6542cf543041e4a7844 540 Gene3D G3DSA:3.10.105.10 309 510 7.3E-58 T 06-07-2017 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Pfam PF00512 His Kinase A (phospho-acceptor) domain 195 254 3.0E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Pfam PF13185 GAF domain 41 152 1.3E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SMART SM00387 300 407 8.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Gene3D G3DSA:3.30.450.40 20 167 4.5E-16 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Gene3D G3DSA:3.30.565.10 245 405 3.0E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SMART SM00065 22 161 1.5E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SUPERFAMILY SSF55874 264 404 1.18E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SMART SM00388 193 258 8.2E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 353 6.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 386 6.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 404 6.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SUPERFAMILY SSF47384 188 255 4.51E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Gene3D G3DSA:1.10.287.130 188 244 3.3E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 SUPERFAMILY SSF55781 22 162 2.18E-18 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28265 9b077fdb9c5c6ed912a3dc1d367ff40c 407 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 405 1.5E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 PIRSF PIRSF001435 6 218 3.7E-38 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 SMART SM00478 47 194 2.1E-35 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 SUPERFAMILY SSF48150 13 214 2.67E-56 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 43 173 2.0E-16 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 Gene3D G3DSA:1.10.1670.10 132 214 1.5E-29 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT55_RS25875 ab6a7a6abea15d5c81bc7c388ec03187 218 Gene3D G3DSA:1.10.340.30 33 131 4.5E-24 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 Pfam PF05226 CHASE2 domain 15 333 6.7E-48 T 06-07-2017 IPR007890 CHASE2 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 SMART SM01080 27 336 1.4E-56 T 06-07-2017 IPR007890 CHASE2 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 SMART SM00387 554 665 2.3E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 Pfam PF00512 His Kinase A (phospho-acceptor) domain 441 506 1.7E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 SUPERFAMILY SSF55874 496 661 2.49E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 Gene3D G3DSA:3.30.565.10 510 663 1.7E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 Gene3D G3DSA:1.10.287.130 433 503 3.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 SUPERFAMILY SSF47384 427 507 1.28E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 SMART SM00388 441 507 1.1E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 663 3.6E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 605 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 619 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 662 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08310 cc208953b6dd1d5e1d6dee4af72f44b3 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 643 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SMART SM00448 4 116 3.7E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SUPERFAMILY SSF47384 128 211 3.14E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SMART SM00387 256 366 6.9E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Gene3D G3DSA:3.30.565.10 194 369 9.0E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Gene3D G3DSA:1.10.287.130 133 193 4.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Pfam PF00072 Response regulator receiver domain 6 116 6.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 257 365 4.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 363 1.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 321 1.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 293 307 1.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 344 1.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SMART SM00388 142 210 7.5E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SUPERFAMILY SSF55874 200 371 3.41E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 SUPERFAMILY SSF52172 1 137 7.97E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Gene3D G3DSA:3.40.50.2300 2 127 1.2E-35 T 06-07-2017 APT55_RS04885 5a5370d31640450b21dd2483196f9496 376 Pfam PF00512 His Kinase A (phospho-acceptor) domain 143 210 1.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 SUPERFAMILY SSF50969 50 278 5.1E-7 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 Pfam PF01345 Domain of unknown function DUF11 306 357 1.2E-10 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 Pfam PF01345 Domain of unknown function DUF11 436 499 2.8E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 318 362 9.1E-14 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 459 502 3.5E-10 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17230 e32ce5c83ef2119b54634cf15ab8bf9e 1420 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1282 1321 2.0E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS25165 0d71781d50b71bb46a73a7454ae3467f 184 SUPERFAMILY SSF46689 10 69 3.19E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25165 0d71781d50b71bb46a73a7454ae3467f 184 SUPERFAMILY SSF48498 73 177 4.94E-11 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS25165 0d71781d50b71bb46a73a7454ae3467f 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 53 5.6E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS25165 0d71781d50b71bb46a73a7454ae3467f 184 Gene3D G3DSA:1.10.357.10 11 174 9.1E-25 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 208 215 - T 06-07-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 Gene3D G3DSA:1.10.287.990 61 131 1.2E-30 T 06-07-2017 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 SUPERFAMILY SSF46609 41 132 7.59E-36 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 SUPERFAMILY SSF54719 134 246 2.36E-46 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PIRSF PIRSF000349 19 248 1.6E-90 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 138 241 2.6E-43 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 45 131 1.2E-29 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PRINTS PR01703 Manganese superoxide dismutase signature 47 58 2.6E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PRINTS PR01703 Manganese superoxide dismutase signature 167 175 2.6E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PRINTS PR01703 Manganese superoxide dismutase signature 114 127 2.6E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PRINTS PR01703 Manganese superoxide dismutase signature 206 218 2.6E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS24490 06b29cd8ddeef012bbbfca3c9658eb0f 248 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 2.6E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 SUPERFAMILY SSF51971 151 419 7.89E-64 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 153 474 4.7E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 492 2.1E-245 T 06-07-2017 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 PRINTS PR00419 Adrenodoxin reductase family signature 220 230 3.5E-24 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 3.5E-24 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 PRINTS PR00419 Adrenodoxin reductase family signature 154 176 3.5E-24 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 PRINTS PR00419 Adrenodoxin reductase family signature 177 190 3.5E-24 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Gene3D G3DSA:3.40.50.720 156 243 8.7E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Gene3D G3DSA:3.40.50.720 421 490 8.7E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 SUPERFAMILY SSF46548 2 163 3.45E-35 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 139 1.3E-19 T 06-07-2017 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Gene3D G3DSA:1.10.1060.10 3 155 9.7E-38 T 06-07-2017 APT55_RS18570 991026f813b9aa682ae435a083e244ff 492 Gene3D G3DSA:3.50.50.60 244 419 1.3E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS31570 d3fc8f9be9a00234e8efb464b499d10f 816 SUPERFAMILY SSF52540 254 322 3.83E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31570 d3fc8f9be9a00234e8efb464b499d10f 816 SUPERFAMILY SSF52540 174 216 3.83E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31570 d3fc8f9be9a00234e8efb464b499d10f 816 Gene3D G3DSA:3.40.50.300 253 320 8.4E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31570 d3fc8f9be9a00234e8efb464b499d10f 816 Gene3D G3DSA:3.40.50.300 151 215 8.4E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31570 d3fc8f9be9a00234e8efb464b499d10f 816 Pfam PF05729 NACHT domain 179 352 1.8E-11 T 06-07-2017 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 Gene3D G3DSA:2.60.15.10 1 88 1.9E-31 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 132 6.5E-41 T 06-07-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 1 131 25.154 T 06-07-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 85 133 2.0E-10 T 06-07-2017 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 3 81 2.3E-28 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 87 1.0E-30 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS22750 dbc230bf5286a681f7799c0a9238f073 136 SUPERFAMILY SSF51344 1 83 6.28E-25 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 101 203 1.8E-7 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 17 204 6.2E-20 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 Gene3D G3DSA:3.40.50.1000 14 28 6.1E-26 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 Gene3D G3DSA:3.40.50.1000 119 233 6.1E-26 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 122 204 7.5E-14 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS06500 45fd83c057092be78fc7431dedbd89c2 240 SUPERFAMILY SSF56784 11 234 2.33E-30 T 06-07-2017 IPR023214 HAD-like domain APT55_RS28605 c1b7d74a3271d8162ddb44975ee34ead 90 Pfam PF03400 IS1 transposase 3 78 6.6E-10 T 06-07-2017 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 SMART SM00387 30 175 1.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Gene3D G3DSA:3.30.565.10 5 215 4.0E-90 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 SUPERFAMILY SSF55874 4 213 2.62E-70 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 ProSitePatterns PS00177 DNA topoisomerase II signature. 425 433 - T 06-07-2017 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 640 0.0 T 06-07-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 1.7E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 570 586 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 271 284 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 34 49 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 69 82 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 490 506 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 508 525 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 112 126 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 423 437 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR00418 DNA topoisomerase II family signature 528 540 3.4E-68 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Gene3D G3DSA:3.40.50.670 407 619 2.5E-98 T 06-07-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Pfam PF01751 Toprim domain 422 523 8.0E-18 T 06-07-2017 IPR006171 Toprim domain APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 SMART SM00433 34 631 0.0 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 473 482 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 196 209 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 222 244 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 315 331 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 363 377 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 607 623 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 181 196 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 5 15 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 591 603 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 PRINTS PR01159 DNA gyrase subunit B signature 377 397 2.2E-66 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Gene3D G3DSA:3.30.230.10 222 395 4.6E-68 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Pfam PF00204 DNA gyrase B 223 393 1.2E-59 T 06-07-2017 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 566 627 3.2E-30 T 06-07-2017 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 640 86.485 T 06-07-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 SUPERFAMILY SSF56719 397 632 4.18E-90 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT55_RS17940 4e62b45ed7168468589579126592b5e3 640 SUPERFAMILY SSF54211 223 394 1.02E-54 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS22915 8d280b79b6de7e63da6869007b732e22 254 SUPERFAMILY SSF52540 5 251 7.74E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22915 8d280b79b6de7e63da6869007b732e22 254 SMART SM00382 31 229 2.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22915 8d280b79b6de7e63da6869007b732e22 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 6.2E-10 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT55_RS22915 8d280b79b6de7e63da6869007b732e22 254 Gene3D G3DSA:3.40.50.300 3 250 4.5E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22915 8d280b79b6de7e63da6869007b732e22 254 Pfam PF00005 ABC transporter 23 180 5.0E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 Pfam PF13409 Glutathione S-transferase, N-terminal domain 57 153 4.6E-22 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 SUPERFAMILY SSF52833 32 156 5.59E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 Gene3D G3DSA:3.40.30.10 29 167 6.6E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 Gene3D G3DSA:1.20.1050.10 168 282 1.4E-27 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 SUPERFAMILY SSF47616 169 318 3.41E-39 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 Pfam PF13410 Glutathione S-transferase, C-terminal domain 198 269 1.6E-13 T 06-07-2017 APT55_RS13135 e69c0805c195d7112b2a7bda0da3d9de 321 PIRSF PIRSF015753 5 318 7.7E-137 T 06-07-2017 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 APT55_RS09185 cc3e57e85718595327a25acee063a2da 135 SUPERFAMILY SSF54211 9 135 5.69E-44 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS09185 cc3e57e85718595327a25acee063a2da 135 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 5 135 34.431 T 06-07-2017 IPR023035 Ribosomal protein S9, bacterial/plastid APT55_RS09185 cc3e57e85718595327a25acee063a2da 135 Pfam PF00380 Ribosomal protein S9/S16 14 135 4.4E-42 T 06-07-2017 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 APT55_RS09185 cc3e57e85718595327a25acee063a2da 135 Gene3D G3DSA:3.30.230.10 9 135 3.2E-48 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS09185 cc3e57e85718595327a25acee063a2da 135 ProSitePatterns PS00360 Ribosomal protein S9 signature. 74 92 - T 06-07-2017 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF08448 PAS fold 48 143 2.4E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF55781 441 610 9.16E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 283 8.2E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 49 145 8.8E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF08447 PAS fold 184 270 6.1E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:3.30.450.40 273 441 1.7E-12 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:3.30.450.40 442 618 2.0E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF55785 148 273 2.99E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00065 294 441 0.0016 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00065 462 612 4.1E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 785 897 9.1E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF55785 48 142 3.89E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF47384 705 736 3.34E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF47384 634 675 3.34E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00388 640 737 9.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:3.30.565.10 735 900 1.3E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:3.30.450.20 47 141 5.3E-12 T 06-07-2017 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00086 101 142 7.9 T 06-07-2017 IPR001610 PAC motif APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00086 234 276 6.7 T 06-07-2017 IPR001610 PAC motif APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 859 877 2.2E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 856 2.2E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 842 2.2E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 884 897 2.2E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF00512 His Kinase A (phospho-acceptor) domain 640 736 5.0E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF01590 GAF domain 462 602 1.2E-16 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Pfam PF01590 GAF domain 296 430 2.3E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:3.30.450.20 148 272 2.1E-26 T 06-07-2017 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:1.10.287.130 635 666 7.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 Gene3D G3DSA:1.10.287.130 704 733 7.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF55874 724 900 7.2E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00387 782 900 2.0E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SUPERFAMILY SSF55781 296 443 2.94E-13 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10065 03ceb769c57b188729f6ac36ffde802c 905 SMART SM00091 161 227 1.4E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 SUPERFAMILY SSF160240 215 287 1.31E-16 T 06-07-2017 APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 SUPERFAMILY SSF161111 6 208 8.5E-55 T 06-07-2017 APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 Pfam PF16916 Dimerisation domain of Zinc Transporter 215 285 4.7E-19 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 Gene3D G3DSA:1.20.1510.10 10 206 1.4E-49 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 286 1.6E-68 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 Gene3D G3DSA:3.30.70.1350 215 286 5.8E-21 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain APT55_RS07725 2a60ed027cf67f8322799a971556c584 297 Pfam PF01545 Cation efflux family 13 205 6.8E-43 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SUPERFAMILY SSF50249 116 187 4.85E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 PRINTS PR00681 Ribosomal protein S1 signature 32 50 5.9E-16 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 PRINTS PR00681 Ribosomal protein S1 signature 50 64 5.9E-16 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 PRINTS PR00681 Ribosomal protein S1 signature 98 117 5.9E-16 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 PRINTS PR00681 Ribosomal protein S1 signature 122 138 5.9E-16 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 PRINTS PR00681 Ribosomal protein S1 signature 217 238 5.9E-16 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Gene3D G3DSA:2.40.50.140 188 270 8.4E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SUPERFAMILY SSF50249 194 275 3.66E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SMART SM00316 195 265 2.0E-26 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SMART SM00316 117 183 1.1E-10 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SMART SM00316 30 101 2.4E-13 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Gene3D G3DSA:2.40.50.140 108 184 1.6E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Gene3D G3DSA:2.40.50.140 28 102 1.9E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Pfam PF00575 S1 RNA binding domain 117 183 5.5E-13 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Pfam PF00575 S1 RNA binding domain 31 101 1.4E-9 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 Pfam PF00575 S1 RNA binding domain 194 265 3.5E-21 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS06495 c69a9ffe33bce6a807213c6c1764ae54 333 SUPERFAMILY SSF50249 27 126 2.34E-18 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS28785 d522cae91eaa7bbbc80b727f0563350e 136 Gene3D G3DSA:3.10.180.10 7 134 2.8E-42 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS28785 d522cae91eaa7bbbc80b727f0563350e 136 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 130 5.0E-10 T 06-07-2017 IPR028973 PhnB-like APT55_RS28785 d522cae91eaa7bbbc80b727f0563350e 136 SUPERFAMILY SSF54593 1 133 1.1E-36 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SUPERFAMILY SSF55781 26 167 1.44E-27 T 06-07-2017 IPR029016 GAF domain-like APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SMART SM00388 338 403 5.7E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Pfam PF01590 GAF domain 26 155 2.0E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SMART SM00091 212 278 7.1E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Gene3D G3DSA:3.30.450.20 211 341 9.1E-32 T 06-07-2017 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Gene3D G3DSA:3.30.565.10 390 551 1.3E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 536 549 4.7E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 497 4.7E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 511 4.7E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 530 4.7E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SUPERFAMILY SSF47384 327 401 1.79E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Pfam PF00512 His Kinase A (phospho-acceptor) domain 340 401 6.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 446 551 3.9E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Gene3D G3DSA:3.30.450.40 8 171 8.6E-25 T 06-07-2017 IPR029016 GAF domain-like APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SUPERFAMILY SSF55874 392 550 5.89E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SMART SM00065 24 165 4.5E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SUPERFAMILY SSF55785 217 329 1.8E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 SMART SM00387 445 552 1.6E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Pfam PF08447 PAS fold 236 319 3.8E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 Gene3D G3DSA:1.10.287.130 342 389 1.6E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27080 aa30fb2f235dda6e8ac39499ad173cb9 552 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 209 333 5.6E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 Pfam PF05050 Methyltransferase FkbM domain 42 248 1.8E-21 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 Gene3D G3DSA:3.40.50.150 174 251 7.6E-32 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 Gene3D G3DSA:3.40.50.150 33 128 7.6E-32 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 SUPERFAMILY SSF53335 21 123 3.61E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 SUPERFAMILY SSF53335 174 262 3.61E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17585 df83301ed2d65f2f542be0e81b7cd1f5 270 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 40 229 4.6E-28 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.362 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 Gene3D G3DSA:3.90.1170.10 22 136 3.9E-56 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 06-07-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 PRINTS PR00060 Ribosomal protein L16 signature 58 87 5.4E-41 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 PRINTS PR00060 Ribosomal protein L16 signature 42 53 5.4E-41 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 PRINTS PR00060 Ribosomal protein L16 signature 24 36 5.4E-41 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 PRINTS PR00060 Ribosomal protein L16 signature 88 117 5.4E-41 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.6E-52 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 06-07-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 SUPERFAMILY SSF54686 1 135 8.24E-59 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 APT55_RS24740 83d531661145b2f3b08d916e476a5289 142 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 4.5E-64 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07030 14919e5d91b12056a18635b4f1ec981e 239 SUPERFAMILY SSF50090 1 237 1.45E-65 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain APT55_RS07030 14919e5d91b12056a18635b4f1ec981e 239 Gene3D G3DSA:1.10.472.20 1 153 8.4E-38 T 06-07-2017 APT55_RS07030 14919e5d91b12056a18635b4f1ec981e 239 Pfam PF02211 Nitrile hydratase beta subunit 1 236 6.7E-77 T 06-07-2017 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07030 14919e5d91b12056a18635b4f1ec981e 239 Gene3D G3DSA:2.30.30.50 154 236 3.1E-23 T 06-07-2017 APT55_RS07030 14919e5d91b12056a18635b4f1ec981e 239 TIGRFAM TIGR03888 nitrile_beta: nitrile hydratase, beta subunit 1 236 5.7E-63 T 06-07-2017 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 128 142 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 Gene3D G3DSA:3.40.50.1980 44 179 1.3E-50 T 06-07-2017 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 Gene3D G3DSA:3.40.50.1980 180 290 2.5E-46 T 06-07-2017 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 62 69 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 44 439 6.6E-112 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 SUPERFAMILY SSF53807 13 454 7.01E-148 T 06-07-2017 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 Gene3D G3DSA:3.40.50.1980 318 455 7.8E-53 T 06-07-2017 APT55_RS11660 cfbc29f6e64d31ed36957a36484b551e 461 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 5 453 4.9E-213 T 06-07-2017 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SUPERFAMILY SSF52172 611 743 5.12E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Pfam PF00512 His Kinase A (phospho-acceptor) domain 348 412 1.2E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SMART SM00387 460 587 6.9E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 461 585 1.4E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Gene3D G3DSA:3.40.50.2300 607 731 4.2E-35 T 06-07-2017 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Gene3D G3DSA:1.10.287.130 344 409 3.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Pfam PF00072 Response regulator receiver domain 613 724 5.0E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Gene3D G3DSA:3.30.565.10 414 586 2.3E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SUPERFAMILY SSF55874 402 583 1.83E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 565 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 527 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 584 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 541 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SMART SM00448 611 724 1.2E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 Pfam PF05231 MASE1 43 310 6.8E-36 T 06-07-2017 IPR007895 MASE1 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SMART SM00388 348 413 9.7E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24450 6b97b88938510713aecbc68dc2164883 823 SUPERFAMILY SSF47384 335 414 1.65E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23190 871394d48bd37d9dd3299927b6494b23 239 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 96 103 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS23190 871394d48bd37d9dd3299927b6494b23 239 SUPERFAMILY SSF53056 38 238 1.13E-54 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS23190 871394d48bd37d9dd3299927b6494b23 239 Pfam PF00484 Carbonic anhydrase 93 234 2.9E-35 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS23190 871394d48bd37d9dd3299927b6494b23 239 Gene3D G3DSA:3.40.1050.10 39 236 1.2E-54 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS23190 871394d48bd37d9dd3299927b6494b23 239 SMART SM00947 84 239 4.1E-48 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 SUPERFAMILY SSF47413 42 86 5.63E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 Pfam PF14516 AAA-like domain 118 446 1.0E-114 T 06-07-2017 APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 Gene3D G3DSA:3.40.50.300 141 303 6.8E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 SUPERFAMILY SSF52540 139 366 1.31E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 Gene3D G3DSA:1.10.260.40 54 86 3.0E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS27040 9fae279893b49c2682c66a1c8ffe1f12 451 Gene3D G3DSA:1.10.10.10 21 53 3.0E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SUPERFAMILY SSF48452 361 534 4.43E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Gene3D G3DSA:1.25.40.10 277 405 3.2E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Gene3D G3DSA:1.25.40.10 60 276 1.6E-36 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Gene3D G3DSA:1.25.40.10 406 536 1.0E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SUPERFAMILY SSF48452 213 374 3.41E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SUPERFAMILY SSF48452 60 204 6.73E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF13424 Tetratricopeptide repeat 101 173 2.5E-9 T 06-07-2017 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF13424 Tetratricopeptide repeat 220 291 2.8E-15 T 06-07-2017 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF13424 Tetratricopeptide repeat 302 373 6.5E-13 T 06-07-2017 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF13424 Tetratricopeptide repeat 381 453 1.5E-12 T 06-07-2017 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 381 414 0.024 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 61 94 3.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 261 294 11.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 461 494 0.007 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 301 334 0.0013 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 101 134 0.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 221 254 9.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 181 214 180.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 141 174 1.6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 421 454 5.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 SMART SM00028 341 374 0.027 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF12770 CHAT domain 660 934 1.1E-77 T 06-07-2017 IPR024983 CHAT domain APT55_RS24885 8e7537215c1d963f4b09c91147edd46c 936 Pfam PF13181 Tetratricopeptide repeat 461 488 0.067 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 15 432 2.7E-165 T 06-07-2017 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 134 432 1.3E-56 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 Gene3D G3DSA:2.30.30.230 15 130 3.2E-34 T 06-07-2017 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 SUPERFAMILY SSF63433 14 128 5.23E-28 T 06-07-2017 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 Gene3D G3DSA:3.90.850.10 131 428 1.4E-102 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 Pfam PF09298 Fumarylacetoacetase N-terminal 30 128 1.6E-22 T 06-07-2017 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT55_RS03525 ac8cd1e4125e788c4a1db00dcb8d39cc 435 SUPERFAMILY SSF56529 131 432 4.12E-88 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 APT55_RS12705 78662118ff174b110cd5f83e57144541 351 Gene3D G3DSA:3.30.360.10 144 326 3.6E-38 T 06-07-2017 APT55_RS12705 78662118ff174b110cd5f83e57144541 351 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 243 1.1E-10 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS12705 78662118ff174b110cd5f83e57144541 351 SUPERFAMILY SSF51735 3 153 1.06E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12705 78662118ff174b110cd5f83e57144541 351 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 4.2E-28 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS12705 78662118ff174b110cd5f83e57144541 351 SUPERFAMILY SSF55347 131 260 1.14E-26 T 06-07-2017 APT55_RS12705 78662118ff174b110cd5f83e57144541 351 Gene3D G3DSA:3.40.50.720 1 143 5.5E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13095 64b4986e0cb69eb182a56ffd82da06f3 565 Pfam PF04966 Carbohydrate-selective porin, OprB family 142 565 1.9E-48 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS13095 64b4986e0cb69eb182a56ffd82da06f3 565 Pfam PF00395 S-layer homology domain 76 118 2.0E-9 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 SMART SM00642 6 403 6.4E-59 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 Gene3D G3DSA:2.60.40.1180 408 490 2.5E-30 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 Gene3D G3DSA:3.20.20.80 4 407 3.0E-76 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 SUPERFAMILY SSF51011 405 491 1.09E-32 T 06-07-2017 APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 PIRSF PIRSF001021 1 492 3.0E-211 T 06-07-2017 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 Pfam PF00128 Alpha amylase, catalytic domain 33 368 3.5E-27 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS10500 4bb9c016b282aa200adec742934cc8a9 492 SUPERFAMILY SSF51445 7 372 8.45E-103 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 Pfam PF00672 HAMP domain 460 524 4.9E-7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 Gene3D G3DSA:1.10.287.950 626 843 4.2E-50 T 06-07-2017 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 SUPERFAMILY SSF58104 573 873 5.89E-66 T 06-07-2017 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 SMART SM00283 611 872 5.0E-87 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 Gene3D G3DSA:1.25.40.10 7 82 6.2E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 656 871 5.3E-43 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 SUPERFAMILY SSF48452 11 88 2.25E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 SMART SM00304 545 596 0.0069 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS02650 a87fb7ab9c27aa85ca52fbbb0d7ab7e0 879 SMART SM00304 479 531 5.2E-4 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 Pfam PF00072 Response regulator receiver domain 8 112 4.5E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 228 2.7E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 SUPERFAMILY SSF52172 4 186 3.83E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 Gene3D G3DSA:3.40.50.2300 3 128 9.1E-39 T 06-07-2017 APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 SMART SM00862 152 228 3.4E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 Gene3D G3DSA:1.10.10.10 130 231 3.1E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13220 7d3b0d252256d03395681f518d88d270 235 SMART SM00448 6 116 1.0E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 Pfam PF00107 Zinc-binding dehydrogenase 196 265 5.4E-16 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 152 1.2E-30 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 Gene3D G3DSA:3.90.180.10 1 192 5.8E-56 T 06-07-2017 IPR011032 GroES-like APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 Gene3D G3DSA:3.40.50.720 193 331 1.7E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 SUPERFAMILY SSF51735 163 351 1.06E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 SUPERFAMILY SSF50129 1 201 3.2E-63 T 06-07-2017 IPR011032 GroES-like APT55_RS23185 2956423819fc1695de396ae3c78e9b6d 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 8.2E-12 T 06-07-2017 IPR027399 Alcohol dehydrogenase GroES-associated APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 Pfam PF05729 NACHT domain 249 397 2.4E-17 T 06-07-2017 APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 SUPERFAMILY SSF52540 246 414 1.66E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 Gene3D G3DSA:3.40.50.300 245 359 1.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 Pfam PF13676 TIR domain 6 114 1.6E-18 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 SUPERFAMILY SSF52200 4 143 1.01E-16 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 SMART SM00255 2 138 1.5E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05825 0c06e18ad0a24b435afb25457d3cce3c 841 Gene3D G3DSA:3.40.50.10140 5 109 1.4E-9 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05035 788645d06e35d184486097be9373e381 394 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 66 187 1.3E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS05035 788645d06e35d184486097be9373e381 394 Gene3D G3DSA:3.30.450.20 66 179 2.4E-27 T 06-07-2017 APT55_RS05035 788645d06e35d184486097be9373e381 394 SUPERFAMILY SSF55785 76 183 1.77E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS05035 788645d06e35d184486097be9373e381 394 Pfam PF07568 Histidine kinase 201 276 1.1E-30 T 06-07-2017 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain APT55_RS05035 788645d06e35d184486097be9373e381 394 Gene3D G3DSA:3.30.565.10 254 392 4.2E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05035 788645d06e35d184486097be9373e381 394 Pfam PF08447 PAS fold 91 174 3.5E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS05035 788645d06e35d184486097be9373e381 394 SMART SM00091 67 133 2.5E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS05035 788645d06e35d184486097be9373e381 394 SMART SM00387 298 394 3.2E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05035 788645d06e35d184486097be9373e381 394 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 304 391 4.0E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05035 788645d06e35d184486097be9373e381 394 SUPERFAMILY SSF55874 264 390 2.6E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Gene3D G3DSA:3.30.565.10 755 898 5.9E-9 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SUPERFAMILY SSF55781 33 178 1.02E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Gene3D G3DSA:3.30.450.40 345 523 4.4E-13 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SUPERFAMILY SSF55781 355 517 2.09E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Gene3D G3DSA:3.30.450.40 16 160 9.4E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Gene3D G3DSA:3.30.450.40 194 337 2.9E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Pfam PF01590 GAF domain 371 509 7.5E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 Pfam PF13492 GAF domain 201 337 1.3E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SMART SM00065 370 519 4.9E-10 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SMART SM00065 27 178 0.032 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SMART SM00065 199 349 8.5E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SUPERFAMILY SSF55874 755 898 1.51E-8 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24595 eeda29ea2fe025a4ca1ee3082fc349da 909 SUPERFAMILY SSF55781 201 337 4.8E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 SUPERFAMILY SSF53383 7 430 4.87E-134 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 10 431 1.7E-184 T 06-07-2017 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 10 432 103.565 T 06-07-2017 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 241 277 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 Gene3D G3DSA:3.40.640.10 77 323 4.3E-83 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 Pfam PF00202 Aminotransferase class-III 40 425 1.1E-72 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 Gene3D G3DSA:3.90.1150.10 326 430 8.5E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS01510 8bb48aaeaf14757a35233d4a969f4402 432 Gene3D G3DSA:3.90.1150.10 7 76 8.5E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS07080 90259582f93de959ec5a99154b02c373 510 SUPERFAMILY SSF53850 151 376 4.5E-38 T 06-07-2017 APT55_RS07080 90259582f93de959ec5a99154b02c373 510 Pfam PF13379 NMT1-like family 150 385 2.1E-67 T 06-07-2017 APT55_RS07080 90259582f93de959ec5a99154b02c373 510 Gene3D G3DSA:3.40.190.10 242 363 2.8E-16 T 06-07-2017 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 Pfam PF00238 Ribosomal protein L14p/L23e 1 121 2.0E-54 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 Gene3D G3DSA:2.40.150.20 1 121 2.1E-54 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 SUPERFAMILY SSF50193 1 121 3.27E-53 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 121 28.438 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 SMART SM01374 1 121 3.4E-84 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 ProSitePatterns PS00049 Ribosomal protein L14 signature. 59 85 - T 06-07-2017 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24755 533b1f0216eaa219e569ec19a69dcdda 121 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 121 1.4E-56 T 06-07-2017 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 231 328 1.4E-14 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Gene3D G3DSA:1.10.540.10 90 228 3.4E-28 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 SUPERFAMILY SSF47203 351 507 4.83E-26 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 233 245 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 SUPERFAMILY SSF56645 92 361 1.57E-46 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Pfam PF09317 Domain of unknown function (DUF1974) 505 784 4.8E-93 T 06-07-2017 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 119 227 1.3E-19 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Gene3D G3DSA:1.20.140.10 340 497 1.5E-28 T 06-07-2017 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Gene3D G3DSA:2.40.110.10 231 339 1.5E-17 T 06-07-2017 APT55_RS03480 1a9106e688f65801cf4603fb1738cd84 809 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 351 492 2.7E-16 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.40.50.2300 1883 2004 9.3E-31 T 06-07-2017 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1630 1694 2.2E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.30.200.20 7 115 2.0E-12 T 06-07-2017 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:1.10.510.10 116 271 1.2E-39 T 06-07-2017 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF08447 PAS fold 1510 1597 1.2E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1824 1842 3.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1789 1803 3.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1807 1817 3.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1849 1862 3.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF55785 1495 1605 5.41E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:1.10.287.130 1622 1691 8.2E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF55781 1315 1494 4.14E-26 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF13191 AAA ATPase domain 298 484 4.3E-45 T 06-07-2017 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF00069 Protein kinase domain 13 256 1.4E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF00072 Response regulator receiver domain 1887 2000 2.7E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 124 136 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00448 1885 2000 3.4E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00387 1741 1865 3.2E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.30.450.40 1317 1477 6.4E-33 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1741 1863 2.0E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1484 1609 2.3E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Pfam PF13185 GAF domain 1328 1474 7.3E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF55874 1684 1867 1.57E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF56112 5 274 4.72E-56 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00086 1561 1603 2.4E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00065 1327 1483 3.5E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF47384 1618 1696 2.75E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF52172 1883 2003 1.21E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SUPERFAMILY SSF52540 295 573 1.75E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.30.450.20 1478 1618 3.6E-27 T 06-07-2017 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00091 1487 1555 4.9E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:1.25.40.10 757 856 7.4E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:1.25.40.10 1103 1238 7.4E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.40.50.300 296 488 2.7E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00388 1629 1695 5.0E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 SMART SM00220 8 270 8.5E-32 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30955 82d64f7e884475451bb86874c47b0aee 2006 Gene3D G3DSA:3.30.565.10 1696 1864 4.0E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03650 e02e4a37aba768c58e97fe7fa5d1c797 84 Pfam PF00550 Phosphopantetheine attachment site 25 78 8.1E-8 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS03650 e02e4a37aba768c58e97fe7fa5d1c797 84 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 39 80 0.001 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03650 e02e4a37aba768c58e97fe7fa5d1c797 84 Gene3D G3DSA:1.10.1200.10 3 81 7.6E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS03650 e02e4a37aba768c58e97fe7fa5d1c797 84 SUPERFAMILY SSF47336 3 81 3.14E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 Pfam PF00072 Response regulator receiver domain 3 114 7.6E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 6.8E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 Gene3D G3DSA:3.40.50.2300 1 122 1.3E-36 T 06-07-2017 APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 Gene3D G3DSA:1.10.10.10 125 228 3.5E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 SMART SM00862 150 225 2.4E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 SMART SM00448 1 114 6.1E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23430 a56bc8f6b47ddc2368d6a478c14f255f 229 SUPERFAMILY SSF52172 1 179 2.64E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 SUPERFAMILY SSF55961 175 390 4.63E-31 T 06-07-2017 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 Pfam PF00355 Rieske [2Fe-2S] domain 53 146 8.7E-18 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 195 393 9.4E-25 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 SUPERFAMILY SSF50022 22 172 1.7E-46 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 Gene3D G3DSA:2.102.10.10 52 165 1.4E-34 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 38 63 1.5E-17 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 115 135 1.5E-17 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 156 182 1.5E-17 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 193 215 1.5E-17 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 APT55_RS17930 ceb36615c9fd8f95107c25213c4067f3 398 Gene3D G3DSA:3.90.380.10 166 237 1.8E-16 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Pfam PF05228 CHASE4 domain 65 218 1.6E-36 T 06-07-2017 IPR007892 CHASE4 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 666 3.8E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 687 3.8E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 707 3.8E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 652 3.8E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Gene3D G3DSA:3.30.565.10 530 708 1.5E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Pfam PF00672 HAMP domain 290 358 3.4E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SMART SM00388 435 532 3.1E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SUPERFAMILY SSF55874 531 708 9.43E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SMART SM00387 577 710 5.2E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 580 707 3.2E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SUPERFAMILY SSF47384 500 530 1.73E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SUPERFAMILY SSF47384 420 470 1.73E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 SMART SM00304 309 362 6.2E-5 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Gene3D G3DSA:1.10.287.130 430 461 1.8E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Gene3D G3DSA:1.10.287.130 499 528 1.8E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09300 d5747b355d95134a548680a5c8eb678a 716 Pfam PF00512 His Kinase A (phospho-acceptor) domain 435 531 8.6E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24975 19e3dc65097e6d3e0f731b0ca7b6fc9a 752 SMART SM01080 396 696 4.5E-4 T 06-07-2017 IPR007890 CHASE2 APT55_RS24975 19e3dc65097e6d3e0f731b0ca7b6fc9a 752 Pfam PF12770 CHAT domain 199 321 9.4E-6 T 06-07-2017 IPR024983 CHAT domain APT55_RS24975 19e3dc65097e6d3e0f731b0ca7b6fc9a 752 Pfam PF05226 CHASE2 domain 379 687 1.6E-16 T 06-07-2017 IPR007890 CHASE2 APT55_RS26575 6696c43a06db8b1270d6db89883def43 381 Gene3D G3DSA:3.40.50.720 39 175 3.6E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26575 6696c43a06db8b1270d6db89883def43 381 SUPERFAMILY SSF55347 164 333 9.55E-15 T 06-07-2017 APT55_RS26575 6696c43a06db8b1270d6db89883def43 381 SUPERFAMILY SSF51735 38 175 2.25E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26575 6696c43a06db8b1270d6db89883def43 381 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 43 159 2.3E-30 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS26575 6696c43a06db8b1270d6db89883def43 381 Gene3D G3DSA:3.30.360.10 176 364 1.7E-48 T 06-07-2017 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Gene3D G3DSA:3.30.310.50 403 544 2.7E-63 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 295 408 2.7E-33 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 SUPERFAMILY SSF53738 279 415 4.71E-39 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 153 1.4E-36 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Gene3D G3DSA:3.40.120.10 2 195 6.2E-65 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 SUPERFAMILY SSF53738 2 212 2.43E-49 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 06-07-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 187 287 2.4E-9 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 SUPERFAMILY SSF55957 410 544 7.85E-48 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Gene3D G3DSA:3.40.120.10 196 283 2.2E-37 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 206 225 5.2E-22 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 5.2E-22 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 271 286 5.2E-22 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 255 5.2E-22 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 467 511 5.9E-6 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 Gene3D G3DSA:3.40.120.10 284 402 4.4E-46 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS10470 9175b849c8a11f9ed8911f991e59d084 544 SUPERFAMILY SSF53738 184 293 2.83E-30 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25795 a54205e617e3df97daba794ffccd26cb 240 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 240 126.238 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT55_RS25795 a54205e617e3df97daba794ffccd26cb 240 Gene3D G3DSA:3.20.20.70 3 237 1.2E-105 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS25795 a54205e617e3df97daba794ffccd26cb 240 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 236 1.8E-97 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT55_RS25795 a54205e617e3df97daba794ffccd26cb 240 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 236 6.0E-101 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT55_RS25795 a54205e617e3df97daba794ffccd26cb 240 SUPERFAMILY SSF63892 3 237 1.2E-98 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT55_RS21380 3eaa109e152ad7ab3b7a818e61ee9894 116 Pfam PF08844 Domain of unknown function (DUF1815) 2 99 3.0E-52 T 06-07-2017 IPR014943 Protein of unknown function DUF1815 APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 SUPERFAMILY SSF82829 214 298 2.22E-19 T 06-07-2017 APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 Pfam PF01171 PP-loop family 28 202 5.8E-42 T 06-07-2017 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 Gene3D G3DSA:3.40.50.620 12 185 6.0E-12 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 SUPERFAMILY SSF52402 14 234 2.02E-51 T 06-07-2017 APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 28 205 1.5E-54 T 06-07-2017 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APT55_RS02620 b0088828c8e2f4e35814d3d3fe84fd88 323 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 311 23.618 T 06-07-2017 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 Gene3D G3DSA:2.160.10.10 60 206 2.3E-37 T 06-07-2017 APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 7 166 7.5E-77 T 06-07-2017 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 6.6E-9 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 1.3E-5 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 Gene3D G3DSA:1.10.3130.10 2 59 1.1E-27 T 06-07-2017 APT55_RS26685 1bc0c56bc2b5638a3d01fb8832e02a98 257 SUPERFAMILY SSF51161 5 169 1.08E-54 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 230 2.8E-92 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 242 99.714 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 Gene3D G3DSA:1.10.1270.20 159 225 3.1E-30 T 06-07-2017 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 PIRSF PIRSF000386 1 240 3.4E-89 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 SUPERFAMILY SSF75217 1 229 4.06E-90 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 Gene3D G3DSA:3.40.1280.10 1 157 7.3E-58 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS08130 bb1deff34fa704f042312be966246cbb 242 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 219 9.1E-61 T 06-07-2017 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT55_RS01445 bdd3b2dc9db2bab49e20ee9308279ac3 203 SMART SM00702 7 196 1.9E-19 T 06-07-2017 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 APT55_RS01445 bdd3b2dc9db2bab49e20ee9308279ac3 203 Gene3D G3DSA:2.60.120.620 83 179 1.1E-8 T 06-07-2017 APT55_RS01445 bdd3b2dc9db2bab49e20ee9308279ac3 203 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 91 196 1.3E-18 T 06-07-2017 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 APT55_RS07995 7cee6ed3cda13ed90262c7fb401bd6a4 194 SUPERFAMILY SSF110221 32 121 1.57E-25 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS07995 7cee6ed3cda13ed90262c7fb401bd6a4 194 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 36 125 5.1E-28 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS07995 7cee6ed3cda13ed90262c7fb401bd6a4 194 SUPERFAMILY SSF110221 121 173 2.35E-19 T 06-07-2017 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 APT55_RS07995 7cee6ed3cda13ed90262c7fb401bd6a4 194 Gene3D G3DSA:2.80.10.50 124 172 1.1E-17 T 06-07-2017 APT55_RS07995 7cee6ed3cda13ed90262c7fb401bd6a4 194 Gene3D G3DSA:2.80.10.50 32 123 2.5E-30 T 06-07-2017 APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 Gene3D G3DSA:3.30.565.10 39 162 9.3E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 SMART SM00387 50 163 1.8E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 SUPERFAMILY SSF55874 33 162 4.71E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 51 161 2.9E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 107 117 9.7E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 148 161 9.7E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 89 103 9.7E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09990 2b8d82f70037e1591faae2d662f9bdeb 163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 124 142 9.7E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 975 1010 0.002 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 893 930 2.2E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 1058 1092 1.7E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 1014 1052 5.1E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 857 889 1.5E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF00400 WD domain, G-beta repeat 687 723 7.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SUPERFAMILY SSF50978 584 892 6.1E-55 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 892 931 2.5E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 606 643 15.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 684 723 5.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 645 682 23.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 1095 1134 0.0016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 851 890 9.1E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 1013 1052 1.7E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 569 604 85.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 935 970 39.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 807 845 57.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 725 764 57.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 972 1011 5.7E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SMART SM00320 1054 1093 4.5E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Gene3D G3DSA:2.130.10.10 827 956 9.2E-33 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SUPERFAMILY SSF50978 816 1134 1.98E-66 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Gene3D G3DSA:3.40.50.300 41 180 7.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1039 1053 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Gene3D G3DSA:2.130.10.10 580 826 2.2E-42 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Gene3D G3DSA:2.130.10.10 957 1129 3.4E-52 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 PRINTS PR00320 G protein beta WD-40 repeat signature 710 724 1.7E-5 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 PRINTS PR00320 G protein beta WD-40 repeat signature 1080 1094 1.7E-5 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 PRINTS PR00320 G protein beta WD-40 repeat signature 877 891 1.7E-5 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 SUPERFAMILY SSF52540 25 254 1.38E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31520 0b1d95e8288516f9316be86e5d8f61c8 1171 Pfam PF14516 AAA-like domain 10 354 2.4E-32 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 Pfam PF13533 Biotin-lipoyl like 67 113 2.8E-7 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 Gene3D G3DSA:2.40.50.100 66 98 2.2E-14 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 Gene3D G3DSA:2.40.50.100 306 339 2.2E-14 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 352 376 6.3E-10 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 431 6.3E-10 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 6.3E-10 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 320 341 6.3E-10 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 Pfam PF13437 HlyD family secretion protein 308 419 2.1E-17 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 SUPERFAMILY SSF111369 174 232 1.57E-5 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 SUPERFAMILY SSF111369 248 396 1.15E-9 T 06-07-2017 APT55_RS13530 92d56f71e9dfb44f5eb1414c84a3c350 431 SUPERFAMILY SSF111369 55 173 5.36E-6 T 06-07-2017 APT55_RS26960 d4a7d58aa2e82fb546c5afdd9733ccb7 459 SUPERFAMILY SSF56601 168 419 7.67E-60 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS26960 d4a7d58aa2e82fb546c5afdd9733ccb7 459 Gene3D G3DSA:3.40.710.10 167 421 6.3E-71 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS26960 d4a7d58aa2e82fb546c5afdd9733ccb7 459 Pfam PF13354 Beta-lactamase enzyme family 191 391 5.7E-63 T 06-07-2017 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SUPERFAMILY SSF48452 46 201 3.04E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 Pfam PF13424 Tetratricopeptide repeat 370 440 2.2E-7 T 06-07-2017 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 410 443 380.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 370 403 6.5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 84 117 120.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 207 240 240.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 247 280 43.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 44 77 52.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SMART SM00028 127 160 66.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 Gene3D G3DSA:1.25.40.10 118 343 2.9E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 Gene3D G3DSA:1.25.40.10 352 441 1.8E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 Gene3D G3DSA:1.25.40.10 43 117 2.6E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SUPERFAMILY SSF48452 242 281 2.85E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 SUPERFAMILY SSF48452 359 439 2.85E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03260 e5a597e50f870c6e51bdddbe94301712 844 Pfam PF12770 CHAT domain 578 842 2.0E-64 T 06-07-2017 IPR024983 CHAT domain APT55_RS16450 227c3eb00426855a28d396cc14cf103e 152 Gene3D G3DSA:3.40.50.1010 6 140 1.4E-27 T 06-07-2017 IPR029060 PIN domain-like APT55_RS16450 227c3eb00426855a28d396cc14cf103e 152 SUPERFAMILY SSF88723 6 136 2.27E-19 T 06-07-2017 IPR029060 PIN domain-like APT55_RS16450 227c3eb00426855a28d396cc14cf103e 152 Pfam PF01850 PIN domain 7 128 7.6E-11 T 06-07-2017 IPR002716 PIN domain APT55_RS03840 b277d70ea3d4218601ee4e03ce276f7a 296 SUPERFAMILY SSF103481 189 290 4.45E-5 T 06-07-2017 APT55_RS03840 b277d70ea3d4218601ee4e03ce276f7a 296 TIGRFAM TIGR00688 rarD: protein RarD 12 264 7.2E-64 T 06-07-2017 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 APT55_RS03840 b277d70ea3d4218601ee4e03ce276f7a 296 Pfam PF00892 EamA-like transporter family 12 144 2.4E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS03840 b277d70ea3d4218601ee4e03ce276f7a 296 SUPERFAMILY SSF103481 46 149 9.94E-10 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 8 135 1.9E-53 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 195 209 2.0E-39 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 234 248 2.0E-39 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 2.0E-39 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 305 316 2.0E-39 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 2.0E-39 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 SMART SM01097 6 136 1.6E-92 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00097 Anthranilate synthase component II signature 349 362 8.3E-7 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00097 Anthranilate synthase component II signature 237 246 8.3E-7 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00097 Anthranilate synthase component II signature 265 276 8.3E-7 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 Gene3D G3DSA:3.40.50.880 155 377 6.5E-73 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 Gene3D G3DSA:3.50.30.20 7 150 4.8E-61 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 Pfam PF00117 Glutamine amidotransferase class-I 197 372 1.3E-47 T 06-07-2017 IPR017926 Glutamine amidotransferase APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 1.5E-12 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 1.5E-12 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 237 246 1.5E-12 T 06-07-2017 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 SUPERFAMILY SSF52021 7 153 4.45E-59 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 8 375 6.4E-159 T 06-07-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 SUPERFAMILY SSF52317 158 378 8.38E-58 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS08230 25773cd7b63c6232eabc5fabd74986ea 379 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 6 378 49.799 T 06-07-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 Pfam PF11941 Domain of unknown function (DUF3459) 388 450 1.1E-6 T 06-07-2017 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 SMART SM00642 16 395 7.1E-91 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 Gene3D G3DSA:2.60.40.1180 398 444 4.1E-9 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 SUPERFAMILY SSF51011 404 452 1.49E-6 T 06-07-2017 APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 Pfam PF00128 Alpha amylase, catalytic domain 53 367 7.4E-73 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 Gene3D G3DSA:3.20.20.80 5 396 1.8E-112 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 SUPERFAMILY SSF51445 4 273 2.98E-107 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS05160 2c9ffc77588c2e7d0a598601a8d476e7 475 SUPERFAMILY SSF51445 304 404 2.98E-107 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS23500 a6b478b7423bbaa378313b4fa4a41f61 239 SUPERFAMILY SSF48371 13 91 3.6E-18 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS23500 a6b478b7423bbaa378313b4fa4a41f61 239 Pfam PF16416 ARM-like repeat domain, GUN4-N terminal 11 88 2.6E-19 T 06-07-2017 IPR032192 GUN4, N-terminal ARM-like repeat domain APT55_RS23500 a6b478b7423bbaa378313b4fa4a41f61 239 SUPERFAMILY SSF140869 92 238 4.05E-55 T 06-07-2017 APT55_RS23500 a6b478b7423bbaa378313b4fa4a41f61 239 Pfam PF05419 GUN4-like 95 235 2.1E-59 T 06-07-2017 IPR008629 GUN4-like APT55_RS20065 a96005816757efa8172876d2de6606e8 120 Gene3D G3DSA:3.30.780.10 41 120 2.1E-32 T 06-07-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 APT55_RS20065 a96005816757efa8172876d2de6606e8 120 SUPERFAMILY SSF55159 18 116 3.79E-24 T 06-07-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 APT55_RS20065 a96005816757efa8172876d2de6606e8 120 PIRSF PIRSF037511 4 120 3.8E-39 T 06-07-2017 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 APT55_RS20065 a96005816757efa8172876d2de6606e8 120 Pfam PF01253 Translation initiation factor SUI1 42 113 1.6E-19 T 06-07-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 APT55_RS02035 f5058e130e32e2eb739b440c97b30fd6 98 Pfam PF01386 Ribosomal L25p family 5 93 3.3E-18 T 06-07-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT55_RS02035 f5058e130e32e2eb739b440c97b30fd6 98 Gene3D G3DSA:2.40.240.10 3 95 1.2E-22 T 06-07-2017 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT55_RS02035 f5058e130e32e2eb739b440c97b30fd6 98 SUPERFAMILY SSF50715 2 95 1.15E-19 T 06-07-2017 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT55_RS02035 f5058e130e32e2eb739b440c97b30fd6 98 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 4 93 2.0E-27 T 06-07-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT55_RS27280 f367e8b9a9573f22dd30f289c0bc5edb 263 Gene3D G3DSA:1.10.260.40 11 56 2.3E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS27280 f367e8b9a9573f22dd30f289c0bc5edb 263 Pfam PF13464 Domain of unknown function (DUF4115) 181 247 6.7E-15 T 06-07-2017 IPR025194 Domain of unknown function DUF4115 APT55_RS27280 f367e8b9a9573f22dd30f289c0bc5edb 263 Pfam PF13413 Helix-turn-helix domain 22 81 2.2E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Pfam PF00330 Aconitase family (aconitate hydratase) 463 808 7.3E-42 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 SUPERFAMILY SSF74778 1 161 6.28E-68 T 06-07-2017 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 PIRSF PIRSF036687 1 850 0.0 T 06-07-2017 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Gene3D G3DSA:3.40.1060.10 511 673 2.5E-77 T 06-07-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 ProSitePatterns PS01244 Aconitase family signature 2. 751 764 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Pfam PF11791 Aconitate B N-terminal domain 5 158 5.2E-68 T 06-07-2017 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Gene3D G3DSA:3.20.19.10 164 351 3.0E-88 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Gene3D G3DSA:3.30.499.10 394 510 2.9E-61 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 SUPERFAMILY SSF53732 370 845 3.53E-143 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Pfam PF06434 Aconitate hydratase 2 N-terminus 170 373 5.7E-100 T 06-07-2017 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 SUPERFAMILY SSF52016 164 363 6.54E-68 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 Gene3D G3DSA:3.30.499.10 675 846 1.1E-52 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS07710 aacd6f09e821e94e7e702f70c7791bdb 864 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 844 0.0 T 06-07-2017 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 Pfam PF04851 Type III restriction enzyme, res subunit 816 1007 6.1E-7 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 990 1057 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 828 879 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 1144 1199 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 1266 1353 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF53335 122 306 1.97E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 Gene3D G3DSA:3.40.50.300 1256 1362 1.1E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 983 1107 9.95E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SUPERFAMILY SSF52540 774 926 9.95E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 Gene3D G3DSA:3.40.50.150 122 320 9.4E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 SMART SM00487 811 1082 5.3E-12 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 Gene3D G3DSA:3.40.50.300 1045 1068 1.8E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30010 e128f07abd7b77a379b743a2e4917cc4 1640 Gene3D G3DSA:3.40.50.300 806 968 1.8E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 Gene3D G3DSA:3.40.50.1820 115 232 1.1E-38 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 Gene3D G3DSA:3.40.50.1820 290 360 1.1E-38 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 SUPERFAMILY SSF53474 113 360 8.94E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 Pfam PF00975 Thioesterase domain 135 355 3.7E-19 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 SUPERFAMILY SSF47336 39 108 9.29E-18 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 Pfam PF00550 Phosphopantetheine attachment site 45 107 2.3E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS10690 1aa83398ef4150d8dd8bb7d028256f23 368 Gene3D G3DSA:1.10.1200.10 38 110 1.2E-22 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS19115 c0b30e6a7f76ac2112dd36419577dd40 218 Pfam PF01618 MotA/TolQ/ExbB proton channel family 69 188 3.3E-31 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 223 242 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 188 207 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 288 314 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 47 67 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 323 342 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 PRINTS PR00173 Glutamate-aspartate symporter signature 350 370 1.2E-38 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 SUPERFAMILY SSF118215 3 397 7.06E-97 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 Gene3D G3DSA:1.10.3860.10 2 398 8.3E-101 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS28030 ac36e694fe5d12ec05d7f2e2ef9de8b6 413 Pfam PF00375 Sodium:dicarboxylate symporter family 4 396 6.7E-101 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 SUPERFAMILY SSF63411 245 422 1.16E-33 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 Gene3D G3DSA:3.30.830.10 16 218 4.2E-53 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 Gene3D G3DSA:3.30.830.10 246 420 2.5E-23 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 Pfam PF00675 Insulinase (Peptidase family M16) 28 170 9.3E-27 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 Pfam PF05193 Peptidase M16 inactive domain 177 355 7.4E-32 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 SUPERFAMILY SSF63411 14 221 1.75E-56 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS11320 c98d4ddc0cb2001c7b4971aafffaccdf 424 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 44 67 - T 06-07-2017 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 254 40.65 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 Gene3D G3DSA:3.60.15.10 5 254 2.0E-82 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 PIRSF PIRSF005457 1 254 1.3E-87 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 Pfam PF00753 Metallo-beta-lactamase superfamily 26 174 3.6E-15 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 SUPERFAMILY SSF56281 1 254 1.04E-63 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 3 254 6.8E-89 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 175 254 1.5E-24 T 06-07-2017 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT55_RS03855 632790331ee2b9121aad2857e1fd1123 254 SMART SM00849 11 174 1.8E-32 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 SUPERFAMILY SSF53613 230 498 9.98E-51 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 SUPERFAMILY SSF64153 12 248 1.57E-59 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 231 500 4.0E-66 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 PIRSF PIRSF017184 10 503 3.6E-95 T 06-07-2017 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Gene3D G3DSA:3.40.1190.20 238 499 1.0E-64 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 12 207 1.1E-44 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 436 446 - T 06-07-2017 IPR017953 Carbohydrate kinase, predicted, conserved site APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Gene3D G3DSA:3.40.50.10260 12 237 3.3E-57 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 226 507 18.816 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 14 207 21.847 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Pfam PF03853 YjeF-related protein N-terminus 33 186 4.3E-39 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT55_RS18590 f0e1c72bf3cad156a51fe334d6a1083c 508 Pfam PF01256 Carbohydrate kinase 249 496 1.4E-56 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT55_RS11900 8588c6f4c022935d8578ebf6dbd9390e 322 Pfam PF01551 Peptidase family M23 196 286 1.1E-29 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS11900 8588c6f4c022935d8578ebf6dbd9390e 322 Gene3D G3DSA:2.70.70.10 168 286 8.3E-42 T 06-07-2017 APT55_RS11900 8588c6f4c022935d8578ebf6dbd9390e 322 SUPERFAMILY SSF51261 152 294 4.81E-50 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 Gene3D G3DSA:3.40.50.300 4 229 8.9E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 SMART SM00382 34 222 3.3E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 Pfam PF00005 ABC transporter 27 174 1.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 TIGRFAM TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family 5 223 2.2E-113 T 06-07-2017 IPR014324 ABC transporter ATP-binding subunit, DevA type APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS16090 d2d5683221ef45599c831d6039145b50 235 SUPERFAMILY SSF52540 5 228 1.47E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 SUPERFAMILY SSF57716 8 43 1.71E-11 T 06-07-2017 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 338 415 1.3E-17 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Gene3D G3DSA:3.40.50.300 80 276 9.5E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Gene3D G3DSA:3.40.50.300 315 332 9.5E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 436 52.323 T 06-07-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 SMART SM00994 7 46 5.4E-24 T 06-07-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 SMART SM01086 338 434 1.5E-31 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 SMART SM00382 134 296 2.9E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 SUPERFAMILY SSF52540 77 426 1.05E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Pfam PF06689 ClpX C4-type zinc finger 8 45 2.4E-21 T 06-07-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Pfam PF07724 AAA domain (Cdc48 subfamily) 134 331 1.5E-48 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 Gene3D G3DSA:1.10.8.60 337 431 2.8E-35 T 06-07-2017 APT55_RS16680 7e5bbb678a591e3656ef06043662bda0 445 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 1 432 3.2E-210 T 06-07-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 APT55_RS13515 4e6aed366cd75dae5ceca80b8af92e32 373 Pfam PF12698 ABC-2 family transporter protein 29 364 1.1E-37 T 06-07-2017 APT55_RS13515 4e6aed366cd75dae5ceca80b8af92e32 373 PRINTS PR00164 ABC-2 type transport system membrane protein signature 258 282 1.6E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS13515 4e6aed366cd75dae5ceca80b8af92e32 373 PRINTS PR00164 ABC-2 type transport system membrane protein signature 295 314 1.6E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS13515 4e6aed366cd75dae5ceca80b8af92e32 373 PRINTS PR00164 ABC-2 type transport system membrane protein signature 315 334 1.6E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS29405 149653905a587961e827f9068a5571f2 91 SMART SM00411 1 90 1.2E-42 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 SUPERFAMILY SSF47729 1 90 4.71E-31 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 Gene3D G3DSA:4.10.520.10 1 90 1.5E-34 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 Pfam PF00216 Bacterial DNA-binding protein 1 89 5.6E-31 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 3.4E-18 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 3.4E-18 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS29405 149653905a587961e827f9068a5571f2 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 3.4E-18 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Gene3D G3DSA:1.10.730.10 660 844 1.0E-49 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 33 656 8.8E-203 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 SUPERFAMILY SSF50677 212 414 2.3E-48 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Gene3D G3DSA:3.90.740.10 212 400 9.6E-53 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Pfam PF08264 Anticodon-binding domain of tRNA 703 857 9.8E-30 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 7 957 20.399 T 06-07-2017 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Pfam PF06827 Zinc finger found in FPG and IleRS 926 954 3.1E-9 T 06-07-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 62 73 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Gene3D G3DSA:3.40.50.620 18 205 2.5E-141 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 Gene3D G3DSA:3.40.50.620 417 654 2.5E-141 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 570 579 3.7E-30 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 243 266 3.7E-30 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 55 66 3.7E-30 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 536 549 3.7E-30 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 412 427 3.7E-30 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 SUPERFAMILY SSF52374 414 666 1.1E-139 T 06-07-2017 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 SUPERFAMILY SSF52374 9 207 1.1E-139 T 06-07-2017 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 19 857 0.0 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT55_RS11915 2a8203ffc43a80ceb9b1e7abdd941b9a 960 SUPERFAMILY SSF47323 670 957 3.92E-77 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 Pfam PF00364 Biotin-requiring enzyme 79 151 1.5E-20 T 06-07-2017 IPR000089 Biotin/lipoyl attachment APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 SUPERFAMILY SSF51230 78 152 1.83E-22 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 1.2E-18 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 1.2E-18 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 1.2E-18 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 109 126 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 3 153 1.4E-50 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT55_RS18905 1c60214617259b968fa5eddf0057ecd2 155 Gene3D G3DSA:2.40.50.100 79 152 3.6E-28 T 06-07-2017 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Pfam PF00005 ABC transporter 384 533 2.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Pfam PF00005 ABC transporter 26 217 1.6E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 269 301 8.6E-7 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 587 613 0.0011 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Gene3D G3DSA:3.40.50.300 4 290 1.2E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18795 2409d04196f4184624e5421efe19b255 627 Gene3D G3DSA:3.40.50.300 356 608 1.2E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18795 2409d04196f4184624e5421efe19b255 627 ProSitePatterns PS00211 ABC transporters family signature. 190 204 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 ProSitePatterns PS00211 ABC transporters family signature. 507 521 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS18795 2409d04196f4184624e5421efe19b255 627 SUPERFAMILY SSF52540 159 296 3.69E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18795 2409d04196f4184624e5421efe19b255 627 SUPERFAMILY SSF52540 3 111 3.69E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18795 2409d04196f4184624e5421efe19b255 627 SMART SM00382 34 267 9.6E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18795 2409d04196f4184624e5421efe19b255 627 SMART SM00382 392 584 4.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18795 2409d04196f4184624e5421efe19b255 627 SUPERFAMILY SSF52540 369 606 2.88E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Gene3D G3DSA:3.40.630.30 750 900 2.9E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SUPERFAMILY SSF52210 152 318 2.75E-50 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SUPERFAMILY SSF55729 724 899 5.78E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Gene3D G3DSA:3.40.50.261 308 460 2.0E-20 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SUPERFAMILY SSF56059 506 722 6.89E-43 T 06-07-2017 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Pfam PF13302 Acetyltransferase (GNAT) domain 754 897 1.9E-13 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 174 311 6.4E-58 T 06-07-2017 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SMART SM00881 28 123 6.1E-37 T 06-07-2017 IPR003781 CoA-binding GO:0048037 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Gene3D G3DSA:3.40.50.720 24 155 2.1E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SUPERFAMILY SSF52210 317 471 1.96E-42 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 SUPERFAMILY SSF51735 19 163 6.78E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Pfam PF13380 CoA binding domain 32 158 4.7E-22 T 06-07-2017 IPR003781 CoA-binding GO:0048037 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Gene3D G3DSA:3.40.50.261 156 307 4.6E-40 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Pfam PF13549 ATP-grasp domain 499 720 1.1E-88 T 06-07-2017 APT55_RS11770 1e99b88f94ec52835e234f07e28ebf02 917 Gene3D G3DSA:3.30.470.20 512 582 7.4E-7 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Gene3D G3DSA:3.30.450.20 146 260 4.1E-28 T 06-07-2017 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 400 512 4.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Pfam PF00072 Response regulator receiver domain 9 121 6.9E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SUPERFAMILY SSF47384 276 354 2.55E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Pfam PF00989 PAS fold 154 259 1.8E-12 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SUPERFAMILY SSF52172 6 153 5.12E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 466 9.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 9.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 491 9.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 511 9.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SMART SM00448 7 121 1.2E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Gene3D G3DSA:3.30.565.10 375 517 1.5E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SUPERFAMILY SSF55874 343 515 1.15E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SMART SM00086 220 262 7.9E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Gene3D G3DSA:3.40.50.2300 4 126 2.8E-33 T 06-07-2017 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SMART SM00091 153 214 0.002 T 06-07-2017 IPR000014 PAS domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SUPERFAMILY SSF55785 140 260 8.55E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SMART SM00387 400 514 2.6E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Gene3D G3DSA:1.10.287.130 280 350 5.0E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 SMART SM00388 288 354 3.4E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 149 267 1.3E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS07580 7fbfe3394d9e8e641b73a7b51b56fbe2 538 Pfam PF00512 His Kinase A (phospho-acceptor) domain 288 351 2.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 Pfam PF01078 Magnesium chelatase, subunit ChlI 193 399 4.6E-96 T 06-07-2017 IPR000523 Magnesium chelatase ChlI domain APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 SMART SM00382 213 396 1.4E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 Gene3D G3DSA:3.30.230.10 5 167 4.1E-36 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 502 6.9E-216 T 06-07-2017 IPR004482 Mg chelatase-related protein APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 Gene3D G3DSA:3.40.50.300 193 390 2.7E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 142 1.8E-46 T 06-07-2017 APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 SUPERFAMILY SSF52540 193 507 2.67E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 SUPERFAMILY SSF54211 4 167 3.0E-37 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS07385 42b9782cf8f4e97d6879d50469bf49eb 508 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 406 502 8.5E-33 T 06-07-2017 IPR025158 Mg chelatase-related protein, C-terminal domain APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 61 81 2.2E-21 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 23 37 2.2E-21 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 235 255 2.2E-21 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 212 230 2.2E-21 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 Pfam PF01555 DNA methylase 26 250 6.0E-34 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 SUPERFAMILY SSF53335 114 256 3.11E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 SUPERFAMILY SSF53335 2 84 3.11E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS29375 442aa1f60400bbb12e842d19412df2b4 275 Gene3D G3DSA:3.40.50.150 4 257 1.8E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17030 b84712cf68cad5cfe9d8175b56d9c599 251 Gene3D G3DSA:3.40.30.10 156 247 1.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17030 b84712cf68cad5cfe9d8175b56d9c599 251 SUPERFAMILY SSF52833 154 246 8.39E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17030 b84712cf68cad5cfe9d8175b56d9c599 251 SMART SM01248 162 243 1.8E-37 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS17030 b84712cf68cad5cfe9d8175b56d9c599 251 Pfam PF07689 KaiB domain 162 241 1.1E-24 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS08260 d804f5ba082ae882af5393f902497839 208 Pfam PF11210 Protein of unknown function (DUF2996) 84 206 4.6E-48 T 06-07-2017 IPR021374 Protein of unknown function DUF2996 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Pfam PF00512 His Kinase A (phospho-acceptor) domain 117 213 5.2E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 375 2.3E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Gene3D G3DSA:1.10.287.130 181 210 2.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Gene3D G3DSA:1.10.287.130 112 143 2.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Gene3D G3DSA:3.30.450.20 1 46 5.4E-4 T 06-07-2017 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 SUPERFAMILY SSF47384 182 212 3.73E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 SUPERFAMILY SSF47384 112 152 3.73E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 374 3.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 354 3.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 333 3.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 319 3.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 SUPERFAMILY SSF55874 202 375 1.23E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 Gene3D G3DSA:3.30.565.10 212 377 8.5E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04500 4358ffe1e79519ad3edde657a6eb841a 386 SMART SM00387 259 377 2.0E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 4.6E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 4.6E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 SUPERFAMILY SSF46689 5 70 2.36E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 1.3E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 SUPERFAMILY SSF48498 79 192 2.1E-19 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 Gene3D G3DSA:1.10.357.10 6 194 9.3E-40 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS07060 5ae08c289d5db5643ea2b54a96df0772 196 Pfam PF16925 Bacterial transcriptional repressor C-terminal 101 185 2.0E-12 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 137 152 - T 06-07-2017 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 Pfam PF08245 Mur ligase middle domain 46 214 5.5E-9 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 407 5.4E-108 T 06-07-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 Gene3D G3DSA:3.90.190.20 282 411 1.8E-33 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 Gene3D G3DSA:3.40.1190.10 8 280 1.6E-88 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 SUPERFAMILY SSF53623 6 280 1.98E-88 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 Pfam PF02875 Mur ligase family, glutamate ligase domain 280 350 6.7E-6 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 SUPERFAMILY SSF53244 282 410 1.53E-28 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS03320 0fb65b5bee61704107cd1bccb831d2a4 414 PIRSF PIRSF001563 1 414 1.2E-124 T 06-07-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 279 285 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 276 288 2.8E-22 T 06-07-2017 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 305 329 2.8E-22 T 06-07-2017 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 194 208 2.8E-22 T 06-07-2017 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 170 186 2.8E-22 T 06-07-2017 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 Pfam PF02384 N-6 DNA Methylase 148 453 6.3E-79 T 06-07-2017 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 Pfam PF12161 HsdM N-terminal domain 3 137 1.8E-12 T 06-07-2017 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 SUPERFAMILY SSF53335 3 471 1.14E-112 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08425 9605a0a00e9b96e32e15ab13d07cffbf 492 Gene3D G3DSA:3.40.50.150 172 406 1.5E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 Gene3D G3DSA:1.10.1520.10 20 134 1.1E-40 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 Pfam PF00636 Ribonuclease III domain 31 125 6.8E-13 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 SUPERFAMILY SSF69065 23 136 9.07E-33 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 20 137 24.302 T 06-07-2017 IPR008226 Mini-ribonuclease 3 family APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 SMART SM00535 9 138 2.0E-7 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS08240 d136102dceefe2faf8348afa71c339bc 139 PIRSF PIRSF005520 15 138 1.2E-45 T 06-07-2017 IPR008226 Mini-ribonuclease 3 family APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Gene3D G3DSA:1.10.150.20 166 235 6.2E-20 T 06-07-2017 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Pfam PF00817 impB/mucB/samB family 7 153 2.7E-49 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Gene3D G3DSA:3.30.70.270 66 164 4.8E-34 T 06-07-2017 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 SUPERFAMILY SSF56672 2 234 2.67E-86 T 06-07-2017 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 SUPERFAMILY SSF100879 238 339 2.2E-26 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Gene3D G3DSA:3.30.1490.100 241 342 1.3E-28 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Hamap MF_01113 DNA polymerase IV [dinB]. 1 358 37.336 T 06-07-2017 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 APT55_RS28390 1d8eee663724e9c8e1ba4f4bb325dba9 359 Pfam PF11799 impB/mucB/samB family C-terminal domain 235 341 1.7E-16 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 Pfam PF01218 Coproporphyrinogen III oxidase 25 337 3.7E-138 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 19 313 57.514 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 177 201 - T 06-07-2017 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 Gene3D G3DSA:3.40.1500.10 20 337 5.0E-138 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 SUPERFAMILY SSF102886 20 337 1.57E-136 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PIRSF PIRSF000166 3 337 1.2E-135 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 270 297 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 136 158 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 298 324 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 173 202 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 64 85 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 106 130 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS05275 224f5f8ad9c40414eaa48e1514702def 337 PRINTS PR00073 Coprogen oxidase signature 47 63 9.4E-87 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS23105 ae2d8c1cc65ffc4c9aafd6af146d829f 289 Pfam PF01595 Domain of unknown function DUF21 19 201 1.0E-35 T 06-07-2017 IPR002550 Domain of unknown function DUF21 APT55_RS23105 ae2d8c1cc65ffc4c9aafd6af146d829f 289 Pfam PF03471 Transporter associated domain 197 272 2.9E-15 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS23105 ae2d8c1cc65ffc4c9aafd6af146d829f 289 SMART SM01091 194 273 2.2E-19 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS23105 ae2d8c1cc65ffc4c9aafd6af146d829f 289 SUPERFAMILY SSF56176 194 274 2.32E-14 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS23105 ae2d8c1cc65ffc4c9aafd6af146d829f 289 Gene3D G3DSA:3.30.465.10 189 272 1.3E-17 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SUPERFAMILY SSF55785 149 281 9.07E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00091 302 368 9.5E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00091 162 230 6.0 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 619 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 643 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 663 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 605 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Gene3D G3DSA:1.10.287.130 435 505 6.6E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Gene3D G3DSA:3.30.450.20 151 292 1.4E-17 T 06-07-2017 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SUPERFAMILY SSF55874 498 666 7.99E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SUPERFAMILY SSF47384 426 506 3.53E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Pfam PF00512 His Kinase A (phospho-acceptor) domain 443 506 5.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SUPERFAMILY SSF52172 7 158 6.69E-24 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Gene3D G3DSA:3.30.450.20 293 413 9.9E-32 T 06-07-2017 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Gene3D G3DSA:3.30.565.10 511 666 3.8E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Gene3D G3DSA:3.40.50.2300 7 139 2.8E-22 T 06-07-2017 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00086 238 283 2.4 T 06-07-2017 IPR001610 PAC motif APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00086 374 416 5.9E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Pfam PF00072 Response regulator receiver domain 18 120 5.4E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 289 6.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 298 421 3.6E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SUPERFAMILY SSF55785 289 413 2.27E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00448 6 122 1.6E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 664 5.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00388 443 509 1.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Pfam PF08447 PAS fold 185 267 3.8E-11 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 Pfam PF08447 PAS fold 325 410 1.9E-16 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS10325 b9e8bbae6c68c901a66b922419b754ef 675 SMART SM00387 554 666 1.3E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 SUPERFAMILY SSF141571 30 161 1.16E-34 T 06-07-2017 APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 SUPERFAMILY SSF141571 122 276 6.44E-42 T 06-07-2017 APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 Pfam PF00805 Pentapeptide repeats (8 copies) 229 262 2.6E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 Pfam PF00805 Pentapeptide repeats (8 copies) 174 213 5.0E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 Pfam PF00805 Pentapeptide repeats (8 copies) 51 86 2.1E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03600 1e2dc554d9fd5a712a3cdd9b3dbae969 305 Pfam PF00805 Pentapeptide repeats (8 copies) 109 148 6.8E-15 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03875 847087c0b8c1efd5b298b5227243361f 451 SUPERFAMILY SSF53756 204 446 6.28E-59 T 06-07-2017 APT55_RS03875 847087c0b8c1efd5b298b5227243361f 451 SUPERFAMILY SSF53756 1 143 6.28E-59 T 06-07-2017 APT55_RS03875 847087c0b8c1efd5b298b5227243361f 451 Gene3D G3DSA:3.40.50.2000 269 422 4.9E-22 T 06-07-2017 APT55_RS03875 847087c0b8c1efd5b298b5227243361f 451 Pfam PF00534 Glycosyl transferases group 1 258 415 1.3E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS03875 847087c0b8c1efd5b298b5227243361f 451 Pfam PF13439 Glycosyltransferase Family 4 15 250 7.9E-16 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 4 740 0.0 T 06-07-2017 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 Pfam PF01228 Glycine radical 616 722 1.7E-41 T 06-07-2017 IPR001150 Glycine radical domain GO:0003824|GO:0008152 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 ProSitePatterns PS00850 Glycine radical domain signature. 711 719 - T 06-07-2017 IPR019777 Formate C-acetyltransferase glycine radical, conserved site APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 Pfam PF02901 Pyruvate formate lyase-like 15 600 1.5E-213 T 06-07-2017 IPR004184 Pyruvate formate lyase domain GO:0003824 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 SUPERFAMILY SSF51998 2 740 1.74E-283 T 06-07-2017 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 PIRSF PIRSF000379 1 741 0.0 T 06-07-2017 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 APT55_RS11755 b64227d5d0b6c87124e9299caffe7e38 741 Gene3D G3DSA:3.20.70.20 2 739 0.0 T 06-07-2017 APT55_RS21615 739bfadeaaaeab515dc8d58a66acb41f 341 Pfam PF04087 Domain of unknown function (DUF389) 66 202 3.1E-33 T 06-07-2017 IPR005240 Protein of unknown function DUF389 APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 306 1.0E-113 T 06-07-2017 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 Pfam PF12706 Beta-lactamase superfamily domain 34 152 2.6E-11 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 Pfam PF12706 Beta-lactamase superfamily domain 202 269 6.2E-8 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 SUPERFAMILY SSF56281 2 307 3.74E-85 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 Hamap MF_01818 Ribonuclease BN [rbn]. 1 306 40.506 T 06-07-2017 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 APT55_RS13950 cb0acaab9923658dca6b96740d43fdf0 348 Gene3D G3DSA:3.60.15.10 3 307 1.6E-86 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.40.50.2300 1645 1767 1.2E-30 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF01590 GAF domain 717 805 6.7E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF01590 GAF domain 1231 1380 3.6E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00086 318 360 27.0 T 06-07-2017 IPR001610 PAC motif APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00086 1023 1065 0.021 T 06-07-2017 IPR001610 PAC motif APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00086 442 484 7.5E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00086 894 936 1.4E-6 T 06-07-2017 IPR001610 PAC motif APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 309 367 5.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 951 1071 1.3E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 816 943 3.1E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1090 1214 3.1E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 368 490 6.8E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 109 223 3.1E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 831 939 8.9E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF13188 PAS domain 237 279 0.0013 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF47384 1385 1469 1.02E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 480 617 1.29E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 122 225 2.65E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08448 PAS fold 1097 1210 6.0E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08448 PAS fold 518 631 8.7E-14 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08448 PAS fold 954 1067 2.3E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08448 PAS fold 117 219 1.4E-15 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 820 888 3.5 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 510 576 25.0 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 1091 1156 8.8E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 372 436 0.0021 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 111 178 2.5E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 236 301 28.0 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00091 948 1016 4.1E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00448 1647 1762 3.0E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 109 223 2.2E-25 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1514 1626 1.6E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.40 1219 1387 4.0E-31 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 815 942 1.1E-39 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 351 498 1.2E-33 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.40 643 814 9.9E-27 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 943 1063 4.9E-23 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 224 350 2.4E-15 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 933 1063 1.68E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1586 1604 4.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1611 1624 4.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1551 1565 4.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 1061 1173 3.84E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.565.10 1454 1626 2.0E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1403 1467 1.9E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08447 PAS fold 395 477 1.1E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF08447 PAS fold 844 930 6.6E-19 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 357 482 4.19E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF52172 1646 1767 3.42E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Pfam PF00072 Response regulator receiver domain 1649 1762 3.6E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00387 1514 1627 3.2E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:1.10.287.130 1394 1453 2.7E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55781 1233 1385 6.76E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00065 1226 1390 7.4E-10 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00065 666 816 7.1E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55785 223 358 1.92E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SMART SM00388 1402 1468 2.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55874 1457 1629 3.41E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 1082 1208 3.4E-19 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 Gene3D G3DSA:3.30.450.20 505 628 1.6E-12 T 06-07-2017 APT55_RS04710 95d4ce82affcc46022891713d439407a 1771 SUPERFAMILY SSF55781 645 816 6.98E-24 T 06-07-2017 IPR029016 GAF domain-like APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 40 175 6.7E-25 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Hamap MF_00942 Endonuclease III [nth]. 6 216 37.761 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 TIGRFAM TIGR01083 nth: endonuclease III 9 201 2.3E-76 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Gene3D G3DSA:1.10.1670.10 129 214 1.2E-28 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 PIRSF PIRSF001435 5 219 6.7E-48 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Pfam PF00633 Helix-hairpin-helix motif 105 131 3.6E-6 T 06-07-2017 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 SUPERFAMILY SSF48150 9 214 7.07E-68 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 SMART SM00478 44 192 2.7E-57 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 194 210 6.1E-5 T 06-07-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 SMART SM00525 193 213 0.0022 T 06-07-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT55_RS09545 ff045b137efeab16d65748f2603b67f1 228 Gene3D G3DSA:1.10.340.30 29 128 3.5E-35 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 18 28 - T 06-07-2017 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 Gene3D G3DSA:3.40.50.1270 184 388 3.4E-89 T 06-07-2017 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 Gene3D G3DSA:3.40.50.1260 8 183 4.2E-78 T 06-07-2017 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 13 29 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 172 194 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 141 163 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 376 393 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 317 342 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 113 128 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 353 364 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 195 214 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PRINTS PR00477 Phosphoglycerate kinase family signature 35 57 9.5E-98 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 Pfam PF00162 Phosphoglycerate kinase 11 390 8.6E-167 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 SUPERFAMILY SSF53748 8 400 3.89E-163 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 400 42.895 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS10125 1a486176cc6940b4ac324e0165fbd2ff 401 PIRSF PIRSF000724 2 401 2.6E-160 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Pfam PF05192 MutS domain III 326 617 7.4E-40 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Pfam PF00488 MutS domain V 671 857 1.7E-83 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 PIRSF PIRSF037677 20 885 4.1E-159 T 06-07-2017 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 36 886 24.349 T 06-07-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SUPERFAMILY SSF52540 625 858 6.0E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SUPERFAMILY SSF53150 241 336 3.01E-39 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SUPERFAMILY SSF53150 147 211 3.01E-39 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Gene3D G3DSA:1.10.1420.10 320 526 2.4E-54 T 06-07-2017 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Pfam PF05188 MutS domain II 158 292 3.4E-24 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Pfam PF01624 MutS domain I 37 149 3.4E-40 T 06-07-2017 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SUPERFAMILY SSF55271 32 145 4.97E-38 T 06-07-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 36 871 8.6E-280 T 06-07-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SMART SM00534 667 854 2.2E-117 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SUPERFAMILY SSF48334 324 624 1.19E-82 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 748 764 - T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Gene3D G3DSA:3.40.1170.10 32 150 4.8E-45 T 06-07-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Gene3D G3DSA:3.40.50.300 626 858 7.4E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 SMART SM00533 341 649 1.6E-95 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Gene3D G3DSA:3.30.420.110 156 293 1.7E-39 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APT55_RS17265 b80930952276ef91c43e2de9347bf476 890 Pfam PF05190 MutS family domain IV 487 576 2.6E-25 T 06-07-2017 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 Pfam PF00005 ABC transporter 379 528 7.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 Gene3D G3DSA:1.20.1560.10 7 339 1.5E-38 T 06-07-2017 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 Gene3D G3DSA:3.40.50.300 362 592 4.1E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 Pfam PF00664 ABC transporter transmembrane region 29 303 1.1E-26 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 SUPERFAMILY SSF90123 7 343 1.05E-42 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 SMART SM00382 388 574 4.9E-20 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS15220 85fe2582d434852fc739dca60a264fd9 605 SUPERFAMILY SSF52540 353 598 3.52E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SMART SM00912 46 151 2.2E-15 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 348 512 6.28E-9 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 40 251 2.17E-37 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 363 391 2.17E-37 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 279 329 2.17E-37 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 Gene3D G3DSA:2.160.20.10 362 392 2.4E-23 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 Gene3D G3DSA:2.160.20.10 325 328 2.4E-23 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 Gene3D G3DSA:2.160.20.10 59 222 2.4E-23 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 71 146 1.7E-20 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 Pfam PF05860 haemagglutination activity domain 41 150 1.4E-25 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 664 689 7.22E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07410 a4bb4cf492ca92b9846421ca850c9ce1 906 SUPERFAMILY SSF51126 536 610 7.22E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 SMART SM00255 327 474 2.0E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 SUPERFAMILY SSF52200 326 467 4.84E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 196 7.2E-12 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 Gene3D G3DSA:3.40.50.300 2 231 1.7E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 SUPERFAMILY SSF52540 4 231 1.84E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 Pfam PF13676 TIR domain 331 439 8.0E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16710 020e6c44bbcdc17cfcd831add1674f79 478 Gene3D G3DSA:3.40.50.10140 330 456 7.6E-15 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 782 861 1.8E-24 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 96 147 3.5E-8 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 20 70 1.2E-11 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SUPERFAMILY SSF81923 8 158 8.34E-37 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 9 871 0.0 T 06-07-2017 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Gene3D G3DSA:1.10.1780.10 5 154 2.5E-42 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Gene3D G3DSA:1.10.8.60 791 874 3.2E-31 T 06-07-2017 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 646 664 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Gene3D G3DSA:3.40.50.300 566 790 1.1E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SUPERFAMILY SSF52540 161 560 1.31E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 297 309 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Gene3D G3DSA:1.10.8.60 346 429 5.4E-38 T 06-07-2017 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 6.1E-57 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 2.2E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 723 737 2.2E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 661 679 2.2E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 690 708 2.2E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 337 1.2E-13 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SUPERFAMILY SSF52540 561 870 7.99E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SMART SM01086 782 871 1.5E-35 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SMART SM00382 200 345 8.9E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 SMART SM00382 612 784 2.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS21465 1a39bae4a59f974670a704542a84fec2 895 Gene3D G3DSA:3.40.50.300 162 345 1.5E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 Gene3D G3DSA:1.10.1580.10 184 267 6.7E-11 T 06-07-2017 IPR023179 GTP-binding protein, orthogonal bundle domain APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 Pfam PF01926 50S ribosome-binding GTPase 126 187 9.5E-15 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 Gene3D G3DSA:3.40.50.300 19 179 1.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 SUPERFAMILY SSF52540 12 191 4.09E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 126 146 1.6E-5 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 172 187 1.6E-5 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 6 273 7.7E-94 T 06-07-2017 IPR019991 GTP-binding protein, ribosome biogenesis APT55_RS10115 71ebce3f6002213984c2031a419389ad 278 PIRSF PIRSF006230 2 278 6.6E-79 T 06-07-2017 IPR016478 GTPase, MTG1 APT55_RS26705 66e29086b623407386765e0929f78165 421 Pfam PF01593 Flavin containing amine oxidoreductase 11 273 4.3E-16 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS26705 66e29086b623407386765e0929f78165 421 PRINTS PR00419 Adrenodoxin reductase family signature 25 38 2.1E-6 T 06-07-2017 APT55_RS26705 66e29086b623407386765e0929f78165 421 PRINTS PR00419 Adrenodoxin reductase family signature 2 24 2.1E-6 T 06-07-2017 APT55_RS26705 66e29086b623407386765e0929f78165 421 Gene3D G3DSA:3.90.660.10 30 98 2.2E-5 T 06-07-2017 APT55_RS26705 66e29086b623407386765e0929f78165 421 Gene3D G3DSA:3.50.50.60 1 29 3.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26705 66e29086b623407386765e0929f78165 421 Gene3D G3DSA:3.50.50.60 206 284 3.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26705 66e29086b623407386765e0929f78165 421 Gene3D G3DSA:3.50.50.60 367 407 3.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26705 66e29086b623407386765e0929f78165 421 SUPERFAMILY SSF51905 1 294 3.63E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26705 66e29086b623407386765e0929f78165 421 SUPERFAMILY SSF51905 372 405 3.63E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 SMART SM00388 157 224 1.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 Pfam PF00512 His Kinase A (phospho-acceptor) domain 159 223 7.5E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 Gene3D G3DSA:3.30.565.10 210 376 2.4E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 SMART SM00387 268 376 2.4E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 SUPERFAMILY SSF55874 213 376 4.32E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 333 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 375 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 356 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 319 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 Gene3D G3DSA:3.30.450.20 113 166 8.5E-4 T 06-07-2017 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 Gene3D G3DSA:1.10.287.130 167 209 5.9E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 270 375 2.7E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17770 a86dcb5174f6bba46cddb40f78c4ba52 376 SUPERFAMILY SSF47384 151 224 1.75E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS26420 41b9b373fe3fe5262a9df6c899bd8d57 152 PIRSF PIRSF000239 1 140 2.4E-26 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS26420 41b9b373fe3fe5262a9df6c899bd8d57 152 Pfam PF00578 AhpC/TSA family 5 133 2.4E-39 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS26420 41b9b373fe3fe5262a9df6c899bd8d57 152 SUPERFAMILY SSF52833 3 151 1.05E-50 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS26420 41b9b373fe3fe5262a9df6c899bd8d57 152 Gene3D G3DSA:3.40.30.10 2 151 1.1E-49 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS08605 d73584e3dcf5c07a9d0f38e4f1eab76f 183 Hamap MF_01398 ATP synthase subunit b [atpF]. 24 180 12.673 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT55_RS08605 d73584e3dcf5c07a9d0f38e4f1eab76f 183 SUPERFAMILY SSF81573 87 145 4.58E-6 T 06-07-2017 IPR028987 F-type ATP synthase subunit B-like, membrane domain APT55_RS08605 d73584e3dcf5c07a9d0f38e4f1eab76f 183 Pfam PF00430 ATP synthase B/B' CF(0) 30 160 3.7E-36 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT55_RS23665 3e2382e0ec7f39b1a3f79c3e99a8b2b7 224 SMART SM00240 106 157 2.8E-9 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS23665 3e2382e0ec7f39b1a3f79c3e99a8b2b7 224 Pfam PF00498 FHA domain 107 170 8.0E-17 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS23665 3e2382e0ec7f39b1a3f79c3e99a8b2b7 224 SUPERFAMILY SSF49879 63 185 8.61E-25 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS23665 3e2382e0ec7f39b1a3f79c3e99a8b2b7 224 Gene3D G3DSA:2.60.200.20 64 182 1.9E-23 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 ProSitePatterns PS00211 ABC transporters family signature. 873 887 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Hamap MF_00205 UvrABC system protein A [uvrA]. 43 983 22.626 T 06-07-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.30.1490.20 172 195 3.1E-25 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.30.1490.20 242 282 3.1E-25 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:1.20.1580.10 452 522 1.6E-52 T 06-07-2017 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:1.20.1580.10 297 330 1.6E-52 T 06-07-2017 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:1.20.1580.10 133 171 1.6E-52 T 06-07-2017 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 SUPERFAMILY SSF52540 662 953 3.38E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 ProSitePatterns PS00211 ABC transporters family signature. 532 546 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.40.50.300 523 642 3.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.40.50.300 30 93 3.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.40.50.300 657 735 4.8E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:3.40.50.300 864 984 4.8E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 46 967 0.0 T 06-07-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 SUPERFAMILY SSF52540 475 614 5.89E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 SUPERFAMILY SSF52540 46 246 5.89E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:1.20.1580.10 737 863 5.1E-54 T 06-07-2017 APT55_RS21060 e4af4f73e4ef957021190725d3e0ccdb 990 Gene3D G3DSA:1.10.8.280 333 451 1.1E-32 T 06-07-2017 APT55_RS25800 025cf328b407e0ea716fd4b4b9852f81 218 Pfam PF00033 Cytochrome b/b6/petB 18 183 3.4E-24 T 06-07-2017 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT55_RS25800 025cf328b407e0ea716fd4b4b9852f81 218 Gene3D G3DSA:1.20.810.10 21 187 2.1E-30 T 06-07-2017 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 APT55_RS25800 025cf328b407e0ea716fd4b4b9852f81 218 SUPERFAMILY SSF81342 19 187 5.49E-31 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 SUPERFAMILY SSF89550 2 79 1.44E-43 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 SUPERFAMILY SSF89550 156 241 1.44E-43 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 Pfam PF02811 PHP domain 3 103 1.2E-8 T 06-07-2017 IPR004013 PHP domain GO:0003824 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 SMART SM00481 2 66 2.0E-15 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 Gene3D G3DSA:3.20.20.140 2 84 5.5E-33 T 06-07-2017 APT55_RS05490 fbfdbdf18cf2682cb65eb14b967a3b0d 275 Gene3D G3DSA:3.20.20.140 148 242 5.5E-33 T 06-07-2017 APT55_RS16975 e133978d5e2c1d1183b500666d5691c4 186 SMART SM00260 31 174 1.5E-4 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16975 e133978d5e2c1d1183b500666d5691c4 186 Pfam PF01584 CheW-like domain 36 176 8.7E-18 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16975 e133978d5e2c1d1183b500666d5691c4 186 SUPERFAMILY SSF50341 30 176 2.22E-20 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS08150 4063c1f39a4b6ca437063f0ed74edec4 219 Pfam PF13460 NAD(P)H-binding 7 190 3.0E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08150 4063c1f39a4b6ca437063f0ed74edec4 219 SUPERFAMILY SSF51735 1 201 2.71E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08150 4063c1f39a4b6ca437063f0ed74edec4 219 Gene3D G3DSA:3.40.50.720 1 201 1.5E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS10650 b03f1cc1b3b901ff293b7d7ad8486e5d 388 Pfam PF00534 Glycosyl transferases group 1 200 351 1.6E-32 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10650 b03f1cc1b3b901ff293b7d7ad8486e5d 388 Gene3D G3DSA:3.40.50.2000 197 351 1.2E-28 T 06-07-2017 APT55_RS10650 b03f1cc1b3b901ff293b7d7ad8486e5d 388 SUPERFAMILY SSF53756 8 110 1.49E-61 T 06-07-2017 APT55_RS10650 b03f1cc1b3b901ff293b7d7ad8486e5d 388 SUPERFAMILY SSF53756 137 376 1.49E-61 T 06-07-2017 APT55_RS06160 45c7ee4d6907f8b8aefab595370b53f8 227 Pfam PF14337 Domain of unknown function (DUF4393) 71 190 3.4E-10 T 06-07-2017 IPR025506 Protein of unknown function DUF4393 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 Gene3D G3DSA:3.40.50.720 4 157 6.2E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 SUPERFAMILY SSF48179 158 264 1.34E-36 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 159 263 1.8E-40 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 219 241 - T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 263 4.2E-90 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 PIRSF PIRSF000193 2 265 2.8E-82 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 SUPERFAMILY SSF51735 3 157 2.47E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 3 263 28.137 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 97 6.8E-20 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal APT55_RS04525 ee6b9cc0dd46b3d8cecaffd47f25e2f2 265 Gene3D G3DSA:1.10.3730.10 158 263 8.5E-43 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SUPERFAMILY SSF52172 4 136 1.37E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SMART SM00091 134 203 4.7E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SUPERFAMILY SSF55785 121 250 3.66E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Gene3D G3DSA:1.10.287.130 452 531 8.7E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Pfam PF00512 His Kinase A (phospho-acceptor) domain 462 534 5.6E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SMART SM00448 4 116 7.6E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Pfam PF00072 Response regulator receiver domain 6 116 4.5E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SUPERFAMILY SSF55781 308 438 3.93E-6 T 06-07-2017 IPR029016 GAF domain-like APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Gene3D G3DSA:3.40.50.2300 3 125 2.7E-30 T 06-07-2017 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SUPERFAMILY SSF47384 449 533 2.16E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 SMART SM00388 461 537 1.5E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 131 260 3.6E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Gene3D G3DSA:3.30.450.20 126 250 2.1E-19 T 06-07-2017 APT55_RS05040 827bedffb236e11be8d1f8a8d4f3c226 675 Pfam PF08448 PAS fold 142 255 8.3E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Pfam PF04545 Sigma-70, region 4 255 307 7.8E-20 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Gene3D G3DSA:1.10.601.10 2 41 2.4E-54 T 06-07-2017 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Gene3D G3DSA:1.10.601.10 79 156 2.4E-54 T 06-07-2017 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 SUPERFAMILY SSF88659 160 233 1.96E-17 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 PRINTS PR00046 Major sigma-70 factor signature 111 124 8.3E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 PRINTS PR00046 Major sigma-70 factor signature 279 294 8.3E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 PRINTS PR00046 Major sigma-70 factor signature 135 143 8.3E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 PRINTS PR00046 Major sigma-70 factor signature 294 305 8.3E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 PRINTS PR00046 Major sigma-70 factor signature 258 270 8.3E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Gene3D G3DSA:1.10.10.10 160 210 4.7E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family 9 306 7.1E-132 T 06-07-2017 IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 SUPERFAMILY SSF88946 6 157 1.83E-54 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Pfam PF00140 Sigma-70 factor, region 1.2 9 38 6.6E-12 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Pfam PF04542 Sigma-70 region 2 87 156 8.5E-22 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Gene3D G3DSA:1.10.10.10 250 309 1.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 84 308 6.1E-38 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 SUPERFAMILY SSF88659 218 309 8.97E-25 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS27310 bd047852f1bc51a935b295540aec0cda 318 Pfam PF04539 Sigma-70 region 3 166 240 3.4E-27 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF50993 958 1171 4.18E-6 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1655 1773 1.14E-22 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Gene3D G3DSA:2.120.10.30 192 415 4.9E-16 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1886 2000 2.75E-24 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 2003 2118 7.46E-27 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 2733 2794 4.1E-6 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF82171 532 695 1.96E-26 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF82171 733 975 1.96E-26 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Gene3D G3DSA:2.120.10.30 657 972 6.8E-26 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1540 1636 4.8E-15 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 2488 2559 6.9E-14 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1215 1288 130.0 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1777 1862 8.8E-11 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1425 1525 9.3E-15 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 2228 2328 1.1E-13 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1878 1975 2.9E-17 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1649 1748 5.2E-14 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 2345 2444 7.5E-14 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1313 1411 9.2E-11 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 1996 2095 8.2E-15 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF03160 Calx-beta domain 2109 2211 2.4E-14 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF07676 WD40-like Beta Propeller Repeat 782 809 0.07 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF07676 WD40-like Beta Propeller Repeat 583 612 1.9E-4 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF07676 WD40-like Beta Propeller Repeat 893 913 0.0079 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF07676 WD40-like Beta Propeller Repeat 349 381 0.24 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF07676 WD40-like Beta Propeller Repeat 954 983 0.1 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF82171 227 495 7.06E-20 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1194 1315 1.57E-7 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 2356 2466 1.06E-24 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1445 1549 7.98E-26 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1554 1658 4.71E-26 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1424 1525 2.7E-9 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1764 1862 5.6E-4 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1875 1976 2.5E-15 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1539 1636 5.3E-16 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 2225 2328 6.6E-6 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 2456 2559 8.1E-14 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1648 1749 2.7E-6 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 2108 2212 4.5E-8 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 2342 2444 1.9E-11 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1308 1411 4.6E-5 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SMART SM00237 1998 2095 1.6E-7 T 06-07-2017 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 2118 2235 7.19E-28 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1774 1885 8.5E-24 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 2236 2352 1.57E-25 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 2470 2591 3.79E-29 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF69318 2632 2852 8.37E-39 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF69318 2891 2997 8.37E-39 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 SUPERFAMILY SSF141072 1321 1435 5.36E-22 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Gene3D G3DSA:2.120.10.60 416 631 3.0E-17 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Gene3D G3DSA:2.120.10.60 1020 1193 6.5E-7 T 06-07-2017 APT55_RS29085 379e44da4ecc5cc2cc87dbaf5058348e 3183 Pfam PF14252 Domain of unknown function (DUF4347) 43 206 1.1E-56 T 06-07-2017 IPR025592 Domain of unknown function DUF4347 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Gene3D G3DSA:3.30.413.10 443 578 1.2E-29 T 06-07-2017 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 TIGRFAM TIGR02042 sir: sulfite reductase, ferredoxin dependent 7 581 1.4E-303 T 06-07-2017 IPR011787 Sulphite reductase, ferredoxin dependent GO:0020037|GO:0050311|GO:0051539 KEGG: 00920+1.8.7.1 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 SUPERFAMILY SSF55124 11 140 3.27E-28 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Gene3D G3DSA:3.30.413.10 141 352 1.0E-67 T 06-07-2017 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 365 433 2.1E-9 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 67 129 9.7E-15 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Gene3D G3DSA:3.90.480.10 67 138 1.4E-48 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Gene3D G3DSA:3.90.480.10 357 435 1.4E-48 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 494 510 - T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 SUPERFAMILY SSF56014 444 580 3.66E-33 T 06-07-2017 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 SUPERFAMILY SSF55124 361 437 4.49E-17 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 PRINTS PR00397 Sirohaem Fe-binding site signature 494 512 8.0E-8 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 PRINTS PR00397 Sirohaem Fe-binding site signature 446 464 8.0E-8 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 SUPERFAMILY SSF56014 141 358 2.22E-52 T 06-07-2017 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 445 577 5.0E-6 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS11000 ab6621acee1340d7e0a761533d3d54da 583 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 166 345 4.9E-52 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 410 631 2.5E-41 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Gene3D G3DSA:2.70.150.10 50 228 1.4E-25 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Pfam PF00702 haloacid dehalogenase-like hydrolase 337 564 7.2E-32 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 21 708 0.0 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF81653 130 227 1.44E-20 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 550 569 8.0E-25 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 573 585 8.0E-25 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 173 187 8.0E-25 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 497 507 8.0E-25 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 341 355 8.0E-25 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Pfam PF00122 E1-E2 ATPase 93 332 1.3E-40 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 343 349 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 25 711 38.918 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Gene3D G3DSA:3.40.50.1000 327 353 8.7E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Gene3D G3DSA:3.40.50.1000 483 596 8.7E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 522 538 3.1E-5 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 550 566 3.1E-5 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF56784 473 594 2.85E-39 T 06-07-2017 IPR023214 HAD-like domain APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF56784 329 353 2.85E-39 T 06-07-2017 IPR023214 HAD-like domain APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF56784 388 442 2.85E-39 T 06-07-2017 IPR023214 HAD-like domain APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF81665 48 125 2.88E-10 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF81665 635 693 2.88E-10 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 SUPERFAMILY SSF81665 228 335 2.88E-10 T 06-07-2017 APT55_RS29000 6fb00ecaa36ac663e81e6912066a846b 711 Gene3D G3DSA:3.40.1110.10 354 482 2.9E-38 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS18015 b828fb6e2b3d2bd905107c5957796cfb 221 SMART SM00382 30 217 3.5E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18015 b828fb6e2b3d2bd905107c5957796cfb 221 SUPERFAMILY SSF52540 1 219 1.11E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18015 b828fb6e2b3d2bd905107c5957796cfb 221 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS18015 b828fb6e2b3d2bd905107c5957796cfb 221 Gene3D G3DSA:3.40.50.300 1 219 8.9E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18015 b828fb6e2b3d2bd905107c5957796cfb 221 Pfam PF00005 ABC transporter 21 169 6.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 SUPERFAMILY SSF81558 3 736 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 Hamap MF_00482 Photosystem I P700 chlorophyll a apoprotein A2 [psaB]. 1 739 55.852 T 06-07-2017 IPR006244 Photosystem I PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 Gene3D G3DSA:1.20.1130.10 3 734 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 TIGRFAM TIGR01336 psaB: photosystem I core protein PsaB 2 738 0.0 T 06-07-2017 IPR006244 Photosystem I PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 175 199 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 46 69 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 418 440 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 521 539 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 273 291 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 331 354 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 135 159 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 552 572 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 704 732 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 370 396 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 648 670 1.9E-144 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 ProSitePatterns PS00419 Photosystem I psaA and psaB proteins signature. 563 572 - T 06-07-2017 IPR020586 Photosystem I PsaA/PsaB, conserved site MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 PIRSF PIRSF002905 1 738 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS24245 2b31de611e17a272a3de9095535f1148 739 Pfam PF00223 Photosystem I psaA/psaB protein 8 732 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 Hamap MF_00484 Glycogen synthase [glgA]. 1 454 41.291 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 SUPERFAMILY SSF53756 3 457 5.58E-119 T 06-07-2017 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 453 3.5E-156 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 Pfam PF08323 Starch synthase catalytic domain 2 214 2.9E-63 T 06-07-2017 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 Pfam PF00534 Glycosyl transferases group 1 267 406 5.6E-14 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS23285 f2c9a560c0a1d729284dfd2d41a60873 468 Gene3D G3DSA:3.40.50.2000 229 436 1.0E-66 T 06-07-2017 APT55_RS13305 1979c38bac4c9b5ff9320fbe583db109 424 Gene3D G3DSA:3.40.50.2000 198 374 8.7E-26 T 06-07-2017 APT55_RS13305 1979c38bac4c9b5ff9320fbe583db109 424 SUPERFAMILY SSF53756 71 399 1.03E-65 T 06-07-2017 APT55_RS13305 1979c38bac4c9b5ff9320fbe583db109 424 Pfam PF00534 Glycosyl transferases group 1 220 375 4.2E-29 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Gene3D G3DSA:3.30.1330.10 51 197 1.2E-48 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Gene3D G3DSA:3.30.1330.10 424 591 1.6E-65 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 SUPERFAMILY SSF55326 16 197 1.5E-52 T 06-07-2017 APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 PIRSF PIRSF001587 5 774 4.2E-299 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Pfam PF02769 AIR synthase related protein, C-terminal domain 603 740 1.6E-17 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Pfam PF02769 AIR synthase related protein, C-terminal domain 204 351 1.5E-32 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Pfam PF00586 AIR synthase related protein, N-terminal domain 475 588 3.6E-26 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 190 1.4E-24 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 SUPERFAMILY SSF56042 599 769 7.78E-39 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 SUPERFAMILY SSF56042 199 436 3.14E-54 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 775 324.471 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 SUPERFAMILY SSF55326 411 594 6.93E-55 T 06-07-2017 APT55_RS09335 245d99d00907cf3d4230ad211bc15975 775 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 20 769 4.4E-277 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 46 363 19.784 T 06-07-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 ProSitePatterns PS01347 MraY family signature 1. 89 101 - T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 Pfam PF00953 Glycosyl transferase family 4 119 283 2.4E-34 T 06-07-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 89 101 3.4E-5 T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 61 356 9.9E-99 T 06-07-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS16810 cb030ee7429d4ed376c616625f395e1b 363 ProSitePatterns PS01348 MraY family signature 2. 205 216 - T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 SUPERFAMILY SSF116878 377 452 5.36E-47 T 06-07-2017 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 SUPERFAMILY SSF116878 125 223 5.36E-47 T 06-07-2017 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 SMART SM00173 217 375 0.0088 T 06-07-2017 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:3.40.50.300 219 250 1.7E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 452 33.254 T 06-07-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Pfam PF10396 GTP-binding protein TrmE N-terminus 4 124 2.7E-38 T 06-07-2017 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 PRINTS PR00449 Transforming protein P21 ras signature 324 337 4.6E-5 T 06-07-2017 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 PRINTS PR00449 Transforming protein P21 ras signature 220 241 4.6E-5 T 06-07-2017 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:3.40.50.300 290 380 7.5E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:1.20.120.430 251 274 5.4E-50 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:1.20.120.430 382 452 5.4E-50 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:1.20.120.430 126 186 5.4E-50 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Pfam PF01926 50S ribosome-binding GTPase 221 334 4.0E-27 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 SUPERFAMILY SSF52540 77 174 8.82E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 SUPERFAMILY SSF52540 207 369 8.82E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 452 7.0E-158 T 06-07-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Gene3D G3DSA:3.30.1360.120 2 125 3.8E-42 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 220 359 3.9E-26 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS21700 8abf1422cd6209e9acf293229a8861f2 452 Pfam PF12631 MnmE helical domain 127 449 9.0E-58 T 06-07-2017 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 137 362 3.5E-36 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Pfam PF00140 Sigma-70 factor, region 1.2 62 90 3.3E-11 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 SUPERFAMILY SSF88659 271 366 4.11E-25 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Gene3D G3DSA:1.10.10.10 311 373 5.8E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Gene3D G3DSA:1.10.601.10 132 209 9.7E-54 T 06-07-2017 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Gene3D G3DSA:1.10.601.10 55 94 9.7E-54 T 06-07-2017 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 334 360 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family 62 361 3.2E-124 T 06-07-2017 IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Pfam PF04542 Sigma-70 region 2 140 207 1.9E-20 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Gene3D G3DSA:1.10.10.10 213 262 1.1E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Gene3D G3DSA:1.10.10.10 95 126 9.4E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 PRINTS PR00046 Major sigma-70 factor signature 313 325 2.5E-26 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 PRINTS PR00046 Major sigma-70 factor signature 164 177 2.5E-26 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 PRINTS PR00046 Major sigma-70 factor signature 188 196 2.5E-26 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 PRINTS PR00046 Major sigma-70 factor signature 334 349 2.5E-26 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 PRINTS PR00046 Major sigma-70 factor signature 349 360 2.5E-26 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Pfam PF04539 Sigma-70 region 3 219 295 1.3E-21 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Pfam PF04539 Sigma-70 region 3 93 128 2.3E-6 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 Pfam PF04545 Sigma-70, region 4 312 362 9.2E-18 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 SUPERFAMILY SSF88946 59 210 1.1E-52 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS13985 bc9da7d78db391469fa914be1f6cefe7 374 SUPERFAMILY SSF88659 213 286 4.8E-17 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 SUPERFAMILY SSF82861 23 105 6.93E-14 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 SUPERFAMILY SSF50182 107 171 2.52E-15 T 06-07-2017 IPR010920 LSM domain APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 SUPERFAMILY SSF82689 174 254 3.4E-10 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 Gene3D G3DSA:2.30.30.60 122 170 4.4E-16 T 06-07-2017 APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 Pfam PF00924 Mechanosensitive ion channel 65 254 4.6E-39 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT55_RS26345 add60efab14c2606d2224b874ae688f8 266 Gene3D G3DSA:3.30.70.100 175 254 3.4E-8 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 Gene3D G3DSA:3.40.630.10 216 394 1.4E-49 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 Gene3D G3DSA:3.40.630.10 29 81 1.4E-49 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 SUPERFAMILY SSF52025 96 199 1.1E-19 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 SUPERFAMILY SSF53187 209 373 6.83E-47 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 SUPERFAMILY SSF53187 28 81 6.83E-47 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 Gene3D G3DSA:3.50.30.30 103 204 6.5E-22 T 06-07-2017 APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 Pfam PF02225 PA domain 111 194 1.8E-14 T 06-07-2017 IPR003137 PA domain APT55_RS25865 d1a6dae93b7c6cf79e9980163ba612de 396 Pfam PF04389 Peptidase family M28 217 383 4.8E-33 T 06-07-2017 IPR007484 Peptidase M28 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 SUPERFAMILY SSF52096 29 285 7.71E-82 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 Gene3D G3DSA:3.90.226.10 23 284 1.6E-82 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 Pfam PF01039 Carboxyl transferase domain 106 243 7.5E-21 T 06-07-2017 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 4 285 39.468 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 286 2.5E-133 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 167 185 2.1E-42 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 133 147 2.1E-42 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 233 244 2.1E-42 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 204 221 2.1E-42 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS03380 ee99d3380ec97967c95fe2afb5fae184 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 255 264 2.1E-42 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS30280 88fef214e852c66a165fcbd75398a5c3 165 SUPERFAMILY SSF51182 17 138 5.45E-23 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS30280 88fef214e852c66a165fcbd75398a5c3 165 Pfam PF07883 Cupin domain 49 118 1.1E-17 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS30280 88fef214e852c66a165fcbd75398a5c3 165 Gene3D G3DSA:2.60.120.10 30 130 4.2E-20 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 308 1.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 Pfam PF05227 CHASE3 domain 51 182 1.3E-12 T 06-07-2017 IPR007891 CHASE3 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 462 2.9E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 SUPERFAMILY SSF55874 297 461 4.06E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 8.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 8.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 8.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 8.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 Gene3D G3DSA:3.30.565.10 294 462 1.5E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 Gene3D G3DSA:1.10.287.130 232 293 7.2E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 SUPERFAMILY SSF47384 224 309 2.35E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 SMART SM00387 353 463 1.2E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14260 7af360ad364b80e52e0b72962ce90eab 468 SMART SM00388 240 308 1.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19055 f79b38f4e0300c16e0c1b1c437a8e23d 413 Pfam PF00395 S-layer homology domain 37 79 8.4E-18 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS19055 f79b38f4e0300c16e0c1b1c437a8e23d 413 Pfam PF00395 S-layer homology domain 163 207 3.0E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS19055 f79b38f4e0300c16e0c1b1c437a8e23d 413 Pfam PF00395 S-layer homology domain 97 139 2.3E-12 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS24235 777b61d66d1e530a88eece8ff0e338f1 205 Gene3D G3DSA:3.40.50.1010 20 175 1.5E-51 T 06-07-2017 IPR029060 PIN domain-like APT55_RS24235 777b61d66d1e530a88eece8ff0e338f1 205 Pfam PF01936 NYN domain 24 172 6.2E-38 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 SUPERFAMILY SSF46785 134 209 1.08E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 Pfam PF13545 Crp-like helix-turn-helix domain 137 208 7.0E-16 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 SUPERFAMILY SSF51206 14 130 6.55E-30 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 177 192 5.8E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 161 177 5.8E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 ProSitePatterns PS00042 Crp-type HTH domain signature. 163 186 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 SMART SM00100 1 116 3.7E-15 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 SMART SM00419 155 203 1.9E-16 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 Gene3D G3DSA:1.10.10.10 134 210 9.5E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 Gene3D G3DSA:2.60.120.10 14 130 2.4E-29 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 TIGRFAM TIGR03697 NtcA_cyano: global nitrogen regulator NtcA 20 212 1.4E-117 T 06-07-2017 IPR022299 Transcription regulator, NtcA GO:0003677|GO:0003700|GO:0006355 APT55_RS04250 133f69860a33f54184ac21e6f11f1160 212 Pfam PF00027 Cyclic nucleotide-binding domain 15 103 2.1E-18 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 447 30.49 T 06-07-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 ProSitePatterns PS01008 DnaA protein signature. 406 425 - T 06-07-2017 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 358 425 6.9E-29 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 SMART SM00760 356 425 1.1E-37 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 SUPERFAMILY SSF52540 114 327 2.59E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 SMART SM00382 147 275 5.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 2 446 1.2E-156 T 06-07-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Gene3D G3DSA:1.10.8.60 281 348 1.8E-26 T 06-07-2017 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Gene3D G3DSA:1.10.1750.10 351 447 1.2E-33 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Pfam PF00308 Bacterial dnaA protein 115 331 2.0E-91 T 06-07-2017 IPR013317 Chromosomal replication initiator protein DnaA APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 406 425 2.6E-47 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 226 2.6E-47 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 148 168 2.6E-47 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 180 194 2.6E-47 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 246 273 2.6E-47 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Gene3D G3DSA:3.40.50.300 104 279 4.4E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 Pfam PF11638 DnaA N-terminal domain 1 60 1.4E-9 T 06-07-2017 IPR024633 DnaA N-terminal domain APT55_RS00005 8325b15526502e4c90a4d9dffb50c2c2 454 SUPERFAMILY SSF48295 350 447 6.02E-31 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 APT55_RS05235 92f59e547742a08766882e4e3c6d97a8 253 SUPERFAMILY SSF56784 1 227 1.04E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS05235 92f59e547742a08766882e4e3c6d97a8 253 Gene3D G3DSA:3.40.50.1000 106 227 6.7E-37 T 06-07-2017 IPR023214 HAD-like domain APT55_RS05235 92f59e547742a08766882e4e3c6d97a8 253 Gene3D G3DSA:3.40.50.1000 2 17 6.7E-37 T 06-07-2017 IPR023214 HAD-like domain APT55_RS05235 92f59e547742a08766882e4e3c6d97a8 253 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 203 8.9E-25 T 06-07-2017 IPR023214 HAD-like domain APT55_RS05235 92f59e547742a08766882e4e3c6d97a8 253 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 91 204 2.2E-13 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 Gene3D G3DSA:3.30.420.40 4 159 2.1E-45 T 06-07-2017 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 4 320 1.5E-132 T 06-07-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 Pfam PF00814 Glycoprotease family 23 313 8.6E-101 T 06-07-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 06-07-2017 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 5 313 8.2E-116 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 5 18 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 270 279 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 2.3E-47 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 2 338 64.574 T 06-07-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 SUPERFAMILY SSF53067 102 315 5.61E-49 T 06-07-2017 APT55_RS16870 247f31ebbee1b31622cbfa658edda172 346 SUPERFAMILY SSF53067 4 122 7.77E-30 T 06-07-2017 APT55_RS14945 44af79ed611c6d8e4dabb3a703723ca6 240 SUPERFAMILY SSF69593 17 234 1.27E-33 T 06-07-2017 APT55_RS14945 44af79ed611c6d8e4dabb3a703723ca6 240 Pfam PF01553 Acyltransferase 25 153 5.0E-21 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS14945 44af79ed611c6d8e4dabb3a703723ca6 240 Gene3D G3DSA:3.40.1130.10 26 203 2.4E-11 T 06-07-2017 APT55_RS14945 44af79ed611c6d8e4dabb3a703723ca6 240 SMART SM00563 35 156 3.2E-19 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 Pfam PF00675 Insulinase (Peptidase family M16) 24 166 1.9E-18 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 Gene3D G3DSA:3.30.830.10 243 418 1.5E-29 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 Gene3D G3DSA:3.30.830.10 14 222 1.2E-49 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 Pfam PF05193 Peptidase M16 inactive domain 176 356 1.7E-35 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 SUPERFAMILY SSF63411 240 425 1.5E-41 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS19275 f38f4ca48696bc1eaa1421c3cbe2db56 427 SUPERFAMILY SSF63411 13 227 3.21E-55 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS18930 1d601caf8b4aaa1f14bffdf07ff74f9c 84 SUPERFAMILY SSF52200 2 82 4.05E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS18930 1d601caf8b4aaa1f14bffdf07ff74f9c 84 Pfam PF13676 TIR domain 4 83 6.4E-21 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS18930 1d601caf8b4aaa1f14bffdf07ff74f9c 84 Gene3D G3DSA:3.40.50.10140 3 81 9.0E-19 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS01040 76a442cb8775a65fa3c6234298a1c5de 186 PIRSF PIRSF035170 5 185 6.8E-50 T 06-07-2017 IPR009218 Predicted HD phosphohydrolase APT55_RS01040 76a442cb8775a65fa3c6234298a1c5de 186 Gene3D G3DSA:1.10.3210.10 13 112 1.6E-6 T 06-07-2017 IPR006674 HD domain APT55_RS01040 76a442cb8775a65fa3c6234298a1c5de 186 SUPERFAMILY SSF109604 11 168 1.14E-24 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.90.640.10 225 310 6.7E-26 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:1.20.1270.10 535 602 3.3E-8 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 2.7E-271 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 383 402 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.3E-72 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 SUPERFAMILY SSF53067 186 377 2.53E-62 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:2.60.34.10 366 534 6.9E-76 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.30.30.30 54 102 9.0E-15 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 SUPERFAMILY SSF53067 4 183 2.13E-56 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 689 35.321 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.30.420.40 4 53 1.1E-58 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.30.420.40 119 191 1.1E-58 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Pfam PF00012 Hsp70 protein 4 603 7.3E-235 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.30.420.40 314 356 4.6E-31 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 Gene3D G3DSA:3.30.420.40 192 224 4.6E-31 T 06-07-2017 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 SUPERFAMILY SSF100920 379 535 1.22E-56 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS06605 51c97e5db9b7a47cf055ed16b4da12f5 832 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 Gene3D G3DSA:1.10.8.80 260 324 6.1E-12 T 06-07-2017 APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 Pfam PF01078 Magnesium chelatase, subunit ChlI 14 195 3.2E-13 T 06-07-2017 IPR000523 Magnesium chelatase ChlI domain APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 Gene3D G3DSA:3.40.50.300 12 209 1.2E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 SUPERFAMILY SSF52540 12 334 7.76E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 SMART SM00382 35 213 1.2E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 Pfam PF13519 von Willebrand factor type A domain 482 587 2.8E-15 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 SUPERFAMILY SSF53300 482 658 1.08E-25 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 SMART SM00327 479 668 5.1E-30 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 Gene3D G3DSA:3.40.50.410 482 662 6.9E-16 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS08930 2fbf6a5d2f24a84ef30610b414e2ef0b 678 TIGRFAM TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D 21 665 1.2E-244 T 06-07-2017 IPR011776 Magnesium chelatase, ATPase subunit D GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 625 773 1.5E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:3.30.450.20 184 290 4.2E-36 T 06-07-2017 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:1.20.120.160 973 1069 9.6E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF55874 567 749 1.96E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00387 625 777 7.0E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:3.30.450.40 293 493 8.1E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF00072 Response regulator receiver domain 810 918 2.7E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 699 1.9E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 PRINTS PR00344 Bacterial sensor protein C-terminal signature 720 738 1.9E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 713 1.9E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:1.10.287.130 508 563 1.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00065 319 487 4.0E-27 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:3.30.565.10 564 773 5.4E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:3.30.450.20 48 164 1.0E-22 T 06-07-2017 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF55781 298 483 3.71E-29 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF52172 806 929 8.82E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 62 171 2.3E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 177 297 4.2E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF55785 47 163 4.67E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF01590 GAF domain 319 477 1.6E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF47226 904 917 1.23E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF47226 962 1061 1.23E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00388 513 578 4.0E-26 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF13426 PAS domain 68 164 8.4E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF13426 PAS domain 184 289 4.2E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Pfam PF00512 His Kinase A (phospho-acceptor) domain 513 578 5.4E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF47384 499 579 9.81E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00091 57 123 7.1E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00091 173 242 1.8E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SUPERFAMILY SSF55785 182 290 7.09E-28 T 06-07-2017 IPR000014 PAS domain APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00448 808 921 3.5E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 Gene3D G3DSA:3.40.50.2300 805 926 1.2E-39 T 06-07-2017 APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00086 248 290 4.3E-15 T 06-07-2017 IPR001610 PAC motif APT55_RS00095 c2feea09e324651449e93b277da456ac 1074 SMART SM00086 129 165 190.0 T 06-07-2017 IPR001610 PAC motif APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 139 157 1.1E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 43 59 1.1E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 67 83 1.1E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 ProSitePatterns PS00818 Dps protein family signature 1. 43 59 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 PIRSF PIRSF005900 2 166 4.3E-49 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 Pfam PF00210 Ferritin-like domain 22 162 2.3E-28 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 Gene3D G3DSA:1.20.1260.10 6 163 1.7E-53 T 06-07-2017 IPR012347 Ferritin-related APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 ProSitePatterns PS00819 Dps protein family signature 2. 69 83 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS26645 7899b99c46a537e425d92b16ca4b2b5e 188 SUPERFAMILY SSF47240 4 162 6.72E-48 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS08125 4f84f25e3aa887e58522908f3500be91 331 PIRSF PIRSF037221 8 331 2.7E-66 T 06-07-2017 IPR010903 Protein of unknown function DUF1517 APT55_RS08125 4f84f25e3aa887e58522908f3500be91 331 Pfam PF07466 Protein of unknown function (DUF1517) 42 329 1.8E-66 T 06-07-2017 IPR010903 Protein of unknown function DUF1517 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 Gene3D G3DSA:3.30.1280.10 4 84 6.3E-35 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 5 83 4.6E-31 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 SUPERFAMILY SSF82697 3 81 1.62E-28 T 06-07-2017 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 5 82 22.318 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 13 83 7.0E-28 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06895 9388a1057ded4039cd1538bc79ecafef 88 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 6 82 5.1E-32 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS20860 2ed8ed1c2796983d384a1ef9ea5fe172 169 SUPERFAMILY SSF46458 1 164 3.26E-55 T 06-07-2017 IPR009050 Globin-like APT55_RS20860 2ed8ed1c2796983d384a1ef9ea5fe172 169 Pfam PF00502 Phycobilisome protein 8 164 1.1E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS20860 2ed8ed1c2796983d384a1ef9ea5fe172 169 PIRSF PIRSF000081 1 168 3.7E-65 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS20860 2ed8ed1c2796983d384a1ef9ea5fe172 169 Gene3D G3DSA:1.10.490.20 1 164 7.0E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS20860 2ed8ed1c2796983d384a1ef9ea5fe172 169 TIGRFAM TIGR01337 apcB: allophycocyanin, beta subunit 2 168 2.6E-77 T 06-07-2017 IPR006245 Allophycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 Gene3D G3DSA:3.40.50.300 17 200 4.0E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 89 107 3.0E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 22 42 3.0E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 SUPERFAMILY SSF54814 192 306 8.5E-38 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 Pfam PF01926 50S ribosome-binding GTPase 22 136 2.3E-23 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 21 177 3.6E-25 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 TIGRFAM TIGR00436 era: GTP-binding protein Era 20 288 1.2E-99 T 06-07-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 Hamap MF_00367 GTPase Era [era]. 17 305 34.333 T 06-07-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 SUPERFAMILY SSF52540 22 216 2.38E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 Pfam PF07650 KH domain 218 294 5.8E-16 T 06-07-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS20120 9174b71f0c96c99570b366cf5dec5111 310 Gene3D G3DSA:3.30.300.20 201 300 1.7E-34 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS20105 675ebe9afa96c54f867b7a2dc4fe2016 121 SUPERFAMILY SSF54593 14 120 1.07E-14 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS20105 675ebe9afa96c54f867b7a2dc4fe2016 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 83 2.5E-5 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS20105 675ebe9afa96c54f867b7a2dc4fe2016 121 Gene3D G3DSA:3.10.180.10 2 120 1.1E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 SMART SM01230 191 476 1.2E-48 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 336 351 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 SUPERFAMILY SSF55931 458 603 7.06E-72 T 06-07-2017 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 SUPERFAMILY SSF55931 181 415 7.06E-72 T 06-07-2017 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 Pfam PF00120 Glutamine synthetase, catalytic domain 208 370 8.7E-20 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 Pfam PF12437 Glutamine synthetase type III N terminal 29 190 8.0E-69 T 06-07-2017 IPR022147 Glutamine synthetase type III N-terminal GO:0004356 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 Gene3D G3DSA:3.30.590.10 458 600 1.3E-83 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT55_RS18675 7dcae533677814793ca17c215ed8bd56 723 Gene3D G3DSA:3.30.590.10 207 415 1.3E-83 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 SUPERFAMILY SSF51735 138 290 9.92E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 132 1.7E-35 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 Gene3D G3DSA:3.40.50.720 169 290 5.3E-9 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 SMART SM00829 11 325 0.0019 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 SUPERFAMILY SSF50129 1 157 1.19E-52 T 06-07-2017 IPR011032 GroES-like APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 Gene3D G3DSA:3.90.180.10 1 168 2.2E-60 T 06-07-2017 IPR011032 GroES-like APT55_RS06665 b77d4f0c33eaaf01862b9a6e47791f9b 329 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 13 325 1.4E-96 T 06-07-2017 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 APT55_RS18925 ebc6469c3109bdf062eab7a30e084e5d 86 Pfam PF05917 Helicobacter pylori protein of unknown function (DUF874) 16 84 1.1E-5 T 06-07-2017 IPR008592 Protein of unknown function DUF874 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 Gene3D G3DSA:1.10.287.130 134 191 1.1E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 SMART SM00387 253 365 1.9E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 Pfam PF00512 His Kinase A (phospho-acceptor) domain 141 206 8.5E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 SMART SM00388 140 207 2.3E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 SUPERFAMILY SSF55874 197 363 6.94E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 253 364 8.9E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 Gene3D G3DSA:3.30.565.10 192 364 1.6E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 318 7.4E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 290 304 7.4E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 7.4E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 362 7.4E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18855 4679af9334ab820ab0c35eb9ad7db23e 365 SUPERFAMILY SSF47384 130 206 3.53E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22455 f1badad393458eff9c0cba3e246b9c9e 201 Pfam PF13023 HD domain 18 170 1.6E-53 T 06-07-2017 IPR006674 HD domain APT55_RS22455 f1badad393458eff9c0cba3e246b9c9e 201 Gene3D G3DSA:1.10.3210.10 6 190 8.9E-40 T 06-07-2017 IPR006674 HD domain APT55_RS22455 f1badad393458eff9c0cba3e246b9c9e 201 SUPERFAMILY SSF109604 9 183 1.26E-42 T 06-07-2017 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 409 466 1.7E-10 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Gene3D G3DSA:3.40.120.10 188 261 5.3E-21 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 164 268 3.6E-20 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 10 145 8.0E-36 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 SUPERFAMILY SSF55957 389 474 7.19E-22 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 288 381 1.1E-21 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 217 230 9.0E-12 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 248 263 9.0E-12 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 104 118 9.0E-12 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 186 205 9.0E-12 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 105 114 - T 06-07-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 SUPERFAMILY SSF53738 162 270 2.32E-23 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Gene3D G3DSA:3.30.310.50 402 474 6.2E-20 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 SUPERFAMILY SSF53738 5 174 7.06E-42 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 SUPERFAMILY SSF53738 256 386 4.32E-29 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Gene3D G3DSA:3.40.120.10 6 181 9.5E-44 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS25625 81d8429c2471ecac3d133a1e0f45a6fb 476 Gene3D G3DSA:3.40.120.10 262 386 6.9E-28 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 7.1E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Gene3D G3DSA:1.10.10.10 122 223 2.4E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SUPERFAMILY SSF52172 1 178 5.69E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SMART SM00862 144 220 2.2E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Gene3D G3DSA:1.20.120.160 257 338 4.4E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SMART SM00448 1 112 5.0E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SMART SM00448 370 483 6.4E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Gene3D G3DSA:3.40.50.2300 1 118 4.9E-38 T 06-07-2017 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Pfam PF00072 Response regulator receiver domain 372 483 1.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Pfam PF00072 Response regulator receiver domain 3 113 3.3E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Pfam PF01627 Hpt domain 247 336 6.1E-12 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 Gene3D G3DSA:3.40.50.2300 369 495 8.5E-32 T 06-07-2017 APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SUPERFAMILY SSF52172 368 496 5.98E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05410 1a741ce2a6d69cfd8e9e9a97eaa24615 504 SUPERFAMILY SSF47226 244 338 6.41E-10 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS15485 4ef8339261a756f14bddd5e22a6eed3d 133 SUPERFAMILY SSF48403 24 115 4.64E-16 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS15485 4ef8339261a756f14bddd5e22a6eed3d 133 SMART SM00248 58 87 0.0013 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 APT55_RS15485 4ef8339261a756f14bddd5e22a6eed3d 133 Pfam PF12796 Ankyrin repeats (3 copies) 24 88 3.0E-8 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS15485 4ef8339261a756f14bddd5e22a6eed3d 133 Gene3D G3DSA:1.25.40.20 21 114 3.2E-14 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS19040 8f17cc08f5d220e5192e5f23b8371f91 172 Pfam PF12046 Protein of unknown function (DUF3529) 6 170 1.1E-68 T 06-07-2017 IPR021919 Cofactor assembly of complex C subunit B, CCB1 APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 SMART SM00382 49 231 3.1E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 40 269 5.0E-123 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 SUPERFAMILY SSF52540 19 245 1.03E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 Gene3D G3DSA:3.40.50.300 18 240 3.1E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12115 4561204545168dbcce3cd6185e56412e 278 Pfam PF00005 ABC transporter 40 181 1.1E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 131 145 - T 06-07-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 Pfam PF00849 RNA pseudouridylate synthase 86 241 4.6E-34 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 SUPERFAMILY SSF55174 10 98 1.08E-11 T 06-07-2017 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 SUPERFAMILY SSF55120 71 302 1.15E-72 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 8 301 2.3E-96 T 06-07-2017 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 SMART SM00363 11 76 5.3E-11 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 Pfam PF01479 S4 domain 12 58 2.4E-10 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS26740 8e72c09484136ff81cdb2d8d3a573286 307 Gene3D G3DSA:3.10.290.10 11 60 2.8E-14 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 SUPERFAMILY SSF52374 26 290 6.1E-99 T 06-07-2017 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Pfam PF02569 Pantoate-beta-alanine ligase 3 287 7.2E-103 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Gene3D G3DSA:3.40.50.620 3 184 1.3E-71 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 289 8.2E-105 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 SUPERFAMILY SSF52540 294 512 2.99E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Gene3D G3DSA:3.40.50.300 297 510 1.2E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Hamap MF_00158 Pantothenate synthetase [panC]. 2 289 39.511 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 34 85 7.7E-9 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Hamap MF_00238 Cytidylate kinase [cmk]. 294 513 32.797 T 06-07-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Pfam PF02224 Cytidylate kinase 296 510 8.1E-76 T 06-07-2017 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Gene3D G3DSA:3.30.1300.10 185 296 2.5E-32 T 06-07-2017 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 Hamap MF_01349 Bifunctional pantoate ligase/cytidylate kinase [panC/cmk]. 35 516 49.877 T 06-07-2017 IPR024894 Bifunctional pantoate ligase/cytidylate kinase GO:0004127|GO:0004592|GO:0005524|GO:0006139|GO:0015940 KEGG: 00240+2.7.4.14|KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|MetaCyc: PWY-7176 APT55_RS08805 e3e424e0b160439c1e688289876571ef 523 TIGRFAM TIGR00017 cmk: cytidylate kinase 293 507 8.6E-81 T 06-07-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 SUPERFAMILY SSF56059 219 476 9.3E-53 T 06-07-2017 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 SMART SM01207 14 177 5.7E-7 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 SUPERFAMILY SSF52009 841 943 1.31E-25 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Gene3D G3DSA:3.30.1490.20 262 337 2.9E-18 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 263 453 9.2E-39 T 06-07-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Gene3D G3DSA:3.30.470.20 340 470 3.9E-24 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Pfam PF02660 Glycerol-3-phosphate acyltransferase 16 180 1.2E-13 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Pfam PF00391 PEP-utilising enzyme, mobile domain 870 940 1.5E-19 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS13090 6abf172cdf452d3535d237946248332f 948 Gene3D G3DSA:3.50.30.10 842 942 7.4E-24 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 SUPERFAMILY SSF46894 144 210 5.44E-17 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 SMART SM00421 149 206 2.1E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 SUPERFAMILY SSF52172 9 143 3.56E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 SMART SM00448 9 122 1.5E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 Pfam PF00072 Response regulator receiver domain 11 122 7.7E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 Gene3D G3DSA:3.40.50.2300 8 139 4.2E-40 T 06-07-2017 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 2.1E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 2.1E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 2.1E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 Gene3D G3DSA:1.10.10.10 148 210 2.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27735 d369ded453c9a52a055aa35ded1039d0 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 205 7.4E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS10545 adeaab8e6d3d5366ec98275592c218e1 456 Gene3D G3DSA:3.40.710.10 29 341 5.1E-74 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS10545 adeaab8e6d3d5366ec98275592c218e1 456 Pfam PF00144 Beta-lactamase 39 341 1.3E-64 T 06-07-2017 IPR001466 Beta-lactamase-related APT55_RS10545 adeaab8e6d3d5366ec98275592c218e1 456 ProSitePatterns PS00336 Beta-lactamase class-C active site. 77 84 - T 06-07-2017 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 APT55_RS10545 adeaab8e6d3d5366ec98275592c218e1 456 Pfam PF11954 Domain of unknown function (DUF3471) 364 447 3.4E-15 T 06-07-2017 IPR021860 Peptidase S12, Pab87-related, C-terminal APT55_RS10545 adeaab8e6d3d5366ec98275592c218e1 456 SUPERFAMILY SSF56601 38 349 1.18E-70 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF03725 3' exoribonuclease family, domain 2 146 209 8.7E-18 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF50249 629 712 2.96E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF54791 564 649 3.73E-22 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 702 29.225 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF55666 143 230 1.2E-27 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 328 1.4E-15 T 06-07-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Gene3D G3DSA:1.10.10.400 232 322 4.6E-22 T 06-07-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF01138 3' exoribonuclease family, domain 1 12 142 1.2E-17 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF01138 3' exoribonuclease family, domain 1 331 465 1.9E-17 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Gene3D G3DSA:3.30.1370.10 560 628 2.9E-24 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 698 3.3E-288 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF00013 KH domain 566 622 1.4E-12 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF54211 300 496 7.59E-47 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Gene3D G3DSA:3.30.230.70 323 552 3.2E-81 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Gene3D G3DSA:3.30.230.70 3 223 1.6E-78 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF54211 3 142 1.06E-44 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Gene3D G3DSA:2.40.50.140 629 698 5.2E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 Pfam PF00575 S1 RNA binding domain 628 697 3.0E-16 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SMART SM00316 629 699 2.4E-20 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SMART SM00322 561 626 5.4E-13 T 06-07-2017 IPR004087 K Homology domain GO:0003676 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 SUPERFAMILY SSF55666 459 558 3.27E-26 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT55_RS03765 d2e7fd9937c16d772b5011684faa14f4 715 PIRSF PIRSF005499 1 715 3.6E-282 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 SUPERFAMILY SSF64484 9 1062 0.0 T 06-07-2017 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 1 1063 12.692 T 06-07-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF10385 RNA polymerase beta subunit external 1 domain 450 517 3.1E-15 T 06-07-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:2.40.50.150 682 814 4.7E-61 T 06-07-2017 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:3.90.1110.10 132 303 9.0E-66 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF04561 RNA polymerase Rpb2, domain 2 130 313 1.5E-56 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF04560 RNA polymerase Rpb2, domain 7 987 1061 5.8E-25 T 06-07-2017 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 193 792 0.0 T 06-07-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:2.40.270.10 648 675 1.5E-80 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:2.40.270.10 815 963 1.5E-80 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF04565 RNA polymerase Rpb2, domain 3 372 440 5.5E-30 T 06-07-2017 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF04563 RNA polymerase beta subunit 17 357 3.1E-21 T 06-07-2017 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Pfam PF00562 RNA polymerase Rpb2, domain 6 579 985 3.8E-160 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 ProSitePatterns PS01166 RNA polymerases beta chain signature. 818 830 - T 06-07-2017 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:2.40.50.100 575 647 2.5E-28 T 06-07-2017 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:3.90.1100.10 520 574 8.4E-151 T 06-07-2017 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:3.90.1100.10 304 450 8.4E-151 T 06-07-2017 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:3.90.1100.10 12 130 8.4E-151 T 06-07-2017 APT55_RS00175 6847db3d17fdc143f4fe780241bdce67 1106 Gene3D G3DSA:2.30.150.10 451 517 7.1E-15 T 06-07-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 Gene3D G3DSA:1.20.1250.20 241 454 7.0E-6 T 06-07-2017 APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 Gene3D G3DSA:1.20.1250.20 126 222 5.6E-7 T 06-07-2017 APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 Gene3D G3DSA:1.20.1250.20 15 91 5.6E-7 T 06-07-2017 APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 SUPERFAMILY SSF103473 129 454 2.22E-22 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 SUPERFAMILY SSF103473 3 95 2.22E-22 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS06910 1f6a0ad346f75cf940653a49e7449f2e 457 Pfam PF13000 Acetyl-coenzyme A transporter 1 31 177 3.7E-15 T 06-07-2017 IPR024371 Acetyl-coenzyme A transporter 1 GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 Gene3D G3DSA:3.40.50.300 99 347 2.4E-99 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 SUPERFAMILY SSF117916 26 98 1.08E-9 T 06-07-2017 APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 Hamap MF_02040 Iron-sulfur cluster carrier protein. 98 364 36.72 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 Pfam PF01883 Domain of unknown function DUF59 29 93 9.4E-9 T 06-07-2017 IPR002744 Domain of unknown function DUF59 APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 103 348 1.6E-96 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 SUPERFAMILY SSF52540 97 334 1.63E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25455 b64fd664cd010085faaf457430c38e63 365 ProSitePatterns PS01215 Mrp family signature. 213 229 - T 06-07-2017 IPR000808 Mrp, conserved site GO:0005524 APT55_RS07160 56954738b0e5128d6c5ed50ee86149e1 398 Gene3D G3DSA:3.40.50.2000 182 368 4.7E-16 T 06-07-2017 APT55_RS07160 56954738b0e5128d6c5ed50ee86149e1 398 Pfam PF13439 Glycosyltransferase Family 4 19 197 1.3E-19 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS07160 56954738b0e5128d6c5ed50ee86149e1 398 SUPERFAMILY SSF53756 18 391 2.78E-63 T 06-07-2017 APT55_RS07160 56954738b0e5128d6c5ed50ee86149e1 398 Pfam PF13692 Glycosyl transferases group 1 211 355 1.1E-26 T 06-07-2017 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 98 114 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 SUPERFAMILY SSF55620 31 220 1.7E-85 T 06-07-2017 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 146 156 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 Gene3D G3DSA:3.30.1130.10 91 221 2.3E-69 T 06-07-2017 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 41 220 5.8E-89 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 Gene3D G3DSA:1.10.286.10 38 88 3.7E-24 T 06-07-2017 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 Pfam PF01227 GTP cyclohydrolase I 43 218 5.6E-80 T 06-07-2017 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07190 9a555636329cd7caa478f97fc6a67110 225 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 37 219 41.756 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS27835 cd0d1d30acb6394fb6185c897fe3f436 292 SUPERFAMILY SSF53448 5 229 1.41E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27835 cd0d1d30acb6394fb6185c897fe3f436 292 Gene3D G3DSA:3.90.550.10 5 224 2.5E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27835 cd0d1d30acb6394fb6185c897fe3f436 292 Pfam PF00535 Glycosyl transferase family 2 8 94 8.1E-23 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 Pfam PF04452 RNA methyltransferase 20 225 3.1E-59 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 6 229 1.1E-52 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 Gene3D G3DSA:3.40.1280.10 4 230 1.7E-64 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 PIRSF PIRSF015601 3 231 5.7E-66 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 SUPERFAMILY SSF88697 4 57 3.81E-10 T 06-07-2017 IPR015947 PUA-like domain APT55_RS26025 361b2427aae714fd5df3a812f0c9c182 237 SUPERFAMILY SSF75217 71 227 2.15E-41 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS23090 081df882321e401ca489fad15b12893b 387 SUPERFAMILY SSF103481 124 231 4.05E-12 T 06-07-2017 APT55_RS23090 081df882321e401ca489fad15b12893b 387 Pfam PF00892 EamA-like transporter family 114 228 1.6E-6 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS23090 081df882321e401ca489fad15b12893b 387 Pfam PF00892 EamA-like transporter family 240 376 2.9E-14 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS23090 081df882321e401ca489fad15b12893b 387 SUPERFAMILY SSF103481 301 379 1.7E-11 T 06-07-2017 APT55_RS12395 aa732f219d12395f226468765af01942 476 Pfam PF14403 Circularly permuted ATP-grasp type 2 78 453 4.1E-163 T 06-07-2017 IPR025841 Circularly permuted ATP-grasp type 2 APT55_RS12395 aa732f219d12395f226468765af01942 476 SUPERFAMILY SSF56059 323 468 5.06E-64 T 06-07-2017 APT55_RS12395 aa732f219d12395f226468765af01942 476 SUPERFAMILY SSF56059 21 216 5.06E-64 T 06-07-2017 APT55_RS12395 aa732f219d12395f226468765af01942 476 PIRSF PIRSF005522 1 476 3.6E-230 T 06-07-2017 IPR016450 Uncharacterised conserved protein UCP005522 APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 SMART SM00419 143 192 1.6E-10 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 ProSitePatterns PS00042 Crp-type HTH domain signature. 151 174 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 Gene3D G3DSA:1.10.10.10 121 192 4.9E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 SUPERFAMILY SSF51206 35 99 7.77E-7 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 Pfam PF13545 Crp-like helix-turn-helix domain 124 190 4.0E-14 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS24215 5f16c674e76c219334d830069240a2fe 204 SUPERFAMILY SSF46785 122 182 1.03E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 47 80 79.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 127 160 200.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 87 120 10.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 207 240 1.6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 287 320 140.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SMART SM00028 167 200 1.5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SUPERFAMILY SSF48452 46 156 1.5E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 SUPERFAMILY SSF48452 125 335 3.26E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 Gene3D G3DSA:1.25.40.10 183 336 1.6E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 Gene3D G3DSA:1.25.40.10 47 182 5.7E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 Pfam PF13424 Tetratricopeptide repeat 57 118 4.2E-8 T 06-07-2017 APT55_RS16360 b6796b386eea97443dc22ef521e6a28e 346 Pfam PF13424 Tetratricopeptide repeat 130 197 4.1E-9 T 06-07-2017 APT55_RS20745 061b1600b9a4d9c1b927a44d36e0d844 428 SUPERFAMILY SSF53383 14 415 2.12E-68 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS20745 061b1600b9a4d9c1b927a44d36e0d844 428 Gene3D G3DSA:3.40.640.10 60 306 2.4E-54 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS20745 061b1600b9a4d9c1b927a44d36e0d844 428 Pfam PF00155 Aminotransferase class I and II 43 409 2.1E-33 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS20745 061b1600b9a4d9c1b927a44d36e0d844 428 Gene3D G3DSA:3.90.1150.10 307 413 9.7E-20 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 Gene3D G3DSA:3.30.1370.50 518 578 9.2E-9 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 Gene3D G3DSA:3.40.50.300 116 247 8.0E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 SMART SM00382 122 278 3.8E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 SUPERFAMILY SSF52540 19 267 6.0E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 SUPERFAMILY SSF82708 534 578 2.16E-9 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 Pfam PF13604 AAA domain 115 212 2.8E-6 T 06-07-2017 APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 SMART SM00393 501 579 1.4E-18 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS02235 a33df3db3ad82fc0e2d484bc61c91315 579 Pfam PF01424 R3H domain 526 577 4.7E-10 T 06-07-2017 IPR001374 R3H domain GO:0003676 APT55_RS31805 7323ffd965c6a73936d80192b9eceed7 1134 Pfam PF08706 D5 N terminal like 432 555 5.0E-14 T 06-07-2017 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal APT55_RS31805 7323ffd965c6a73936d80192b9eceed7 1134 SMART SM00885 412 556 2.1E-11 T 06-07-2017 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Pfam PF00498 FHA domain 1359 1438 1.4E-9 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SUPERFAMILY SSF52540 379 623 1.21E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SUPERFAMILY SSF48452 1156 1218 1.73E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SUPERFAMILY SSF49879 1336 1447 2.24E-13 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Pfam PF12770 CHAT domain 84 328 6.7E-20 T 06-07-2017 IPR024983 CHAT domain APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Pfam PF13424 Tetratricopeptide repeat 930 1001 3.9E-11 T 06-07-2017 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Gene3D G3DSA:1.25.40.10 885 1010 5.7E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Gene3D G3DSA:1.25.40.10 1011 1219 1.2E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 930 963 97.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 890 923 0.21 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 1179 1218 370.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 815 848 15.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 1050 1083 110.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 1010 1043 5.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SMART SM00028 970 1003 1.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SUPERFAMILY SSF48452 929 1124 6.32E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Gene3D G3DSA:2.60.200.20 1335 1447 7.3E-14 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 SUPERFAMILY SSF48452 795 925 2.47E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Gene3D G3DSA:3.40.50.300 381 533 1.9E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Pfam PF13191 AAA ATPase domain 386 521 1.4E-8 T 06-07-2017 APT55_RS27540 7e6dc3a3a7b7ac0aa48a36c1c243a4ef 1449 Gene3D G3DSA:1.25.40.10 781 881 5.9E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30755 7614bd8a84b626adc3a44c7e8c5948a6 319 PIRSF PIRSF035042 1 319 2.8E-95 T 06-07-2017 IPR010350 Thioredoxin-like ferredoxin, bacteria APT55_RS30755 7614bd8a84b626adc3a44c7e8c5948a6 319 Gene3D G3DSA:3.40.30.10 134 211 3.8E-12 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS30755 7614bd8a84b626adc3a44c7e8c5948a6 319 SUPERFAMILY SSF52833 135 211 1.03E-9 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS30755 7614bd8a84b626adc3a44c7e8c5948a6 319 Pfam PF06999 Sucrase/ferredoxin-like 17 223 6.1E-26 T 06-07-2017 IPR009737 Thioredoxin-like ferredoxin APT55_RS17040 bbd7e07a1fb95ca737960a4dad3eebfb 197 SUPERFAMILY SSF55961 53 191 3.02E-16 T 06-07-2017 APT55_RS17040 bbd7e07a1fb95ca737960a4dad3eebfb 197 Gene3D G3DSA:3.30.530.20 56 191 5.8E-9 T 06-07-2017 IPR023393 START-like domain APT55_RS17040 bbd7e07a1fb95ca737960a4dad3eebfb 197 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 63 189 3.9E-10 T 06-07-2017 IPR005031 Coenzyme Q-binding protein COQ10, START domain APT55_RS11205 2dcbd21edb05f21ae0f1bcc03dde61c8 164 Pfam PF00583 Acetyltransferase (GNAT) family 46 125 1.0E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS11205 2dcbd21edb05f21ae0f1bcc03dde61c8 164 SUPERFAMILY SSF55729 1 156 6.32E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11205 2dcbd21edb05f21ae0f1bcc03dde61c8 164 Gene3D G3DSA:3.40.630.30 1 155 4.2E-33 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11205 2dcbd21edb05f21ae0f1bcc03dde61c8 164 PIRSF PIRSF037663 1 158 1.5E-68 T 06-07-2017 IPR017255 Acetyltransferase, GNAT, predicted APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82866 804 1036 1.23E-41 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:3.30.2090.10 184 266 1.5E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:3.30.2090.10 723 805 2.0E-12 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:3.30.70.1320 271 301 4.7E-11 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:3.30.70.1320 155 180 4.7E-11 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82714 722 806 6.15E-13 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82714 185 266 2.88E-13 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82693 42 127 5.75E-22 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Pfam PF00873 AcrB/AcrD/AcrF family 4 1032 5.0E-225 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:3.30.70.1430 42 140 8.4E-28 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:1.20.1640.10 302 498 1.5E-53 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82866 291 494 5.49E-40 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 Gene3D G3DSA:1.10.3850.10 811 1035 2.0E-55 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82693 269 326 1.46E-14 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 SUPERFAMILY SSF82693 151 183 1.46E-14 T 06-07-2017 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24645 89f3aa8e4621a445da0002adeb6403be 1063 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.6E-36 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 ProSitePatterns PS00818 Dps protein family signature 1. 49 65 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 Pfam PF00210 Ferritin-like domain 29 167 3.8E-28 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 SUPERFAMILY SSF47240 14 167 5.78E-42 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 Gene3D G3DSA:1.20.1260.10 4 173 8.0E-52 T 06-07-2017 IPR012347 Ferritin-related APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 ProSitePatterns PS00819 Dps protein family signature 2. 75 89 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS30770 60539bf6b6e77df38dcd621abb5bb0ea 176 PIRSF PIRSF005900 9 173 2.1E-37 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Gene3D G3DSA:1.10.287.130 175 206 1.4E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Gene3D G3DSA:1.10.287.130 244 273 1.4E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 SUPERFAMILY SSF55874 267 443 1.44E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Pfam PF07701 Heme NO binding associated 87 171 1.1E-15 T 06-07-2017 IPR011645 Haem NO binding associated GO:0004383|GO:0006182 KEGG: 00230+4.6.1.2 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Pfam PF07701 Heme NO binding associated 12 85 2.1E-16 T 06-07-2017 IPR011645 Haem NO binding associated GO:0004383|GO:0006182 KEGG: 00230+4.6.1.2 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 SMART SM00387 322 444 1.9E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 SMART SM00388 180 277 4.2E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Gene3D G3DSA:3.30.565.10 275 443 2.5E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 276 5.5E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 442 2.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 2.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 2.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 2.9E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 442 2.1E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 SUPERFAMILY SSF47384 170 215 2.16E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20180 3f5258dd6fdf534e877c51d145373b5d 444 SUPERFAMILY SSF47384 245 276 2.16E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 Pfam PF00312 Ribosomal protein S15 8 88 1.2E-32 T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 SMART SM01387 8 88 1.1E-44 T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.253 T 06-07-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 SUPERFAMILY SSF47060 3 88 2.94E-32 T 06-07-2017 IPR009068 S15/NS1, RNA-binding APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 Gene3D G3DSA:1.10.287.10 3 88 4.3E-35 T 06-07-2017 IPR009068 S15/NS1, RNA-binding APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 88 1.5E-38 T 06-07-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 89 7.0E-27 T 06-07-2017 APT55_RS22880 1d19468cd2df6618155f4339afa13355 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 Gene3D G3DSA:3.40.710.10 91 289 4.2E-45 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 168 182 8.9E-21 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 102 121 8.9E-21 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 245 258 8.9E-21 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 183 197 8.9E-21 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 SUPERFAMILY SSF56601 67 289 7.19E-46 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 132 288 5.5E-34 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS16075 a775cb1f05327c30a6e9622c74b2c0a5 294 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 63 119 1.4E-11 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS03955 d6ecebbffebaea7566dca6be7ce7d588 169 Pfam PF01584 CheW-like domain 25 162 7.0E-22 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS03955 d6ecebbffebaea7566dca6be7ce7d588 169 SUPERFAMILY SSF50341 24 163 9.02E-24 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS03955 d6ecebbffebaea7566dca6be7ce7d588 169 SMART SM00260 20 161 3.7E-16 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS23015 9df4b675db337cca73b7b98ba74afe43 262 Pfam PF00483 Nucleotidyl transferase 3 177 7.6E-7 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT55_RS23015 9df4b675db337cca73b7b98ba74afe43 262 Gene3D G3DSA:3.90.550.10 1 256 1.3E-46 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS23015 9df4b675db337cca73b7b98ba74afe43 262 SUPERFAMILY SSF53448 1 256 2.5E-48 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 Gene3D G3DSA:1.25.40.10 369 561 4.8E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 Pfam PF13424 Tetratricopeptide repeat 379 452 1.1E-10 T 06-07-2017 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 Pfam PF13424 Tetratricopeptide repeat 461 537 1.7E-21 T 06-07-2017 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 SMART SM00028 463 496 0.0082 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 SMART SM00028 505 538 2.5E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 SMART SM00028 421 454 0.044 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 Pfam PF00931 NB-ARC domain 4 216 2.3E-13 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 SUPERFAMILY SSF48452 421 560 3.16E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 PRINTS PR00364 Disease resistance protein signature 184 198 6.4E-9 T 06-07-2017 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 PRINTS PR00364 Disease resistance protein signature 100 114 6.4E-9 T 06-07-2017 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 PRINTS PR00364 Disease resistance protein signature 22 37 6.4E-9 T 06-07-2017 APT55_RS00445 8eb2f61ca439412009764c144dd3b4a0 597 SUPERFAMILY SSF52540 1 254 7.73E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 53 515 1.3E-167 T 06-07-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Gene3D G3DSA:1.10.10.10 387 569 1.4E-52 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SUPERFAMILY SSF52540 48 242 8.27E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SUPERFAMILY SSF52540 250 508 9.49E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Gene3D G3DSA:1.10.150.80 582 657 4.2E-23 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF00271 Helicase conserved C-terminal domain 273 373 5.0E-17 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SMART SM00487 59 260 3.9E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF00570 HRDC domain 585 651 5.8E-21 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SUPERFAMILY SSF47819 582 658 1.31E-23 T 06-07-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Gene3D G3DSA:3.40.50.300 47 244 4.4E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SMART SM00956 460 566 3.8E-44 T 06-07-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SMART SM00341 581 661 2.9E-18 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 SMART SM00490 292 373 2.8E-28 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF14493 Helix-turn-helix domain 698 784 2.9E-22 T 06-07-2017 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF16124 RecQ zinc-binding 384 453 2.0E-16 T 06-07-2017 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Gene3D G3DSA:3.40.50.300 248 386 2.1E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF00270 DEAD/DEAH box helicase 65 230 2.8E-17 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 Pfam PF09382 RQC domain 458 569 2.6E-33 T 06-07-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APT55_RS12980 000b5d77fe5ac69aabf0330731101cfd 793 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 51 653 1.9E-226 T 06-07-2017 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 APT55_RS16095 fb5a478d60aa6174775bb64ccc2a6b00 383 TIGRFAM TIGR01185 devC: ABC exporter transmembrane subunit, DevC protein 6 383 4.8E-153 T 06-07-2017 IPR005891 DevC protein APT55_RS16095 fb5a478d60aa6174775bb64ccc2a6b00 383 PIRSF PIRSF031773 1 383 8.8E-159 T 06-07-2017 IPR005891 DevC protein APT55_RS16095 fb5a478d60aa6174775bb64ccc2a6b00 383 Pfam PF02687 FtsX-like permease family 268 375 2.4E-14 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 402 473 1.0E-13 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS30550 d950e51cd42f5467f415972255909446 481 SUPERFAMILY SSF54292 359 480 2.23E-23 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Pfam PF00498 FHA domain 29 93 3.8E-18 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 208 217 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 336 344 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 158 168 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 245 264 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 177 184 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 282 293 4.1E-9 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 SUPERFAMILY SSF49879 24 109 9.37E-24 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Gene3D G3DSA:2.40.30.10 128 235 6.8E-22 T 06-07-2017 APT55_RS30550 d950e51cd42f5467f415972255909446 481 SMART SM00240 28 78 4.3E-10 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Gene3D G3DSA:2.60.200.20 11 111 4.9E-24 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Pfam PF00175 Oxidoreductase NAD-binding domain 246 349 1.8E-14 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 430 438 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS30550 d950e51cd42f5467f415972255909446 481 SUPERFAMILY SSF63380 121 238 3.56E-23 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Gene3D G3DSA:3.10.20.30 366 480 3.1E-28 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS30550 d950e51cd42f5467f415972255909446 481 SUPERFAMILY SSF52343 229 366 1.96E-33 T 06-07-2017 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Pfam PF00970 Oxidoreductase FAD-binding domain 137 234 1.7E-9 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 APT55_RS30550 d950e51cd42f5467f415972255909446 481 Gene3D G3DSA:3.40.50.80 242 365 3.2E-34 T 06-07-2017 APT55_RS26760 1ccc9b9b0fce25a1bb18f3943ab51b3b 242 SUPERFAMILY SSF53800 4 227 5.78E-28 T 06-07-2017 APT55_RS26760 1ccc9b9b0fce25a1bb18f3943ab51b3b 242 Gene3D G3DSA:3.40.50.1400 3 120 4.7E-28 T 06-07-2017 APT55_RS26760 1ccc9b9b0fce25a1bb18f3943ab51b3b 242 Gene3D G3DSA:3.40.50.1400 124 227 1.7E-15 T 06-07-2017 APT55_RS26760 1ccc9b9b0fce25a1bb18f3943ab51b3b 242 Pfam PF01903 CbiX 130 223 2.7E-14 T 06-07-2017 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 APT55_RS26760 1ccc9b9b0fce25a1bb18f3943ab51b3b 242 Pfam PF01903 CbiX 10 114 3.2E-16 T 06-07-2017 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Gene3D G3DSA:3.90.190.20 308 443 3.7E-34 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Pfam PF01225 Mur ligase family, catalytic domain 29 75 1.3E-12 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Pfam PF02875 Mur ligase family, glutamate ligase domain 308 387 1.6E-10 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Gene3D G3DSA:3.40.1390.10 23 94 4.8E-23 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 444 33.353 T 06-07-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Pfam PF08245 Mur ligase middle domain 110 288 1.5E-46 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 SUPERFAMILY SSF63418 6 102 3.14E-24 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 443 5.0E-130 T 06-07-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 SUPERFAMILY SSF53244 308 443 1.26E-29 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 SUPERFAMILY SSF53623 104 302 9.29E-52 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS27285 d3bd02df504149f25f89975add9e5167 445 Gene3D G3DSA:3.40.1190.10 95 303 1.6E-63 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 74 108 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 SUPERFAMILY SSF46785 19 148 4.2E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 1.6E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 1.6E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 1.6E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.6E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 Gene3D G3DSA:1.10.10.10 20 148 1.7E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 SMART SM00347 35 135 2.0E-30 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS26100 1ac604d418ee44805e3e05ac3fe324af 150 Pfam PF01047 MarR family 42 99 8.4E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SUPERFAMILY SSF55785 235 361 2.27E-24 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Pfam PF13426 PAS domain 393 489 1.5E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Pfam PF01590 GAF domain 49 197 4.5E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Pfam PF00512 His Kinase A (phospho-acceptor) domain 511 579 6.3E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00387 624 734 1.7E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00065 49 207 3.3E-31 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 250 370 7.1E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 369 496 1.3E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Gene3D G3DSA:1.10.287.130 501 564 7.9E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SUPERFAMILY SSF47384 495 580 2.16E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Gene3D G3DSA:3.30.450.20 383 491 1.7E-30 T 06-07-2017 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00388 510 579 2.6E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SUPERFAMILY SSF55781 28 207 4.14E-57 T 06-07-2017 IPR029016 GAF domain-like APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00091 250 314 2.7E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00091 371 443 0.023 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SUPERFAMILY SSF55785 393 491 1.13E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00086 321 363 8.4E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SMART SM00086 449 491 1.2E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 625 733 1.3E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Pfam PF00989 PAS fold 252 360 2.4E-11 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 712 2.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 675 2.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 689 2.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 731 2.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Gene3D G3DSA:3.30.450.40 33 199 9.2E-32 T 06-07-2017 IPR029016 GAF domain-like APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Gene3D G3DSA:3.30.450.20 235 361 1.5E-24 T 06-07-2017 APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 Gene3D G3DSA:3.30.565.10 565 733 1.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02090 042514a74aaa45b26d7e43c17963ef99 734 SUPERFAMILY SSF55874 568 732 5.24E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16255 f1c23889c23c6f6a71906a3fb6015d75 286 Pfam PF00535 Glycosyl transferase family 2 3 132 4.0E-15 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS16255 f1c23889c23c6f6a71906a3fb6015d75 286 Gene3D G3DSA:3.90.550.10 2 164 6.6E-16 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS16255 f1c23889c23c6f6a71906a3fb6015d75 286 SUPERFAMILY SSF53448 1 138 7.74E-23 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Gene3D G3DSA:3.40.140.20 362 501 2.7E-55 T 06-07-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Gene3D G3DSA:3.40.140.20 238 356 3.8E-46 T 06-07-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 SMART SM00798 135 446 6.6E-184 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 SUPERFAMILY SSF53927 207 511 1.81E-122 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 PIRSF PIRSF000414 1 511 2.6E-205 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Pfam PF01808 AICARFT/IMPCHase bienzyme 136 445 6.7E-115 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 SMART SM00851 14 130 1.6E-60 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 SUPERFAMILY SSF52335 3 195 7.2E-67 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 2 511 43.228 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3 511 5.3E-225 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Gene3D G3DSA:3.40.50.1380 3 187 4.0E-80 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS18955 247c14e526bc83a165f4ca0f339ebad3 511 Pfam PF02142 MGS-like domain 14 129 1.0E-27 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 PIRSF PIRSF019169 2 362 5.5E-97 T 06-07-2017 IPR005883 Type IV pilus assembly protein PilM APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 Gene3D G3DSA:3.30.420.40 200 327 5.3E-6 T 06-07-2017 APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 11 361 1.2E-105 T 06-07-2017 IPR005883 Type IV pilus assembly protein PilM APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 SUPERFAMILY SSF53067 198 358 4.07E-6 T 06-07-2017 APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 SUPERFAMILY SSF53067 28 181 3.3E-10 T 06-07-2017 APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 SMART SM00842 15 186 3.3E-4 T 06-07-2017 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 APT55_RS09785 2bfc69ec313f8737461d2f652d5b9f79 363 Pfam PF11104 Type IV pilus assembly protein PilM; 17 341 7.9E-45 T 06-07-2017 IPR005883 Type IV pilus assembly protein PilM APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 42 155 2.9E-13 T 06-07-2017 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 SUPERFAMILY SSF49303 203 305 3.17E-6 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Gene3D G3DSA:2.60.120.260 29 187 6.5E-56 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 SUPERFAMILY SSF51445 304 602 1.9E-61 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Pfam PF00703 Glycosyl hydrolases family 2 199 305 5.5E-5 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Gene3D G3DSA:3.20.20.80 309 604 6.7E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 340 599 4.4E-11 T 06-07-2017 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 Gene3D G3DSA:2.60.40.320 188 306 4.2E-11 T 06-07-2017 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 APT55_RS28010 bfc160e96c944d5d29ebbf400bfa106c 630 SUPERFAMILY SSF49785 28 197 2.92E-50 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS28330 298a4daecaa5d47adcf44aa1cc85966b 344 SUPERFAMILY SSF103481 63 163 1.18E-13 T 06-07-2017 APT55_RS28330 298a4daecaa5d47adcf44aa1cc85966b 344 Pfam PF00892 EamA-like transporter family 179 313 1.7E-19 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS28330 298a4daecaa5d47adcf44aa1cc85966b 344 Pfam PF00892 EamA-like transporter family 16 162 4.4E-23 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS28330 298a4daecaa5d47adcf44aa1cc85966b 344 SUPERFAMILY SSF103481 220 318 1.83E-14 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00112 1373 1451 0.0092 T 06-07-2017 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.60 1359 1451 9.0E-11 T 06-07-2017 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 5215 5302 1.88E-7 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 1450 1537 1.13E-11 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 5032 5119 1.15E-13 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.1560 1072 1138 6.2E-4 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.1560 1268 1338 5.8E-4 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 5126 5211 1.83E-11 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 6761 6840 6.6E-14 T 06-07-2017 IPR022385 Rhs repeat-associated core GO:0097264 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.120.380 3691 3784 2.5E-6 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.120.380 2364 2454 3.6E-7 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.120.380 2663 2753 1.7E-4 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.120.380 3379 3483 1.5E-4 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 4941 5031 1.65E-12 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00736 4942 5034 0.08 T 06-07-2017 IPR006644 Dystroglycan-type cadherin-like GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00736 5217 5308 0.11 T 06-07-2017 IPR006644 Dystroglycan-type cadherin-like GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00736 1452 1546 0.033 T 06-07-2017 IPR006644 Dystroglycan-type cadherin-like GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00736 5127 5216 0.049 T 06-07-2017 IPR006644 Dystroglycan-type cadherin-like GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SMART SM00736 1814 1903 0.037 T 06-07-2017 IPR006644 Dystroglycan-type cadherin-like GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 4942 5030 2.5E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 5127 5212 1.1E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 5032 5120 2.6E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 5215 5303 4.1E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 1452 1534 6.4E-9 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 1813 1897 1.8E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Gene3D G3DSA:2.60.40.10 4737 4845 2.0E-4 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 4177 4257 5.97E-8 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF117074 4563 4613 2.88E-6 T 06-07-2017 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 1903 1964 3.14E-7 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 6308 6346 1.5E-8 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 5947 5987 0.0027 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 5708 5746 2.8E-7 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 6124 6159 2.0E-5 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 5926 5966 2.5E-4 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 6266 6306 1.4E-6 T 06-07-2017 IPR006530 YD repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 1358 1446 5.14E-10 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 4647 4733 2.67E-7 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 1811 1898 6.91E-13 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 4737 4843 7.57E-8 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05593 RHS Repeat 5708 5740 2.8E-5 T 06-07-2017 IPR031325 RHS repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05593 RHS Repeat 6174 6208 8.6E-5 T 06-07-2017 IPR031325 RHS repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05593 RHS Repeat 6266 6298 1.8E-6 T 06-07-2017 IPR031325 RHS repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05593 RHS Repeat 5968 6003 1.3E-4 T 06-07-2017 IPR031325 RHS repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05593 RHS Repeat 6308 6339 1.3E-7 T 06-07-2017 IPR031325 RHS repeat APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 SUPERFAMILY SSF49313 4851 4935 3.61E-6 T 06-07-2017 IPR015919 Cadherin-like GO:0005509|GO:0016020 APT55_RS29880 fbb33df06abf5f863cd4019956eb7675 7046 Pfam PF05345 Putative Ig domain 1485 1526 5.2E-7 T 06-07-2017 IPR008009 Putative Ig APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Gene3D G3DSA:1.10.240.10 237 310 4.1E-23 T 06-07-2017 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 SUPERFAMILY SSF52374 31 312 8.45E-82 T 06-07-2017 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Pfam PF00579 tRNA synthetases class I (W and Y) 36 312 1.4E-71 T 06-07-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Pfam PF01479 S4 domain 340 374 4.6E-7 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 1 402 42.731 T 06-07-2017 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Gene3D G3DSA:3.40.50.620 22 236 5.0E-77 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 9 400 7.7E-120 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 52 74 2.1E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 2.1E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 2.1E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 170 185 2.1E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 SUPERFAMILY SSF55174 298 400 6.93E-16 T 06-07-2017 APT55_RS04070 af27eb64cd84ff004b0b2dd275961216 402 Gene3D G3DSA:3.10.290.10 311 401 1.4E-20 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS03135 1b3f162658ee49559c241da4a1503dc8 774 Pfam PF13515 Fusaric acid resistance protein-like 434 554 1.7E-17 T 06-07-2017 APT55_RS03135 1b3f162658ee49559c241da4a1503dc8 774 Pfam PF12805 FUSC-like inner membrane protein yccS 79 362 1.3E-17 T 06-07-2017 IPR032692 Integral membrane protein YccS, N-terminal APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 PIRSF PIRSF006205 1 389 2.0E-165 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 SUPERFAMILY SSF51735 2 150 2.63E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 386 2.0E-175 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 384 47.023 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 131 8.7E-46 T 06-07-2017 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Gene3D G3DSA:1.10.1740.10 304 382 1.6E-32 T 06-07-2017 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 SUPERFAMILY SSF69055 291 382 8.37E-33 T 06-07-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 SUPERFAMILY SSF55347 127 263 1.8E-56 T 06-07-2017 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Gene3D G3DSA:3.40.50.720 2 150 2.0E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Pfam PF13288 DXP reductoisomerase C-terminal domain 261 379 3.1E-42 T 06-07-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS08885 e4d606b55addcf7ac9dcc7e81f057118 390 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 229 6.3E-40 T 06-07-2017 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PIRSF PIRSF000904 1 324 2.1E-100 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 324 37.242 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PIRSF PIRSF500210 1 324 1.3E-102 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 193 1.5E-57 T 06-07-2017 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 SUPERFAMILY SSF56655 2 321 1.09E-94 T 06-07-2017 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 66 92 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 29 56 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 298 323 1.1E-50 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 264 276 - T 06-07-2017 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 Gene3D G3DSA:3.30.540.10 5 193 5.4E-62 T 06-07-2017 APT55_RS28210 ac1c82a55df2467904aa2dd315686a91 324 Gene3D G3DSA:3.40.190.80 197 322 1.7E-46 T 06-07-2017 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 Gene3D G3DSA:3.40.640.10 67 313 1.2E-107 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 Gene3D G3DSA:3.90.1150.10 314 447 2.2E-55 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 252 268 - T 06-07-2017 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 37 446 52.989 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 PIRSF PIRSF000412 20 451 1.6E-167 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 SUPERFAMILY SSF53383 29 447 1.67E-183 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS16200 cfc992b8d535396dc4eb46064bd48b66 456 Pfam PF00464 Serine hydroxymethyltransferase 38 415 2.2E-175 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT55_RS26800 4cd1651319b28ee4090ec6f21dac3f24 315 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 161 294 2.1E-25 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS26800 4cd1651319b28ee4090ec6f21dac3f24 315 Gene3D G3DSA:3.40.50.1110 123 301 1.2E-39 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS26800 4cd1651319b28ee4090ec6f21dac3f24 315 SUPERFAMILY SSF52266 113 300 4.89E-41 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 SUPERFAMILY SSF51569 6 294 6.04E-83 T 06-07-2017 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 Pfam PF08502 LeuA allosteric (dimerisation) domain 378 525 7.4E-27 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 SUPERFAMILY SSF110921 422 523 1.18E-21 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 SMART SM00917 377 527 6.3E-37 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 Gene3D G3DSA:3.20.20.70 6 350 1.9E-132 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 Pfam PF00682 HMGL-like 7 257 1.4E-45 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT55_RS17615 1612b72007be38539f3c3c2523fd8e87 543 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 5 531 2.8E-260 T 06-07-2017 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 Pfam PF02527 rRNA small subunit methyltransferase G 27 205 2.1E-52 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 Gene3D G3DSA:3.40.50.150 16 241 6.4E-66 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 18 218 25.234 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 29 213 9.8E-50 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 SUPERFAMILY SSF53335 11 240 2.67E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS01750 e19f9e77d52f8d2f84c1733575ce59b1 241 PIRSF PIRSF003078 5 224 7.3E-43 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT55_RS22890 e04ababb8a7e4cd0ed84a33d12349963 353 Pfam PF00793 DAHP synthetase I family 93 329 1.4E-79 T 06-07-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS22890 e04ababb8a7e4cd0ed84a33d12349963 353 SUPERFAMILY SSF51569 1 343 3.94E-106 T 06-07-2017 APT55_RS22890 e04ababb8a7e4cd0ed84a33d12349963 353 Gene3D G3DSA:3.20.20.70 94 342 1.1E-96 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS22890 e04ababb8a7e4cd0ed84a33d12349963 353 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 92 335 2.0E-117 T 06-07-2017 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT55_RS22890 e04ababb8a7e4cd0ed84a33d12349963 353 Gene3D G3DSA:3.30.70.1140 1 71 6.6E-21 T 06-07-2017 APT55_RS02015 8fccc8e00786b4aa05f046ecbf7cabf2 408 SUPERFAMILY SSF53448 30 283 3.98E-40 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS02015 8fccc8e00786b4aa05f046ecbf7cabf2 408 Pfam PF04138 GtrA-like protein 279 398 1.3E-23 T 06-07-2017 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 APT55_RS02015 8fccc8e00786b4aa05f046ecbf7cabf2 408 Pfam PF00535 Glycosyl transferase family 2 34 202 8.8E-30 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS02015 8fccc8e00786b4aa05f046ecbf7cabf2 408 Gene3D G3DSA:3.90.550.10 33 157 2.5E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11370 ff6cc0ed9221ed83cf5b7dcd76ce068e 301 Pfam PF00950 ABC 3 transport family 9 266 5.7E-85 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APT55_RS11370 ff6cc0ed9221ed83cf5b7dcd76ce068e 301 SUPERFAMILY SSF81345 4 262 1.96E-46 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS11370 ff6cc0ed9221ed83cf5b7dcd76ce068e 301 Gene3D G3DSA:1.10.3470.10 46 268 7.1E-11 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 SUPERFAMILY SSF46946 135 225 2.36E-28 T 06-07-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 SUPERFAMILY SSF81624 2 145 4.19E-34 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 136 224 3.8E-26 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 117 1.8E-30 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 275 3.5E-91 T 06-07-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Gene3D G3DSA:1.10.8.50 136 276 2.8E-48 T 06-07-2017 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 276 38.032 T 06-07-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Pfam PF06827 Zinc finger found in FPG and IleRS 248 276 1.5E-10 T 06-07-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 SMART SM01232 136 228 7.5E-45 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 Gene3D G3DSA:3.20.190.10 2 125 2.3E-31 T 06-07-2017 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 SUPERFAMILY SSF57716 225 276 1.08E-16 T 06-07-2017 APT55_RS06965 ca6ec645c26db8370f855fdb56483f5d 285 SMART SM00898 2 118 1.7E-42 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SUPERFAMILY SSF47644 658 741 1.44E-23 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SUPERFAMILY SSF52242 743 889 5.36E-40 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Pfam PF00809 Pterin binding enzyme 366 597 5.6E-45 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 PIRSF PIRSF000381 1 1210 0.0 T 06-07-2017 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SMART SM01018 660 742 7.9E-41 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SUPERFAMILY SSF51717 362 624 7.46E-78 T 06-07-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SUPERFAMILY SSF56507 920 1210 6.67E-97 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Pfam PF02574 Homocysteine S-methyltransferase 17 308 3.1E-71 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 970 1209 1.7E-36 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Pfam PF02607 B12 binding domain 662 735 7.1E-22 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Gene3D G3DSA:3.20.20.20 370 623 1.4E-87 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Pfam PF02310 B12 binding domain 749 865 3.2E-21 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Gene3D G3DSA:3.10.196.10 974 1209 3.6E-69 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Gene3D G3DSA:1.10.1240.10 655 739 2.2E-30 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 SUPERFAMILY SSF82282 13 405 2.88E-105 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Gene3D G3DSA:3.20.20.330 4 369 8.3E-109 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 Gene3D G3DSA:3.40.50.280 746 880 4.3E-45 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS01215 e7e799d662e985f4be422fb3af2ccbd0 1210 TIGRFAM TIGR02082 metH: methionine synthase 13 1209 0.0 T 06-07-2017 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS04540 4f52a578a553ae971d66b0e92d60dba9 219 SUPERFAMILY SSF51419 3 216 2.22E-69 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS04540 4f52a578a553ae971d66b0e92d60dba9 219 PIRSF PIRSF004848 1 219 7.8E-67 T 06-07-2017 IPR011078 Uncharacterised protein family UPF0001 APT55_RS04540 4f52a578a553ae971d66b0e92d60dba9 219 Pfam PF01168 Alanine racemase, N-terminal domain 6 218 1.4E-29 T 06-07-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS04540 4f52a578a553ae971d66b0e92d60dba9 219 Gene3D G3DSA:3.20.20.10 4 218 2.5E-74 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS04540 4f52a578a553ae971d66b0e92d60dba9 219 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 12 218 1.4E-66 T 06-07-2017 IPR011078 Uncharacterised protein family UPF0001 APT55_RS03310 c630281c3b39a4dee238359b4ddf510e 158 Pfam PF07386 Protein of unknown function (DUF1499) 44 153 1.1E-32 T 06-07-2017 IPR010865 Protein of unknown function DUF1499 APT55_RS03310 c630281c3b39a4dee238359b4ddf510e 158 PIRSF PIRSF026426 6 158 7.5E-51 T 06-07-2017 IPR010865 Protein of unknown function DUF1499 APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 SMART SM00091 74 140 5.3E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 SUPERFAMILY SSF51206 207 303 6.46E-6 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 75 168 1.4E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 Gene3D G3DSA:3.30.450.20 72 172 2.3E-12 T 06-07-2017 APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 SUPERFAMILY SSF55785 75 172 1.08E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 Pfam PF00989 PAS fold 75 136 7.4E-6 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 SMART SM00419 335 384 3.6E-9 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 SUPERFAMILY SSF46785 314 382 7.86E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 Pfam PF13545 Crp-like helix-turn-helix domain 317 382 7.6E-11 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS24250 382d70d6056eb32a716471cbdbe43449 386 Gene3D G3DSA:1.10.10.10 314 383 2.4E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26365 dc2b1ac13cd28385e727f0725ead714d 111 Pfam PF01909 Nucleotidyltransferase domain 25 107 8.0E-14 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS26365 dc2b1ac13cd28385e727f0725ead714d 111 Gene3D G3DSA:3.30.460.10 15 106 2.4E-23 T 06-07-2017 APT55_RS26365 dc2b1ac13cd28385e727f0725ead714d 111 SUPERFAMILY SSF81301 12 110 2.77E-20 T 06-07-2017 APT55_RS01830 0b6360eb416839635f1c19e6344f104e 139 Gene3D G3DSA:1.10.10.10 11 88 8.4E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01830 0b6360eb416839635f1c19e6344f104e 139 SUPERFAMILY SSF46785 11 131 4.71E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01830 0b6360eb416839635f1c19e6344f104e 139 Pfam PF03965 Penicillinase repressor 14 130 2.5E-31 T 06-07-2017 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 APT55_RS01830 0b6360eb416839635f1c19e6344f104e 139 PIRSF PIRSF019455 6 139 2.6E-31 T 06-07-2017 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 PIRSF PIRSF010376 2 309 3.5E-88 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 Gene3D G3DSA:3.30.70.890 167 305 3.8E-29 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 Pfam PF00288 GHMP kinases N terminal domain 92 149 2.5E-7 T 06-07-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 306 34.222 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 Pfam PF08544 GHMP kinases C terminal 215 290 1.8E-11 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 SUPERFAMILY SSF55060 167 293 3.36E-22 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 SUPERFAMILY SSF54211 4 162 6.07E-43 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 302 2.7E-91 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT55_RS24125 8fc49f31aaa98cbf2d1ce1f126bbba5b 313 Gene3D G3DSA:3.30.230.10 6 163 9.2E-51 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 414 430 - T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SMART SM00533 10 310 1.5E-16 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 3 789 19.074 T 06-07-2017 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 Pfam PF01713 Smr domain 720 786 5.7E-13 T 06-07-2017 IPR002625 Smr domain APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 Pfam PF00488 MutS domain V 335 515 1.8E-32 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SUPERFAMILY SSF160443 717 787 1.31E-6 T 06-07-2017 IPR002625 Smr domain APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 TIGRFAM TIGR01069 mutS2: MutS2 family protein 2 788 3.6E-258 T 06-07-2017 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SUPERFAMILY SSF48334 66 283 8.37E-19 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SUPERFAMILY SSF52540 289 517 1.45E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SMART SM00534 330 517 3.7E-74 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 PIRSF PIRSF005814 1 789 3.1E-263 T 06-07-2017 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 Gene3D G3DSA:3.40.50.300 290 517 2.8E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25645 515454ceed4cfba6d6f76935a5b2d5da 790 SMART SM00463 716 790 1.4E-11 T 06-07-2017 IPR002625 Smr domain APT55_RS21545 e8be63776a5b63fe132c4046f1ea63db 274 SUPERFAMILY SSF48452 180 256 1.21E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21545 e8be63776a5b63fe132c4046f1ea63db 274 Pfam PF13369 Transglutaminase-like superfamily 42 194 3.9E-54 T 06-07-2017 IPR032698 Protein SirB1, N-terminal APT55_RS21545 e8be63776a5b63fe132c4046f1ea63db 274 Gene3D G3DSA:1.25.40.10 16 35 1.4E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21545 e8be63776a5b63fe132c4046f1ea63db 274 Gene3D G3DSA:1.25.40.10 193 254 1.4E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21545 e8be63776a5b63fe132c4046f1ea63db 274 Pfam PF13371 Tetratricopeptide repeat 197 268 1.1E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 SUPERFAMILY SSF56112 4 291 1.04E-55 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 Gene3D G3DSA:3.30.200.20 7 135 5.1E-25 T 06-07-2017 APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 Pfam PF00069 Protein kinase domain 15 269 2.3E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 21 45 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 146 158 - T 06-07-2017 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS14905 6f09635ae3308641f417cc57f4214f79 509 Gene3D G3DSA:1.10.510.10 136 273 2.3E-28 T 06-07-2017 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 447 573 2.2E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Gene3D G3DSA:3.30.450.40 85 251 4.0E-37 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SUPERFAMILY SSF55785 443 567 1.5E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Gene3D G3DSA:3.30.70.1230 601 785 4.6E-46 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Gene3D G3DSA:3.30.450.40 263 452 5.3E-51 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SUPERFAMILY SSF55781 258 459 1.7E-38 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SUPERFAMILY SSF55073 598 786 9.89E-58 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 603 780 1.0E-33 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Pfam PF01590 GAF domain 91 241 3.2E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Pfam PF01590 GAF domain 277 437 4.4E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SUPERFAMILY SSF55781 91 254 5.45E-29 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Gene3D G3DSA:3.30.450.20 453 568 1.5E-12 T 06-07-2017 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SMART SM00091 451 517 2.0E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 Pfam PF13426 PAS domain 462 569 4.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SMART SM00044 569 776 5.3E-20 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SMART SM00065 86 255 1.5E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS20680 5fb26cb742d7635015ec37b8d9acca77 863 SMART SM00065 277 447 4.0E-29 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS02575 373eaa99c109706bb110943810f68183 139 SMART SM00554 38 134 2.1E-28 T 06-07-2017 IPR000782 FAS1 domain APT55_RS02575 373eaa99c109706bb110943810f68183 139 Pfam PF02469 Fasciclin domain 13 133 8.4E-29 T 06-07-2017 IPR000782 FAS1 domain APT55_RS02575 373eaa99c109706bb110943810f68183 139 SUPERFAMILY SSF82153 2 133 1.03E-34 T 06-07-2017 IPR000782 FAS1 domain APT55_RS02575 373eaa99c109706bb110943810f68183 139 Gene3D G3DSA:2.30.180.10 3 132 3.2E-35 T 06-07-2017 IPR000782 FAS1 domain APT55_RS19465 5c6e9d927c4049ae96b32c33e6927c1c 84 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 13 55 5.2E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS19465 5c6e9d927c4049ae96b32c33e6927c1c 84 Gene3D G3DSA:1.10.260.40 13 67 3.0E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS11325 e73be31e73c20900df6c6a426cc7f89c 287 SUPERFAMILY SSF56112 17 282 1.12E-44 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS11325 e73be31e73c20900df6c6a426cc7f89c 287 PIRSF PIRSF006221 1 287 5.1E-109 T 06-07-2017 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 APT55_RS11325 e73be31e73c20900df6c6a426cc7f89c 287 Pfam PF03881 Fructosamine kinase 1 286 3.7E-120 T 06-07-2017 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 APT55_RS11325 e73be31e73c20900df6c6a426cc7f89c 287 Gene3D G3DSA:3.90.1200.10 98 262 3.1E-10 T 06-07-2017 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 ProSitePatterns PS00674 AAA-protein family signature. 312 330 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 SMART SM00382 205 344 5.7E-25 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Pfam PF01434 Peptidase family M41 402 611 1.2E-78 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 SUPERFAMILY SSF52540 168 413 7.71E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Gene3D G3DSA:1.10.8.60 343 417 2.1E-26 T 06-07-2017 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Pfam PF06480 FtsH Extracellular 8 110 1.2E-7 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 623 36.607 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 209 340 1.7E-46 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 Gene3D G3DSA:3.40.50.300 168 340 3.8E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 119 612 4.8E-231 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS23995 bab81a34e5e8e3e25214a1561355bad7 628 SUPERFAMILY SSF140990 424 621 3.27E-71 T 06-07-2017 APT55_RS17150 b629c70b2276edc92db7f8009bca99f8 185 Gene3D G3DSA:1.20.58.320 2 80 5.2E-32 T 06-07-2017 APT55_RS17150 b629c70b2276edc92db7f8009bca99f8 185 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 182 2.9E-67 T 06-07-2017 IPR010323 Protein of unknown function DUF924 APT55_RS17150 b629c70b2276edc92db7f8009bca99f8 185 Gene3D G3DSA:1.25.40.10 81 185 1.5E-38 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17150 b629c70b2276edc92db7f8009bca99f8 185 SUPERFAMILY SSF48452 3 181 7.96E-68 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 Gene3D G3DSA:2.60.120.380 317 424 6.2E-12 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 SUPERFAMILY SSF69318 32 260 4.45E-27 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 Gene3D G3DSA:3.40.390.10 432 556 7.6E-6 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 SUPERFAMILY SSF89260 333 425 1.83E-8 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 SUPERFAMILY SSF55486 520 664 3.44E-14 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 SUPERFAMILY SSF55486 451 556 6.23E-7 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 Gene3D G3DSA:2.130.10.130 13 102 2.2E-6 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 Gene3D G3DSA:2.130.10.130 103 258 1.1E-16 T 06-07-2017 APT55_RS25955 83740901dd014e89ebae3e0bddbda409 716 Gene3D G3DSA:3.90.132.10 605 663 1.0E-4 T 06-07-2017 APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 SUPERFAMILY SSF53335 220 255 2.96E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 SUPERFAMILY SSF53335 3 189 2.96E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 SUPERFAMILY SSF53335 381 440 2.96E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 Gene3D G3DSA:3.40.50.150 2 218 3.0E-51 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 437 1.2E-54 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 Pfam PF00145 C-5 cytosine-specific DNA methylase 4 438 3.2E-60 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 66 78 - T 06-07-2017 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-5334118 APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 6.2E-9 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 161 174 6.2E-9 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS09075 2b6278167413932fe60ad94320e4474c 469 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 106 120 6.2E-9 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS14925 e8448bdfb00d04d650552f886e75b63f 280 Gene3D G3DSA:1.10.101.10 213 277 9.6E-18 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14925 e8448bdfb00d04d650552f886e75b63f 280 SUPERFAMILY SSF47090 211 276 8.16E-17 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14925 e8448bdfb00d04d650552f886e75b63f 280 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 63 125 2.2E-7 T 06-07-2017 IPR003709 Peptidase M15B GO:0006508|GO:0008233 APT55_RS14925 e8448bdfb00d04d650552f886e75b63f 280 SUPERFAMILY SSF55166 63 151 2.62E-12 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS14925 e8448bdfb00d04d650552f886e75b63f 280 Pfam PF01471 Putative peptidoglycan binding domain 220 276 3.6E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS17195 e22a50b70b87291999d79f999fdebdf3 126 Gene3D G3DSA:3.40.50.2300 5 120 4.1E-17 T 06-07-2017 APT55_RS17195 e22a50b70b87291999d79f999fdebdf3 126 SMART SM00448 2 112 7.8E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17195 e22a50b70b87291999d79f999fdebdf3 126 Pfam PF00072 Response regulator receiver domain 6 108 2.8E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17195 e22a50b70b87291999d79f999fdebdf3 126 SUPERFAMILY SSF52172 1 115 9.82E-19 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23720 9721bb4738d826934527b9f43ca18b50 103 Pfam PF11378 Protein of unknown function (DUF3181) 10 99 1.2E-36 T 06-07-2017 IPR021518 Protein of unknown function DUF3181 APT55_RS25770 7d60190eaafa8c08c43d009e02f1dd0e 87 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 3 51 3.0E-8 T 06-07-2017 IPR022789 Antitoxin ParD APT55_RS24810 cae98c7c2f245a4b515b67bd46389382 146 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 141 10.897 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS24810 cae98c7c2f245a4b515b67bd46389382 146 Pfam PF01850 PIN domain 4 135 6.3E-13 T 06-07-2017 IPR002716 PIN domain APT55_RS24810 cae98c7c2f245a4b515b67bd46389382 146 Gene3D G3DSA:3.40.50.1010 3 133 1.5E-8 T 06-07-2017 IPR029060 PIN domain-like APT55_RS24810 cae98c7c2f245a4b515b67bd46389382 146 SUPERFAMILY SSF88723 1 140 2.5E-22 T 06-07-2017 IPR029060 PIN domain-like APT55_RS18100 ef4c39f8c6f2c95aa1e29b1de162f756 199 Pfam PF05685 Putative restriction endonuclease 22 182 1.5E-32 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS18100 ef4c39f8c6f2c95aa1e29b1de162f756 199 SUPERFAMILY SSF52980 14 193 6.43E-23 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS18100 ef4c39f8c6f2c95aa1e29b1de162f756 199 Gene3D G3DSA:3.90.1570.10 13 174 2.0E-23 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 SUPERFAMILY SSF53067 3 236 2.68E-82 T 06-07-2017 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 Gene3D G3DSA:3.30.420.40 1 234 1.2E-85 T 06-07-2017 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 343 363 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 233 1.7E-64 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 Gene3D G3DSA:3.30.420.40 235 476 6.2E-87 T 06-07-2017 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 SUPERFAMILY SSF53067 235 476 5.46E-74 T 06-07-2017 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 PIRSF PIRSF000538 1 477 8.3E-166 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 242 431 3.1E-52 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 127 139 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 Hamap MF_00186 Glycerol kinase [glpK]. 1 477 51.621 T 06-07-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APT55_RS02205 3c22e4d81c0c8f5128b752186b30a814 477 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 476 3.3E-185 T 06-07-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APT55_RS25085 af8515a93815c7a11946c3edd4326666 337 Gene3D G3DSA:3.40.50.1980 167 330 1.3E-19 T 06-07-2017 APT55_RS25085 af8515a93815c7a11946c3edd4326666 337 Gene3D G3DSA:3.40.50.1980 36 165 1.6E-18 T 06-07-2017 APT55_RS25085 af8515a93815c7a11946c3edd4326666 337 Pfam PF01497 Periplasmic binding protein 56 305 1.2E-20 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS25085 af8515a93815c7a11946c3edd4326666 337 SUPERFAMILY SSF53807 34 315 6.67E-40 T 06-07-2017 APT55_RS12775 21c46a82706ce4ee227d3a6f2ce16e12 302 SUPERFAMILY SSF53448 4 223 2.86E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12775 21c46a82706ce4ee227d3a6f2ce16e12 302 Gene3D G3DSA:3.90.550.10 3 189 2.2E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12775 21c46a82706ce4ee227d3a6f2ce16e12 302 Pfam PF00535 Glycosyl transferase family 2 7 112 1.2E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 Gene3D G3DSA:3.30.450.90 57 153 4.0E-4 T 06-07-2017 APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 58 397 7.7E-140 T 06-07-2017 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 Pfam PF00437 Type II/IV secretion system protein 64 324 3.1E-47 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 247 261 - T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 SUPERFAMILY SSF52540 56 390 1.15E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 SMART SM00382 176 351 0.0027 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25570 74e6a93012bd8188c2c0160396455cbe 406 Gene3D G3DSA:3.40.50.300 154 396 1.1E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SMART SM00448 1749 1863 4.7E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SUPERFAMILY SSF52172 1750 1869 3.13E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:3.40.50.2300 1748 1870 1.0E-35 T 06-07-2017 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SUPERFAMILY SSF47384 1233 1289 2.0E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SMART SM01231 1232 1388 9.0E-12 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Pfam PF01584 CheW-like domain 1582 1718 2.7E-20 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1560 1573 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1478 1492 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1536 1554 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1520 1530 2.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SUPERFAMILY SSF47226 7 127 5.1E-26 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1437 1575 1.6E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SMART SM00073 6 104 2.1E-24 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Pfam PF01627 Hpt domain 9 108 2.6E-17 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:2.30.30.40 1576 1597 6.3E-23 T 06-07-2017 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:2.30.30.40 1672 1717 6.3E-23 T 06-07-2017 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SUPERFAMILY SSF55874 1390 1574 1.44E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:1.10.287.560 1232 1289 6.3E-16 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:3.30.565.10 1389 1575 4.7E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SMART SM00260 1568 1717 1.7E-30 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 1233 1289 1.3E-9 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Pfam PF00072 Response regulator receiver domain 1751 1863 1.8E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SMART SM00387 1433 1576 2.4E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 SUPERFAMILY SSF50341 1575 1717 1.14E-24 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02655 e2bff4c70892f6a9b055baf88650785c 1881 Gene3D G3DSA:1.20.120.160 5 129 4.7E-33 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS13455 2f158d4f701e011e966f0556068ddaa4 289 PIRSF PIRSF005898 3 285 5.6E-84 T 06-07-2017 IPR016470 Phycobilisome linker protein GO:0015979|GO:0030089 APT55_RS13455 2f158d4f701e011e966f0556068ddaa4 289 Pfam PF00427 Phycobilisome Linker polypeptide 29 152 7.7E-50 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS13455 2f158d4f701e011e966f0556068ddaa4 289 SMART SM01094 236 288 1.1E-20 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS13455 2f158d4f701e011e966f0556068ddaa4 289 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 21 204 7.0E-76 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS13455 2f158d4f701e011e966f0556068ddaa4 289 Pfam PF01383 CpcD/allophycocyanin linker domain 237 286 2.4E-20 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 SUPERFAMILY SSF51395 26 333 1.65E-89 T 06-07-2017 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 18 332 1.2E-123 T 06-07-2017 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 Gene3D G3DSA:1.10.1200.80 267 334 3.4E-21 T 06-07-2017 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 PIRSF PIRSF006621 15 341 2.8E-109 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 109 127 - T 06-07-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 Gene3D G3DSA:3.20.20.70 23 260 9.9E-81 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS18760 4075e06f4cd1f77aa94f0a74ad59796f 353 Pfam PF01207 Dihydrouridine synthase (Dus) 30 330 2.3E-100 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT55_RS16740 371c6ac2c5ced9405c09a89da21d73f8 138 Pfam PF05099 Tellurite resistance protein TerB 9 105 4.6E-7 T 06-07-2017 IPR007791 Co-chaperone DjlA, N-terminal APT55_RS16740 371c6ac2c5ced9405c09a89da21d73f8 138 SUPERFAMILY SSF158682 7 106 2.75E-13 T 06-07-2017 IPR029024 TerB-like APT55_RS16740 371c6ac2c5ced9405c09a89da21d73f8 138 Gene3D G3DSA:1.10.3680.10 8 105 1.6E-13 T 06-07-2017 IPR029024 TerB-like APT55_RS28820 8796d9e6a4c0b6f4fa7587f20db99fb3 331 SMART SM00756 11 159 2.8E-38 T 06-07-2017 IPR012932 Vitamin K epoxide reductase Reactome: R-HSA-6806664 APT55_RS28820 8796d9e6a4c0b6f4fa7587f20db99fb3 331 Gene3D G3DSA:3.40.30.10 214 323 4.0E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28820 8796d9e6a4c0b6f4fa7587f20db99fb3 331 SUPERFAMILY SSF52833 231 311 1.56E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28820 8796d9e6a4c0b6f4fa7587f20db99fb3 331 Pfam PF07884 Vitamin K epoxide reductase family 17 155 1.0E-27 T 06-07-2017 IPR012932 Vitamin K epoxide reductase Reactome: R-HSA-6806664 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00220 51 316 2.0E-40 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 185 197 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Gene3D G3DSA:1.10.510.10 133 312 3.4E-43 T 06-07-2017 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Pfam PF13432 Tetratricopeptide repeat 330 371 0.0024 T 06-07-2017 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SUPERFAMILY SSF48452 331 644 2.42E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 57 80 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SUPERFAMILY SSF56112 49 322 1.09E-60 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00028 597 630 0.029 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00028 356 389 52.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00028 424 457 52.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00028 390 423 9.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 SMART SM00028 533 566 28.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Gene3D G3DSA:1.25.40.10 332 496 2.9E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Gene3D G3DSA:1.25.40.10 523 676 1.4E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Gene3D G3DSA:3.30.200.20 49 132 5.4E-19 T 06-07-2017 APT55_RS27495 0cfb55fd25d10c536c529e5df3a92940 690 Pfam PF00069 Protein kinase domain 51 268 1.9E-42 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 517 542 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 Gene3D G3DSA:3.30.200.20 509 585 1.5E-15 T 06-07-2017 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 SUPERFAMILY SSF56112 502 779 1.89E-51 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 Pfam PF00069 Protein kinase domain 511 759 1.1E-33 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 SMART SM01080 93 400 2.4E-44 T 06-07-2017 IPR007890 CHASE2 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 Pfam PF05226 CHASE2 domain 86 395 3.7E-33 T 06-07-2017 IPR007890 CHASE2 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 636 648 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 SMART SM00220 511 770 9.8E-30 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24690 3ccc3fdb6cb2fa615535ad3f441d3f03 820 Gene3D G3DSA:1.10.510.10 586 765 2.0E-34 T 06-07-2017 APT55_RS21390 7b918e3432ce7d0328c99fa33079f4df 86 SMART SM00470 4 86 2.6E-12 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS21390 7b918e3432ce7d0328c99fa33079f4df 86 Pfam PF02195 ParB-like nuclease domain 4 79 1.4E-16 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS21390 7b918e3432ce7d0328c99fa33079f4df 86 SUPERFAMILY SSF110849 2 84 8.37E-26 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS21390 7b918e3432ce7d0328c99fa33079f4df 86 Gene3D G3DSA:3.90.1530.10 2 76 3.7E-12 T 06-07-2017 APT55_RS21390 7b918e3432ce7d0328c99fa33079f4df 86 PIRSF PIRSF017267 1 86 1.4E-17 T 06-07-2017 IPR016692 Sulfiredoxin GO:0032542|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 784 795 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 SUPERFAMILY SSF51730 137 462 9.02E-94 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like APT55_RS03970 880aa063db61defc628b8a6698949c78 997 Gene3D G3DSA:3.20.20.220 137 463 8.0E-94 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like APT55_RS03970 880aa063db61defc628b8a6698949c78 997 Pfam PF01619 Proline dehydrogenase 143 449 3.5E-95 T 06-07-2017 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 Pfam PF00171 Aldehyde dehydrogenase family 520 981 2.6E-154 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 Gene3D G3DSA:3.40.605.10 512 771 3.4E-88 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 756 763 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 PIRSF PIRSF000197 104 992 1.1E-241 T 06-07-2017 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 478 984 3.0E-231 T 06-07-2017 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 Gene3D G3DSA:3.40.309.10 772 960 3.0E-62 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS03970 880aa063db61defc628b8a6698949c78 997 SUPERFAMILY SSF53720 496 984 9.56E-155 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 1.3E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 SUPERFAMILY SSF64288 56 230 2.67E-25 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 SMART SM00345 9 68 1.9E-23 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 7.5E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 7.5E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 Pfam PF07702 UTRA domain 91 223 1.1E-13 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 Gene3D G3DSA:3.40.1410.10 65 230 7.6E-22 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 SMART SM00866 90 224 6.7E-12 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 SUPERFAMILY SSF46785 3 72 3.68E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04455 a6683e84cc4342838cd399aaccb66fba 237 Gene3D G3DSA:1.10.10.10 4 64 4.8E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24820 bd76662642285fe2bc4a6885fb3e3fd6 74 Pfam PF09720 Putative addiction module component 12 66 5.9E-16 T 06-07-2017 IPR013406 Conserved hypothetical protein CHP02574, addiction module APT55_RS24820 bd76662642285fe2bc4a6885fb3e3fd6 74 TIGRFAM TIGR02574 stabl_TIGR02574: putative addiction module component, TIGR02574 family 10 72 2.7E-22 T 06-07-2017 IPR013406 Conserved hypothetical protein CHP02574, addiction module APT55_RS24820 bd76662642285fe2bc4a6885fb3e3fd6 74 ProSitePatterns PS00018 EF-hand calcium-binding domain. 54 66 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site APT55_RS03710 8d1e22ec54a6ec5128d6f14b2300ca84 160 SUPERFAMILY SSF53163 10 156 2.62E-29 T 06-07-2017 IPR023430 Peptidase HybD-like domain APT55_RS03710 8d1e22ec54a6ec5128d6f14b2300ca84 160 Gene3D G3DSA:3.40.50.1450 11 156 2.1E-31 T 06-07-2017 IPR023430 Peptidase HybD-like domain APT55_RS03710 8d1e22ec54a6ec5128d6f14b2300ca84 160 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 13 155 1.1E-32 T 06-07-2017 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APT55_RS03710 8d1e22ec54a6ec5128d6f14b2300ca84 160 Pfam PF01750 Hydrogenase maturation protease 35 154 9.1E-14 T 06-07-2017 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APT55_RS02975 52b3b4c1f4a8dbf835ff28616af97dab 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 280 3.6E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02975 52b3b4c1f4a8dbf835ff28616af97dab 295 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 23 284 1.5E-121 T 06-07-2017 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 APT55_RS02975 52b3b4c1f4a8dbf835ff28616af97dab 295 Gene3D G3DSA:1.10.3720.10 29 284 7.9E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02975 52b3b4c1f4a8dbf835ff28616af97dab 295 SUPERFAMILY SSF161098 27 278 2.71E-51 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02975 52b3b4c1f4a8dbf835ff28616af97dab 295 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 22 280 2.5E-105 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT55_RS14955 0b5de89fe4bea1ef4186556f82eac473 172 SMART SM00065 9 167 0.004 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14955 0b5de89fe4bea1ef4186556f82eac473 172 Gene3D G3DSA:3.30.450.40 14 154 2.7E-8 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14955 0b5de89fe4bea1ef4186556f82eac473 172 SUPERFAMILY SSF55781 14 154 1.35E-13 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14955 0b5de89fe4bea1ef4186556f82eac473 172 Pfam PF01590 GAF domain 14 154 5.9E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SUPERFAMILY SSF52540 480 797 1.06E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 565 583 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 316 1.1E-13 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 642 656 2.5E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 627 2.5E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 580 598 2.5E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 535 553 2.5E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SMART SM01086 711 801 1.4E-31 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:3.40.50.300 163 342 4.2E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SUPERFAMILY SSF52540 160 430 1.22E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:1.10.8.60 344 422 3.4E-28 T 06-07-2017 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:3.40.50.300 484 657 4.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:3.40.50.300 694 722 4.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 142 3.6E-12 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 1.4E-11 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 711 791 2.1E-24 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SMART SM00382 531 712 1.2E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SMART SM00382 199 344 8.7E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Pfam PF07724 AAA domain (Cdc48 subfamily) 530 705 1.6E-53 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 SUPERFAMILY SSF81923 3 133 9.42E-25 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:1.10.1780.10 2 144 1.6E-40 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS11490 309c70971b5e7676a860131a76f287ba 802 Gene3D G3DSA:1.10.8.60 723 797 1.3E-28 T 06-07-2017 APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 SUPERFAMILY SSF48498 85 207 2.36E-13 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 3.1E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 SUPERFAMILY SSF46689 7 90 9.23E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 Gene3D G3DSA:1.10.357.10 4 208 4.4E-41 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 4.8E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS25780 d5000a09c694a0ec27764f15ca58bb31 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 4.8E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS07050 b6ba554f187f0d361b4ca7ce1ea86375 209 Gene3D G3DSA:3.40.50.150 7 196 1.9E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07050 b6ba554f187f0d361b4ca7ce1ea86375 209 Pfam PF08241 Methyltransferase domain 45 141 1.2E-26 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS07050 b6ba554f187f0d361b4ca7ce1ea86375 209 SUPERFAMILY SSF53335 6 197 2.17E-46 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS02120 8d6af65af83711d1637a51fa8e106152 387 SUPERFAMILY SSF51412 6 375 6.56E-74 T 06-07-2017 APT55_RS02120 8d6af65af83711d1637a51fa8e106152 387 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 15 297 1.6E-47 T 06-07-2017 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 APT55_RS02120 8d6af65af83711d1637a51fa8e106152 387 SMART SM01240 13 377 2.2E-77 T 06-07-2017 APT55_RS02120 8d6af65af83711d1637a51fa8e106152 387 Gene3D G3DSA:3.20.20.70 10 369 2.2E-76 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS02120 8d6af65af83711d1637a51fa8e106152 387 TIGRFAM TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein 3 366 1.9E-167 T 06-07-2017 IPR005992 IMP dehydrogenase-related 2 GO:0016491|GO:0055114 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SUPERFAMILY SSF55781 413 582 4.8E-51 T 06-07-2017 IPR029016 GAF domain-like APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SMART SM00283 667 928 5.0E-70 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SUPERFAMILY SSF58104 621 929 4.45E-62 T 06-07-2017 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SMART SM00304 602 652 0.17 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SMART SM00304 356 408 9.1E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Pfam PF02743 Cache domain 79 316 1.0E-19 T 06-07-2017 IPR033479 Double Cache domain 1 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Pfam PF00672 HAMP domain 337 404 6.3E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Gene3D G3DSA:1.10.287.950 682 896 9.8E-47 T 06-07-2017 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 713 927 3.4E-40 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Gene3D G3DSA:3.30.450.40 418 576 4.2E-35 T 06-07-2017 IPR029016 GAF domain-like APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SUPERFAMILY SSF103190 100 234 1.07E-5 T 06-07-2017 IPR029151 Periplasmic sensor domain-like APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Gene3D G3DSA:3.30.450.20 133 210 1.2E-7 T 06-07-2017 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SUPERFAMILY SSF158472 358 407 9.94E-8 T 06-07-2017 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 SMART SM00065 432 583 1.5E-24 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Gene3D G3DSA:3.30.450.20 211 333 1.0E-5 T 06-07-2017 APT55_RS03960 40a99f6e3c39d5970d4b42751fdbf36d 930 Pfam PF01590 GAF domain 433 573 4.1E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 PIRSF PIRSF000077 1 107 4.2E-46 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 Gene3D G3DSA:3.40.30.10 4 107 1.4E-40 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 SUPERFAMILY SSF52833 6 107 9.59E-43 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 Pfam PF00085 Thioredoxin 5 106 8.5E-36 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 106 1.1E-41 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 PRINTS PR00421 Thioredoxin family signature 31 40 2.1E-10 T 06-07-2017 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 PRINTS PR00421 Thioredoxin family signature 71 82 2.1E-10 T 06-07-2017 APT55_RS28965 3f81b2b493d33d4012e67378d18acc13 107 PRINTS PR00421 Thioredoxin family signature 23 31 2.1E-10 T 06-07-2017 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 Gene3D G3DSA:3.40.50.2300 1 133 3.7E-40 T 06-07-2017 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 Pfam PF00072 Response regulator receiver domain 4 116 1.3E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 Gene3D G3DSA:1.10.10.10 151 211 9.7E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.9E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.9E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.9E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 SUPERFAMILY SSF52172 1 131 5.12E-42 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 SMART SM00421 149 206 8.2E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 SMART SM00448 2 115 2.8E-44 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 1.1E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23505 c815d4fddbd94febbcc1761589601e4a 225 SUPERFAMILY SSF46894 143 212 6.12E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS07490 4108b3edc230610dbaf92b5f1d05cab5 39 Pfam PF06596 Photosystem II reaction centre X protein (PsbX) 1 38 1.6E-22 T 06-07-2017 IPR009518 Photosystem II PsbX GO:0009523|GO:0015979|GO:0016020 APT55_RS07490 4108b3edc230610dbaf92b5f1d05cab5 39 Gene3D G3DSA:1.20.5.510 1 39 1.3E-18 T 06-07-2017 APT55_RS07490 4108b3edc230610dbaf92b5f1d05cab5 39 Hamap MF_01386 Photosystem II reaction center X protein [psbX]. 1 39 11.835 T 06-07-2017 IPR023431 Photosystem II PsbX, type 1 subfamily APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 Gene3D G3DSA:1.10.10.10 310 371 2.1E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 311 325 2.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 325 341 2.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 341 353 2.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 Pfam PF13185 GAF domain 34 168 3.3E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 SUPERFAMILY SSF46894 303 371 1.43E-17 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 SUPERFAMILY SSF55781 17 181 1.9E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 Gene3D G3DSA:3.30.450.40 18 168 1.2E-22 T 06-07-2017 IPR029016 GAF domain-like APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 SMART SM00065 32 178 5.8E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 Pfam PF00196 Bacterial regulatory proteins, luxR family 310 362 6.0E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS24650 6a89badf2cf2bb016ef037b191bf0514 371 SMART SM00421 308 365 4.2E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS13435 0d618232add4380af43d61666980cac0 162 PIRSF PIRSF000081 1 162 9.5E-46 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13435 0d618232add4380af43d61666980cac0 162 SUPERFAMILY SSF46458 1 162 8.77E-56 T 06-07-2017 IPR009050 Globin-like APT55_RS13435 0d618232add4380af43d61666980cac0 162 TIGRFAM TIGR01338 phycocy_alpha: phycocyanin, alpha subunit 2 162 9.7E-95 T 06-07-2017 IPR006246 Phycocyanin, alpha subunit GO:0015979|GO:0030089 APT55_RS13435 0d618232add4380af43d61666980cac0 162 Pfam PF00502 Phycobilisome protein 8 161 4.3E-48 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13435 0d618232add4380af43d61666980cac0 162 Gene3D G3DSA:1.10.490.20 1 162 2.4E-56 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS05600 2f8d4a95830a118c1fbb5903866a17c6 284 Gene3D G3DSA:3.40.1190.20 3 277 8.9E-58 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS05600 2f8d4a95830a118c1fbb5903866a17c6 284 Pfam PF00294 pfkB family carbohydrate kinase 7 270 5.8E-22 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB APT55_RS05600 2f8d4a95830a118c1fbb5903866a17c6 284 SUPERFAMILY SSF53613 6 274 9.98E-40 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 SUPERFAMILY SSF56047 4 133 3.01E-47 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 Gene3D G3DSA:3.30.1490.10 77 133 1.4E-31 T 06-07-2017 APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 133 32.827 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 ProSitePatterns PS00053 Ribosomal protein S8 signature. 103 120 - T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 Pfam PF00410 Ribosomal protein S8 5 133 4.8E-49 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24770 cb4178b093f46376258777674b2f8af7 133 Gene3D G3DSA:3.30.1370.30 4 71 8.4E-25 T 06-07-2017 APT55_RS10615 91441c3c2577ac9e014d977d7d8f6a3f 310 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 93 243 4.9E-28 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS10615 91441c3c2577ac9e014d977d7d8f6a3f 310 Pfam PF05050 Methyltransferase FkbM domain 96 268 9.2E-21 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS10615 91441c3c2577ac9e014d977d7d8f6a3f 310 SUPERFAMILY SSF53335 49 270 5.18E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10615 91441c3c2577ac9e014d977d7d8f6a3f 310 Gene3D G3DSA:3.40.50.150 76 272 2.7E-38 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 459 503 8.4E-18 T 06-07-2017 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 507 52.006 T 06-07-2017 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 506 1.7E-234 T 06-07-2017 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 PIRSF PIRSF000163 1 508 3.8E-211 T 06-07-2017 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Gene3D G3DSA:3.40.50.1980 298 429 6.4E-17 T 06-07-2017 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 426 1.2E-74 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Gene3D G3DSA:3.40.50.1980 12 151 3.3E-25 T 06-07-2017 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 SUPERFAMILY SSF53807 3 446 5.56E-113 T 06-07-2017 APT55_RS26945 2bb7fec36ed3565942b550e1fd06fe68 508 Gene3D G3DSA:3.40.50.1980 154 264 2.7E-27 T 06-07-2017 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 SMART SM00448 6 119 6.2E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 SMART SM00421 143 200 4.7E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 Pfam PF00072 Response regulator receiver domain 8 119 3.6E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 SUPERFAMILY SSF46894 139 206 1.7E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 Gene3D G3DSA:1.10.10.10 149 205 5.7E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 Gene3D G3DSA:3.40.50.2300 3 148 2.9E-38 T 06-07-2017 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 198 6.5E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 SUPERFAMILY SSF52172 5 130 2.99E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 5.4E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 5.4E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28290 63d091e5ebcac5aa2a041529532bec26 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 5.4E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26205 81357b270d064e257a6c082d76d5e3b8 424 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 143 8.1E-19 T 06-07-2017 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS26205 81357b270d064e257a6c082d76d5e3b8 424 SUPERFAMILY SSF53756 1 417 1.37E-103 T 06-07-2017 APT55_RS26205 81357b270d064e257a6c082d76d5e3b8 424 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 256 394 2.3E-13 T 06-07-2017 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 APT55_RS26205 81357b270d064e257a6c082d76d5e3b8 424 Gene3D G3DSA:3.40.50.2000 1 261 2.5E-67 T 06-07-2017 APT55_RS26205 81357b270d064e257a6c082d76d5e3b8 424 Gene3D G3DSA:3.40.50.2000 262 403 1.2E-5 T 06-07-2017 APT55_RS03805 14f467d87e9c48eb18b8fc38425acdc0 627 Pfam PF00999 Sodium/hydrogen exchanger family 11 389 6.2E-49 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS03805 14f467d87e9c48eb18b8fc38425acdc0 627 Gene3D G3DSA:3.40.50.720 404 493 3.1E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03805 14f467d87e9c48eb18b8fc38425acdc0 627 Pfam PF02254 TrkA-N domain 404 492 1.4E-11 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT55_RS03805 14f467d87e9c48eb18b8fc38425acdc0 627 SUPERFAMILY SSF51735 403 497 7.38E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 Gene3D G3DSA:1.10.8.60 403 453 7.7E-11 T 06-07-2017 APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 Gene3D G3DSA:3.40.50.300 223 402 7.4E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 SUPERFAMILY SSF52540 223 459 2.07E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 262 393 4.1E-25 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 SMART SM00382 258 396 2.5E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18395 af355c3f87d692f5a4b15b0ed0844d2d 502 SUPERFAMILY SSF52540 69 208 3.64E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 101 291 1.2E-51 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 294 6.2E-80 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 PRINTS PR01755 Bacterial translocase SecF protein signature 157 171 1.8E-24 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 PRINTS PR01755 Bacterial translocase SecF protein signature 210 228 1.8E-24 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 PRINTS PR01755 Bacterial translocase SecF protein signature 36 51 1.8E-24 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 PRINTS PR01755 Bacterial translocase SecF protein signature 242 257 1.8E-24 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 Gene3D G3DSA:1.20.1640.10 110 305 3.0E-25 T 06-07-2017 APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 Pfam PF07549 SecD/SecF GG Motif 36 57 2.3E-6 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 3 305 27.612 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 SUPERFAMILY SSF82866 93 305 8.11E-38 T 06-07-2017 APT55_RS24160 b2747c86e093888ec22206eb1c2daf60 320 Pfam PF02355 Protein export membrane protein 116 303 1.2E-66 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APT55_RS10720 67a2fbe04c6a287a374425541b661d28 162 SUPERFAMILY SSF141523 47 161 1.7E-35 T 06-07-2017 APT55_RS10720 67a2fbe04c6a287a374425541b661d28 162 Gene3D G3DSA:2.40.440.10 44 161 7.7E-31 T 06-07-2017 APT55_RS10720 67a2fbe04c6a287a374425541b661d28 162 Pfam PF03734 L,D-transpeptidase catalytic domain 49 161 2.5E-23 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 APT55_RS31565 fc657d16feecacc32627ad7069b5aa54 363 Pfam PF14518 Iron-containing redox enzyme 177 340 6.3E-19 T 06-07-2017 IPR028201 PqqC-like protein APT55_RS31565 fc657d16feecacc32627ad7069b5aa54 363 SMART SM01236 207 311 1.1E-13 T 06-07-2017 APT55_RS31565 fc657d16feecacc32627ad7069b5aa54 363 Gene3D G3DSA:1.20.910.10 145 356 1.5E-33 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS31565 fc657d16feecacc32627ad7069b5aa54 363 SUPERFAMILY SSF48613 169 325 1.19E-8 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 Gene3D G3DSA:3.20.20.100 6 315 2.5E-89 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 Pfam PF00248 Aldo/keto reductase family 17 311 6.3E-67 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 PRINTS PR00069 Aldo-keto reductase signature 106 124 4.1E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 PRINTS PR00069 Aldo-keto reductase signature 138 155 4.1E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 PRINTS PR00069 Aldo-keto reductase signature 48 72 4.1E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 SUPERFAMILY SSF51430 5 316 6.81E-85 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS15300 5cdff9f29f6b46ff949a596f51d114d4 317 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 138 155 - T 06-07-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 APT55_RS21895 fa6039130dda3b81e70432ecfe0169f3 389 Pfam PF00155 Aminotransferase class I and II 36 383 3.0E-55 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS21895 fa6039130dda3b81e70432ecfe0169f3 389 Gene3D G3DSA:3.40.640.10 47 256 1.4E-51 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS21895 fa6039130dda3b81e70432ecfe0169f3 389 Gene3D G3DSA:3.90.1150.10 257 388 4.8E-36 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS21895 fa6039130dda3b81e70432ecfe0169f3 389 SUPERFAMILY SSF53383 1 388 2.36E-95 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS00895 e1e2de02f7b3861b690268728e92c1ea 325 SUPERFAMILY SSF103515 46 325 1.83E-61 T 06-07-2017 IPR005546 Autotransporter beta-domain APT55_RS00895 e1e2de02f7b3861b690268728e92c1ea 325 Gene3D G3DSA:2.40.128.130 37 325 7.5E-66 T 06-07-2017 IPR005546 Autotransporter beta-domain APT55_RS00895 e1e2de02f7b3861b690268728e92c1ea 325 Pfam PF03797 Autotransporter beta-domain 49 310 9.7E-49 T 06-07-2017 IPR005546 Autotransporter beta-domain APT55_RS00895 e1e2de02f7b3861b690268728e92c1ea 325 SMART SM00869 50 314 2.2E-46 T 06-07-2017 IPR005546 Autotransporter beta-domain APT55_RS00895 e1e2de02f7b3861b690268728e92c1ea 325 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 62 325 3.6E-32 T 06-07-2017 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SUPERFAMILY SSF52540 161 425 2.41E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SUPERFAMILY SSF48452 588 738 5.03E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Gene3D G3DSA:1.25.40.10 714 770 2.2E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF00931 NB-ARC domain 180 434 3.6E-20 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SUPERFAMILY SSF48452 459 624 2.19E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 PRINTS PR00381 Kinesin light chain signature 672 689 2.1E-14 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 PRINTS PR00381 Kinesin light chain signature 751 772 2.1E-14 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 PRINTS PR00381 Kinesin light chain signature 716 736 2.1E-14 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 PRINTS PR00381 Kinesin light chain signature 607 625 2.1E-14 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Gene3D G3DSA:1.25.40.10 548 708 1.7E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SUPERFAMILY SSF48452 712 831 4.74E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF13676 TIR domain 9 116 3.1E-26 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Gene3D G3DSA:1.25.40.10 771 831 9.2E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00255 6 136 0.0045 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Gene3D G3DSA:3.40.50.10140 8 120 2.0E-21 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SUPERFAMILY SSF52200 5 116 1.57E-22 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF13176 Tetratricopeptide repeat 553 586 9.7E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Gene3D G3DSA:3.40.50.300 175 253 5.6E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF13424 Tetratricopeptide repeat 590 666 5.4E-23 T 06-07-2017 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF13424 Tetratricopeptide repeat 758 832 2.7E-15 T 06-07-2017 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 Pfam PF13424 Tetratricopeptide repeat 674 750 5.0E-22 T 06-07-2017 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 802 835 33.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 550 583 0.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 760 793 0.61 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 718 751 0.0033 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 634 667 9.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 592 625 0.0012 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12020 d3786e95d5476ee1b706316d130266c5 884 SMART SM00028 676 709 12.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 Gene3D G3DSA:3.30.70.1150 83 162 1.4E-30 T 06-07-2017 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 SUPERFAMILY SSF55021 1 76 1.29E-23 T 06-07-2017 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 Pfam PF10369 Small subunit of acetolactate synthase 84 156 1.1E-27 T 06-07-2017 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 Pfam PF13710 ACT domain 12 73 2.5E-18 T 06-07-2017 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 Gene3D G3DSA:3.30.70.260 1 78 4.3E-37 T 06-07-2017 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 SUPERFAMILY SSF55021 79 158 3.2E-25 T 06-07-2017 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 6.1E-67 T 06-07-2017 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT55_RS25635 76a28e2dc995fccb7b3259159ad92ca6 175 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 9.0E-36 T 06-07-2017 APT55_RS12180 556463ea6f2dc9d0ef4820b9a95976d0 422 Pfam PF00534 Glycosyl transferases group 1 214 388 2.0E-43 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12180 556463ea6f2dc9d0ef4820b9a95976d0 422 Gene3D G3DSA:3.40.50.2000 196 387 4.4E-45 T 06-07-2017 APT55_RS12180 556463ea6f2dc9d0ef4820b9a95976d0 422 Pfam PF13439 Glycosyltransferase Family 4 28 206 2.5E-27 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS12180 556463ea6f2dc9d0ef4820b9a95976d0 422 SUPERFAMILY SSF53756 28 410 8.24E-93 T 06-07-2017 APT55_RS21680 2fa23509df2f7e5d5905c7b9561c4968 133 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 130 9.816 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS21680 2fa23509df2f7e5d5905c7b9561c4968 133 Pfam PF01850 PIN domain 3 124 1.4E-16 T 06-07-2017 IPR002716 PIN domain APT55_RS21680 2fa23509df2f7e5d5905c7b9561c4968 133 SUPERFAMILY SSF88723 1 131 3.36E-35 T 06-07-2017 IPR029060 PIN domain-like APT55_RS21680 2fa23509df2f7e5d5905c7b9561c4968 133 Gene3D G3DSA:3.40.50.1010 1 131 1.5E-34 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10265 3e7ffc01979142c8436848d682b974a5 457 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 15 443 56.161 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT55_RS10265 3e7ffc01979142c8436848d682b974a5 457 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 15 439 1.6E-221 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT55_RS10265 3e7ffc01979142c8436848d682b974a5 457 Pfam PF01964 Radical SAM ThiC family 17 435 2.7E-197 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 SUPERFAMILY SSF52540 3 239 1.52E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 Pfam PF00005 ABC transporter 19 160 3.2E-38 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 Gene3D G3DSA:3.40.50.300 3 233 3.3E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 Gene3D G3DSA:2.40.50.100 278 324 6.7E-5 T 06-07-2017 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 SUPERFAMILY SSF50331 257 329 1.64E-10 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 Pfam PF03459 TOBE domain 275 330 1.2E-10 T 06-07-2017 IPR005116 Transport-associated OB, type 1 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 239 1.3E-132 T 06-07-2017 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 APT55_RS02535 6d08d6a3ad526151f68c01a8a065cd74 338 SMART SM00382 27 210 1.2E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09655 b30a0cef0705fd41e04a441bc64ff5e1 182 PIRSF PIRSF006806 1 175 7.8E-39 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT55_RS09655 b30a0cef0705fd41e04a441bc64ff5e1 182 Gene3D G3DSA:3.40.50.10420 3 177 7.6E-42 T 06-07-2017 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain APT55_RS09655 b30a0cef0705fd41e04a441bc64ff5e1 182 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 173 1.6E-47 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT55_RS09655 b30a0cef0705fd41e04a441bc64ff5e1 182 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 173 8.1E-33 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT55_RS09655 b30a0cef0705fd41e04a441bc64ff5e1 182 SUPERFAMILY SSF100950 1 177 8.51E-45 T 06-07-2017 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 SMART SM00448 3 114 1.6E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 Gene3D G3DSA:1.10.10.10 127 222 6.5E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 SUPERFAMILY SSF52172 3 125 8.82E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 Gene3D G3DSA:3.40.50.2300 3 122 4.9E-35 T 06-07-2017 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 221 1.4E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 Pfam PF00072 Response regulator receiver domain 5 114 7.7E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 SUPERFAMILY SSF46894 127 222 2.83E-28 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS07180 bb83d3b937bd1ddd7bc8a0c5baab6958 223 SMART SM00862 150 221 5.7E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 SUPERFAMILY SSF52540 3 206 5.72E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 PIRSF PIRSF006755 1 226 3.2E-59 T 06-07-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 219 25.131 T 06-07-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 168 1.2E-48 T 06-07-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 Gene3D G3DSA:3.40.50.300 2 208 1.6E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20950 e1c1dfe0715ef0d16fe8321917411517 228 Pfam PF13500 AAA domain 3 204 6.1E-45 T 06-07-2017 APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 Gene3D G3DSA:3.40.50.620 222 367 1.5E-32 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 Gene3D G3DSA:3.40.50.620 452 564 1.5E-32 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 Gene3D G3DSA:3.60.20.10 19 208 8.8E-27 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 Pfam PF00733 Asparagine synthase 234 553 1.4E-30 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 SUPERFAMILY SSF52402 222 368 2.02E-35 T 06-07-2017 APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 SUPERFAMILY SSF52402 463 573 2.02E-35 T 06-07-2017 APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 PIRSF PIRSF001589 1 608 3.0E-45 T 06-07-2017 APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 SUPERFAMILY SSF56235 1 207 6.79E-25 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS17995 4df5c997614dd72aff9399f4748edc31 621 Pfam PF13537 Glutamine amidotransferase domain 59 154 2.9E-9 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 SUPERFAMILY SSF53686 5 355 1.44E-105 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Gene3D G3DSA:3.40.1020.10 212 380 2.6E-51 T 06-07-2017 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Gene3D G3DSA:3.40.1020.10 381 502 2.3E-45 T 06-07-2017 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 4 502 1.5E-262 T 06-07-2017 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 SUPERFAMILY SSF55021 409 502 7.1E-28 T 06-07-2017 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Gene3D G3DSA:3.40.50.1100 50 146 8.1E-37 T 06-07-2017 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 306 3.0E-83 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 408 2.7E-28 T 06-07-2017 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT55_RS18690 0ecea766c5e5ecbf86a6d9b1756a7254 503 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 415 502 8.7E-22 T 06-07-2017 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT55_RS15355 6761481befebab973ea763d5e774738c 565 Pfam PF04966 Carbohydrate-selective porin, OprB family 117 565 3.4E-58 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS15355 6761481befebab973ea763d5e774738c 565 Pfam PF00395 S-layer homology domain 53 92 9.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2290 2308 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF56300 3 351 5.9E-50 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Pfam PF13449 Esterase-like activity of phytase 917 1266 2.7E-65 T 06-07-2017 IPR027372 Phytase-like domain APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF51004 823 877 6.02E-18 T 06-07-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF51004 648 793 6.02E-18 T 06-07-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Gene3D G3DSA:3.60.21.10 3 352 1.4E-71 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF56219 1824 2127 2.09E-31 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Pfam PF02872 5'-nucleotidase, C-terminal domain 362 569 7.2E-23 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Gene3D G3DSA:2.150.10.10 2263 2397 3.5E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF55816 442 617 1.96E-30 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF55816 360 415 1.96E-30 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR01607 Apyrase family signature 3 21 5.8E-7 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR01607 Apyrase family signature 281 301 5.8E-7 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR01607 Apyrase family signature 445 468 5.8E-7 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR01607 Apyrase family signature 234 257 5.8E-7 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR01607 Apyrase family signature 540 559 5.8E-7 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 ProSitePatterns PS00786 5'-nucleotidase signature 2. 85 96 - T 06-07-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF51120 2099 2157 2.88E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 SUPERFAMILY SSF51120 2260 2365 2.88E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR00313 NodO calcium binding signature 2303 2311 2.9E-8 T 06-07-2017 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR00313 NodO calcium binding signature 2321 2330 2.9E-8 T 06-07-2017 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR00313 NodO calcium binding signature 2282 2293 2.9E-8 T 06-07-2017 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 PRINTS PR00313 NodO calcium binding signature 2312 2320 2.9E-8 T 06-07-2017 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2308 2326 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Gene3D G3DSA:3.90.780.10 362 631 1.8E-41 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Gene3D G3DSA:2.130.10.10 663 953 1.3E-11 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Gene3D G3DSA:3.60.10.10 1826 2127 1.1E-35 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 1829 2120 7.1E-12 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS03360 5d55d1431c3d993be65111ea830ea231 2403 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2299 2317 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SUPERFAMILY SSF52172 487 615 1.71E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Gene3D G3DSA:1.20.120.160 253 323 1.1E-5 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SMART SM00448 1 111 7.1E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SMART SM00448 490 603 1.6E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SMART SM00448 359 478 3.8E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SUPERFAMILY SSF47226 254 334 3.4E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Gene3D G3DSA:3.40.50.2300 2 119 2.7E-22 T 06-07-2017 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SUPERFAMILY SSF46894 127 221 1.25E-23 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Pfam PF01627 Hpt domain 251 336 6.9E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Pfam PF00072 Response regulator receiver domain 492 603 1.2E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Pfam PF00072 Response regulator receiver domain 3 112 2.1E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Pfam PF00072 Response regulator receiver domain 362 476 4.0E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Gene3D G3DSA:1.10.10.10 125 222 6.0E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SUPERFAMILY SSF52172 357 483 2.28E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Gene3D G3DSA:3.40.50.2300 358 483 3.9E-23 T 06-07-2017 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Gene3D G3DSA:3.40.50.2300 488 614 2.0E-30 T 06-07-2017 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SUPERFAMILY SSF52172 2 126 2.42E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 SMART SM00862 144 220 3.0E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS09975 e1711278ad9af991e748d6faa5544ea0 617 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.4E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS26725 f2b471cd0e4ffce0e149ca77490152e1 215 SUPERFAMILY SSF49764 14 147 3.4E-34 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS26725 f2b471cd0e4ffce0e149ca77490152e1 215 Pfam PF00011 Hsp20/alpha crystallin family 47 143 3.6E-19 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain APT55_RS26725 f2b471cd0e4ffce0e149ca77490152e1 215 Gene3D G3DSA:2.60.40.790 2 147 4.6E-35 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 Pfam PF01189 16S rRNA methyltransferase RsmB/F 244 438 4.6E-65 T 06-07-2017 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 SUPERFAMILY SSF53335 141 438 3.84E-78 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 371 387 1.4E-28 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 226 240 1.4E-28 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 255 265 1.4E-28 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 321 333 1.4E-28 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 422 439 1.4E-28 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 Gene3D G3DSA:3.40.50.150 237 438 1.9E-61 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 SUPERFAMILY SSF48013 4 155 3.4E-29 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 6 438 4.6E-131 T 06-07-2017 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 Gene3D G3DSA:1.10.940.10 3 156 4.2E-40 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 Gene3D G3DSA:3.30.70.1170 181 234 1.2E-8 T 06-07-2017 APT55_RS16735 8f18b7070a6125bbfe08c77f326b051f 440 Pfam PF01029 NusB family 4 125 8.8E-25 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 SUPERFAMILY SSF90123 28 359 9.03E-48 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 SUPERFAMILY SSF52540 369 612 1.3E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 ProSitePatterns PS00211 ABC transporters family signature. 514 528 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 Gene3D G3DSA:1.20.1560.10 32 358 1.8E-43 T 06-07-2017 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 Pfam PF00664 ABC transporter transmembrane region 79 322 4.5E-29 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 Gene3D G3DSA:3.40.50.300 377 603 1.5E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 Pfam PF00005 ABC transporter 393 542 1.1E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS01680 caeed9020c2327e6b5e9d6164342a7a7 621 SMART SM00382 402 588 3.7E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS05680 bc4ed150d352e14d48b9ad6fc4667c26 380 Pfam PF03663 Glycosyl hydrolase family 76 9 312 5.0E-63 T 06-07-2017 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 APT55_RS05680 bc4ed150d352e14d48b9ad6fc4667c26 380 SUPERFAMILY SSF48208 12 285 4.25E-51 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS05680 bc4ed150d352e14d48b9ad6fc4667c26 380 Gene3D G3DSA:1.50.10.10 7 231 1.9E-45 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS23170 0c84182c05c00fcdefa72c1b36645817 236 Gene3D G3DSA:3.30.530.20 81 221 9.7E-11 T 06-07-2017 IPR023393 START-like domain APT55_RS23170 0c84182c05c00fcdefa72c1b36645817 236 SUPERFAMILY SSF55961 81 222 1.97E-27 T 06-07-2017 APT55_RS23170 0c84182c05c00fcdefa72c1b36645817 236 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 91 214 6.5E-21 T 06-07-2017 IPR005031 Coenzyme Q-binding protein COQ10, START domain APT55_RS15000 4d3300086bf3bbb51a253e666953bac8 372 SUPERFAMILY SSF53756 2 372 7.18E-75 T 06-07-2017 APT55_RS15000 4d3300086bf3bbb51a253e666953bac8 372 Pfam PF00534 Glycosyl transferases group 1 195 350 2.5E-35 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15000 4d3300086bf3bbb51a253e666953bac8 372 Gene3D G3DSA:3.40.50.2000 194 351 4.1E-25 T 06-07-2017 APT55_RS21630 508bada06540f9e3f2615985bfed5c13 133 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 8 114 8.1E-12 T 06-07-2017 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like APT55_RS21630 508bada06540f9e3f2615985bfed5c13 133 SUPERFAMILY SSF110857 6 109 1.57E-12 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like APT55_RS21630 508bada06540f9e3f2615985bfed5c13 133 Gene3D G3DSA:3.10.490.10 6 118 3.2E-16 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like APT55_RS29520 4ef7367a35188d9f2bed628f88e19b1f 354 Gene3D G3DSA:1.10.443.10 168 337 9.8E-25 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS29520 4ef7367a35188d9f2bed628f88e19b1f 354 SUPERFAMILY SSF56349 81 338 1.93E-36 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS29520 4ef7367a35188d9f2bed628f88e19b1f 354 Pfam PF00589 Phage integrase family 170 336 1.0E-15 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 40 481 1.6E-100 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 Gene3D G3DSA:3.40.710.10 55 96 7.3E-5 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 Gene3D G3DSA:3.40.710.10 243 482 1.4E-54 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 68 461 1.0E-77 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 SUPERFAMILY SSF56601 37 482 6.02E-83 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 438 451 9.8E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 361 375 9.8E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 376 390 9.8E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 79 98 9.8E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS15360 33f92f1e27dc3177802187b8189cf9cf 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 301 323 9.8E-22 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 SUPERFAMILY SSF51735 178 419 1.92E-69 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 PIRSF PIRSF000185 1 422 1.2E-164 T 06-07-2017 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 32 159 2.7E-50 T 06-07-2017 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 Gene3D G3DSA:3.40.50.720 178 419 2.1E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 169 191 2.7E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 347 358 2.7E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 211 231 2.7E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 89 103 2.7E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 97 110 - T 06-07-2017 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 Gene3D G3DSA:3.40.192.10 36 176 1.6E-52 T 06-07-2017 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 SUPERFAMILY SSF53223 4 180 2.49E-63 T 06-07-2017 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 SMART SM00839 180 419 7.5E-83 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS09235 bc9c39fad51991221b831073bbf6ae8b 427 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 178 419 4.7E-71 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 Gene3D G3DSA:2.30.130.10 274 365 3.3E-28 T 06-07-2017 IPR015947 PUA-like domain APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 Pfam PF00696 Amino acid kinase family 4 233 4.5E-45 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 Gene3D G3DSA:3.40.1160.10 2 254 1.1E-62 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 3 365 1.5E-146 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 SUPERFAMILY SSF88697 276 366 1.05E-22 T 06-07-2017 IPR015947 PUA-like domain APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 SUPERFAMILY SSF53633 3 256 1.7E-71 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 3 257 36.65 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 206 223 - T 06-07-2017 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PIRSF PIRSF000729 1 367 7.0E-143 T 06-07-2017 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 SMART SM00359 276 359 1.6E-16 T 06-07-2017 IPR002478 PUA domain GO:0003723 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 Pfam PF01472 PUA domain 276 350 4.5E-21 T 06-07-2017 IPR002478 PUA domain GO:0003723 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PRINTS PR00474 Glutamate 5-kinase family signature 75 103 1.2E-53 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PRINTS PR00474 Glutamate 5-kinase family signature 115 136 1.2E-53 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PRINTS PR00474 Glutamate 5-kinase family signature 208 228 1.2E-53 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PRINTS PR00474 Glutamate 5-kinase family signature 147 174 1.2E-53 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS14775 3f24cc530dd152272c95dca8780cad9a 367 PRINTS PR00474 Glutamate 5-kinase family signature 41 55 1.2E-53 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 Pfam PF00069 Protein kinase domain 26 281 6.2E-37 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 Gene3D G3DSA:3.30.200.20 17 98 1.7E-16 T 06-07-2017 APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 SMART SM00220 26 284 2.7E-32 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 SUPERFAMILY SSF56112 20 285 5.26E-57 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 Gene3D G3DSA:1.10.510.10 99 287 2.1E-36 T 06-07-2017 APT55_RS00560 5f7134a4938e0cbc4fccd7684ef091c8 342 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 32 57 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS10410 956284159694cbe4937af73043b144f8 530 SUPERFAMILY SSF49785 321 527 1.49E-51 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS10410 956284159694cbe4937af73043b144f8 530 Gene3D G3DSA:2.60.120.260 321 527 3.5E-57 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS10410 956284159694cbe4937af73043b144f8 530 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 9 529 2.6E-130 T 06-07-2017 IPR005674 CocE/Serine esterase GO:0016787 APT55_RS10410 956284159694cbe4937af73043b144f8 530 Gene3D G3DSA:1.10.3020.10 142 219 5.8E-6 T 06-07-2017 APT55_RS10410 956284159694cbe4937af73043b144f8 530 SUPERFAMILY SSF53474 4 327 1.88E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10410 956284159694cbe4937af73043b144f8 530 Gene3D G3DSA:3.40.50.1820 3 141 1.5E-79 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10410 956284159694cbe4937af73043b144f8 530 Gene3D G3DSA:3.40.50.1820 220 320 1.5E-79 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10410 956284159694cbe4937af73043b144f8 530 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 308 503 6.6E-29 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 APT55_RS10410 956284159694cbe4937af73043b144f8 530 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 12 270 4.4E-64 T 06-07-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 APT55_RS10410 956284159694cbe4937af73043b144f8 530 SMART SM00939 294 526 1.3E-63 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 APT55_RS08745 6a9e2fe595e64ae1613f165993def0fb 251 SUPERFAMILY SSF52743 7 223 3.4E-25 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS08745 6a9e2fe595e64ae1613f165993def0fb 251 Gene3D G3DSA:3.40.50.200 7 238 8.4E-21 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS08745 6a9e2fe595e64ae1613f165993def0fb 251 Pfam PF00082 Subtilase family 7 179 1.9E-7 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS22100 c843a36369b19c2aece3e7a3e87d23ef 153 Pfam PF02308 MgtC family 11 139 2.9E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS22100 c843a36369b19c2aece3e7a3e87d23ef 153 PRINTS PR01837 MgtC/SapB protein signature 33 51 3.1E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS22100 c843a36369b19c2aece3e7a3e87d23ef 153 PRINTS PR01837 MgtC/SapB protein signature 14 33 3.1E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS22100 c843a36369b19c2aece3e7a3e87d23ef 153 PRINTS PR01837 MgtC/SapB protein signature 60 82 3.1E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS22100 c843a36369b19c2aece3e7a3e87d23ef 153 PRINTS PR01837 MgtC/SapB protein signature 93 117 3.1E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.90.640.10 224 309 7.4E-32 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Pfam PF00012 Hsp70 protein 4 598 7.8E-266 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 SUPERFAMILY SSF100934 528 603 2.47E-7 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.30.30.30 53 108 6.1E-19 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.30.420.40 191 223 2.1E-38 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.30.420.40 313 355 2.1E-38 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 598 1.9E-301 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:2.60.34.10 384 526 1.4E-72 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 SUPERFAMILY SSF53067 185 376 4.71E-68 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:1.20.1270.10 527 597 2.7E-25 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.30.420.40 4 52 5.9E-65 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Gene3D G3DSA:3.30.420.40 118 190 5.9E-65 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 SUPERFAMILY SSF100920 378 534 1.83E-61 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 SUPERFAMILY SSF53067 2 182 5.75E-63 T 06-07-2017 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 137 157 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 359 379 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 463 479 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 196 206 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 328 344 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 PRINTS PR00301 70kDa heat shock protein signature 382 401 1.7E-80 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS08670 c8d0fed1d56baa054167b73d4339f03c 633 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 632 37.786 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 353 362 - T 06-07-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 10 480 7.5E-253 T 06-07-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 SUPERFAMILY SSF47917 365 481 5.49E-52 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Gene3D G3DSA:1.10.1140.10 365 481 3.1E-58 T 06-07-2017 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 13 85 2.4E-21 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Hamap MF_01347 ATP synthase subunit beta [atpB]. 8 480 57.091 T 06-07-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Gene3D G3DSA:3.40.50.300 88 362 1.4E-111 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 SUPERFAMILY SSF50615 9 87 1.46E-27 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 SMART SM00382 154 346 6.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Gene3D G3DSA:2.40.10.170 3 87 2.9E-34 T 06-07-2017 APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 SUPERFAMILY SSF52540 89 367 3.03E-91 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22755 45bef0fee863afee864bf9bb3427bca7 483 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 142 362 1.1E-64 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 Gene3D G3DSA:1.10.260.40 4 82 1.1E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 Hamap MF_00535 Cyanate hydratase [cynS]. 1 149 73.32 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 TIGRFAM TIGR00673 cynS: cyanase 1 149 2.2E-66 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 Gene3D G3DSA:3.30.1160.10 83 149 7.6E-38 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 SUPERFAMILY SSF55234 82 149 2.88E-31 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 SUPERFAMILY SSF47413 7 74 6.75E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PIRSF PIRSF001263 1 149 3.2E-61 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 SMART SM01116 77 149 1.6E-48 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 Pfam PF02560 Cyanate lyase C-terminal domain 81 148 1.1E-36 T 06-07-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PRINTS PR01693 Cyanase signature 17 32 1.3E-34 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PRINTS PR01693 Cyanase signature 37 54 1.3E-34 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PRINTS PR01693 Cyanase signature 85 99 1.3E-34 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PRINTS PR01693 Cyanase signature 134 144 1.3E-34 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS07065 75553159406be00c11c48ec13e0b3df8 149 PRINTS PR01693 Cyanase signature 103 119 1.3E-34 T 06-07-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS02665 ef007ee5afc91d9ed33bec2377bd7725 458 Gene3D G3DSA:3.40.50.2000 202 399 2.4E-48 T 06-07-2017 APT55_RS02665 ef007ee5afc91d9ed33bec2377bd7725 458 Pfam PF13439 Glycosyltransferase Family 4 39 215 1.7E-27 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS02665 ef007ee5afc91d9ed33bec2377bd7725 458 SUPERFAMILY SSF53756 39 422 1.71E-93 T 06-07-2017 APT55_RS02665 ef007ee5afc91d9ed33bec2377bd7725 458 Pfam PF00534 Glycosyl transferases group 1 224 400 3.8E-48 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10910 dcf00b78b4c57d67c9cd2834b04f503a 317 Gene3D G3DSA:3.40.50.1820 33 306 7.4E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10910 dcf00b78b4c57d67c9cd2834b04f503a 317 Pfam PF00756 Putative esterase 63 298 1.3E-19 T 06-07-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 APT55_RS10910 dcf00b78b4c57d67c9cd2834b04f503a 317 SUPERFAMILY SSF53474 44 303 6.11E-36 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 Gene3D G3DSA:1.10.287.90 42 113 4.4E-13 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 SUPERFAMILY SSF49503 157 298 2.54E-37 T 06-07-2017 IPR008972 Cupredoxin APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 SUPERFAMILY SSF81464 14 116 1.57E-17 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 31 111 5.1E-9 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 Gene3D G3DSA:2.60.40.420 157 285 7.4E-33 T 06-07-2017 IPR008972 Cupredoxin APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 118 9.3E-5 T 06-07-2017 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 PRINTS PR01166 Cytochrome c oxidase subunit II signature 86 98 9.3E-5 T 06-07-2017 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 PRINTS PR01166 Cytochrome c oxidase subunit II signature 200 220 9.3E-5 T 06-07-2017 APT55_RS10430 745ff1cbe7d6627b1afe9efe60b3d633 327 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 182 246 5.5E-6 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS24265 f20399af8272d096765365f649cb7423 134 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS24265 f20399af8272d096765365f649cb7423 134 Gene3D G3DSA:3.30.70.260 3 69 2.7E-14 T 06-07-2017 APT55_RS24265 f20399af8272d096765365f649cb7423 134 Pfam PF09383 NIL domain 4 70 6.9E-15 T 06-07-2017 IPR018449 NIL domain APT55_RS24265 f20399af8272d096765365f649cb7423 134 SUPERFAMILY SSF54862 67 131 8.84E-19 T 06-07-2017 APT55_RS24265 f20399af8272d096765365f649cb7423 134 Pfam PF14697 4Fe-4S dicluster domain 78 130 3.0E-9 T 06-07-2017 APT55_RS24265 f20399af8272d096765365f649cb7423 134 SMART SM00930 1 73 8.5E-18 T 06-07-2017 IPR018449 NIL domain APT55_RS24265 f20399af8272d096765365f649cb7423 134 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 115 126 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS24265 f20399af8272d096765365f649cb7423 134 Gene3D G3DSA:3.30.70.20 70 132 7.8E-17 T 06-07-2017 APT55_RS24265 f20399af8272d096765365f649cb7423 134 SUPERFAMILY SSF55021 3 71 2.16E-13 T 06-07-2017 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 PRINTS PR00320 G protein beta WD-40 repeat signature 694 708 4.9E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 PRINTS PR00320 G protein beta WD-40 repeat signature 906 920 4.9E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 PRINTS PR00320 G protein beta WD-40 repeat signature 1035 1049 4.9E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Gene3D G3DSA:2.130.10.10 544 776 4.8E-86 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1035 1049 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 906 920 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF14516 AAA-like domain 14 353 3.6E-32 T 06-07-2017 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 694 708 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 569 583 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 937 961 0.25 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 802 836 3.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 1013 1048 1.2E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 1055 1090 1.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 669 707 2.7E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 628 664 3.5E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 717 749 8.1E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 853 877 4.8E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 586 623 4.0E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 1094 1131 7.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 881 919 9.4E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Pfam PF00400 WD domain, G-beta repeat 550 581 7.8E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SUPERFAMILY SSF50978 800 1135 9.16E-89 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Gene3D G3DSA:2.130.10.10 968 1135 1.4E-51 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 838 877 8.5E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 668 707 1.2E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 880 919 2.2E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 626 665 1.0E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 797 836 1.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 964 1006 0.78 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 1009 1048 2.2E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 922 961 4.8E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 1093 1132 2.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 752 790 0.007 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 1051 1090 4.8E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 710 749 2.4E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 585 623 2.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SMART SM00320 543 582 6.3E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Gene3D G3DSA:3.40.50.300 47 187 5.6E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SUPERFAMILY SSF52540 26 265 7.97E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 610 624 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 SUPERFAMILY SSF50978 548 837 4.27E-89 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS25185 258e2222598293a25ab2f3f26013c0e6 1168 Gene3D G3DSA:2.130.10.10 777 967 1.1E-58 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Pfam PF00270 DEAD/DEAH box helicase 393 550 1.9E-19 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 SUPERFAMILY SSF52540 511 718 8.22E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Gene3D G3DSA:3.40.50.300 378 572 3.8E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 SMART SM00490 624 708 2.1E-21 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Gene3D G3DSA:3.40.50.300 573 756 4.4E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Gene3D G3DSA:1.10.150.20 123 152 2.5E-4 T 06-07-2017 APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 SMART SM00487 388 577 9.6E-36 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 144 783 2.3E-241 T 06-07-2017 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Gene3D G3DSA:2.40.50.140 162 267 1.1E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 SUPERFAMILY SSF52540 309 572 1.89E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Pfam PF00271 Helicase conserved C-terminal domain 593 708 7.0E-20 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 Pfam PF17191 RecG wedge domain 124 302 6.0E-20 T 06-07-2017 IPR033454 RecG, wedge domain APT55_RS04430 4886219b678aa3fbf2621251e3be3eee 817 SUPERFAMILY SSF50249 118 304 2.74E-40 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 289 296 - T 06-07-2017 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Gene3D G3DSA:3.30.1490.20 123 189 8.1E-29 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 295 6.3E-79 T 06-07-2017 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 SMART SM01209 103 295 1.4E-134 T 06-07-2017 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 SUPERFAMILY SSF52440 2 103 2.16E-33 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 102 4.7E-31 T 06-07-2017 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 SUPERFAMILY SSF56059 104 318 5.66E-61 T 06-07-2017 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 SMART SM01210 330 423 4.9E-51 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Gene3D G3DSA:3.40.50.20 2 95 8.0E-34 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 1.2E-30 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Gene3D G3DSA:3.90.600.10 330 422 1.3E-33 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Gene3D G3DSA:3.30.470.20 190 327 8.6E-57 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 422 5.3E-166 T 06-07-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 40.978 T 06-07-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT55_RS12010 c501df953e60cbc82a6e74cbc27509cf 427 SUPERFAMILY SSF51246 329 422 1.15E-30 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS28475 b2ded1fd5bd37fb09db8ff53c3ede347 109 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 44 106 8.5E-8 T 06-07-2017 IPR010221 VCBS repeat APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 Pfam PF01177 Asp/Glu/Hydantoin racemase 20 227 1.1E-29 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 SUPERFAMILY SSF53681 123 272 2.88E-40 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 Hamap MF_00258 Glutamate racemase [murI]. 18 268 38.249 T 06-07-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 Gene3D G3DSA:3.40.50.1860 18 186 2.2E-55 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 84 92 - T 06-07-2017 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 193 203 - T 06-07-2017 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 TIGRFAM TIGR00067 glut_race: glutamate racemase 20 266 2.3E-83 T 06-07-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS15655 1000e31817532d8cf27b59e835f9f2af 283 SUPERFAMILY SSF53681 19 121 3.11E-34 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 751 797 0.095 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 592 625 0.15 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 700 747 2.5E-8 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 652 695 1.7E-9 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 43 484 1.2E-147 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Gene3D G3DSA:3.90.199.10 350 415 2.3E-113 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Gene3D G3DSA:3.90.199.10 41 247 2.3E-113 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 SUPERFAMILY SSF101904 536 856 6.41E-65 T 06-07-2017 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Gene3D G3DSA:2.120.10.90 536 845 5.4E-70 T 06-07-2017 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 20 846 6.1E-276 T 06-07-2017 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 SUPERFAMILY SSF56719 41 503 3.4E-168 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 SMART SM00434 22 481 1.7E-256 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS12650 69028d504dcff53589331f0462c4e86c 858 Gene3D G3DSA:3.30.1360.40 248 348 1.9E-36 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain APT55_RS10305 16fbf2e1ce809e34c58de50d858df8fb 141 Gene3D G3DSA:2.40.50.180 44 91 3.4E-5 T 06-07-2017 APT55_RS10305 16fbf2e1ce809e34c58de50d858df8fb 141 SUPERFAMILY SSF50341 3 141 3.14E-30 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10305 16fbf2e1ce809e34c58de50d858df8fb 141 SMART SM00260 1 140 1.6E-23 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10305 16fbf2e1ce809e34c58de50d858df8fb 141 Pfam PF01584 CheW-like domain 4 140 1.4E-27 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS13880 1b61e86510220cbaaa70209a7bea83d3 196 Hamap MF_01460 Chromophore lyase CpcT/CpeT [cpcT]. 3 190 39.301 T 06-07-2017 IPR010404 Chromophore lyase CpcT/CpeT GO:0016829|GO:0017009 APT55_RS13880 1b61e86510220cbaaa70209a7bea83d3 196 Pfam PF06206 CpeT/CpcT family (DUF1001) 9 186 2.4E-69 T 06-07-2017 IPR010404 Chromophore lyase CpcT/CpeT GO:0016829|GO:0017009 APT55_RS15615 3324fa2f3c526551b4cc6524b0a44f2b 457 Pfam PF00999 Sodium/hydrogen exchanger family 35 442 2.3E-73 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS31745 6fe33271dc97fe90f9f895fe578eb96a 254 Pfam PF13614 AAA domain 2 165 1.7E-32 T 06-07-2017 IPR025669 AAA domain APT55_RS31745 6fe33271dc97fe90f9f895fe578eb96a 254 Gene3D G3DSA:3.40.50.300 5 251 3.0E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31745 6fe33271dc97fe90f9f895fe578eb96a 254 SUPERFAMILY SSF52540 1 250 6.11E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF55785 416 543 1.69E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF00072 Response regulator receiver domain 816 929 5.4E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.30.450.20 186 302 4.4E-18 T 06-07-2017 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.30.450.20 303 419 3.4E-20 T 06-07-2017 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.30.450.20 421 545 1.5E-20 T 06-07-2017 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF13188 PAS domain 190 254 5.5E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF13188 PAS domain 432 496 2.5E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00091 314 380 2.5E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00091 431 502 3.7 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00091 189 261 81.0 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.40.50.2300 813 935 7.8E-31 T 06-07-2017 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00388 565 631 5.2E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF00512 His Kinase A (phospho-acceptor) domain 566 630 1.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 PRINTS PR00344 Bacterial sensor protein C-terminal signature 731 741 3.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 PRINTS PR00344 Bacterial sensor protein C-terminal signature 748 766 3.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 727 3.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 PRINTS PR00344 Bacterial sensor protein C-terminal signature 773 786 3.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00448 814 929 6.0E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF55874 620 787 3.27E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF55781 26 184 4.8E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF55785 176 299 6.14E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 428 551 6.9E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 185 306 3.0E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00065 35 185 8.7E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.30.565.10 633 791 3.6E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SMART SM00387 676 789 8.7E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF08448 PAS fold 320 419 2.1E-7 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF47384 551 631 3.14E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF55785 299 406 2.09E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 SUPERFAMILY SSF52172 813 934 2.99E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 677 787 1.4E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Pfam PF01590 GAF domain 55 171 1.0E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:3.30.450.40 29 185 5.0E-12 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08115 885bf9d7bbb0cfb1498209a572135be1 937 Gene3D G3DSA:1.10.287.130 557 627 5.9E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05815 cabc09a2e344c7b774533efe2aa1b4bd 120 SUPERFAMILY SSF82771 36 117 1.44E-8 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS05815 cabc09a2e344c7b774533efe2aa1b4bd 120 SMART SM00465 35 118 3.5E-6 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS05815 cabc09a2e344c7b774533efe2aa1b4bd 120 Pfam PF01541 GIY-YIG catalytic domain 36 113 3.7E-5 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS15685 d7bded3c146ad44a287b79343c3eb964 154 Pfam PF07681 DoxX 28 108 8.3E-19 T 06-07-2017 IPR032808 DoxX family APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 Pfam PF01761 3-dehydroquinate synthase 68 328 2.0E-104 T 06-07-2017 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 Gene3D G3DSA:3.40.50.1970 5 173 6.0E-65 T 06-07-2017 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 PIRSF PIRSF001455 11 364 2.1E-107 T 06-07-2017 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 Gene3D G3DSA:1.20.1090.10 174 360 2.3E-62 T 06-07-2017 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 29 357 3.1E-117 T 06-07-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 3 361 41.285 T 06-07-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT55_RS01840 b584067736d032bdc776ab60adc1f00d 368 SUPERFAMILY SSF56796 19 359 1.31E-106 T 06-07-2017 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 Gene3D G3DSA:3.40.50.2300 5 126 9.5E-7 T 06-07-2017 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 303 2.0E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 317 2.0E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 359 2.0E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 340 2.0E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 Pfam PF00512 His Kinase A (phospho-acceptor) domain 142 206 1.1E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 Gene3D G3DSA:1.10.287.130 132 201 1.4E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 SUPERFAMILY SSF52172 6 134 2.13E-9 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 SMART SM00387 252 362 5.9E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 SMART SM00388 141 207 4.9E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 SUPERFAMILY SSF47384 124 205 6.28E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 SUPERFAMILY SSF55874 196 360 1.57E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 360 2.8E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08995 cc4a7694e47c19daf2b521d2d70d5a32 362 Gene3D G3DSA:3.30.565.10 215 361 4.9E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03565 3b15f284064a55bb9259c96c8f143b20 423 Gene3D G3DSA:3.30.470.20 157 335 8.1E-15 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS03565 3b15f284064a55bb9259c96c8f143b20 423 Pfam PF02655 ATP-grasp domain 159 331 3.1E-10 T 06-07-2017 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 APT55_RS03565 3b15f284064a55bb9259c96c8f143b20 423 SUPERFAMILY SSF56059 156 338 1.47E-21 T 06-07-2017 APT55_RS04715 2512bf064a7f862f8ae76b9c321fa693 304 Gene3D G3DSA:3.40.50.150 108 290 2.2E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04715 2512bf064a7f862f8ae76b9c321fa693 304 SUPERFAMILY SSF53335 59 289 2.17E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04715 2512bf064a7f862f8ae76b9c321fa693 304 Pfam PF08241 Methyltransferase domain 141 239 2.7E-20 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS05770 909f1709377f3d2cdd743414f25bcbfa 133 Pfam PF02469 Fasciclin domain 13 131 8.9E-35 T 06-07-2017 IPR000782 FAS1 domain APT55_RS05770 909f1709377f3d2cdd743414f25bcbfa 133 SMART SM00554 37 133 5.2E-29 T 06-07-2017 IPR000782 FAS1 domain APT55_RS05770 909f1709377f3d2cdd743414f25bcbfa 133 SUPERFAMILY SSF82153 3 131 2.75E-38 T 06-07-2017 IPR000782 FAS1 domain APT55_RS05770 909f1709377f3d2cdd743414f25bcbfa 133 Gene3D G3DSA:2.30.180.10 3 130 1.5E-36 T 06-07-2017 IPR000782 FAS1 domain APT55_RS00740 f02683eac36265037e7a5efb6fcf2bd5 983 Gene3D G3DSA:3.40.1360.10 177 301 3.6E-6 T 06-07-2017 APT55_RS00740 f02683eac36265037e7a5efb6fcf2bd5 983 Pfam PF12965 Domain of unknown function (DUF3854) 166 290 9.0E-34 T 06-07-2017 IPR024385 Domain of unknown function DUF3854 APT55_RS00740 f02683eac36265037e7a5efb6fcf2bd5 983 Gene3D G3DSA:3.40.50.300 608 742 1.4E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00740 f02683eac36265037e7a5efb6fcf2bd5 983 Pfam PF08706 D5 N terminal like 438 575 2.8E-5 T 06-07-2017 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal APT55_RS14475 644fdabd822547a841f7c53520f53866 119 Pfam PF13083 KH domain 11 83 1.3E-16 T 06-07-2017 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF13181 Tetratricopeptide repeat 217 245 0.0014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF13181 Tetratricopeptide repeat 15 45 0.077 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF13414 TPR repeat 357 389 8.5E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF13414 TPR repeat 51 91 9.9E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Gene3D G3DSA:1.25.40.10 200 423 4.9E-57 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF14559 Tetratricopeptide repeat 259 318 2.8E-7 T 06-07-2017 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SUPERFAMILY SSF48452 15 167 1.5E-34 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Pfam PF13432 Tetratricopeptide repeat 116 178 1.2E-6 T 06-07-2017 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 350 383 7.4E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 180 213 6.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 282 315 0.99 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 13 43 420.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 44 77 4.7E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 248 281 3.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 316 349 0.14 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 146 179 7.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 384 417 7.8E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 214 247 0.021 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 112 145 0.0023 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SMART SM00028 78 111 1.0E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Gene3D G3DSA:1.25.40.10 14 95 3.2E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 Gene3D G3DSA:1.25.40.10 96 199 1.5E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19145 7a82cb58b4ffa99f31548a3ed756822c 453 SUPERFAMILY SSF48452 116 417 1.52E-54 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4445 4616 8.79E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5363 5381 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4389 4407 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR00313 NodO calcium binding signature 3816 3824 8.0E-6 T 06-07-2017 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR00313 NodO calcium binding signature 3914 3922 8.0E-6 T 06-07-2017 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR00313 NodO calcium binding signature 3804 3815 8.0E-6 T 06-07-2017 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR00313 NodO calcium binding signature 3989 3998 8.0E-6 T 06-07-2017 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4331 4349 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4565 4583 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4091 4111 6.8E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4207 4374 6.8E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4033 4064 6.8E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5333 5386 4.0E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5680 5694 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 4269 4424 7.4E-22 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 4443 4605 8.5E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5964 6021 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5602 5619 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5452 5507 4.0E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5817 5827 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 3777 3952 4.0E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5887 5900 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5749 5766 2.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 5620 5636 4.0E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Gene3D G3DSA:2.150.10.10 3971 4257 7.9E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5345 5363 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 3989 4010 4.5E-5 T 06-07-2017 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 3298 3316 4.5E-5 T 06-07-2017 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5466 5484 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 5438 5529 1.02E-11 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4272 4290 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF69318 4955 5178 2.53E-24 T 06-07-2017 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3803 3821 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF14252 Domain of unknown function (DUF4347) 40 203 7.2E-59 T 06-07-2017 IPR025592 Domain of unknown function DUF4347 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5607 5621 59.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5984 6000 1.4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5333 5347 0.62 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4285 4301 0.079 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4757 4773 0.45 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4102 4119 1.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5349 5364 0.89 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5235 5250 1.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4147 4160 15.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4328 4342 32.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4700 4716 0.46 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4503 4518 4.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3907 3921 0.56 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4045 4062 0.044 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5752 5765 2.2 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4623 4637 18.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4684 4697 31.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3988 4005 0.018 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5454 5468 32.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5252 5267 0.23 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4085 4100 13.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5965 5982 0.84 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4344 4360 5.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5366 5383 0.21 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5469 5486 0.058 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4520 4536 0.094 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5888 5901 15.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4562 4576 46.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4269 4283 3.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3816 3832 0.51 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5811 5823 2.3 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4386 4400 1.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4577 4594 0.013 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3971 3987 0.18 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4639 4655 4.7 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4459 4470 38.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4401 4418 2.3 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4211 4226 43.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3797 3814 0.14 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4810 4824 1.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4031 4043 38.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3872 3887 0.5 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4228 4244 6.7 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4215 4233 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4281 4299 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 3733 3835 3.07E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 3873 3928 3.07E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 3974 4010 3.07E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4507 4525 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4623 4842 1.15E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 4323 4424 2.35E-11 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4626 4644 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3976 3994 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS00400 b39b992b95b3e780a9967058ae5b4d68 6064 SUPERFAMILY SSF51120 5270 5390 3.35E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS13300 f88ce7c5b4b3d3fe053073c055b95545 202 Gene3D G3DSA:2.160.10.10 76 174 1.1E-27 T 06-07-2017 APT55_RS13300 f88ce7c5b4b3d3fe053073c055b95545 202 SUPERFAMILY SSF51161 48 174 2.36E-34 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS13300 f88ce7c5b4b3d3fe053073c055b95545 202 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 131 159 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS13300 f88ce7c5b4b3d3fe053073c055b95545 202 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 156 4.7E-8 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS13300 f88ce7c5b4b3d3fe053073c055b95545 202 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 77 113 7.8E-6 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS08840 162c767c9d243685a7da5a69eb3f24c7 204 Gene3D G3DSA:3.40.50.1820 3 201 8.2E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS08840 162c767c9d243685a7da5a69eb3f24c7 204 SUPERFAMILY SSF53474 3 200 2.32E-16 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17015 1105216a02582e80df3d03a3fb4d7f5f 580 Pfam PF03109 ABC1 family 121 239 2.7E-37 T 06-07-2017 IPR004147 UbiB domain APT55_RS17015 1105216a02582e80df3d03a3fb4d7f5f 580 SUPERFAMILY SSF56112 201 320 1.5E-27 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS17015 1105216a02582e80df3d03a3fb4d7f5f 580 SUPERFAMILY SSF56112 103 166 1.5E-27 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 SMART SM00347 35 135 2.6E-21 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 SUPERFAMILY SSF46785 28 151 8.29E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 Pfam PF01047 MarR family 42 100 6.5E-14 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 5.9E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 5.9E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 5.9E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 5.9E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS02795 d2dfa5c9fe775c2609118524380b89e0 159 Gene3D G3DSA:1.10.10.10 28 151 3.4E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28780 93b2a322708cee29224910ba1a1ddbf7 242 Pfam PF05988 Bacterial protein of unknown function (DUF899) 8 227 1.1E-82 T 06-07-2017 IPR010296 Protein of unknown function DUF899, thioredoxin-like APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 Gene3D G3DSA:3.40.50.410 39 54 1.0E-27 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 Gene3D G3DSA:3.40.50.410 91 247 1.0E-27 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 SMART SM00327 41 247 4.5E-20 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 Pfam PF00092 von Willebrand factor type A domain 94 246 1.6E-18 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 SUPERFAMILY SSF53300 40 54 1.04E-29 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27510 7a211b0d98b1035223b8dbba473efdcf 467 SUPERFAMILY SSF53300 91 248 1.04E-29 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 Gene3D G3DSA:3.40.430.10 2 156 1.8E-44 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 PIRSF PIRSF000194 1 158 2.1E-45 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 PRINTS PR00070 Dihydrofolate reductase signature 93 107 1.5E-12 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 PRINTS PR00070 Dihydrofolate reductase signature 43 54 1.5E-12 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 PRINTS PR00070 Dihydrofolate reductase signature 16 26 1.5E-12 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 PRINTS PR00070 Dihydrofolate reductase signature 30 38 1.5E-12 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 16 38 - T 06-07-2017 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-113510|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-69205 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 SUPERFAMILY SSF53597 3 156 1.15E-42 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS04550 fd337ad6e2b6604cf1252302ee555983 160 Pfam PF00186 Dihydrofolate reductase 4 156 4.0E-43 T 06-07-2017 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT55_RS14165 0c9642c15d6fc4e1778b52aef9d31762 210 Pfam PF13847 Methyltransferase domain 74 177 1.0E-10 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS14165 0c9642c15d6fc4e1778b52aef9d31762 210 Gene3D G3DSA:3.40.50.150 55 192 4.1E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14165 0c9642c15d6fc4e1778b52aef9d31762 210 SUPERFAMILY SSF53335 28 205 4.55E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 Pfam PF00561 alpha/beta hydrolase fold 27 265 3.5E-24 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 6.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 6.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 6.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 222 236 6.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 SUPERFAMILY SSF53474 2 277 6.64E-56 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS16685 11638b0d7ae987db2be757ff4d85c909 284 Gene3D G3DSA:3.40.50.1820 2 277 2.6E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30320 31536cda0a64f64babdda526be577af2 129 SUPERFAMILY SSF161084 10 124 2.88E-17 T 06-07-2017 APT55_RS30320 31536cda0a64f64babdda526be577af2 129 Gene3D G3DSA:1.20.120.550 6 128 1.7E-9 T 06-07-2017 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain APT55_RS30320 31536cda0a64f64babdda526be577af2 129 Pfam PF01124 MAPEG family 8 128 2.7E-15 T 06-07-2017 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Pfam PF00107 Zinc-binding dehydrogenase 189 263 1.5E-13 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Gene3D G3DSA:3.40.50.720 303 344 2.5E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Gene3D G3DSA:3.40.50.720 183 257 2.5E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 143 8.2E-28 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 22 6.2E-8 T 06-07-2017 IPR027399 Alcohol dehydrogenase GroES-associated APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 Gene3D G3DSA:3.90.180.10 1 182 7.5E-53 T 06-07-2017 IPR011032 GroES-like APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 SUPERFAMILY SSF51735 156 268 4.6E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 SUPERFAMILY SSF51735 299 363 4.6E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 SMART SM00829 8 321 0.0045 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS17905 08ded5bc77bbd6107ab08fbf12fbcbe8 406 SUPERFAMILY SSF50129 1 196 6.09E-56 T 06-07-2017 IPR011032 GroES-like APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 SMART SM00487 535 724 1.7E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 Gene3D G3DSA:3.40.50.300 532 711 1.5E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 SMART SM00490 866 951 2.2E-20 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 SUPERFAMILY SSF52540 756 1009 2.01E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 Pfam PF00176 SNF2 family N-terminal domain 555 823 1.6E-63 T 06-07-2017 IPR000330 SNF2-related, N-terminal domain GO:0005524 APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 SUPERFAMILY SSF52540 527 753 5.02E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 Gene3D G3DSA:3.40.50.300 832 977 4.4E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 Pfam PF12419 SNF2 Helicase protein 356 492 3.5E-41 T 06-07-2017 IPR022138 Helicase SWF/SNF-related APT55_RS03770 99a4c8f360a07109974599d541e39c0c 1015 Pfam PF00271 Helicase conserved C-terminal domain 837 951 2.1E-16 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS01020 6a398500bf040de44c2cd5a882f822f0 62 Gene3D G3DSA:3.10.290.10 3 62 1.1E-26 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS01020 6a398500bf040de44c2cd5a882f822f0 62 SUPERFAMILY SSF55174 4 61 4.45E-19 T 06-07-2017 APT55_RS01020 6a398500bf040de44c2cd5a882f822f0 62 Pfam PF13275 S4 domain 3 62 6.8E-26 T 06-07-2017 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 SUPERFAMILY SSF51971 1 263 1.53E-52 T 06-07-2017 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 SUPERFAMILY SSF51971 328 363 1.53E-52 T 06-07-2017 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 72 3.2E-16 T 06-07-2017 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 Pfam PF03275 UDP-galactopyranose mutase 147 343 6.6E-79 T 06-07-2017 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 Gene3D G3DSA:3.40.50.720 318 359 2.0E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 Gene3D G3DSA:3.40.50.720 182 255 2.0E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 Gene3D G3DSA:3.40.50.720 1 80 2.0E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 SUPERFAMILY SSF54373 246 310 4.9E-19 T 06-07-2017 APT55_RS28000 1c0cb59ff72da9005c5adf387f12f49d 398 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 1 357 2.7E-122 T 06-07-2017 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 SUPERFAMILY SSF51905 166 403 6.91E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 SUPERFAMILY SSF51905 1 210 3.02E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 200 2.4E-27 T 06-07-2017 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 Gene3D G3DSA:3.50.50.60 241 278 1.1E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 Gene3D G3DSA:3.50.50.60 166 195 1.1E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 125 134 1.1E-5 T 06-07-2017 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.1E-5 T 06-07-2017 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 165 190 1.1E-5 T 06-07-2017 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 Gene3D G3DSA:3.50.50.60 368 405 1.6E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 Gene3D G3DSA:3.50.50.60 3 165 1.6E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15275 2eade0eae2808dbcee611f5c2d32f1e0 422 TIGRFAM TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family 5 400 1.1E-200 T 06-07-2017 IPR024000 Conserved hypothetical protein CHP04046, FMN-dependent APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 216 221 - T 06-07-2017 IPR020891 Uncharacterised protein family UPF0758, conserved site APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 Gene3D G3DSA:1.10.150.20 101 128 7.6E-4 T 06-07-2017 APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 TIGRFAM TIGR00608 radc: DNA repair protein RadC 48 267 2.2E-71 T 06-07-2017 IPR001405 RadC protein APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 Gene3D G3DSA:3.40.140.10 144 264 2.4E-40 T 06-07-2017 APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 SUPERFAMILY SSF102712 194 233 5.36E-5 T 06-07-2017 APT55_RS31125 1b78871624b4c5dc0b6151c66bcb5705 273 Pfam PF04002 RadC-like JAB domain 146 263 5.0E-37 T 06-07-2017 IPR025657 RadC-like JAB domain APT55_RS24765 9e95265f73019514d320e55320f189bf 181 ProSitePatterns PS00358 Ribosomal protein L5 signature. 58 74 - T 06-07-2017 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 Pfam PF00673 ribosomal L5P family C-terminus 85 178 1.7E-41 T 06-07-2017 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 PIRSF PIRSF002161 1 181 5.4E-65 T 06-07-2017 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 Pfam PF00281 Ribosomal protein L5 25 81 1.3E-25 T 06-07-2017 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 Gene3D G3DSA:3.30.1440.10 3 179 1.1E-74 T 06-07-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 SUPERFAMILY SSF55282 4 179 6.12E-77 T 06-07-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24765 9e95265f73019514d320e55320f189bf 181 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 45.569 T 06-07-2017 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Pfam PF13181 Tetratricopeptide repeat 341 371 0.012 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Gene3D G3DSA:1.25.40.10 90 251 1.1E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Gene3D G3DSA:1.25.40.10 261 433 1.2E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 103 136 2.8E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 259 292 13.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 299 332 11.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 179 212 0.16 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 340 373 2.1 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 219 252 0.015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SMART SM00028 380 413 42.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SUPERFAMILY SSF48452 90 175 2.14E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Pfam PF13424 Tetratricopeptide repeat 102 174 4.1E-10 T 06-07-2017 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Pfam PF13424 Tetratricopeptide repeat 260 326 1.2E-10 T 06-07-2017 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Pfam PF13424 Tetratricopeptide repeat 180 250 1.9E-11 T 06-07-2017 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SUPERFAMILY SSF48452 159 332 1.03E-27 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 SUPERFAMILY SSF48452 297 453 3.73E-16 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08585 be4824bc7478d425eec577f21d9ff29d 885 Pfam PF12770 CHAT domain 586 883 5.8E-74 T 06-07-2017 IPR024983 CHAT domain APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Gene3D G3DSA:3.10.20.30 401 463 5.3E-23 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SMART SM00954 246 356 1.8E-63 T 06-07-2017 IPR007685 RelA/SpoT GO:0015969 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Pfam PF13291 ACT domain 665 741 3.4E-15 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SUPERFAMILY SSF81271 392 460 3.05E-20 T 06-07-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SUPERFAMILY SSF55021 665 744 6.3E-13 T 06-07-2017 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Pfam PF04607 Region found in RelA / SpoT proteins 246 355 1.6E-37 T 06-07-2017 IPR007685 RelA/SpoT GO:0015969 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Pfam PF02824 TGS domain 401 460 1.5E-21 T 06-07-2017 IPR004095 TGS KEGG: 00970+6.1.1.3 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SMART SM00471 51 163 2.5E-11 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Gene3D G3DSA:3.30.70.260 666 738 1.1E-13 T 06-07-2017 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Pfam PF13328 HD domain 36 185 9.0E-52 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 36 741 5.5E-257 T 06-07-2017 IPR004811 RelA/SpoT family GO:0015969 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SUPERFAMILY SSF81301 205 378 1.62E-62 T 06-07-2017 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 Gene3D G3DSA:3.30.460.10 187 336 5.2E-48 T 06-07-2017 APT55_RS06945 f63853b490db4ee79ecd74212a6e962c 748 SUPERFAMILY SSF109604 15 201 2.04E-73 T 06-07-2017 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 SMART SM00387 178 301 1.7E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 SUPERFAMILY SSF55874 120 299 1.83E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 Gene3D G3DSA:3.30.565.10 131 301 2.4E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 260 278 1.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 229 243 1.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 247 257 1.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 298 1.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 Pfam PF00512 His Kinase A (phospho-acceptor) domain 41 132 5.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25470 7326ea3a7e2811b376f6b5b6049e024f 302 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 181 298 2.1E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SUPERFAMILY SSF158472 198 245 1.31E-9 T 06-07-2017 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 Pfam PF00672 HAMP domain 179 245 5.8E-18 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 311 1.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 Gene3D G3DSA:1.10.287.130 239 298 3.0E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 Gene3D G3DSA:3.30.565.10 299 465 2.9E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 1.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 1.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 1.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 1.5E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SMART SM00388 249 312 2.9E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 463 8.9E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SUPERFAMILY SSF55874 302 462 9.56E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SMART SM00304 196 248 4.0E-15 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SUPERFAMILY SSF47384 232 313 5.89E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13975 6a9507a865e276b0e94da21c45bec4f4 466 SMART SM00387 353 464 1.4E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 Hamap MF_01403 Probable phosphoketolase. 23 808 40.628 T 06-07-2017 IPR023962 Probable phosphoketolase APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 Pfam PF09364 XFP N-terminal domain 27 403 7.3E-195 T 06-07-2017 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 ProSitePatterns PS60003 Phosphoketolase signature 2. 175 193 - T 06-07-2017 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 SUPERFAMILY SSF52922 617 747 2.2E-6 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 SUPERFAMILY SSF52518 394 606 3.35E-25 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 Pfam PF09363 XFP C-terminal domain 605 806 4.5E-88 T 06-07-2017 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 Gene3D G3DSA:3.40.50.970 22 384 3.0E-21 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 418 594 1.6E-84 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 ProSitePatterns PS60002 Phosphoketolase signature 1. 162 168 - T 06-07-2017 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 PIRSF PIRSF017245 1 808 0.0 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS11785 a34477aaaafd962d5830fafae6f94eb5 808 SUPERFAMILY SSF52518 23 387 9.82E-77 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS12225 8c721a7902aa095f21aecb3b9aeadb3f 105 Pfam PF10792 Protein of unknown function (DUF2605) 7 100 1.3E-40 T 06-07-2017 IPR019728 Protein of unknown function DUF2605 APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 SMART SM00100 1 118 5.5E-5 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 SUPERFAMILY SSF51206 14 128 1.18E-24 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 Gene3D G3DSA:2.60.120.10 13 129 1.8E-22 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 Pfam PF00027 Cyclic nucleotide-binding domain 22 106 1.3E-16 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 SUPERFAMILY SSF46785 133 198 2.91E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27060 7453ce82f6d6a5a583de382df91c9868 199 Gene3D G3DSA:1.10.10.10 135 198 9.2E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16145 373edc48ba4b94e68e98c2e689611078 196 SUPERFAMILY SSF52980 3 190 3.86E-23 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16145 373edc48ba4b94e68e98c2e689611078 196 Pfam PF05685 Putative restriction endonuclease 12 188 1.7E-34 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS16145 373edc48ba4b94e68e98c2e689611078 196 Gene3D G3DSA:3.90.1570.10 8 191 1.4E-21 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 397 7.2E-169 T 06-07-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 Gene3D G3DSA:3.90.1260.10 176 399 3.4E-91 T 06-07-2017 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 399 53.943 T 06-07-2017 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 SUPERFAMILY SSF69864 174 400 1.7E-93 T 06-07-2017 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 119 130 - T 06-07-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 Gene3D G3DSA:3.40.50.620 5 175 5.3E-58 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 Pfam PF00764 Arginosuccinate synthase 8 394 3.0E-177 T 06-07-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 06-07-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS03440 44168e3dc55caecdd4ee8966bf0e4427 400 SUPERFAMILY SSF52402 5 206 1.57E-44 T 06-07-2017 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Gene3D G3DSA:1.10.287.110 2 101 1.4E-35 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SMART SM00271 3 60 6.4E-31 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SUPERFAMILY SSF46565 3 102 2.09E-34 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Pfam PF01556 DnaJ C terminal domain 124 341 3.2E-38 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Pfam PF00226 DnaJ domain 4 65 2.5E-26 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 PRINTS PR00625 DnaJ domain signature 60 79 1.1E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 PRINTS PR00625 DnaJ domain signature 6 24 1.1E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 PRINTS PR00625 DnaJ domain signature 40 60 1.1E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 PRINTS PR00625 DnaJ domain signature 24 39 1.1E-27 T 06-07-2017 IPR001623 DnaJ domain APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Gene3D G3DSA:2.10.230.10 141 206 8.2E-20 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SUPERFAMILY SSF49493 266 352 1.96E-20 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Pfam PF00684 DnaJ central domain 150 214 2.6E-14 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SUPERFAMILY SSF49493 117 141 1.96E-18 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SUPERFAMILY SSF49493 193 273 1.96E-18 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 SUPERFAMILY SSF57938 137 217 6.15E-19 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 378 39.424 T 06-07-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 357 2.1E-134 T 06-07-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Gene3D G3DSA:2.60.260.20 118 140 2.1E-19 T 06-07-2017 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Gene3D G3DSA:2.60.260.20 264 342 2.6E-18 T 06-07-2017 APT55_RS12490 19cd19c0e5f881f6747178d36ea457b7 378 Gene3D G3DSA:2.60.260.20 207 258 2.1E-19 T 06-07-2017 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 3.5E-200 T 06-07-2017 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 1.1E-103 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 72 85 - T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 328 1.1E-90 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 SUPERFAMILY SSF51569 3 329 4.69E-102 T 06-07-2017 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 Gene3D G3DSA:3.20.20.70 1 334 3.8E-103 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS22435 0b6d988f0c729038759c52a1db0c9606 360 PIRSF PIRSF001359 1 329 4.6E-80 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Gene3D G3DSA:3.40.50.2300 360 486 3.2E-31 T 06-07-2017 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 485 641 7.0E-18 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SMART SM00862 145 219 5.3E-18 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Pfam PF00990 Diguanylate cyclase, GGDEF domain 488 642 1.7E-21 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SUPERFAMILY SSF55073 493 641 3.69E-23 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SMART SM00267 477 649 3.9E-17 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SUPERFAMILY SSF52172 1 133 1.01E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SUPERFAMILY SSF52172 357 486 2.85E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Gene3D G3DSA:3.40.50.2300 672 776 8.1E-13 T 06-07-2017 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Gene3D G3DSA:3.30.70.270 490 645 1.8E-26 T 06-07-2017 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SUPERFAMILY SSF46894 124 220 1.47E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Gene3D G3DSA:3.40.50.2300 1 120 1.8E-32 T 06-07-2017 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Pfam PF00072 Response regulator receiver domain 363 474 1.2E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Pfam PF00072 Response regulator receiver domain 3 113 1.4E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Pfam PF00072 Response regulator receiver domain 670 770 2.2E-9 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Gene3D G3DSA:1.10.10.10 124 221 1.7E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SUPERFAMILY SSF52172 668 776 5.83E-14 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 8.3E-17 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SMART SM00448 1 112 1.9E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SMART SM00448 666 771 0.0027 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17255 ecc42257b65b1b6ef5a21c7d9a583336 779 SMART SM00448 361 474 3.0E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17970 ffa5ed0dfaf49e349504d2cb0a2d30d4 821 SUPERFAMILY SSF52129 24 230 5.13E-9 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS17970 ffa5ed0dfaf49e349504d2cb0a2d30d4 821 Pfam PF00656 Caspase domain 25 230 5.0E-18 T 06-07-2017 APT55_RS17970 ffa5ed0dfaf49e349504d2cb0a2d30d4 821 Gene3D G3DSA:3.40.50.1460 26 270 6.5E-12 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS05940 366a4e0b24f0725e31d641fe98cd46d7 121 Gene3D G3DSA:2.30.30.320 3 25 1.3E-6 T 06-07-2017 IPR023387 DUF1653-like domain APT55_RS05940 366a4e0b24f0725e31d641fe98cd46d7 121 Gene3D G3DSA:2.30.30.320 66 117 1.3E-6 T 06-07-2017 IPR023387 DUF1653-like domain APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 SUPERFAMILY SSF110296 50 345 9.16E-53 T 06-07-2017 APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 Pfam PF14870 Photosynthesis system II assembly factor YCF48 46 343 1.8E-136 T 06-07-2017 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 Hamap MF_01348 Ycf48-like protein [hcf136]. 16 345 47.438 T 06-07-2017 IPR016705 Photosynthesis system II assembly factor Ycf48/Hcf136 APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 Gene3D G3DSA:2.130.10.140 230 315 1.7E-23 T 06-07-2017 APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 Gene3D G3DSA:2.130.10.140 50 190 1.7E-23 T 06-07-2017 APT55_RS06755 6b1024e1bb509da13dc32f4f3fe79bc1 347 PIRSF PIRSF017875 14 347 8.0E-140 T 06-07-2017 IPR016705 Photosynthesis system II assembly factor Ycf48/Hcf136 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Pfam PF13181 Tetratricopeptide repeat 642 673 0.18 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SUPERFAMILY SSF48452 43 201 8.13E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Gene3D G3DSA:1.25.40.10 37 224 1.3E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Gene3D G3DSA:1.25.40.10 225 451 1.8E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Gene3D G3DSA:1.25.40.10 468 733 2.3E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Pfam PF13432 Tetratricopeptide repeat 504 550 6.9E-6 T 06-07-2017 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Pfam PF13432 Tetratricopeptide repeat 45 106 1.5E-7 T 06-07-2017 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Pfam PF13432 Tetratricopeptide repeat 680 734 2.2E-6 T 06-07-2017 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 Pfam PF13432 Tetratricopeptide repeat 148 201 3.7E-4 T 06-07-2017 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SUPERFAMILY SSF48452 49 497 2.47E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SUPERFAMILY SSF48452 467 712 4.09E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 73 106 0.24 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 39 72 200.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 142 175 0.002 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 498 531 64.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 640 673 3.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00055 325afb7f7572d56d39f79064436eddad 772 SMART SM00028 674 707 0.18 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS29290 52623d86ee1078a92d1c3e2f441da031 125 Gene3D G3DSA:1.10.150.320 63 104 5.1E-13 T 06-07-2017 APT55_RS29290 52623d86ee1078a92d1c3e2f441da031 125 SUPERFAMILY SSF81585 53 106 5.62E-13 T 06-07-2017 APT55_RS29290 52623d86ee1078a92d1c3e2f441da031 125 Pfam PF12836 Helix-hairpin-helix motif 66 104 1.7E-11 T 06-07-2017 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PIRSF PIRSF036480 3 284 2.2E-117 T 06-07-2017 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 Gene3D G3DSA:3.40.50.170 89 280 1.8E-59 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 7 283 6.2E-130 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 112 139 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 90 112 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 40 52 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 8 34 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 235 257 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 257 282 2.1E-60 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 SUPERFAMILY SSF55021 5 86 7.91E-12 T 06-07-2017 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 Pfam PF01842 ACT domain 7 72 8.3E-8 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 Gene3D G3DSA:3.30.70.260 2 83 2.3E-14 T 06-07-2017 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 SUPERFAMILY SSF53328 90 283 1.2E-60 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 Pfam PF00551 Formyl transferase 90 265 2.6E-39 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS21925 05f8225bf73c1d210894362afda4d393 284 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 3 283 48.139 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS02970 1688ec5f1bc512844ee4edbc186330a7 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 282 2.1E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02970 1688ec5f1bc512844ee4edbc186330a7 287 Gene3D G3DSA:1.10.3720.10 27 283 1.8E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02970 1688ec5f1bc512844ee4edbc186330a7 287 SUPERFAMILY SSF161098 33 273 9.68E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02970 1688ec5f1bc512844ee4edbc186330a7 287 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 21 279 3.8E-115 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT55_RS02970 1688ec5f1bc512844ee4edbc186330a7 287 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 25 281 2.6E-118 T 06-07-2017 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Gene3D G3DSA:3.30.70.1450 264 339 4.7E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Pfam PF02254 TrkA-N domain 111 226 6.8E-32 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Gene3D G3DSA:3.40.50.720 104 240 1.5E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Pfam PF07885 Ion channel 14 87 6.9E-11 T 06-07-2017 IPR013099 Potassium channel domain APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Pfam PF02080 TrkA-C domain 269 339 5.4E-9 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 SUPERFAMILY SSF51735 107 251 6.79E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 SUPERFAMILY SSF81324 7 130 4.06E-17 T 06-07-2017 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 Gene3D G3DSA:1.10.287.70 8 91 1.0E-10 T 06-07-2017 APT55_RS18250 a98aab772a1da8b23772f1186530a222 355 SUPERFAMILY SSF116726 256 339 3.14E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS24195 0709e9eeb55af33e7ece44f1042e36e2 396 Gene3D G3DSA:3.40.630.30 186 339 2.6E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS24195 0709e9eeb55af33e7ece44f1042e36e2 396 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 17 389 1.5E-144 T 06-07-2017 IPR007434 Peptidogalycan biosysnthesis/recognition APT55_RS24195 0709e9eeb55af33e7ece44f1042e36e2 396 SUPERFAMILY SSF55729 187 361 5.87E-37 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS31150 a30739f7043b6c14de53ca3f8ee1438f 666 SUPERFAMILY SSF52540 183 589 4.42E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31150 a30739f7043b6c14de53ca3f8ee1438f 666 Gene3D G3DSA:3.40.50.300 169 264 2.2E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31150 a30739f7043b6c14de53ca3f8ee1438f 666 Gene3D G3DSA:3.40.50.300 388 556 2.2E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31150 a30739f7043b6c14de53ca3f8ee1438f 666 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 195 552 6.5E-38 T 06-07-2017 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 SUPERFAMILY SSF54211 102 194 1.23E-33 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 SUPERFAMILY SSF54211 17 101 7.46E-32 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 76 89 - T 06-07-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 46 189 5.9E-62 T 06-07-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 171 183 - T 06-07-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 Gene3D G3DSA:3.30.230.40 105 210 6.5E-31 T 06-07-2017 APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 Gene3D G3DSA:3.30.230.40 17 103 2.2E-36 T 06-07-2017 APT55_RS13055 97df13fc66404521ad5ab7f11103a87e 210 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 17 210 42.155 T 06-07-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 Gene3D G3DSA:2.30.42.10 129 205 1.3E-27 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 Gene3D G3DSA:3.90.226.10 206 426 2.5E-64 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 Pfam PF03572 Peptidase family S41 224 385 4.7E-56 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 SMART SM00245 196 386 1.3E-84 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 SUPERFAMILY SSF50156 98 198 7.49E-23 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 SUPERFAMILY SSF52096 41 115 9.28E-74 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 SUPERFAMILY SSF52096 197 388 9.28E-74 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 72 394 7.7E-120 T 06-07-2017 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 Pfam PF13180 PDZ domain 124 197 3.6E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 Gene3D G3DSA:3.30.750.44 41 128 2.3E-34 T 06-07-2017 APT55_RS11335 749723bcb3fa4231950f5b7d62c57e7c 439 SMART SM00228 122 195 9.6E-17 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 PIRSF PIRSF000183 1 359 2.9E-159 T 06-07-2017 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 06-07-2017 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 Gene3D G3DSA:3.40.50.1770 197 314 1.1E-22 T 06-07-2017 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 360 5.4E-174 T 06-07-2017 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 SMART SM01002 148 296 1.7E-87 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 SUPERFAMILY SSF51735 136 302 2.63E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 Gene3D G3DSA:3.50.50.60 176 196 3.9E-8 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 Gene3D G3DSA:3.40.50.1770 1 175 4.7E-58 T 06-07-2017 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 SMART SM01003 4 136 2.5E-70 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 350 6.5E-86 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 4.1E-44 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 SUPERFAMILY SSF52283 1 136 2.55E-63 T 06-07-2017 APT55_RS12195 59958d7ab7dee06dc39eac892af76ecc 362 SUPERFAMILY SSF52283 304 357 2.55E-63 T 06-07-2017 APT55_RS07875 e83096771793c0b4587eecaa6fdad0c6 456 Pfam PF01933 Uncharacterised protein family UPF0052 139 424 5.1E-111 T 06-07-2017 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 APT55_RS07875 e83096771793c0b4587eecaa6fdad0c6 456 Gene3D G3DSA:3.40.50.10680 209 452 1.0E-61 T 06-07-2017 APT55_RS07875 e83096771793c0b4587eecaa6fdad0c6 456 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 139 447 9.1E-117 T 06-07-2017 IPR010119 Gluconeogenesis factor APT55_RS07875 e83096771793c0b4587eecaa6fdad0c6 456 Hamap MF_00973 Gluconeogenesis factor. 135 451 36.962 T 06-07-2017 IPR010119 Gluconeogenesis factor APT55_RS07875 e83096771793c0b4587eecaa6fdad0c6 456 SUPERFAMILY SSF142338 136 446 9.68E-106 T 06-07-2017 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Gene3D G3DSA:1.10.287.130 141 220 7.4E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SUPERFAMILY SSF47384 135 223 8.44E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SMART SM00388 149 224 6.8E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 336 9.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 359 9.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 378 9.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 322 9.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SUPERFAMILY SSF55874 214 379 3.27E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Gene3D G3DSA:3.40.30.10 16 103 3.8E-32 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Hamap MF_01837 Adaptive-response sensory-kinase SasA [sasA]. 11 381 42.797 T 06-07-2017 IPR023527 Adaptive-response sensory-kinase SasA GO:0016772 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Pfam PF00512 His Kinase A (phospho-acceptor) domain 150 221 1.9E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SUPERFAMILY SSF52833 10 104 3.75E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SMART SM01248 20 101 1.4E-32 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 271 378 1.7E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Gene3D G3DSA:3.30.565.10 226 379 3.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 SMART SM00387 270 381 1.9E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS16465 e0d99b48ead3f008059f4d882ad2d3f1 382 Pfam PF07689 KaiB domain 20 101 6.9E-29 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS20535 5ddc7e6a0faf549312ef4702645c9b84 547 Pfam PF00395 S-layer homology domain 46 88 2.1E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS20535 5ddc7e6a0faf549312ef4702645c9b84 547 SUPERFAMILY SSF56935 275 460 2.26E-5 T 06-07-2017 APT55_RS20535 5ddc7e6a0faf549312ef4702645c9b84 547 Pfam PF04966 Carbohydrate-selective porin, OprB family 112 547 8.7E-81 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 Gene3D G3DSA:3.60.15.10 30 278 2.6E-51 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 36 278 34.548 T 06-07-2017 IPR022877 Protein of unknown funcion UPF0173 APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 Pfam PF13483 Beta-lactamase superfamily domain 37 240 4.8E-23 T 06-07-2017 APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 SMART SM00849 42 240 1.2E-11 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 SUPERFAMILY SSF56281 133 266 1.17E-29 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS07655 0700ac157531a7c31033a6d46719b30c 278 SUPERFAMILY SSF56281 37 105 1.17E-29 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 124 210 20.119 T 06-07-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 13 117 30.997 T 06-07-2017 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 143 213 6.2E-15 T 06-07-2017 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Gene3D G3DSA:1.10.287.1080 155 209 1.0E-7 T 06-07-2017 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 SUPERFAMILY SSF101386 125 213 9.72E-26 T 06-07-2017 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 62 113 4.0E-23 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 15 214 36.001 T 06-07-2017 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 39 113 2.5E-35 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 127 210 2.2E-30 T 06-07-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APT55_RS00220 5035f5dbb3022cb6e9ceb0d3cd9e4c79 214 SUPERFAMILY SSF141734 13 116 2.09E-47 T 06-07-2017 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 21 508 89.638 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 SUPERFAMILY SSF51735 7 209 8.46E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 Gene3D G3DSA:3.40.50.720 20 205 2.0E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 25 206 1.5E-63 T 06-07-2017 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 21 508 2.1E-210 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 196 202 - T 06-07-2017 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 256 272 3.1E-50 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 238 255 3.1E-50 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 186 214 3.1E-50 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 162 175 3.1E-50 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 347 373 3.1E-50 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 Gene3D G3DSA:3.30.360.10 206 507 1.2E-125 T 06-07-2017 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 208 507 3.5E-121 T 06-07-2017 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 SUPERFAMILY SSF55347 196 507 4.58E-117 T 06-07-2017 APT55_RS20210 4fcb3feee7153d325b6d875bcebf372d 509 PIRSF PIRSF000110 10 509 7.0E-188 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00086 91 132 2.0E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00086 336 378 0.052 T 06-07-2017 IPR001610 PAC motif APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF08448 PAS fold 18 134 9.6E-9 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF08448 PAS fold 143 252 3.3E-14 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF55874 460 632 1.05E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:3.30.450.20 134 246 3.6E-19 T 06-07-2017 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:3.40.50.2300 650 784 2.4E-35 T 06-07-2017 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:3.30.450.20 247 392 7.5E-32 T 06-07-2017 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00388 405 471 4.4E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 568 1.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 627 1.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 607 1.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF00072 Response regulator receiver domain 653 766 4.3E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF55785 247 376 2.09E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF52172 649 770 8.11E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00448 651 766 4.0E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:3.30.565.10 472 634 2.7E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF08447 PAS fold 284 372 3.3E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF00512 His Kinase A (phospho-acceptor) domain 406 470 8.8E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00387 517 630 2.5E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 259 384 5.6E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 92 138 2.5E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 257 3.3E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF47384 389 472 1.02E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:3.30.450.20 17 130 5.3E-13 T 06-07-2017 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Gene3D G3DSA:1.10.287.130 398 467 3.1E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00091 137 203 4.1E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00091 12 82 240.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SMART SM00091 262 330 3.6 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 628 1.8E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF55785 128 229 4.01E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS30865 8514f5ec6262fdfaf58ee163c6a44a25 789 SUPERFAMILY SSF55785 25 140 4.01E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 PIRSF PIRSF000037 1 44 6.1E-28 T 06-07-2017 IPR006241 Photosystem II cytochrome b559, beta subunit GO:0009523|GO:0009539|GO:0009767|GO:0015979|GO:0016021|GO:0019684|GO:0020037 APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 ProSitePatterns PS00537 Cytochrome b559 subunits heme-binding site signature. 14 28 - T 06-07-2017 IPR006216 Photosystem II cytochrome b559, conserved site GO:0009523|GO:0009539|GO:0009767|GO:0015979|GO:0016021|GO:0019684|GO:0020037 APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 Pfam PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits 6 34 1.4E-16 T 06-07-2017 IPR013081 Photosystem II cytochrome b559, N-terminal GO:0015979 APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 SUPERFAMILY SSF161045 11 44 5.1E-17 T 06-07-2017 APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 Hamap MF_00643 Cytochrome b559 subunit beta [psbF]. 6 44 19.879 T 06-07-2017 IPR006241 Photosystem II cytochrome b559, beta subunit GO:0009523|GO:0009539|GO:0009767|GO:0015979|GO:0016021|GO:0019684|GO:0020037 APT55_RS06765 0ecc0b44f364d77841453b246afcf2a0 44 TIGRFAM TIGR01333 cyt_b559_beta: cytochrome b559, beta subunit 4 44 7.5E-26 T 06-07-2017 IPR006241 Photosystem II cytochrome b559, beta subunit GO:0009523|GO:0009539|GO:0009767|GO:0015979|GO:0016021|GO:0019684|GO:0020037 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 SUPERFAMILY SSF53254 1 217 2.36E-58 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 SMART SM00855 4 166 1.1E-20 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 SMART SM00855 227 383 7.5E-21 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 228 414 7.4E-58 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 200 2.4E-48 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 SUPERFAMILY SSF53254 227 434 1.7E-61 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 Gene3D G3DSA:3.40.50.1240 1 217 1.0E-63 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 Gene3D G3DSA:3.40.50.1240 226 436 1.2E-68 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 06-07-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 APT55_RS03225 9dc9dc0d81d4d61f3cf0b92785ebbe59 441 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 230 239 - T 06-07-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 Pfam PF04055 Radical SAM superfamily 11 185 7.1E-22 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 Gene3D G3DSA:3.80.30.20 7 247 1.3E-37 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 8 342 9.5E-92 T 06-07-2017 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 Pfam PF06969 HemN C-terminal domain 306 367 1.7E-10 T 06-07-2017 IPR010723 HemN, C-terminal APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 SMART SM00729 6 231 5.4E-61 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS26650 02b55c783a3e068ba5818864899f03ef 392 SUPERFAMILY SSF102114 6 383 4.05E-113 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 312 2.1E-118 T 06-07-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 Gene3D G3DSA:3.50.50.60 114 305 1.8E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 Gene3D G3DSA:3.40.30.10 358 452 4.2E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 SUPERFAMILY SSF52833 354 453 6.02E-23 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 Gene3D G3DSA:3.50.50.60 7 113 9.0E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 150 174 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 45 60 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 111 119 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 202 218 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 133 145 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 241 262 1.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 2.8E-39 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 2.8E-39 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 2.8E-39 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.8E-39 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 2.8E-39 T 06-07-2017 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 140 162 - T 06-07-2017 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 Pfam PF00085 Thioredoxin 364 451 3.2E-18 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 SUPERFAMILY SSF51905 7 312 1.46E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12610 b52084bdd7676aa5591a72b71d524762 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 1.2E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14965 169d97b85e8a974b8567c4255cf500a8 315 SUPERFAMILY SSF53335 16 158 7.15E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14965 169d97b85e8a974b8567c4255cf500a8 315 Pfam PF08241 Methyltransferase domain 34 128 3.8E-22 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS14965 169d97b85e8a974b8567c4255cf500a8 315 Gene3D G3DSA:3.40.50.150 20 158 5.3E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 Pfam PF03948 Ribosomal protein L9, C-terminal domain 68 151 1.1E-22 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 Gene3D G3DSA:3.10.430.100 65 151 1.7E-25 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 Gene3D G3DSA:3.40.5.10 6 56 1.8E-21 T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 SUPERFAMILY SSF55658 5 60 2.62E-16 T 06-07-2017 IPR009027 Ribosomal protein L9/RNase H1, N-terminal APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 5 152 23.545 T 06-07-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 TIGRFAM TIGR00158 L9: ribosomal protein bL9 6 151 2.7E-40 T 06-07-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 SUPERFAMILY SSF55653 61 151 1.12E-20 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 Pfam PF01281 Ribosomal protein L9, N-terminal domain 6 50 1.3E-19 T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01715 11d26dcdc4db928ba8697db587e6be19 152 ProSitePatterns PS00651 Ribosomal protein L9 signature. 17 44 - T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Pfam PF00990 Diguanylate cyclase, GGDEF domain 144 292 1.1E-29 T 06-07-2017 IPR000160 GGDEF domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SMART SM00448 2 115 1.3E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Pfam PF00072 Response regulator receiver domain 4 115 9.0E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Gene3D G3DSA:3.40.50.2300 2 125 3.4E-36 T 06-07-2017 APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SUPERFAMILY SSF141868 323 569 5.75E-91 T 06-07-2017 IPR001633 EAL domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SUPERFAMILY SSF55073 149 308 7.3E-31 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SMART SM00267 133 306 8.4E-32 T 06-07-2017 IPR000160 GGDEF domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SMART SM00052 316 562 2.0E-118 T 06-07-2017 IPR001633 EAL domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 142 304 1.0E-17 T 06-07-2017 IPR000160 GGDEF domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 SUPERFAMILY SSF52172 1 148 1.99E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Gene3D G3DSA:3.20.20.450 320 568 1.5E-99 T 06-07-2017 IPR001633 EAL domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Pfam PF00563 EAL domain 323 557 8.7E-73 T 06-07-2017 IPR001633 EAL domain APT55_RS05015 61e00b83e06333533df7faacc0074eac 578 Gene3D G3DSA:3.30.70.270 146 311 6.3E-36 T 06-07-2017 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 539 4.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 514 4.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 4.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 558 4.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SUPERFAMILY SSF55874 378 562 2.88E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SUPERFAMILY SSF52172 584 699 5.12E-19 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SMART SM00448 585 695 7.3E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Gene3D G3DSA:3.30.565.10 376 408 9.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Gene3D G3DSA:3.30.565.10 442 559 9.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Gene3D G3DSA:3.40.50.2300 584 698 6.9E-19 T 06-07-2017 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Gene3D G3DSA:1.10.287.130 315 375 1.4E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SMART SM00387 449 561 2.2E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 450 560 6.5E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Pfam PF00072 Response regulator receiver domain 587 695 7.6E-9 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SMART SM00388 321 389 3.4E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 SUPERFAMILY SSF47384 304 390 7.06E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07450 ac546a8c9e85f17d8b4faf960026e2c2 971 Pfam PF00512 His Kinase A (phospho-acceptor) domain 322 389 4.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04260 b39ca71b53c7016fb264d0fd3ef39985 199 Pfam PF10138 vWA found in TerF C terminus 7 188 5.4E-9 T 06-07-2017 IPR019303 vWA found in TerF C terminus APT55_RS04260 b39ca71b53c7016fb264d0fd3ef39985 199 SUPERFAMILY SSF53300 2 166 4.96E-21 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS04260 b39ca71b53c7016fb264d0fd3ef39985 199 SMART SM00327 3 193 5.0E-18 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS04260 b39ca71b53c7016fb264d0fd3ef39985 199 Gene3D G3DSA:3.40.50.410 3 157 2.8E-12 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 35 53 - T 06-07-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 SUPERFAMILY SSF53686 1 310 7.73E-101 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 7 294 1.6E-63 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 TIGRFAM TIGR01139 cysK: cysteine synthase A 7 308 6.9E-141 T 06-07-2017 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 Gene3D G3DSA:3.40.50.1100 40 137 1.9E-40 T 06-07-2017 APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 Gene3D G3DSA:3.40.50.1100 138 310 5.2E-77 T 06-07-2017 APT55_RS03045 af9f4e56a505d2af5d7c2af85a21bca2 330 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 308 9.1E-135 T 06-07-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Pfam PF00550 Phosphopantetheine attachment site 1008 1070 8.5E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Gene3D G3DSA:3.40.50.980 499 654 5.3E-57 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 SUPERFAMILY SSF52777 46 222 7.45E-49 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Gene3D G3DSA:2.30.38.10 809 890 1.2E-26 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 SMART SM00823 Phosphopantetheine attachment site 1006 1075 2.9E-6 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Pfam PF00668 Condensation domain 42 341 4.9E-75 T 06-07-2017 IPR001242 Condensation domain APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1030 1045 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Pfam PF13193 AMP-binding enzyme C-terminal domain 908 981 1.9E-11 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 SUPERFAMILY SSF52777 229 493 4.89E-67 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Gene3D G3DSA:3.30.300.30 895 1010 9.6E-44 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Gene3D G3DSA:3.40.50.980 655 808 9.5E-38 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Pfam PF00501 AMP-binding enzyme 506 900 4.5E-101 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 527 923 4.7E-132 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 SUPERFAMILY SSF56801 464 1019 2.88E-165 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Pfam PF13745 HxxPF-repeated domain 363 453 3.0E-32 T 06-07-2017 APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 SUPERFAMILY SSF47336 1000 1069 8.51E-21 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 ProSitePatterns PS00455 Putative AMP-binding domain signature. 645 656 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS09620 2a397b5a6a916071bb756e9e56ead26d 1099 Gene3D G3DSA:1.10.1200.10 1011 1075 7.6E-28 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS29815 e325c666cf4a03abff601f1f4b2601b8 175 Gene3D G3DSA:3.40.50.300 106 161 5.7E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29815 e325c666cf4a03abff601f1f4b2601b8 175 SUPERFAMILY SSF52540 90 162 6.52E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29815 e325c666cf4a03abff601f1f4b2601b8 175 Pfam PF13175 AAA ATPase domain 113 159 6.2E-11 T 06-07-2017 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 Pfam PF00248 Aldo/keto reductase family 26 190 1.0E-20 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 PRINTS PR00069 Aldo-keto reductase signature 90 108 7.8E-6 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 PRINTS PR00069 Aldo-keto reductase signature 37 61 7.8E-6 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 PRINTS PR00069 Aldo-keto reductase signature 127 144 7.8E-6 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 Gene3D G3DSA:1.10.1060.10 261 355 4.8E-7 T 06-07-2017 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 327 338 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 Pfam PF13534 4Fe-4S dicluster domain 270 341 5.8E-8 T 06-07-2017 APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 Gene3D G3DSA:3.20.20.100 3 260 1.3E-39 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS07565 30aafe223f299f0b8113f06a91951818 365 SUPERFAMILY SSF51430 4 302 1.96E-54 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 SUPERFAMILY SSF49879 6 107 1.3E-30 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 SUPERFAMILY SSF55073 127 312 1.73E-42 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 Gene3D G3DSA:3.30.70.1230 130 310 5.1E-28 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 SMART SM00044 83 294 8.2E-4 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 SMART SM00240 28 79 7.6E-17 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 Pfam PF00498 FHA domain 29 94 4.7E-23 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 Gene3D G3DSA:2.60.200.20 6 108 1.6E-31 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS22540 eede8417fc1aacc7a50c594b747fb07a 329 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 130 304 4.4E-17 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 Pfam PF08448 PAS fold 424 531 2.4E-14 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 559 722 1.4E-45 T 06-07-2017 IPR000160 GGDEF domain APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 Pfam PF00990 Diguanylate cyclase, GGDEF domain 562 719 8.6E-53 T 06-07-2017 IPR000160 GGDEF domain APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 SMART SM01080 45 350 1.3E-54 T 06-07-2017 IPR007890 CHASE2 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 Gene3D G3DSA:3.30.450.20 408 528 1.4E-21 T 06-07-2017 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 Gene3D G3DSA:3.30.70.270 563 724 2.0E-59 T 06-07-2017 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 414 537 1.1E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 SMART SM00267 551 723 5.4E-69 T 06-07-2017 IPR000160 GGDEF domain APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 SUPERFAMILY SSF55073 567 723 3.81E-53 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 Pfam PF05226 CHASE2 domain 36 347 2.7E-56 T 06-07-2017 IPR007890 CHASE2 APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 SUPERFAMILY SSF55785 406 528 9.25E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS01460 6359be716373a9271b2fd1db5bba374f 732 SMART SM00091 417 483 1.1E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS02315 22a8eeb15e433534fba7c9f583f8b168 175 Gene3D G3DSA:3.40.50.1000 27 150 5.9E-21 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02315 22a8eeb15e433534fba7c9f583f8b168 175 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 32 141 3.4E-12 T 06-07-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APT55_RS02315 22a8eeb15e433534fba7c9f583f8b168 175 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 5 171 7.2E-49 T 06-07-2017 IPR010021 HAD-superfamily phosphatase, YqeG-like APT55_RS02315 22a8eeb15e433534fba7c9f583f8b168 175 SUPERFAMILY SSF56784 20 151 1.92E-21 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02315 22a8eeb15e433534fba7c9f583f8b168 175 Pfam PF13242 HAD-hyrolase-like 94 140 6.9E-12 T 06-07-2017 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.30.450.40 137 308 3.2E-24 T 06-07-2017 IPR029016 GAF domain-like APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF01590 GAF domain 162 294 3.6E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF01590 GAF domain 325 469 7.6E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 604 708 5.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00065 325 479 1.2E-28 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00065 160 304 2.3E-23 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF00512 His Kinase A (phospho-acceptor) domain 492 555 1.4E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.30.450.40 314 476 2.1E-34 T 06-07-2017 IPR029016 GAF domain-like APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF55781 139 304 9.62E-27 T 06-07-2017 IPR029016 GAF domain-like APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF52172 759 897 2.7E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 924 1101 1.7E-29 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.40.50.2300 757 885 1.2E-39 T 06-07-2017 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.40.50.2300 10 136 1.1E-27 T 06-07-2017 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF47384 474 556 3.53E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF00072 Response regulator receiver domain 12 121 7.1E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Pfam PF00072 Response regulator receiver domain 762 873 1.2E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF55874 544 708 4.19E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF55073 920 1105 1.88E-54 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00387 600 712 5.4E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF52172 8 143 2.42E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00448 9 121 4.2E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00448 760 873 1.5E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.30.565.10 543 709 8.5E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SUPERFAMILY SSF55781 310 485 1.26E-26 T 06-07-2017 IPR029016 GAF domain-like APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 690 2.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 651 2.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 665 2.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 696 709 2.7E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00388 491 555 3.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:3.30.70.1230 925 1104 8.4E-45 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 Gene3D G3DSA:1.10.287.130 482 542 6.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06535 1087b68cd8fca8e188a0f7ab1c4d5ff8 1115 SMART SM00044 889 1089 3.2E-19 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS08900 4177f626fd284921c08e90950ded1cff 306 SUPERFAMILY SSF52266 205 306 3.5E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS08900 4177f626fd284921c08e90950ded1cff 306 SUPERFAMILY SSF52266 76 158 3.5E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS08900 4177f626fd284921c08e90950ded1cff 306 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 80 297 2.1E-13 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS08900 4177f626fd284921c08e90950ded1cff 306 Gene3D G3DSA:3.40.50.1110 76 161 2.6E-18 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS08900 4177f626fd284921c08e90950ded1cff 306 Gene3D G3DSA:3.40.50.1110 208 306 2.6E-18 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 Gene3D G3DSA:1.20.58.220 14 118 1.2E-30 T 06-07-2017 APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 Gene3D G3DSA:1.20.58.220 129 222 8.8E-20 T 06-07-2017 APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 PIRSF PIRSF003107 10 223 1.3E-51 T 06-07-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 SUPERFAMILY SSF109755 16 223 2.2E-55 T 06-07-2017 APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 16 222 1.4E-51 T 06-07-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 Pfam PF01895 PhoU domain 29 113 9.2E-22 T 06-07-2017 IPR026022 PhoU domain APT55_RS16795 d0a0e12e0e9daff5f778c20c4c5a122a 223 Pfam PF01895 PhoU domain 131 215 1.3E-13 T 06-07-2017 IPR026022 PhoU domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 SMART SM00220 13 265 2.0E-47 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Gene3D G3DSA:1.25.40.20 521 577 6.8E-23 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Gene3D G3DSA:1.25.40.20 319 462 6.8E-23 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 SUPERFAMILY SSF48403 521 576 1.23E-21 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 SUPERFAMILY SSF48403 319 462 1.23E-21 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Pfam PF12796 Ankyrin repeats (3 copies) 319 400 2.6E-7 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Gene3D G3DSA:1.10.510.10 113 265 5.5E-33 T 06-07-2017 APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Gene3D G3DSA:3.30.200.20 4 112 2.9E-26 T 06-07-2017 APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 Pfam PF00069 Protein kinase domain 13 259 1.4E-43 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 19 42 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS24360 08dfe3d833350bd733e216caa465ded5 654 SUPERFAMILY SSF56112 10 266 1.27E-62 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS20970 339e53026c38ef65ccac5afca45eceb1 267 Pfam PF03473 MOSC domain 130 245 2.4E-6 T 06-07-2017 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 APT55_RS20970 339e53026c38ef65ccac5afca45eceb1 267 Pfam PF03476 MOSC N-terminal beta barrel domain 9 98 1.3E-14 T 06-07-2017 IPR005303 MOSC, N-terminal beta barrel APT55_RS20970 339e53026c38ef65ccac5afca45eceb1 267 SUPERFAMILY SSF141673 11 112 6.28E-12 T 06-07-2017 APT55_RS10155 fc50b8821c2b4aeca4c19756438c3207 173 ProSitePatterns PS00018 EF-hand calcium-binding domain. 149 161 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site APT55_RS10155 fc50b8821c2b4aeca4c19756438c3207 173 Pfam PF06078 Bacterial protein of unknown function (DUF937) 15 126 4.2E-9 T 06-07-2017 IPR009282 Protein of unknown function DUF937 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 Pfam PF12833 Helix-turn-helix domain 236 314 2.5E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 SMART SM00342 230 313 3.1E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 Gene3D G3DSA:1.10.10.60 214 268 1.9E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 SUPERFAMILY SSF46689 267 316 3.14E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 SUPERFAMILY SSF46689 214 264 7.08E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 Gene3D G3DSA:1.10.10.60 269 315 3.8E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 309 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 313 2.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS25075 54c40a964a5b6bbe5a42ab54866e491d 323 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 297 2.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SUPERFAMILY SSF52540 111 366 1.21E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00931 NB-ARC domain 121 221 6.1E-11 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1074 1088 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Gene3D G3DSA:2.130.10.10 557 792 6.2E-96 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Gene3D G3DSA:2.130.10.10 793 1014 1.4E-98 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1118 1132 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SUPERFAMILY SSF50978 718 1002 4.89E-110 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 757 796 4.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 631 670 3.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 838 877 1.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 589 628 1.2E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 880 919 4.0E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 715 754 5.7E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 547 586 0.016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 1048 1087 4.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 799 835 5.3E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 964 1003 1.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 922 961 6.5E-14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 1006 1045 4.6E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 673 712 5.6E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SMART SM00320 1097 1131 0.24 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SUPERFAMILY SSF50978 936 1143 6.23E-64 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Gene3D G3DSA:3.40.50.300 109 229 1.3E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00320 G protein beta WD-40 repeat signature 1118 1132 5.0E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00320 G protein beta WD-40 repeat signature 783 797 5.0E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00320 G protein beta WD-40 repeat signature 822 836 5.0E-9 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 783 797 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 822 836 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00364 Disease resistance protein signature 311 325 4.2E-9 T 06-07-2017 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00364 Disease resistance protein signature 208 222 4.2E-9 T 06-07-2017 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 PRINTS PR00364 Disease resistance protein signature 138 153 4.2E-9 T 06-07-2017 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 1102 1131 0.011 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 632 667 3.2E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 1008 1045 3.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 758 796 1.2E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 716 753 2.8E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 800 835 1.1E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 561 585 0.14 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 839 877 6.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 590 627 3.6E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 965 1003 1.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 1049 1086 6.1E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 674 711 1.3E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 881 919 3.4E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Pfam PF00400 WD domain, G-beta repeat 923 961 2.0E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 Gene3D G3DSA:2.130.10.10 1015 1142 5.5E-44 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 SUPERFAMILY SSF50978 557 769 1.5E-70 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS28885 72b31428e17bd51a1f93caac3023481b 1173 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1032 1046 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS05700 5c2d5312f6d64b33b7e76f2d099fba54 301 Gene3D G3DSA:3.40.1090.10 3 290 1.5E-73 T 06-07-2017 APT55_RS05700 5c2d5312f6d64b33b7e76f2d099fba54 301 SUPERFAMILY SSF52151 4 269 1.67E-52 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS05700 5c2d5312f6d64b33b7e76f2d099fba54 301 Pfam PF01734 Patatin-like phospholipase 6 183 2.7E-29 T 06-07-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 Gene3D G3DSA:3.40.50.1580 3 252 1.7E-90 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 4 272 42.885 T 06-07-2017 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 5 248 1.8E-98 T 06-07-2017 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 52 92 - T 06-07-2017 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 Pfam PF01048 Phosphorylase superfamily 5 247 8.1E-43 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT55_RS01660 cf6d1c94bff0f5f789b7fd6ef73af927 293 SUPERFAMILY SSF53167 4 272 1.95E-89 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00387 927 1050 2.6E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF55781 209 384 2.4E-51 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF00512 His Kinase A (phospho-acceptor) domain 785 881 3.6E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF55781 577 749 6.11E-41 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF55781 24 199 3.49E-45 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00388 785 882 1.5E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 930 1048 7.6E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF55874 868 1048 2.23E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF55781 394 570 4.14E-49 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF01590 GAF domain 228 375 1.5E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF01590 GAF domain 45 189 1.3E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF01590 GAF domain 413 559 2.3E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Pfam PF01590 GAF domain 599 741 5.7E-16 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:3.30.450.40 397 561 1.4E-36 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:3.30.450.40 28 193 3.5E-32 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:3.30.450.40 583 744 5.9E-30 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:3.30.450.40 212 378 1.7E-37 T 06-07-2017 IPR029016 GAF domain-like APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:1.10.287.130 849 878 6.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:1.10.287.130 781 811 6.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1034 1047 1.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1009 1027 1.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 978 992 1.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 PRINTS PR00344 Bacterial sensor protein C-terminal signature 996 1006 1.2E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 Gene3D G3DSA:3.30.565.10 880 1050 1.1E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF47384 850 881 1.33E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SUPERFAMILY SSF47384 780 820 1.33E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00065 43 200 1.0E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00065 598 751 7.6E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00065 228 385 1.7E-27 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS19365 4b3b8ebecd8faa187f501f698110cd03 1054 SMART SM00065 413 570 4.6E-24 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 06-07-2017 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PIRSF PIRSF000722 1 406 7.0E-142 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 210 227 - T 06-07-2017 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 Gene3D G3DSA:3.30.420.40 89 211 1.4E-14 T 06-07-2017 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 383 395 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 3 14 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 329 345 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 307 320 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 180 193 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 PRINTS PR00471 Acetate kinase family signature 210 231 2.4E-41 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 TIGRFAM TIGR00016 ackA: acetate kinase 1 401 5.9E-143 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 Hamap MF_00020 Acetate kinase [ackA]. 1 405 160.561 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 SUPERFAMILY SSF53067 165 401 3.42E-85 T 06-07-2017 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 SUPERFAMILY SSF53067 1 202 3.17E-52 T 06-07-2017 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 Gene3D G3DSA:3.30.420.40 212 401 1.5E-75 T 06-07-2017 APT55_RS07840 1f3e4b8773e2cad289bc99b81ea69f5f 413 Pfam PF00871 Acetokinase family 2 396 2.1E-138 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT55_RS30815 545c97fc713e2a5bb7eca640b499b03b 641 Gene3D G3DSA:2.40.170.20 152 637 9.6E-80 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS30815 545c97fc713e2a5bb7eca640b499b03b 641 SUPERFAMILY SSF56935 39 640 6.41E-100 T 06-07-2017 APT55_RS30815 545c97fc713e2a5bb7eca640b499b03b 641 Pfam PF00593 TonB dependent receptor 407 637 3.7E-28 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS30815 545c97fc713e2a5bb7eca640b499b03b 641 Gene3D G3DSA:2.170.130.10 42 151 1.4E-27 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS30815 545c97fc713e2a5bb7eca640b499b03b 641 Pfam PF07715 TonB-dependent Receptor Plug Domain 41 149 5.1E-22 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS02660 eebc6339f27529b102a5d7a9d35005ed 356 Gene3D G3DSA:3.40.50.2000 169 309 6.5E-20 T 06-07-2017 APT55_RS02660 eebc6339f27529b102a5d7a9d35005ed 356 Pfam PF00534 Glycosyl transferases group 1 166 307 1.5E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS02660 eebc6339f27529b102a5d7a9d35005ed 356 SUPERFAMILY SSF53756 10 341 1.14E-67 T 06-07-2017 APT55_RS02660 eebc6339f27529b102a5d7a9d35005ed 356 Pfam PF13439 Glycosyltransferase Family 4 18 161 5.7E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS03115 779e940e268f8479c20a080265a77f29 43 Pfam PF00510 Cytochrome c oxidase subunit III 10 42 8.5E-7 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS03115 779e940e268f8479c20a080265a77f29 43 Gene3D G3DSA:1.20.120.80 1 42 4.4E-12 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS03115 779e940e268f8479c20a080265a77f29 43 SUPERFAMILY SSF81452 2 42 8.63E-13 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 Gene3D G3DSA:3.40.50.300 98 252 2.9E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 SUPERFAMILY SSF52540 98 317 2.0E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 67 309 3.5E-46 T 06-07-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 25 317 31.184 T 06-07-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 Pfam PF03193 Protein of unknown function, DUF258 82 254 3.9E-45 T 06-07-2017 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 APT55_RS30350 2a36d5a69087fbcc9e6fb58061b6af54 347 Gene3D G3DSA:1.10.40.50 256 323 2.9E-22 T 06-07-2017 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 101 115 - T 06-07-2017 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 68 398 1.3E-48 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 17 411 53.327 T 06-07-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 22 410 1.4E-186 T 06-07-2017 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 Gene3D G3DSA:3.40.50.1100 198 412 1.2E-90 T 06-07-2017 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 Gene3D G3DSA:3.40.50.1100 118 197 4.0E-22 T 06-07-2017 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 PIRSF PIRSF001413 9 413 5.7E-163 T 06-07-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS21590 66a59286a7951d2e27a3d73e30dec8ce 413 SUPERFAMILY SSF53686 18 409 1.96E-145 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS22265 42171178f704370e45b189690f0e1b36 885 Pfam PF12849 PBP superfamily domain 42 268 7.2E-32 T 06-07-2017 IPR024370 PBP domain APT55_RS22265 42171178f704370e45b189690f0e1b36 885 SUPERFAMILY SSF53850 46 283 2.94E-49 T 06-07-2017 APT55_RS22265 42171178f704370e45b189690f0e1b36 885 Pfam PF16258 Domain of unknown function (DUF4912) 783 884 3.1E-21 T 06-07-2017 IPR032585 Protein of unknown function DUF4912 APT55_RS22265 42171178f704370e45b189690f0e1b36 885 Pfam PF16258 Domain of unknown function (DUF4912) 521 630 4.9E-27 T 06-07-2017 IPR032585 Protein of unknown function DUF4912 APT55_RS22265 42171178f704370e45b189690f0e1b36 885 Gene3D G3DSA:3.40.190.10 45 177 5.5E-31 T 06-07-2017 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 SMART SM00642 83 452 7.4E-9 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 PIRSF PIRSF006337 1 579 1.8E-226 T 06-07-2017 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 13 545 5.4E-227 T 06-07-2017 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Gene3D G3DSA:2.60.40.10 5 87 1.7E-24 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Pfam PF11941 Domain of unknown function (DUF3459) 495 576 3.2E-12 T 06-07-2017 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 SUPERFAMILY SSF81296 3 87 1.66E-17 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 4 63 1.8E-5 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Gene3D G3DSA:3.20.20.80 101 441 6.1E-84 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Gene3D G3DSA:3.20.20.80 475 509 6.1E-84 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 Pfam PF00128 Alpha amylase, catalytic domain 118 213 2.3E-18 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS25660 a4065f0c47e581754e607ddb4e3b13a4 596 SUPERFAMILY SSF51445 84 510 9.34E-111 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS02670 ae3c10cb07cef6a5be8fe84fa49bc348 361 SMART SM00062 71 289 1.2E-22 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS02670 ae3c10cb07cef6a5be8fe84fa49bc348 361 Pfam PF09084 NMT1/THI5 like 94 273 5.3E-19 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS02670 ae3c10cb07cef6a5be8fe84fa49bc348 361 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 75 349 1.4E-70 T 06-07-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 APT55_RS02670 ae3c10cb07cef6a5be8fe84fa49bc348 361 SUPERFAMILY SSF53850 88 301 8.11E-49 T 06-07-2017 APT55_RS02670 ae3c10cb07cef6a5be8fe84fa49bc348 361 Gene3D G3DSA:3.40.190.10 152 273 8.5E-31 T 06-07-2017 APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 SMART SM00345 18 77 3.1E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 Gene3D G3DSA:1.10.10.10 4 78 2.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 SUPERFAMILY SSF46785 7 89 1.02E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 5.3E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 7.4E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS01255 b8482f7393c77df413d8d4b8ee0c1ff2 329 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 7.4E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS10085 de97af783ae6ecf6f9d70451527f6aea 333 SUPERFAMILY SSF81585 40 109 3.99E-8 T 06-07-2017 APT55_RS10085 de97af783ae6ecf6f9d70451527f6aea 333 Gene3D G3DSA:1.10.150.320 43 109 8.0E-9 T 06-07-2017 APT55_RS10085 de97af783ae6ecf6f9d70451527f6aea 333 Pfam PF12836 Helix-hairpin-helix motif 48 108 3.6E-11 T 06-07-2017 APT55_RS20085 a20cbc76cb68601aee6b980b774dfbf9 72 Pfam PF09720 Putative addiction module component 11 63 1.5E-21 T 06-07-2017 IPR013406 Conserved hypothetical protein CHP02574, addiction module APT55_RS20085 a20cbc76cb68601aee6b980b774dfbf9 72 TIGRFAM TIGR02574 stabl_TIGR02574: putative addiction module component, TIGR02574 family 9 67 3.0E-22 T 06-07-2017 IPR013406 Conserved hypothetical protein CHP02574, addiction module APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 SUPERFAMILY SSF141571 38 160 6.77E-37 T 06-07-2017 APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 Pfam PF00805 Pentapeptide repeats (8 copies) 76 115 5.4E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 Pfam PF00805 Pentapeptide repeats (8 copies) 40 73 7.8E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 Pfam PF00805 Pentapeptide repeats (8 copies) 119 155 2.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 Pfam PF00805 Pentapeptide repeats (8 copies) 216 255 6.0E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 Pfam PF16734 Type IV pilin-like G and H, putative 307 416 5.4E-20 T 06-07-2017 IPR031975 Type IV pilin-like putative secretion pathway protein G/H APT55_RS25255 5b77808e187ae556087dc72622a9508e 423 SUPERFAMILY SSF141571 204 300 7.85E-19 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 186 280 6.5E-32 T 06-07-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 699 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 774 799 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 722 745 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 700 715 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 833 844 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 912 925 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 884 900 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 PRINTS PR00868 DNA-polymerase family A (pol I) signature 752 765 1.1E-64 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SUPERFAMILY SSF56672 543 964 7.45E-138 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 TIGRFAM TIGR00593 pola: DNA polymerase I 9 965 1.6E-297 T 06-07-2017 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SUPERFAMILY SSF88723 5 185 3.68E-47 T 06-07-2017 IPR029060 PIN domain-like APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:3.30.420.10 354 563 3.9E-62 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 8 163 6.8E-49 T 06-07-2017 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:1.10.150.20 197 255 2.1E-29 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Pfam PF01612 3'-5' exonuclease 356 538 1.4E-29 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SMART SM00482 708 929 8.8E-88 T 06-07-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Pfam PF00476 DNA polymerase family A 571 963 1.6E-140 T 06-07-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:1.10.150.20 734 838 2.3E-28 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:1.20.1060.10 564 685 7.3E-38 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SUPERFAMILY SSF53098 358 538 1.68E-46 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:3.30.70.370 879 965 4.0E-64 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:3.30.70.370 686 733 4.0E-64 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:3.30.70.370 839 847 4.0E-64 T 06-07-2017 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SMART SM00474 355 538 1.6E-27 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SUPERFAMILY SSF47807 186 300 1.79E-33 T 06-07-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 Gene3D G3DSA:3.40.50.1010 8 196 2.2E-60 T 06-07-2017 IPR029060 PIN domain-like APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SMART SM00279 188 223 9.4E-15 T 06-07-2017 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 APT55_RS25295 24ebf81b4fa74422d3e7a79577021afd 965 SMART SM00475 7 276 3.4E-116 T 06-07-2017 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 23.301 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 SMART SM00732 4 104 2.5E-30 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 SUPERFAMILY SSF53098 6 138 4.7E-39 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 1.7E-44 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 Gene3D G3DSA:3.30.420.140 5 140 1.9E-44 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS23710 f9840892e6dc910e5d3035db449e94fb 143 Pfam PF03652 Holliday junction resolvase 6 137 1.4E-40 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Gene3D G3DSA:3.30.930.10 197 496 1.8E-107 T 06-07-2017 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 SUPERFAMILY SSF52954 493 598 1.21E-24 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Gene3D G3DSA:3.30.980.10 20 83 8.5E-38 T 06-07-2017 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Gene3D G3DSA:3.30.980.10 141 179 8.5E-38 T 06-07-2017 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 286 495 1.3E-38 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 122 174 2.0E-9 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Pfam PF03129 Anticodon binding domain 507 595 8.5E-17 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 SMART SM00863 122 174 1.3E-16 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 26 596 1.5E-228 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Gene3D G3DSA:3.30.54.20 84 140 3.7E-22 T 06-07-2017 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 SUPERFAMILY SSF55681 198 492 1.44E-94 T 06-07-2017 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 SUPERFAMILY SSF55186 18 195 7.19E-57 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 20 600 33.444 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 Gene3D G3DSA:3.40.50.800 497 600 7.4E-27 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 473 486 2.7E-51 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 292 320 2.7E-51 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 325 348 2.7E-51 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 430 458 2.7E-51 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS12230 35fc753cbacdc09fc80821ab49b138ae 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 500 512 2.7E-51 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT55_RS11550 13a0fec9027f44800f98d8576a9a2dbc 206 SUPERFAMILY SSF51182 30 205 4.45E-38 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS11550 13a0fec9027f44800f98d8576a9a2dbc 206 Gene3D G3DSA:2.60.120.10 77 204 6.5E-24 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 11 22 - T 06-07-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 1 328 36.367 T 06-07-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 Gene3D G3DSA:3.20.20.70 4 294 8.7E-70 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 Pfam PF13353 4Fe-4S single cluster domain 11 116 1.0E-5 T 06-07-2017 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 SUPERFAMILY SSF102114 4 290 2.22E-67 T 06-07-2017 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 3 328 7.4E-101 T 06-07-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 Pfam PF04055 Radical SAM superfamily 10 174 6.7E-23 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 Pfam PF06463 Molybdenum Cofactor Synthesis C 182 305 3.0E-35 T 06-07-2017 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS08305 7ea6b562a44b5dfa19f39a89b701ac1b 328 SMART SM00729 5 216 3.9E-6 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 29 527 3.9E-217 T 06-07-2017 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 36 476 2.5E-153 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 SUPERFAMILY SSF81442 25 528 2.49E-187 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 Gene3D G3DSA:1.20.210.10 21 536 7.2E-205 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 26 51 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 298 313 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 375 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 142 154 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 190 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 404 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 201 220 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 435 456 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 73 96 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 343 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 PRINTS PR01165 Cytochrome c oxidase subunit I signature 252 273 1.1E-104 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05885 1277f2a42a06c4957cc6d9b7c5f5c2e0 586 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 254 308 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 4 334 5.8E-128 T 06-07-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 Gene3D G3DSA:3.30.540.10 2 184 6.1E-60 T 06-07-2017 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 Gene3D G3DSA:3.30.540.10 185 340 5.8E-42 T 06-07-2017 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 3 340 7.1E-101 T 06-07-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 SUPERFAMILY SSF56655 4 337 2.75E-99 T 06-07-2017 APT55_RS11250 5b083e065f6f95a8117e8d88772a5fa8 345 PIRSF PIRSF004532 1 345 3.0E-141 T 06-07-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 150 171 60.0 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 196 217 0.87 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 173 194 6.0E-6 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 127 148 3.9E-6 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 104 125 6.6 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 81 102 0.12 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SMART SM00698 219 240 1.0E-6 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Gene3D G3DSA:2.20.110.10 61 172 5.6E-32 T 06-07-2017 APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Gene3D G3DSA:2.20.110.10 173 252 4.7E-27 T 06-07-2017 APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SUPERFAMILY SSF82185 56 159 9.55E-25 T 06-07-2017 APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 221 243 1.9E-7 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 129 151 2.7E-8 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 152 174 0.0093 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 83 105 6.8E-5 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 175 197 3.0E-6 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 106 128 9.5E-5 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 Pfam PF02493 MORN repeat 198 220 1.1E-5 T 06-07-2017 IPR003409 MORN motif APT55_RS10990 de22661afbe6a317d23ccdd34410f13a 277 SUPERFAMILY SSF82185 153 251 4.58E-28 T 06-07-2017 APT55_RS25425 9591a244e2e8a9061cc8b4794d38ff10 271 Gene3D G3DSA:3.40.50.300 8 231 2.1E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25425 9591a244e2e8a9061cc8b4794d38ff10 271 Pfam PF00005 ABC transporter 35 175 6.3E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25425 9591a244e2e8a9061cc8b4794d38ff10 271 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS25425 9591a244e2e8a9061cc8b4794d38ff10 271 SUPERFAMILY SSF52540 15 242 4.09E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25425 9591a244e2e8a9061cc8b4794d38ff10 271 SMART SM00382 44 225 1.3E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03655 532826751aabbf79ead16d344db06809 401 Gene3D G3DSA:4.10.320.10 112 160 1.7E-15 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03655 532826751aabbf79ead16d344db06809 401 Pfam PF00364 Biotin-requiring enzyme 3 75 2.3E-15 T 06-07-2017 IPR000089 Biotin/lipoyl attachment APT55_RS03655 532826751aabbf79ead16d344db06809 401 SUPERFAMILY SSF51230 2 93 6.81E-20 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS03655 532826751aabbf79ead16d344db06809 401 Gene3D G3DSA:2.40.50.100 2 92 3.6E-22 T 06-07-2017 APT55_RS03655 532826751aabbf79ead16d344db06809 401 Pfam PF02817 e3 binding domain 118 151 4.8E-10 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03655 532826751aabbf79ead16d344db06809 401 SUPERFAMILY SSF52777 183 399 8.01E-57 T 06-07-2017 APT55_RS03655 532826751aabbf79ead16d344db06809 401 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 183 401 6.6E-60 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03655 532826751aabbf79ead16d344db06809 401 Gene3D G3DSA:3.30.559.10 170 399 8.3E-56 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 APT55_RS03655 532826751aabbf79ead16d344db06809 401 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT55_RS03655 532826751aabbf79ead16d344db06809 401 SUPERFAMILY SSF47005 110 154 1.26E-10 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.30.300.30 874 994 2.1E-42 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.30.300.30 1940 2060 2.6E-42 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 1082 1259 1.19E-51 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF13193 AMP-binding enzyme C-terminal domain 1953 2027 4.3E-10 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF13193 AMP-binding enzyme C-terminal domain 887 963 6.4E-13 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2079 2094 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:1.10.1200.10 2061 2124 3.0E-27 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:1.10.1200.10 995 1057 1.6E-26 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 12 189 8.34E-50 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.40.50.980 467 621 1.0E-59 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.40.50.980 1539 1692 2.7E-58 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 2322 2571 4.11E-41 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1015 1030 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF47336 2051 2119 1.44E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 191 454 9.89E-62 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2442 2595 5.3E-42 T 06-07-2017 IPR010060 Non-ribosomal peptide synthase APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF56801 1501 2068 6.41E-174 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 1267 1507 7.78E-73 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 ProSitePatterns PS00455 Putative AMP-binding domain signature. 615 626 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF47336 984 1056 4.45E-21 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00501 AMP-binding enzyme 1545 1945 7.0E-108 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00501 AMP-binding enzyme 473 879 8.3E-111 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1684 1695 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF52777 2138 2314 1.67E-37 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00550 Phosphopantetheine attachment site 994 1056 3.0E-14 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00550 Phosphopantetheine attachment site 2056 2118 5.6E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1566 1968 1.6E-147 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 494 903 6.9E-145 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF13745 HxxPF-repeated domain 1401 1490 3.8E-38 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:2.30.38.10 789 869 4.9E-28 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:2.30.38.10 1853 1935 3.5E-31 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.40.50.980 622 780 2.6E-50 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.40.50.980 1693 1852 7.1E-45 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SMART SM00823 Phosphopantetheine attachment site 991 1060 0.0015 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SMART SM00823 Phosphopantetheine attachment site 2055 2123 5.4E-6 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 SUPERFAMILY SSF56801 427 1004 2.09E-177 T 06-07-2017 APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00668 Condensation domain 2133 2435 2.2E-60 T 06-07-2017 IPR001242 Condensation domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00668 Condensation domain 7 305 2.1E-72 T 06-07-2017 IPR001242 Condensation domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Pfam PF00668 Condensation domain 1078 1378 1.8E-82 T 06-07-2017 IPR001242 Condensation domain APT55_RS30730 7a97b9c797d7a6acce5b62db9170566f 2607 Gene3D G3DSA:3.30.559.10 1081 1233 2.7E-4 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SMART SM00028 44 77 0.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SMART SM00028 10 43 0.015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SUPERFAMILY SSF53756 168 428 3.66E-6 T 06-07-2017 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SUPERFAMILY SSF48452 134 244 7.21E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SUPERFAMILY SSF48452 14 99 7.21E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 Gene3D G3DSA:1.25.40.10 11 75 6.1E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11155 da133aeb94e1a8c9c601d0a612bfdaa7 469 SUPERFAMILY SSF48452 7 76 9.34E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 Gene3D G3DSA:3.40.50.2300 2 122 1.3E-39 T 06-07-2017 APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 222 3.1E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 Gene3D G3DSA:1.10.10.10 124 223 2.1E-36 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 SMART SM00448 3 114 1.5E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 SUPERFAMILY SSF52172 3 181 4.53E-42 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 Pfam PF00072 Response regulator receiver domain 5 115 2.5E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27085 fc841a22986c724303619dd4a266a65d 224 SMART SM00862 147 222 9.2E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS10290 294db0e13dafa644b7e9e20e8bd3f4c5 124 Gene3D G3DSA:3.40.50.2300 7 123 1.8E-37 T 06-07-2017 APT55_RS10290 294db0e13dafa644b7e9e20e8bd3f4c5 124 SMART SM00448 7 118 4.0E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10290 294db0e13dafa644b7e9e20e8bd3f4c5 124 Pfam PF00072 Response regulator receiver domain 9 118 7.7E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10290 294db0e13dafa644b7e9e20e8bd3f4c5 124 SUPERFAMILY SSF52172 8 123 8.97E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS21040 e72874107b0b26e1316afcbb76b61846 473 TIGRFAM TIGR00836 amt: ammonium transporter 46 459 2.8E-132 T 06-07-2017 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 APT55_RS21040 e72874107b0b26e1316afcbb76b61846 473 Pfam PF00909 Ammonium Transporter Family 48 459 1.3E-117 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 APT55_RS21040 e72874107b0b26e1316afcbb76b61846 473 SUPERFAMILY SSF111352 43 436 2.88E-120 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 APT55_RS21040 e72874107b0b26e1316afcbb76b61846 473 ProSitePatterns PS01219 Ammonium transporters signature. 214 239 - T 06-07-2017 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 APT55_RS21040 e72874107b0b26e1316afcbb76b61846 473 Gene3D G3DSA:1.10.3430.10 40 439 4.0E-131 T 06-07-2017 IPR029020 Ammonium/urea transporter APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 Pfam PF00582 Universal stress protein family 1 134 2.2E-19 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 Pfam PF00582 Universal stress protein family 154 281 3.0E-7 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 Gene3D G3DSA:3.40.50.620 1 136 6.1E-22 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 SUPERFAMILY SSF52402 154 282 2.6E-11 T 06-07-2017 APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 PRINTS PR01438 Universal stress protein signature 112 134 1.8E-6 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 PRINTS PR01438 Universal stress protein signature 2 20 1.8E-6 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 PRINTS PR01438 Universal stress protein signature 94 106 1.8E-6 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 Gene3D G3DSA:3.40.50.620 152 281 4.3E-12 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS21735 edf5ac3c1207398d3f3a04427c3e7446 284 SUPERFAMILY SSF52402 1 135 1.09E-22 T 06-07-2017 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 SUPERFAMILY SSF53218 181 327 2.36E-40 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Gene3D G3DSA:2.40.340.10 336 409 9.2E-7 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 170 6.6E-29 T 06-07-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 SUPERFAMILY SSF63867 333 408 8.63E-8 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 SUPERFAMILY SSF63882 1 180 3.27E-45 T 06-07-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 257 291 - T 06-07-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Gene3D G3DSA:3.40.980.10 168 334 2.4E-59 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Pfam PF00994 Probable molybdopterin binding domain 184 322 7.6E-28 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Pfam PF03454 MoeA C-terminal region (domain IV) 338 408 3.0E-10 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Gene3D G3DSA:2.170.190.11 53 133 4.4E-30 T 06-07-2017 APT55_RS19075 448b593d274cfeca69eba88f41430642 409 SMART SM00852 184 323 1.4E-42 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19075 448b593d274cfeca69eba88f41430642 409 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 181 319 1.1E-33 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS19075 448b593d274cfeca69eba88f41430642 409 Gene3D G3DSA:3.90.105.10 134 167 2.4E-9 T 06-07-2017 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 Pfam PF00498 FHA domain 28 89 5.8E-10 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 Gene3D G3DSA:2.60.200.20 18 101 5.4E-14 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 Gene3D G3DSA:1.10.510.10 241 420 1.5E-27 T 06-07-2017 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 SMART SM00240 27 76 2.3E-6 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 SUPERFAMILY SSF56112 165 420 1.91E-48 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 SMART SM00220 178 426 3.8E-13 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 SUPERFAMILY SSF49879 3 100 6.31E-16 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 297 309 - T 06-07-2017 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 Pfam PF00069 Protein kinase domain 178 373 1.5E-22 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS16015 fb6bf8e9d94e10ce0e198e8c23db34f4 426 Gene3D G3DSA:3.30.200.20 169 240 2.3E-12 T 06-07-2017 APT55_RS19375 19279a2aa9ef45efcfff2133125400e6 236 Pfam PF01914 MarC family integral membrane protein 23 219 1.8E-55 T 06-07-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT55_RS19375 19279a2aa9ef45efcfff2133125400e6 236 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 22 218 1.0E-55 T 06-07-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SUPERFAMILY SSF52172 621 739 7.68E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 584 597 5.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 577 5.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 538 5.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 552 5.6E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Gene3D G3DSA:3.30.565.10 425 602 7.6E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SUPERFAMILY SSF55874 428 601 2.36E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Pfam PF05231 MASE1 17 312 3.3E-37 T 06-07-2017 IPR007895 MASE1 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Gene3D G3DSA:3.40.50.2300 622 739 1.0E-33 T 06-07-2017 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SMART SM00448 623 733 2.5E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 436 8.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SUPERFAMILY SSF47384 361 439 2.35E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Pfam PF00072 Response regulator receiver domain 625 733 1.8E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SMART SM00387 487 600 7.8E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Gene3D G3DSA:1.10.287.130 366 424 4.1E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 SMART SM00388 373 439 2.4E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28870 d21dde99d96a333cf348453df4ff4b0c 746 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 598 5.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS31035 cd4e9aa02cad901764bd9842820bbdc2 274 SUPERFAMILY SSF53098 78 237 2.2E-9 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31035 cd4e9aa02cad901764bd9842820bbdc2 274 Pfam PF13546 DDE superfamily endonuclease 35 253 1.8E-49 T 06-07-2017 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 SMART SM00862 145 220 1.1E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 Gene3D G3DSA:3.40.50.2300 2 122 1.4E-35 T 06-07-2017 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 1.3E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 SMART SM00448 1 112 1.5E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 SUPERFAMILY SSF52172 2 176 5.42E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17210 6d5bbca06ccb34d949d0e55fdc1c27d8 224 Gene3D G3DSA:1.10.10.10 123 223 7.9E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02150 86cee68550faecd345751a42dfea527b 394 Gene3D G3DSA:3.90.1150.10 262 389 3.4E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS02150 86cee68550faecd345751a42dfea527b 394 SUPERFAMILY SSF53383 8 389 5.98E-111 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS02150 86cee68550faecd345751a42dfea527b 394 Pfam PF00155 Aminotransferase class I and II 36 377 1.1E-63 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS02150 86cee68550faecd345751a42dfea527b 394 Gene3D G3DSA:3.40.640.10 50 261 2.8E-60 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 Gene3D G3DSA:2.40.30.60 4 93 5.3E-24 T 06-07-2017 IPR002676 RimM protein GO:0006364 APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 SUPERFAMILY SSF50346 100 172 5.49E-13 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 SUPERFAMILY SSF50447 3 94 7.06E-21 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 Pfam PF01782 RimM N-terminal domain 5 91 1.3E-24 T 06-07-2017 IPR002676 RimM protein GO:0006364 APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 3 172 25.779 T 06-07-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 Pfam PF05239 PRC-barrel domain 97 172 5.3E-9 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 4 172 8.7E-45 T 06-07-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APT55_RS26990 2fd74e3d33c8c6f8fab817218ef63db9 175 Gene3D G3DSA:2.30.30.240 100 172 4.1E-17 T 06-07-2017 APT55_RS21155 621d709c11b3251d18506b4ad918f933 450 Gene3D G3DSA:3.30.465.10 114 218 1.9E-9 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS21155 621d709c11b3251d18506b4ad918f933 450 SUPERFAMILY SSF56176 6 219 1.64E-39 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS21155 621d709c11b3251d18506b4ad918f933 450 Gene3D G3DSA:3.30.43.10 4 104 8.1E-21 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS21155 621d709c11b3251d18506b4ad918f933 450 Pfam PF01565 FAD binding domain 52 183 7.5E-29 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS21155 621d709c11b3251d18506b4ad918f933 450 Gene3D G3DSA:1.10.45.10 429 448 8.3E-4 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 Gene3D G3DSA:3.30.70.1230 449 644 9.3E-48 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 SMART SM00044 412 631 9.6E-20 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 Pfam PF05226 CHASE2 domain 25 348 9.5E-58 T 06-07-2017 IPR007890 CHASE2 APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 SUPERFAMILY SSF55073 446 644 3.45E-60 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 453 637 5.2E-37 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS08575 e6eb78f64382d90a8abf1d9d03d1bbfb 653 SMART SM01080 35 351 1.7E-70 T 06-07-2017 IPR007890 CHASE2 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 PIRSF PIRSF000106 35 464 9.4E-86 T 06-07-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Pfam PF03949 Malic enzyme, NAD binding domain 242 456 1.4E-27 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 SUPERFAMILY SSF51735 240 463 2.96E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Pfam PF00390 Malic enzyme, N-terminal domain 98 228 5.5E-28 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 SUPERFAMILY SSF53223 89 238 2.88E-55 T 06-07-2017 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Gene3D G3DSA:3.40.50.10380 92 237 1.2E-54 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Gene3D G3DSA:3.30.70.260 11 81 4.8E-9 T 06-07-2017 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Gene3D G3DSA:3.40.50.720 238 463 2.0E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 SMART SM00919 240 457 1.0E-121 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 Pfam PF01842 ACT domain 14 78 1.6E-7 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 SMART SM01274 95 228 5.9E-82 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT55_RS27640 a61ade9f8bd2eb8c6d8af915a83a455a 464 SUPERFAMILY SSF55021 14 83 1.3E-5 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 74 355 7.9E-28 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 385 608 2.3E-43 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF81653 107 206 1.44E-20 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF81665 28 105 6.8E-10 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF81665 207 311 6.8E-10 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF81665 612 670 6.8E-10 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Gene3D G3DSA:3.40.1110.10 328 454 1.8E-37 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 313 541 4.1E-34 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 527 543 1.5E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 675 688 1.5E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 499 515 1.5E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Gene3D G3DSA:3.40.50.1000 455 574 7.0E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 317 331 6.9E-25 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 550 562 6.9E-25 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 152 166 6.9E-25 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 474 484 6.9E-25 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 527 546 6.9E-25 T 06-07-2017 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF56784 446 571 5.29E-40 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF56784 305 329 5.29E-40 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 SUPERFAMILY SSF56784 364 415 5.29E-40 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Gene3D G3DSA:2.70.150.10 30 207 4.1E-25 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 319 325 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 5 685 0.0 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 5 688 38.771 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT55_RS17225 8396913ed2da635a743ebfe49d864437 688 Pfam PF00122 E1-E2 ATPase 72 308 1.7E-40 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS22365 94a847f8b571211d5702f0f0b6ff909e 84 SUPERFAMILY SSF52833 1 80 1.54E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS22365 94a847f8b571211d5702f0f0b6ff909e 84 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 76 1.3E-20 T 06-07-2017 IPR008554 Glutaredoxin-like APT55_RS22365 94a847f8b571211d5702f0f0b6ff909e 84 Gene3D G3DSA:3.40.30.10 1 79 1.2E-20 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28545 b41b307525964868537f723e0390f6bb 151 Gene3D G3DSA:1.10.101.10 62 138 2.2E-19 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS28545 b41b307525964868537f723e0390f6bb 151 SUPERFAMILY SSF47090 60 137 5.34E-17 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS28545 b41b307525964868537f723e0390f6bb 151 Pfam PF01471 Putative peptidoglycan binding domain 70 136 2.2E-14 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS16315 98019c43d241c0f76a7737217339027c 279 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 13 218 5.3E-81 T 06-07-2017 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 APT55_RS16315 98019c43d241c0f76a7737217339027c 279 Pfam PF01343 Peptidase family S49 69 220 2.2E-51 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APT55_RS16315 98019c43d241c0f76a7737217339027c 279 Gene3D G3DSA:3.90.226.10 10 109 6.8E-43 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16315 98019c43d241c0f76a7737217339027c 279 Gene3D G3DSA:3.90.226.10 147 227 6.8E-43 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16315 98019c43d241c0f76a7737217339027c 279 SUPERFAMILY SSF52096 148 209 2.49E-37 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16315 98019c43d241c0f76a7737217339027c 279 SUPERFAMILY SSF52096 10 117 2.49E-37 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 Pfam PF00875 DNA photolyase 11 179 1.3E-42 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 SUPERFAMILY SSF52425 8 184 2.88E-52 T 06-07-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 SUPERFAMILY SSF48173 210 483 1.19E-98 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 Pfam PF03441 FAD binding domain of DNA photolyase 290 485 6.2E-62 T 06-07-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 PRINTS PR00147 DNA photolyase signature 337 353 1.3E-12 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 PRINTS PR00147 DNA photolyase signature 396 410 1.3E-12 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 PRINTS PR00147 DNA photolyase signature 357 375 1.3E-12 T 06-07-2017 IPR002081 Cryptochrome/DNA photolyase class 1 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 Gene3D G3DSA:3.40.50.620 6 155 2.2E-50 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 Gene3D G3DSA:1.10.579.10 299 487 3.9E-72 T 06-07-2017 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 TIGRFAM TIGR02765 crypto_DASH: cryptochrome, DASH family 9 436 8.2E-185 T 06-07-2017 IPR014133 Cryptochrome DASH GO:0003913|GO:0006281 APT55_RS08055 941d2758f266c335d179909dcd62cef7 501 Gene3D G3DSA:1.25.40.80 156 298 1.2E-61 T 06-07-2017 APT55_RS22965 9a032c43ca766d60852f296ba9439706 229 Pfam PF00959 Phage lysozyme 88 212 1.4E-20 T 06-07-2017 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 APT55_RS22965 9a032c43ca766d60852f296ba9439706 229 SUPERFAMILY SSF53955 64 225 3.09E-38 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS22965 9a032c43ca766d60852f296ba9439706 229 Gene3D G3DSA:1.10.530.10 63 227 2.2E-44 T 06-07-2017 APT55_RS22965 9a032c43ca766d60852f296ba9439706 229 ProSitePatterns PS00359 Ribosomal protein L11 signature. 192 207 - T 06-07-2017 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 SUPERFAMILY SSF46894 145 216 9.86E-22 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 7.9E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 Gene3D G3DSA:3.40.50.2300 8 155 2.4E-39 T 06-07-2017 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 Pfam PF00072 Response regulator receiver domain 11 122 2.9E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 SMART SM00448 9 122 8.0E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 Gene3D G3DSA:1.10.10.10 156 215 1.7E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 SMART SM00421 153 210 3.4E-24 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19030 ca428e7651272e9ed18d20422f0f634c 216 SUPERFAMILY SSF52172 9 141 5.69E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00388 698 764 2.5E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.40.50.2300 943 1057 6.7E-29 T 06-07-2017 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55785 171 284 1.61E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00448 944 1054 1.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF13188 PAS domain 299 360 1.8E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF47384 686 764 1.39E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.450.20 36 153 1.8E-24 T 06-07-2017 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 443 547 1.2E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 549 677 3.0E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 295 418 1.5E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 37 156 1.9E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 179 293 3.7E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55785 433 543 2.27E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55874 753 924 4.85E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00086 372 411 180.0 T 06-07-2017 IPR001610 PAC motif APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00086 628 671 8.8 T 06-07-2017 IPR001610 PAC motif APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00086 499 541 1.3E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00086 114 155 3.3E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF08448 PAS fold 188 288 1.7E-13 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF00512 His Kinase A (phospho-acceptor) domain 699 763 2.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF08447 PAS fold 576 664 2.5E-10 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF08447 PAS fold 446 533 5.7E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 PRINTS PR00344 Bacterial sensor protein C-terminal signature 847 861 8.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 875 8.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 PRINTS PR00344 Bacterial sensor protein C-terminal signature 907 920 8.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 PRINTS PR00344 Bacterial sensor protein C-terminal signature 882 900 8.0E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.450.20 285 401 5.4E-19 T 06-07-2017 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:1.10.287.130 690 749 1.1E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.565.10 750 922 4.1E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00387 810 923 8.2E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF52172 944 1058 1.57E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF00072 Response regulator receiver domain 946 1054 1.8E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55785 283 392 8.2E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55785 538 669 4.36E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SUPERFAMILY SSF55785 35 153 1.08E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 810 921 3.6E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Pfam PF00989 PAS fold 39 152 2.8E-13 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.450.20 402 542 3.6E-32 T 06-07-2017 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.450.20 543 685 7.7E-28 T 06-07-2017 APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00091 423 493 0.15 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00091 37 104 6.0E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00091 298 366 0.014 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00091 553 620 0.0043 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 SMART SM00091 181 248 1.1E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS18980 c4f2f13ddd027f06bd78282b0fce4370 1059 Gene3D G3DSA:3.30.450.20 173 284 3.4E-23 T 06-07-2017 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 SUPERFAMILY SSF53474 2 299 2.7E-66 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 Pfam PF00561 alpha/beta hydrolase fold 35 296 6.6E-31 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 PIRSF PIRSF006431 1 316 1.9E-142 T 06-07-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 Gene3D G3DSA:3.40.50.1820 8 307 7.4E-72 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 3.4E-13 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 3.4E-13 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 3.4E-13 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT55_RS21405 a7b2a52b70099121f175f591902e1a0c 321 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 312 1.3E-140 T 06-07-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 APT55_RS27830 feee240dc6dff1a5b0ec801198f499b2 292 Pfam PF00535 Glycosyl transferase family 2 8 108 1.2E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS27830 feee240dc6dff1a5b0ec801198f499b2 292 SUPERFAMILY SSF53448 5 221 8.19E-51 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27830 feee240dc6dff1a5b0ec801198f499b2 292 Gene3D G3DSA:3.90.550.10 5 229 3.6E-45 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00360 666af91832ebe8b69f88ef4264e10153 112 Pfam PF14242 Domain of unknown function (DUF4342) 33 110 2.2E-29 T 06-07-2017 IPR025642 Domain of unknown function DUF4342 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 120 609 2.8E-217 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 340 2.4E-44 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Pfam PF01434 Peptidase family M41 402 608 2.0E-72 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Gene3D G3DSA:3.40.50.300 168 349 1.2E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Gene3D G3DSA:1.10.8.60 350 416 6.3E-27 T 06-07-2017 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 SUPERFAMILY SSF52540 168 435 1.9E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Pfam PF06480 FtsH Extracellular 20 107 1.5E-9 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 SMART SM00382 203 343 2.8E-25 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 9 618 36.041 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 SUPERFAMILY SSF140990 422 616 8.11E-63 T 06-07-2017 APT55_RS23535 814da18bdcded0f4f78a3b21299dfb52 637 ProSitePatterns PS00674 AAA-protein family signature. 311 329 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS28005 0f39ee3072a29f7a97fc53641bdfc821 396 Pfam PF13692 Glycosyl transferases group 1 223 355 2.6E-9 T 06-07-2017 APT55_RS28005 0f39ee3072a29f7a97fc53641bdfc821 396 SUPERFAMILY SSF53756 141 381 3.09E-13 T 06-07-2017 APT55_RS23135 d5a14e2ee61b59fa0a7955e82c5eddda 371 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 27 365 5.8E-109 T 06-07-2017 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APT55_RS23135 d5a14e2ee61b59fa0a7955e82c5eddda 371 Gene3D G3DSA:3.40.50.2000 7 204 2.8E-76 T 06-07-2017 APT55_RS23135 d5a14e2ee61b59fa0a7955e82c5eddda 371 SUPERFAMILY SSF53756 7 369 4.93E-127 T 06-07-2017 APT55_RS23135 d5a14e2ee61b59fa0a7955e82c5eddda 371 Gene3D G3DSA:3.40.50.2000 205 368 1.7E-57 T 06-07-2017 APT55_RS23135 d5a14e2ee61b59fa0a7955e82c5eddda 371 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 8 367 6.8E-158 T 06-07-2017 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 APT55_RS15265 1299f20acf7553cddc4a8f29b73c87e7 326 Gene3D G3DSA:3.60.110.10 6 298 3.7E-66 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS15265 1299f20acf7553cddc4a8f29b73c87e7 326 SUPERFAMILY SSF56317 6 298 3.01E-76 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS15265 1299f20acf7553cddc4a8f29b73c87e7 326 TIGRFAM TIGR04048 nitrile_sll0784: putative nitrilase, sll0784 family 6 300 1.7E-174 T 06-07-2017 IPR023919 Nitrilase-related, sll0784 APT55_RS15265 1299f20acf7553cddc4a8f29b73c87e7 326 Pfam PF00795 Carbon-nitrogen hydrolase 8 280 6.9E-60 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21720 1ee74eeaaeedc4e20faf23d585d4e0b0 371 SUPERFAMILY SSF53067 1 108 8.25E-20 T 06-07-2017 APT55_RS21720 1ee74eeaaeedc4e20faf23d585d4e0b0 371 SUPERFAMILY SSF53067 141 345 8.25E-20 T 06-07-2017 APT55_RS21720 1ee74eeaaeedc4e20faf23d585d4e0b0 371 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 1 370 39.39 T 06-07-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 APT55_RS21720 1ee74eeaaeedc4e20faf23d585d4e0b0 371 Gene3D G3DSA:3.30.420.40 1 197 3.2E-73 T 06-07-2017 APT55_RS21720 1ee74eeaaeedc4e20faf23d585d4e0b0 371 Pfam PF03702 Uncharacterised protein family (UPF0075) 1 368 1.9E-117 T 06-07-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 APT55_RS28380 1ec0b8538326c57c89c8544cf6685237 161 Pfam PF00801 PKD domain 75 137 1.3E-9 T 06-07-2017 IPR000601 PKD domain APT55_RS28380 1ec0b8538326c57c89c8544cf6685237 161 Gene3D G3DSA:2.60.40.670 70 144 2.2E-15 T 06-07-2017 IPR000601 PKD domain APT55_RS28380 1ec0b8538326c57c89c8544cf6685237 161 SUPERFAMILY SSF49299 60 147 7.59E-16 T 06-07-2017 IPR000601 PKD domain APT55_RS28380 1ec0b8538326c57c89c8544cf6685237 161 SMART SM00089 58 147 1.6E-7 T 06-07-2017 IPR022409 PKD/Chitinase domain APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1473 1487 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1297 1332 4.7E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1053 1086 0.0023 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1217 1250 0.16 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1130 1168 7.4E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1173 1209 1.3E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1254 1292 8.4E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1092 1127 1.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1370 1404 1.2E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1408 1446 9.1E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1450 1486 4.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00400 WD domain, G-beta repeat 1533 1565 1.4E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:3.40.50.300 510 663 6.6E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:3.40.50.1460 21 214 2.6E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 PRINTS PR00320 G protein beta WD-40 repeat signature 1552 1566 5.4E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 PRINTS PR00320 G protein beta WD-40 repeat signature 1197 1211 5.4E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 PRINTS PR00320 G protein beta WD-40 repeat signature 1279 1293 5.4E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SUPERFAMILY SSF50978 1350 1611 6.57E-66 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SUPERFAMILY SSF52129 19 218 4.18E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SUPERFAMILY SSF52540 511 745 4.88E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1552 1566 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:2.130.10.10 1050 1246 4.4E-65 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1197 1211 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:2.130.10.10 1247 1357 5.3E-28 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:2.130.10.10 1358 1481 4.1E-38 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Gene3D G3DSA:2.130.10.10 1482 1609 6.7E-32 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 Pfam PF00656 Caspase domain 21 218 3.4E-18 T 06-07-2017 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1155 1169 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1171 1210 1.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1088 1127 1.2E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1294 1333 3.4E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1253 1292 6.8E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1448 1486 5.8E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1407 1446 6.6E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1568 1605 2.6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1367 1404 3.7E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1528 1565 5.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1488 1525 8.0E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1213 1251 0.011 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1129 1168 2.4E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SMART SM00320 1047 1086 8.8E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1279 1293 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1391 1405 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS04360 8399b02c8e7e0d99a974bda494589de1 1634 SUPERFAMILY SSF50978 1051 1365 1.63E-85 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS21775 59fa19ccaba76d1664a07da1adfa29d6 251 Gene3D G3DSA:3.40.50.1000 155 243 2.3E-21 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21775 59fa19ccaba76d1664a07da1adfa29d6 251 Gene3D G3DSA:3.40.50.1000 13 92 2.3E-21 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21775 59fa19ccaba76d1664a07da1adfa29d6 251 Pfam PF08282 haloacid dehalogenase-like hydrolase 16 84 7.6E-9 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21775 59fa19ccaba76d1664a07da1adfa29d6 251 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 15 209 3.2E-17 T 06-07-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APT55_RS21775 59fa19ccaba76d1664a07da1adfa29d6 251 SUPERFAMILY SSF56784 10 248 6.12E-29 T 06-07-2017 IPR023214 HAD-like domain APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Gene3D G3DSA:1.10.287.130 511 578 2.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 682 1.7E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 720 1.7E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 725 738 1.7E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SMART SM00387 631 740 1.0E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Gene3D G3DSA:3.30.565.10 589 739 3.4E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SUPERFAMILY SSF55781 318 488 2.18E-39 T 06-07-2017 IPR029016 GAF domain-like APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SMART SM00388 518 585 7.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Pfam PF05231 MASE1 18 311 3.7E-23 T 06-07-2017 IPR007895 MASE1 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Pfam PF00512 His Kinase A (phospho-acceptor) domain 519 578 6.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SUPERFAMILY SSF55874 576 739 7.47E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 632 739 1.0E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Gene3D G3DSA:3.30.450.40 326 480 6.8E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 Pfam PF01590 GAF domain 339 478 5.0E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SMART SM00065 339 488 1.2E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS12035 6ae7a8088bc7bd60a3c709fe902b7155 740 SUPERFAMILY SSF47384 504 583 8.44E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 SUPERFAMILY SSF53649 306 514 2.93E-75 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 SUPERFAMILY SSF53649 8 80 2.93E-75 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 7 515 49.26 T 06-07-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 294 8.5E-79 T 06-07-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 PIRSF PIRSF001492 3 517 1.0E-207 T 06-07-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Gene3D G3DSA:3.40.1450.10 81 306 2.9E-89 T 06-07-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 8 514 8.6E-223 T 06-07-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Gene3D G3DSA:3.40.720.10 310 515 3.4E-86 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Gene3D G3DSA:3.40.720.10 8 80 3.4E-86 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 SUPERFAMILY SSF64158 80 304 3.92E-82 T 06-07-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS08760 070607423dc5a19489f3ea457a5f418c 532 Pfam PF01676 Metalloenzyme superfamily 8 502 5.5E-81 T 06-07-2017 IPR006124 Metalloenzyme GO:0003824|GO:0046872 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 Pfam PF12833 Helix-turn-helix domain 217 294 6.1E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 SMART SM00342 211 294 2.0E-28 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 SUPERFAMILY SSF46689 248 296 4.39E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 Gene3D G3DSA:1.10.10.60 193 247 3.2E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 Gene3D G3DSA:1.10.10.60 248 296 5.8E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS04480 51b0c1d9b2f5c9349fd17bb0fc7df4fb 297 SUPERFAMILY SSF46689 194 245 2.46E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS02365 2c5c9a5964a62fa451b800d18479b040 121 SUPERFAMILY SSF54593 3 120 9.4E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS02365 2c5c9a5964a62fa451b800d18479b040 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 118 1.1E-9 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS02365 2c5c9a5964a62fa451b800d18479b040 121 Gene3D G3DSA:3.10.180.10 9 120 1.7E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS17220 f9ef96e2a4ba346314a475101aaea10e 332 Gene3D G3DSA:3.40.50.150 171 272 1.0E-11 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17220 f9ef96e2a4ba346314a475101aaea10e 332 Pfam PF01728 FtsJ-like methyltransferase 170 264 3.7E-9 T 06-07-2017 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 APT55_RS17220 f9ef96e2a4ba346314a475101aaea10e 332 SUPERFAMILY SSF53335 161 288 2.01E-14 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.565.10 852 991 1.8E-9 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55785 77 193 1.71E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55874 858 993 8.25E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.450.20 57 192 2.3E-9 T 06-07-2017 APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.450.20 193 311 4.7E-13 T 06-07-2017 APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.450.40 355 535 4.5E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55785 650 776 1.0E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00091 536 609 1.4E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00091 207 274 3.1 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00091 665 735 9.8E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00091 82 147 1.0 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF08448 PAS fold 214 315 2.3E-8 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55785 546 653 2.58E-27 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.450.20 650 794 4.5E-27 T 06-07-2017 APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55785 192 311 2.79E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 902 992 1.3E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF08447 PAS fold 691 769 2.4E-16 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00086 271 313 42.0 T 06-07-2017 IPR001610 PAC motif APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00086 611 653 4.1E-12 T 06-07-2017 IPR001610 PAC motif APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00086 740 779 7.5E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SMART SM00387 895 998 4.1E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 664 785 1.0E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 532 660 9.7E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF07568 Histidine kinase 799 874 8.5E-31 T 06-07-2017 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF13188 PAS domain 84 134 1.5E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 SUPERFAMILY SSF55781 382 532 6.32E-9 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Pfam PF13426 PAS domain 547 652 3.7E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS04880 d8af99835cc2dd0cc195ac9d54385752 1001 Gene3D G3DSA:3.30.450.20 547 649 1.3E-32 T 06-07-2017 APT55_RS03865 8941e4117c197978a9577e4a23fb680b 429 Gene3D G3DSA:3.40.50.2000 251 404 3.0E-25 T 06-07-2017 APT55_RS03865 8941e4117c197978a9577e4a23fb680b 429 SUPERFAMILY SSF53756 1 128 7.46E-52 T 06-07-2017 APT55_RS03865 8941e4117c197978a9577e4a23fb680b 429 SUPERFAMILY SSF53756 189 427 7.46E-52 T 06-07-2017 APT55_RS03865 8941e4117c197978a9577e4a23fb680b 429 Pfam PF00534 Glycosyl transferases group 1 247 404 5.7E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Gene3D G3DSA:2.40.37.10 370 401 8.0E-14 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Gene3D G3DSA:2.40.37.10 495 625 8.0E-14 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 143 161 - T 06-07-2017 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 48 676 46.745 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PIRSF PIRSF001336 32 676 5.2E-290 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 322 335 - T 06-07-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 378 397 5.9E-21 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 143 161 5.9E-21 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 582 595 5.9E-21 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 167 179 5.9E-21 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 297 5.9E-21 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 TIGRFAM TIGR01273 speA: arginine decarboxylase 50 674 8.4E-235 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 123 388 9.9E-43 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 SUPERFAMILY SSF51419 112 390 6.17E-66 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 SUPERFAMILY SSF50621 499 603 3.38E-8 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 393 602 5.9E-30 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 Gene3D G3DSA:3.20.20.10 113 369 1.2E-50 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 135 149 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 111 126 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 191 206 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 368 385 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 217 238 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 504 525 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 582 603 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 241 263 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS12205 706ebc589ae3d4b6da93f8ea77ede503 676 PRINTS PR01180 Arginine decarboxylase signature 529 554 3.4E-78 T 06-07-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 APT55_RS31680 16ae6b1b3f4c7b610b11df0c3300ba02 80 SMART SM00530 10 67 1.3E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS31680 16ae6b1b3f4c7b610b11df0c3300ba02 80 SUPERFAMILY SSF47413 8 69 6.91E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31680 16ae6b1b3f4c7b610b11df0c3300ba02 80 Pfam PF13560 Helix-turn-helix domain 11 66 2.8E-11 T 06-07-2017 APT55_RS31680 16ae6b1b3f4c7b610b11df0c3300ba02 80 Gene3D G3DSA:1.10.260.40 9 69 6.5E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 SUPERFAMILY SSF53756 11 359 1.57E-100 T 06-07-2017 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 14 147 9.0E-34 T 06-07-2017 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 Gene3D G3DSA:3.40.50.2000 9 197 4.1E-52 T 06-07-2017 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 194 341 3.8E-39 T 06-07-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 13 361 32.397 T 06-07-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 Gene3D G3DSA:3.40.50.2000 198 335 3.4E-13 T 06-07-2017 APT55_RS23200 b5dac8b9eb4968ebe6a78510d57c4225 361 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 9 356 8.5E-89 T 06-07-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Gene3D G3DSA:1.10.40.30 386 443 1.6E-25 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Pfam PF14698 Argininosuccinate lyase C-terminal 375 443 2.5E-22 T 06-07-2017 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 204 220 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 321 340 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 112 134 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 242 266 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 153 173 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00145 Argininosuccinate lyase family signature 286 302 3.3E-68 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Gene3D G3DSA:1.20.200.10 118 385 2.4E-97 T 06-07-2017 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00149 Fumarate lyase superfamily signature 286 302 3.4E-27 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00149 Fumarate lyase superfamily signature 113 131 3.4E-27 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00149 Fumarate lyase superfamily signature 242 269 3.4E-27 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 PRINTS PR00149 Fumarate lyase superfamily signature 158 176 3.4E-27 T 06-07-2017 IPR000362 Fumarate lyase family APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 ProSitePatterns PS00163 Fumarate lyases signature. 286 295 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Hamap MF_00006 Argininosuccinate lyase [argH]. 13 465 42.841 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Pfam PF00206 Lyase 18 311 5.2E-75 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 Gene3D G3DSA:1.10.275.10 13 117 9.6E-38 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 SUPERFAMILY SSF48557 18 467 1.73E-145 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 APT55_RS26415 65e77ef6bbb77d880e0fe593a5cd6a9a 468 TIGRFAM TIGR00838 argH: argininosuccinate lyase 14 467 9.3E-202 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 Hamap MF_01227 CTP synthase [pyrG]. 2 532 52.0 T 06-07-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 SUPERFAMILY SSF52540 1 271 5.57E-124 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 Gene3D G3DSA:3.40.50.880 289 532 6.8E-101 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 SUPERFAMILY SSF52317 291 531 4.43E-82 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 Pfam PF00117 Glutamine amidotransferase class-I 302 527 2.6E-55 T 06-07-2017 IPR017926 Glutamine amidotransferase APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 Pfam PF06418 CTP synthase N-terminus 3 267 3.0E-127 T 06-07-2017 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 TIGRFAM TIGR00337 PyrG: CTP synthase 1 527 3.6E-258 T 06-07-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT55_RS24300 60388e4b6b15f5d41780884a26bad820 544 Gene3D G3DSA:3.40.50.300 1 284 1.6E-137 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15015 bd92bb19aaab1898bb8d35e9037ae750 225 Gene3D G3DSA:1.10.3680.10 7 152 6.6E-23 T 06-07-2017 IPR029024 TerB-like APT55_RS15015 bd92bb19aaab1898bb8d35e9037ae750 225 SUPERFAMILY SSF158682 7 153 1.07E-22 T 06-07-2017 IPR029024 TerB-like APT55_RS15015 bd92bb19aaab1898bb8d35e9037ae750 225 Pfam PF06967 Mo-dependent nitrogenase C-terminus 143 225 6.6E-45 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS26730 2049ebe23aa70d5ea9e3a28b351d3819 160 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 3 153 2.7E-52 T 06-07-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APT55_RS26730 2049ebe23aa70d5ea9e3a28b351d3819 160 Pfam PF04073 Aminoacyl-tRNA editing domain 29 144 3.1E-22 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS26730 2049ebe23aa70d5ea9e3a28b351d3819 160 Gene3D G3DSA:3.90.960.10 2 155 3.1E-46 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS26730 2049ebe23aa70d5ea9e3a28b351d3819 160 SUPERFAMILY SSF55826 3 150 8.5E-38 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS26730 2049ebe23aa70d5ea9e3a28b351d3819 160 PIRSF PIRSF006181 1 157 1.4E-50 T 06-07-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 149 1.3E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 180 280 2.0E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Gene3D G3DSA:3.20.20.450 459 709 9.2E-112 T 06-07-2017 IPR001633 EAL domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Gene3D G3DSA:3.30.450.20 180 273 1.1E-28 T 06-07-2017 APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Pfam PF00990 Diguanylate cyclase, GGDEF domain 284 440 2.9E-51 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 281 445 2.5E-41 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Gene3D G3DSA:3.30.70.270 285 454 3.7E-60 T 06-07-2017 APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Pfam PF13426 PAS domain 173 272 1.4E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SUPERFAMILY SSF55785 24 141 2.9E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Pfam PF00989 PAS fold 32 140 3.9E-10 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00091 30 97 2.1E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00091 151 225 0.68 T 06-07-2017 IPR000014 PAS domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SUPERFAMILY SSF141868 461 711 1.31E-94 T 06-07-2017 IPR001633 EAL domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00052 456 704 6.3E-128 T 06-07-2017 IPR001633 EAL domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00086 231 273 8.5E-10 T 06-07-2017 IPR001610 PAC motif APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00086 101 143 2.1E-6 T 06-07-2017 IPR001610 PAC motif APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SUPERFAMILY SSF55073 289 448 6.36E-50 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Pfam PF00563 EAL domain 462 699 1.6E-81 T 06-07-2017 IPR001633 EAL domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SMART SM00267 273 446 2.2E-68 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 Gene3D G3DSA:3.30.450.20 25 141 7.0E-19 T 06-07-2017 APT55_RS17270 3297e76ca7af57a3f19fe105ce6cd63d 721 SUPERFAMILY SSF55785 178 273 1.59E-24 T 06-07-2017 IPR000014 PAS domain APT55_RS23165 d0aec21f52375f653635303a588685fc 365 Gene3D G3DSA:3.40.50.880 7 175 2.8E-45 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS23165 d0aec21f52375f653635303a588685fc 365 SUPERFAMILY SSF47240 209 342 1.35E-8 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS23165 d0aec21f52375f653635303a588685fc 365 Pfam PF09537 Domain of unknown function (DUF2383) 208 290 1.8E-9 T 06-07-2017 IPR019052 Domain of unknown function DUF2383 APT55_RS23165 d0aec21f52375f653635303a588685fc 365 Pfam PF01965 DJ-1/PfpI family 8 172 2.1E-46 T 06-07-2017 IPR002818 DJ-1/PfpI APT55_RS23165 d0aec21f52375f653635303a588685fc 365 SUPERFAMILY SSF52317 7 174 6.59E-41 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS23165 d0aec21f52375f653635303a588685fc 365 Gene3D G3DSA:1.20.1260.10 202 346 6.3E-14 T 06-07-2017 IPR012347 Ferritin-related APT55_RS23165 d0aec21f52375f653635303a588685fc 365 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 174 1.1E-45 T 06-07-2017 IPR006286 Peptidase C56, PfpI APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 Pfam PF03466 LysR substrate binding domain 91 294 2.8E-51 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 SUPERFAMILY SSF46785 4 81 6.19E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 SUPERFAMILY SSF53850 93 298 7.03E-46 T 06-07-2017 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.7E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.7E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.7E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 Gene3D G3DSA:3.40.190.10 177 265 7.2E-24 T 06-07-2017 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 Gene3D G3DSA:3.40.190.10 93 176 8.5E-17 T 06-07-2017 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.4E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS05775 f0229e09546278d6eaca5b9dcb5a6853 317 Gene3D G3DSA:1.10.10.10 5 89 4.9E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 Pfam PF02130 Uncharacterized protein family UPF0054 43 157 1.3E-32 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 162 22.036 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 Gene3D G3DSA:3.40.390.30 13 160 7.5E-38 T 06-07-2017 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 128 138 - T 06-07-2017 IPR020549 Endoribonuclease YbeY, conserved site APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 49 158 1.4E-32 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT55_RS12590 a0902bf893de722d20a0a64201a9c6b6 164 SUPERFAMILY SSF55486 23 161 3.33E-37 T 06-07-2017 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 6 252 6.1E-90 T 06-07-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 107 136 3.6E-6 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 4 37 2.8E-6 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 SUPERFAMILY SSF51161 4 239 2.95E-68 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 177 259 3.5E-21 T 06-07-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 Gene3D G3DSA:2.160.10.10 4 191 4.2E-48 T 06-07-2017 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 24 52 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 Gene3D G3DSA:1.20.1180.10 197 260 1.3E-13 T 06-07-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 APT55_RS05860 0f82cb0def273a67dae4431ddd02f002 268 PIRSF PIRSF000456 2 265 2.7E-94 T 06-07-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 5 235 1.5E-99 T 06-07-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 3 236 46.007 T 06-07-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 PIRSF PIRSF005650 1 241 1.6E-99 T 06-07-2017 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 Gene3D G3DSA:3.40.1160.10 4 235 7.9E-89 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 SUPERFAMILY SSF53633 4 235 4.71E-75 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS09330 4b38e6c9be4b3ac97130575326d13c72 242 Pfam PF00696 Amino acid kinase family 7 215 2.4E-32 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS18400 57dff7ea75f46b866d898efdc0851db0 117 Pfam PF06868 Protein of unknown function (DUF1257) 21 106 1.3E-21 T 06-07-2017 IPR009666 Uncharacterised protein family Ycf35 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Pfam PF00391 PEP-utilising enzyme, mobile domain 353 424 4.3E-26 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Gene3D G3DSA:3.30.1490.20 5 190 5.3E-21 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 SUPERFAMILY SSF51621 447 712 8.11E-60 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 306 7.0E-21 T 06-07-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 SUPERFAMILY SSF56059 5 307 1.18E-18 T 06-07-2017 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 SUPERFAMILY SSF52009 322 428 1.31E-30 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Gene3D G3DSA:3.50.30.10 353 434 2.1E-29 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 448 707 2.9E-47 T 06-07-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 APT55_RS23450 6d78c098c835d9dae134dba3676b543a 721 Gene3D G3DSA:3.20.20.60 449 714 2.2E-60 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS23570 f3214a9572598513ba5a35c004af10bd 409 SUPERFAMILY SSF141571 279 337 1.1E-14 T 06-07-2017 APT55_RS23570 f3214a9572598513ba5a35c004af10bd 409 Pfam PF00805 Pentapeptide repeats (8 copies) 299 336 5.1E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Pfam PF08245 Mur ligase middle domain 491 701 3.6E-23 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Pfam PF08443 RimK-like ATP-grasp domain 217 324 3.2E-9 T 06-07-2017 IPR013651 ATP-grasp fold, RimK-type APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Gene3D G3DSA:3.90.190.20 729 854 8.3E-27 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 SUPERFAMILY SSF53244 727 854 7.14E-27 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Gene3D G3DSA:3.40.1190.10 485 720 3.9E-40 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 SUPERFAMILY SSF56059 219 330 9.55E-34 T 06-07-2017 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 SUPERFAMILY SSF56059 382 471 9.55E-34 T 06-07-2017 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Gene3D G3DSA:3.30.470.20 214 319 3.6E-18 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 2 870 0.0 T 06-07-2017 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Gene3D G3DSA:3.30.470.20 390 456 1.0E-4 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 SUPERFAMILY SSF53623 449 739 1.83E-41 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS08140 8898e159ac1fd55528621debe404d35a 900 Pfam PF02875 Mur ligase family, glutamate ligase domain 726 807 2.3E-13 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 18 344 9.4E-130 T 06-07-2017 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 Pfam PF00561 alpha/beta hydrolase fold 47 331 8.7E-46 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 4 347 41.629 T 06-07-2017 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 SUPERFAMILY SSF53474 5 344 1.51E-99 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 Gene3D G3DSA:3.40.50.1820 29 347 6.6E-41 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03080 cc16de05d1f4a68134ef5f7004c8b0c5 358 PIRSF PIRSF000443 2 355 5.9E-134 T 06-07-2017 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT55_RS11590 d8bc2934a2750afe3cdb2d9d48c9d4c0 66 Gene3D G3DSA:2.40.50.240 1 66 4.6E-28 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain APT55_RS11590 d8bc2934a2750afe3cdb2d9d48c9d4c0 66 Pfam PF06988 NifT/FixU protein 1 63 4.8E-27 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 APT55_RS11590 d8bc2934a2750afe3cdb2d9d48c9d4c0 66 SUPERFAMILY SSF159203 1 66 1.11E-20 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain APT55_RS11590 d8bc2934a2750afe3cdb2d9d48c9d4c0 66 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 66 8.6E-25 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:1.10.860.10 15 117 1.3E-31 T 06-07-2017 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:3.40.50.300 186 223 5.0E-94 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:3.40.50.300 649 867 5.0E-94 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 TIGRFAM TIGR01445 intein_Nterm: intein N-terminal splicing region 221 295 3.5E-6 T 06-07-2017 IPR006141 Intein N-terminal splicing region GO:0016539 Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:2.170.16.10 597 641 5.1E-57 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:2.170.16.10 224 340 5.1E-57 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:2.170.16.10 511 524 5.1E-57 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SUPERFAMILY SSF48024 13 124 5.36E-34 T 06-07-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Pfam PF03796 DnaB-like helicase C terminal domain 639 865 8.0E-96 T 06-07-2017 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Pfam PF03796 DnaB-like helicase C terminal domain 189 221 3.3E-10 T 06-07-2017 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 PRINTS PR00379 Intein signature 329 341 1.1E-22 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 PRINTS PR00379 Intein signature 464 479 1.1E-22 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 PRINTS PR00379 Intein signature 282 295 1.1E-22 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 PRINTS PR00379 Intein signature 618 635 1.1E-22 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 PRINTS PR00379 Intein signature 433 445 1.1E-22 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Pfam PF00772 DnaB-like helicase N terminal domain 15 115 3.7E-30 T 06-07-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 15 867 4.7E-199 T 06-07-2017 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Pfam PF14528 LAGLIDADG-like domain 433 514 3.2E-15 T 06-07-2017 IPR004860 Homing endonuclease, LAGLIDADG GO:0004519 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 621 642 5.0E-7 T 06-07-2017 IPR030934 Intein C-terminal splicing region APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SMART SM00305 602 647 1.4E-12 T 06-07-2017 IPR003586 Hint domain C-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SUPERFAMILY SSF52540 642 858 1.72E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SMART SM00306 219 315 7.5E-11 T 06-07-2017 IPR003587 Hint domain N-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SUPERFAMILY SSF51294 577 641 4.71E-47 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SUPERFAMILY SSF51294 220 340 4.71E-47 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Gene3D G3DSA:3.10.28.10 417 510 3.3E-20 T 06-07-2017 IPR027434 Homing endonuclease GO:0004519 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 SUPERFAMILY SSF55608 419 517 2.78E-13 T 06-07-2017 IPR027434 Homing endonuclease GO:0004519 APT55_RS01710 4065b7b18c465962fd560e9a0b0b5f78 875 Pfam PF14890 Intein splicing domain 225 641 7.7E-33 T 06-07-2017 APT55_RS19225 356e6589e6c6f027bb67958a2166eba5 276 SUPERFAMILY SSF53474 1 276 8.89E-86 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS19225 356e6589e6c6f027bb67958a2166eba5 276 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 3 276 1.9E-144 T 06-07-2017 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 APT55_RS19225 356e6589e6c6f027bb67958a2166eba5 276 Pfam PF00756 Putative esterase 23 271 9.0E-59 T 06-07-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 APT55_RS19225 356e6589e6c6f027bb67958a2166eba5 276 Gene3D G3DSA:3.40.50.1820 1 275 1.3E-78 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 TIGRFAM TIGR00277 HDIG: HDIG domain 567 666 7.8E-27 T 06-07-2017 IPR006675 HDIG domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 Pfam PF07698 7TM receptor with intracellular HD hydrolase 365 545 2.5E-27 T 06-07-2017 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 Pfam PF07697 7TM-HD extracellular 76 360 1.3E-42 T 06-07-2017 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 Gene3D G3DSA:1.10.3210.10 698 735 9.9E-16 T 06-07-2017 IPR006674 HD domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 Gene3D G3DSA:1.10.3210.10 566 666 9.9E-16 T 06-07-2017 IPR006674 HD domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 SUPERFAMILY SSF109604 693 718 1.49E-11 T 06-07-2017 APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 SUPERFAMILY SSF109604 567 666 1.49E-11 T 06-07-2017 APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 Pfam PF01966 HD domain 570 717 2.4E-17 T 06-07-2017 IPR006674 HD domain APT55_RS24210 0e13df7c653d21e85dddad69aadbe2f3 782 SMART SM00471 566 727 4.5E-10 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 SUPERFAMILY SSF56042 145 299 4.49E-27 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 12 318 4.4E-90 T 06-07-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 PIRSF PIRSF005303 3 318 2.4E-90 T 06-07-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 Gene3D G3DSA:3.30.1330.10 3 142 6.8E-45 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 Gene3D G3DSA:3.90.650.10 148 318 2.7E-43 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 Pfam PF00586 AIR synthase related protein, N-terminal domain 28 140 3.6E-25 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 SUPERFAMILY SSF55326 5 141 4.71E-35 T 06-07-2017 APT55_RS11080 e7ff0d4a64ddfb15c42e526f8b62c5c4 320 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 8 315 29.356 T 06-07-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 SUPERFAMILY SSF117892 77 213 8.37E-17 T 06-07-2017 IPR001107 Band 7 domain APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 132 150 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 155 171 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 178 197 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 226 242 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 89 105 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 PRINTS PR00679 Prohibitin signature 203 226 7.3E-24 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 SMART SM00244 45 208 4.4E-30 T 06-07-2017 IPR001107 Band 7 domain APT55_RS03065 7ae8737f0b759ac5c36f9296cf1115bf 295 Pfam PF01145 SPFH domain / Band 7 family 49 232 3.4E-32 T 06-07-2017 IPR001107 Band 7 domain APT55_RS30490 6fc1c2b0275c9e26bf4d1c4f545c2bca 197 Gene3D G3DSA:1.10.260.40 96 155 2.6E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS30490 6fc1c2b0275c9e26bf4d1c4f545c2bca 197 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 98 155 1.0E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 8 220 33.595 T 06-07-2017 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 Pfam PF01791 DeoC/LacD family aldolase 27 217 7.1E-14 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 Gene3D G3DSA:3.20.20.70 4 218 2.7E-81 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 10 215 1.6E-80 T 06-07-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 SMART SM01133 9 218 6.9E-86 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 PIRSF PIRSF001357 3 225 1.4E-77 T 06-07-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 APT55_RS12305 eb76c567f5978884a4688e37a5f66244 227 SUPERFAMILY SSF51569 3 218 1.36E-75 T 06-07-2017 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.3E-18 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 PRINTS PR01046 Prolyl-tRNA synthetase signature 137 145 1.3E-18 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 PRINTS PR01046 Prolyl-tRNA synthetase signature 107 118 1.3E-18 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 PRINTS PR01046 Prolyl-tRNA synthetase signature 147 158 1.3E-18 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Gene3D G3DSA:3.90.960.10 256 415 1.5E-11 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 594 6.8E-237 T 06-07-2017 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 97 486 1.3E-45 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 SUPERFAMILY SSF52954 492 598 1.15E-28 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Pfam PF03129 Anticodon binding domain 505 594 7.2E-20 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Gene3D G3DSA:3.30.930.10 10 237 2.6E-98 T 06-07-2017 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Gene3D G3DSA:3.30.930.10 416 498 2.6E-98 T 06-07-2017 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 597 38.515 T 06-07-2017 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Gene3D G3DSA:3.40.50.800 499 598 7.3E-26 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 SUPERFAMILY SSF55681 435 506 5.32E-98 T 06-07-2017 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 SUPERFAMILY SSF55681 10 240 5.32E-98 T 06-07-2017 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 SUPERFAMILY SSF55826 232 414 3.4E-10 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS26550 09fdc1de0ac069bc7188967760e64ebd 602 Pfam PF04073 Aminoacyl-tRNA editing domain 259 402 8.0E-12 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Pfam PF00873 AcrB/AcrD/AcrF family 189 640 1.9E-96 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Pfam PF00873 AcrB/AcrD/AcrF family 14 187 1.2E-31 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Gene3D G3DSA:3.30.70.1320 146 222 2.8E-13 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Pfam PF03176 MMPL family 671 858 8.4E-8 T 06-07-2017 IPR004869 Membrane transport protein, MMPL domain GO:0016020 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 SUPERFAMILY SSF82693 51 134 1.48E-13 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Gene3D G3DSA:3.30.70.1430 506 589 9.8E-6 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 SUPERFAMILY SSF82693 146 235 1.2E-14 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Gene3D G3DSA:1.20.1640.10 223 420 3.1E-58 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Gene3D G3DSA:3.30.70.1430 51 137 2.2E-16 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 SUPERFAMILY SSF82866 640 864 3.92E-51 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 Gene3D G3DSA:1.10.3850.10 645 859 1.5E-61 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 SUPERFAMILY SSF82693 506 591 1.57E-6 T 06-07-2017 APT55_RS24345 3ac23d54539291904cfd42b8921efe11 866 SUPERFAMILY SSF82866 214 414 2.49E-47 T 06-07-2017 APT55_RS05725 1daf1574d5ce0b58f8c5f87aaca091b6 113 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 61 4.0E-24 T 06-07-2017 APT55_RS05725 1daf1574d5ce0b58f8c5f87aaca091b6 113 SMART SM00877 3 81 1.1E-32 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS05725 1daf1574d5ce0b58f8c5f87aaca091b6 113 Pfam PF00936 BMC domain 4 81 1.6E-28 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS05725 1daf1574d5ce0b58f8c5f87aaca091b6 113 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 06-07-2017 IPR020808 Bacterial microcompartments protein, conserved site APT55_RS05725 1daf1574d5ce0b58f8c5f87aaca091b6 113 SUPERFAMILY SSF143414 4 100 4.84E-32 T 06-07-2017 APT55_RS21515 5e9a7a5e740f2113bd23190e670b0edb 184 Hamap MF_01459 Chromophore lyase CpcS/CpeS [cpcS]. 1 168 24.957 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS21515 5e9a7a5e740f2113bd23190e670b0edb 184 Gene3D G3DSA:2.40.128.20 1 174 4.1E-58 T 06-07-2017 IPR012674 Calycin APT55_RS21515 5e9a7a5e740f2113bd23190e670b0edb 184 Pfam PF09367 CpeS-like protein 2 167 3.8E-52 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 Hamap MF_01379 Photosystem II protein D1 [psbA]. 1 347 57.214 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 32 53 1.1E-7 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 197 223 1.1E-7 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 142 164 1.1E-7 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 SUPERFAMILY SSF81483 12 343 1.06E-139 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 TIGRFAM TIGR01151 psbA: photosystem II q(b) protein 1 359 1.3E-220 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 Pfam PF00124 Photosynthetic reaction centre protein 28 327 5.9E-97 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 191 217 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS05285 1f8c21470060d5b0b5dbc556e47a5669 360 Gene3D G3DSA:1.20.85.10 141 312 3.4E-77 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 06-07-2017 IPR013852 Translation elongation factor P/YeiP, conserved site APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 TIGRFAM TIGR00038 efp: translation elongation factor P 2 184 1.1E-76 T 06-07-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Gene3D G3DSA:2.30.30.30 1 63 3.4E-31 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 121 4.6E-21 T 06-07-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 SMART SM00841 129 184 2.0E-33 T 06-07-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 SUPERFAMILY SSF50104 1 62 1.14E-19 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Hamap MF_00141 Elongation factor P [efp]. 1 185 50.879 T 06-07-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 SUPERFAMILY SSF50249 65 129 4.71E-19 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 2.4E-25 T 06-07-2017 IPR013185 Translation elongation factor, KOW-like APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.6E-26 T 06-07-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 SUPERFAMILY SSF50249 129 184 2.74E-18 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 PIRSF PIRSF005901 1 186 5.4E-72 T 06-07-2017 IPR020599 Translation elongation factor P/YeiP APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Gene3D G3DSA:2.40.50.140 128 184 2.9E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 Gene3D G3DSA:2.40.50.140 65 127 3.6E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS18910 93cfe49d3a6b5c5954af50c4437f0f80 187 SMART SM01185 67 121 4.7E-24 T 06-07-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APT55_RS26810 f56c3347ae83fe03ed3a275dd62570e5 411 SMART SM00382 213 328 1.7E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS26810 f56c3347ae83fe03ed3a275dd62570e5 411 Pfam PF05673 Protein of unknown function (DUF815) 166 406 4.6E-96 T 06-07-2017 IPR008533 Domain of unknown function DUF815 APT55_RS26810 f56c3347ae83fe03ed3a275dd62570e5 411 Gene3D G3DSA:3.40.50.300 183 354 2.7E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26810 f56c3347ae83fe03ed3a275dd62570e5 411 SUPERFAMILY SSF52540 131 367 7.35E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00215 a0b2674b3e439ec8d29c76e37f5008ae 129 Gene3D G3DSA:3.10.180.10 2 129 1.6E-34 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS00215 a0b2674b3e439ec8d29c76e37f5008ae 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 1.6E-17 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS00215 a0b2674b3e439ec8d29c76e37f5008ae 129 SUPERFAMILY SSF54593 3 128 1.75E-31 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 156 214 4.8E-13 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SUPERFAMILY SSF47226 8 119 1.83E-23 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SUPERFAMILY SSF50341 402 534 1.96E-29 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:2.40.50.180 439 492 2.3E-11 T 06-07-2017 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:2.40.50.180 582 647 2.0E-6 T 06-07-2017 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SMART SM00387 260 403 1.8E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:1.10.287.560 156 216 7.1E-17 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SUPERFAMILY SSF47384 156 216 1.84E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SMART SM01231 155 215 3.0E-17 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:3.30.565.10 219 402 5.9E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:1.20.120.160 7 137 6.7E-29 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Pfam PF01627 Hpt domain 12 103 1.4E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SMART SM00073 8 105 3.6E-12 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:2.30.30.40 403 424 6.5E-20 T 06-07-2017 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Gene3D G3DSA:2.30.30.40 493 533 6.5E-20 T 06-07-2017 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 263 402 3.9E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SUPERFAMILY SSF55874 218 401 5.89E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SMART SM00260 395 537 3.2E-34 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Pfam PF01584 CheW-like domain 590 690 1.4E-7 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 Pfam PF01584 CheW-like domain 409 536 6.3E-23 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 319 3.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 3.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 381 3.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10300 fec4c7dffadbfc8b3984a5c9909874ce 703 SUPERFAMILY SSF50341 557 694 1.57E-9 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 06-07-2017 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 Pfam PF00137 ATP synthase subunit C 11 74 5.0E-18 T 06-07-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.2E-22 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.2E-22 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.2E-22 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 77 17.817 T 06-07-2017 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 SUPERFAMILY SSF81333 4 79 1.83E-21 T 06-07-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 7.2E-19 T 06-07-2017 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT55_RS08615 ac79fbd30e00e6de21daaae5865e56db 81 Gene3D G3DSA:1.20.20.10 4 78 9.4E-28 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 APT55_RS02140 7bc13d899df06998ceb3203b92d80304 60 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 8 55 6.1E-11 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS29345 c9dea702c691a3ffa2c89c0354cdb2c1 87 SMART SM00530 18 75 3.0E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS29345 c9dea702c691a3ffa2c89c0354cdb2c1 87 Gene3D G3DSA:1.10.260.40 9 78 6.9E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS29345 c9dea702c691a3ffa2c89c0354cdb2c1 87 SUPERFAMILY SSF47413 11 77 1.83E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS29345 c9dea702c691a3ffa2c89c0354cdb2c1 87 Pfam PF01381 Helix-turn-helix 19 57 1.9E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Gene3D G3DSA:3.40.440.10 194 264 2.4E-70 T 06-07-2017 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Gene3D G3DSA:3.40.440.10 3 93 2.4E-70 T 06-07-2017 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 SUPERFAMILY SSF52540 2 427 3.19E-174 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 446 214.229 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 SMART SM00788 3 422 7.0E-286 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 06-07-2017 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 06-07-2017 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Pfam PF00709 Adenylosuccinate synthetase 4 421 8.5E-180 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Gene3D G3DSA:1.10.300.10 101 193 7.6E-35 T 06-07-2017 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 Gene3D G3DSA:3.90.170.10 265 423 1.6E-69 T 06-07-2017 APT55_RS02030 5d75be47c10cf1194a051d935cb74eba 446 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 427 6.9E-167 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT55_RS02295 f7c8c5acbf5d22c7d3e43e11a630eaf4 388 Gene3D G3DSA:2.170.15.10 48 171 4.5E-15 T 06-07-2017 IPR023307 Aerolysin-like toxin, beta complex domain APT55_RS02295 f7c8c5acbf5d22c7d3e43e11a630eaf4 388 SUPERFAMILY SSF56973 42 177 4.19E-14 T 06-07-2017 APT55_RS02295 f7c8c5acbf5d22c7d3e43e11a630eaf4 388 Pfam PF03318 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 46 175 3.7E-7 T 06-07-2017 IPR004991 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 SUPERFAMILY SSF51649 149 475 8.38E-148 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 10 476 60.527 T 06-07-2017 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 Gene3D G3DSA:3.30.70.150 23 149 1.1E-72 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 25 145 3.3E-45 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 SUPERFAMILY SSF54966 11 150 5.63E-64 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 155 463 2.2E-131 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 197 205 - T 06-07-2017 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12420 a2582a7c95ff15f54f2b74960ba535c0 476 Gene3D G3DSA:3.20.20.110 150 463 4.9E-185 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS22000 dfcaa07efc8176740b9f2e2fe29cd7a4 287 SUPERFAMILY SSF103481 39 138 3.27E-14 T 06-07-2017 APT55_RS22000 dfcaa07efc8176740b9f2e2fe29cd7a4 287 Pfam PF00892 EamA-like transporter family 152 285 4.2E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS22000 dfcaa07efc8176740b9f2e2fe29cd7a4 287 Pfam PF00892 EamA-like transporter family 2 133 3.6E-15 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS22000 dfcaa07efc8176740b9f2e2fe29cd7a4 287 SUPERFAMILY SSF103481 190 286 7.45E-7 T 06-07-2017 APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Pfam PF00395 S-layer homology domain 401 438 7.6E-8 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Pfam PF00395 S-layer homology domain 343 384 1.3E-19 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Pfam PF00395 S-layer homology domain 463 508 2.9E-8 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Pfam PF07602 Protein of unknown function (DUF1565) 59 206 4.1E-34 T 06-07-2017 IPR011459 Domain of unknown function DUF1565 APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Pfam PF07602 Protein of unknown function (DUF1565) 208 326 4.6E-13 T 06-07-2017 IPR011459 Domain of unknown function DUF1565 APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 167 208 5.9E-5 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 189 232 8.9E-6 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 195 217 9.9 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 262 284 590.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 218 239 1300.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 240 261 78.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 172 194 42.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SMART SM00710 148 171 6100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 Gene3D G3DSA:2.160.20.10 41 401 7.3E-32 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SUPERFAMILY SSF51126 41 334 1.3E-38 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27390 c73890cd5293345baec732cfdb154c92 534 SUPERFAMILY SSF51126 373 400 1.3E-38 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 ProDom PD007559 HYDRATASE NITRILE ALPHA SUBUNIT LYASE CHAIN METAL-BINDING DIRECT SEQUENCING NITRILASE 12 196 5.0E-61 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 SUPERFAMILY SSF56209 6 200 1.22E-75 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 Gene3D G3DSA:3.90.330.10 6 200 1.9E-85 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 Pfam PF02979 Nitrile hydratase, alpha chain 11 196 6.7E-83 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 TIGRFAM TIGR01323 nitrile_alph: nitrile hydratase, alpha subunit 11 198 6.0E-91 T 06-07-2017 IPR018141 Nitrile hydratase, alpha subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07025 f7856b55e789512f64112e8d06de8bf7 202 PIRSF PIRSF001426 2 202 4.5E-84 T 06-07-2017 IPR023900 Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS12135 31b5fec150064998b90c5c6682695b90 156 SUPERFAMILY SSF52821 22 121 3.27E-22 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS12135 31b5fec150064998b90c5c6682695b90 156 Gene3D G3DSA:3.40.250.10 22 122 1.1E-21 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS12135 31b5fec150064998b90c5c6682695b90 156 SMART SM00450 24 120 5.4E-17 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS12135 31b5fec150064998b90c5c6682695b90 156 Pfam PF00581 Rhodanese-like domain 24 116 4.6E-16 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Gene3D G3DSA:1.10.287.130 442 511 6.5E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Gene3D G3DSA:3.30.565.10 516 674 3.4E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Gene3D G3DSA:3.30.450.20 293 435 3.8E-21 T 06-07-2017 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 SUPERFAMILY SSF55785 313 424 2.09E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 673 2.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Pfam PF00512 His Kinase A (phospho-acceptor) domain 449 515 9.6E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 SUPERFAMILY SSF55874 504 672 5.76E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 Pfam PF08447 PAS fold 335 415 4.0E-16 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 SMART SM00388 449 515 4.6E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 SUPERFAMILY SSF47384 433 516 4.71E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 616 626 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 651 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 612 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 671 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20485 54e03de7ae9a167281e6907a62dae442 686 SMART SM00387 561 674 5.2E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14810 05d68c75d0c0e0388d14b81ae7fe4513 541 Pfam PF09852 Predicted membrane protein (DUF2079) 40 518 7.7E-107 T 06-07-2017 IPR018650 Sulfolobus virus STSV1, Orf64 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.185 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 Pfam PF01632 Ribosomal protein L35 2 62 7.8E-19 T 06-07-2017 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 SUPERFAMILY SSF143034 2 64 4.58E-19 T 06-07-2017 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.6E-14 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.6E-14 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.6E-14 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.2E-21 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT55_RS17410 48a145fa1e1f1ad5dd5418a85fb7b59b 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 06-07-2017 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 141 692 1.8E-203 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 607 762 2.7E-87 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 344 436 2.7E-87 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 SUPERFAMILY SSF56003 125 761 3.79E-199 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 SUPERFAMILY SSF54665 3 125 2.49E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 160 266 2.3E-31 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 437 597 4.9E-55 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 SMART SM01008 17 124 4.5E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.90.1170.50 3 124 6.0E-35 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 17 123 1.8E-21 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 126 159 1.1E-25 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 Gene3D G3DSA:3.30.365.10 268 343 1.1E-25 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT55_RS21620 b452032a7346e9c3aaf26136c2254231 775 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 3 762 3.7E-304 T 06-07-2017 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 APT55_RS08085 2f3e90f3dfc78d26f6f5e3324f153398 212 Pfam PF09347 Domain of unknown function (DUF1989) 19 184 2.8E-65 T 06-07-2017 IPR018959 Domain of unknown function DUF1989 APT55_RS08085 2f3e90f3dfc78d26f6f5e3324f153398 212 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 14 210 3.1E-105 T 06-07-2017 IPR017791 Urea carboxylase-associated protein 1 APT55_RS14070 6f66451ae3c98dd5dc7e198a84ac0832 186 Gene3D G3DSA:3.40.50.1010 13 167 5.2E-50 T 06-07-2017 IPR029060 PIN domain-like APT55_RS14070 6f66451ae3c98dd5dc7e198a84ac0832 186 Pfam PF01936 NYN domain 16 164 1.6E-37 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS03950 b29352fbf09a4e0509c8b6498af709b8 125 Pfam PF00072 Response regulator receiver domain 9 120 1.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03950 b29352fbf09a4e0509c8b6498af709b8 125 SUPERFAMILY SSF52172 6 123 1.99E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03950 b29352fbf09a4e0509c8b6498af709b8 125 Gene3D G3DSA:3.40.50.2300 6 123 3.1E-37 T 06-07-2017 APT55_RS03950 b29352fbf09a4e0509c8b6498af709b8 125 SMART SM00448 7 120 2.6E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Pfam PF13432 Tetratricopeptide repeat 137 176 7.5E-6 T 06-07-2017 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 597 625 - T 06-07-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 SUPERFAMILY SSF53955 575 723 2.29E-42 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Gene3D G3DSA:1.25.40.10 241 262 7.2E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Gene3D G3DSA:1.25.40.10 98 201 7.2E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Pfam PF13174 Tetratricopeptide repeat 417 446 0.027 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Pfam PF01464 Transglycosylase SLT domain 579 692 8.6E-31 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Gene3D G3DSA:1.25.40.10 295 468 1.1E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 Gene3D G3DSA:1.10.530.10 572 725 4.0E-46 T 06-07-2017 APT55_RS10075 61ed8f9e343872643b1f2dce006554e0 735 SUPERFAMILY SSF48435 94 531 6.28E-19 T 06-07-2017 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 APT55_RS25805 9e6297f45d8d4d0af5bbc183ba7df275 86 Gene3D G3DSA:1.10.260.40 3 55 1.4E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS25805 9e6297f45d8d4d0af5bbc183ba7df275 86 SUPERFAMILY SSF47413 4 39 1.08E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS16775 58f0c7b675a604357703b0ffe9d3908e 256 SMART SM00287 93 156 1.3E-5 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS16775 58f0c7b675a604357703b0ffe9d3908e 256 Pfam PF08239 Bacterial SH3 domain 103 150 1.7E-11 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS06100 905c1e0b272d7f495772f61d9abf7a6c 96 SUPERFAMILY SSF47413 24 90 1.54E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06100 905c1e0b272d7f495772f61d9abf7a6c 96 Gene3D G3DSA:1.10.260.40 28 91 7.4E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06100 905c1e0b272d7f495772f61d9abf7a6c 96 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 33 93 2.0E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06100 905c1e0b272d7f495772f61d9abf7a6c 96 SMART SM00530 33 89 4.7E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS17215 f58019715b708708eba878d6deef447a 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 307 4.5E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17215 f58019715b708708eba878d6deef447a 465 Gene3D G3DSA:3.30.565.10 293 461 1.1E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17215 f58019715b708708eba878d6deef447a 465 SUPERFAMILY SSF47384 224 308 1.18E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17215 f58019715b708708eba878d6deef447a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 2.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17215 f58019715b708708eba878d6deef447a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 2.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17215 f58019715b708708eba878d6deef447a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 2.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17215 f58019715b708708eba878d6deef447a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 2.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS17215 f58019715b708708eba878d6deef447a 465 SMART SM00304 187 240 1.3E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS17215 f58019715b708708eba878d6deef447a 465 Gene3D G3DSA:1.10.287.130 231 292 1.7E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17215 f58019715b708708eba878d6deef447a 465 SUPERFAMILY SSF55874 297 460 4.71E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17215 f58019715b708708eba878d6deef447a 465 Pfam PF00672 HAMP domain 168 237 1.6E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS17215 f58019715b708708eba878d6deef447a 465 SMART SM00387 350 462 1.9E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS17215 f58019715b708708eba878d6deef447a 465 SMART SM00388 241 307 1.3E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17215 f58019715b708708eba878d6deef447a 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 461 3.1E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 SUPERFAMILY SSF53474 9 280 7.43E-65 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00412 Epoxide hydrolase signature 112 125 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00412 Epoxide hydrolase signature 256 278 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00412 Epoxide hydrolase signature 35 53 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 Gene3D G3DSA:3.40.50.1820 8 280 2.0E-66 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 Pfam PF12697 Alpha/beta hydrolase family 31 273 1.7E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 5.5E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 5.5E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 224 238 5.5E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS04780 dbb3063f24a16934f3c9dae1e817d4ac 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 5.5E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS29385 39f08036efe996579e76ebadfd6d9793 328 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 23 105 3.2E-7 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS29385 39f08036efe996579e76ebadfd6d9793 328 SUPERFAMILY SSF56349 133 314 5.3E-37 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS29385 39f08036efe996579e76ebadfd6d9793 328 Gene3D G3DSA:1.10.443.10 134 307 1.6E-33 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS29385 39f08036efe996579e76ebadfd6d9793 328 Gene3D G3DSA:1.10.150.130 28 108 1.5E-8 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS29385 39f08036efe996579e76ebadfd6d9793 328 Pfam PF00589 Phage integrase family 133 304 2.5E-22 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS11425 74d3fc4491ff51dda230683a9bd6b796 318 Gene3D G3DSA:1.10.3720.10 32 312 2.5E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11425 74d3fc4491ff51dda230683a9bd6b796 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 312 4.2E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11425 74d3fc4491ff51dda230683a9bd6b796 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 24 312 2.9E-89 T 06-07-2017 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 APT55_RS11425 74d3fc4491ff51dda230683a9bd6b796 318 SUPERFAMILY SSF161098 33 307 1.85E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12765 87beada8dc09358962cef4a78866e5c4 372 Gene3D G3DSA:3.40.50.2000 158 334 1.5E-28 T 06-07-2017 APT55_RS12765 87beada8dc09358962cef4a78866e5c4 372 SUPERFAMILY SSF53756 5 359 4.89E-72 T 06-07-2017 APT55_RS12765 87beada8dc09358962cef4a78866e5c4 372 Pfam PF00534 Glycosyl transferases group 1 194 336 1.5E-36 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12765 87beada8dc09358962cef4a78866e5c4 372 Pfam PF13439 Glycosyltransferase Family 4 14 171 4.3E-14 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 Gene3D G3DSA:3.40.800.20 3 284 1.5E-69 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 Pfam PF00850 Histone deacetylase domain 45 281 2.4E-51 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 SUPERFAMILY SSF52768 1 288 2.64E-84 T 06-07-2017 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 PRINTS PR01270 Histone deacetylase superfamily signature 151 166 2.3E-15 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 PRINTS PR01270 Histone deacetylase superfamily signature 117 140 2.3E-15 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS29120 13cb23536e80a15d59b839a8f597cba2 305 PRINTS PR01270 Histone deacetylase superfamily signature 225 235 2.3E-15 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.2E-42 T 06-07-2017 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 422 8.8E-148 T 06-07-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 Gene3D G3DSA:3.40.50.720 163 313 3.0E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 419 28.813 T 06-07-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 06-07-2017 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 321 421 1.4E-27 T 06-07-2017 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 SUPERFAMILY SSF51735 160 316 1.05E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 SUPERFAMILY SSF69075 319 422 3.79E-28 T 06-07-2017 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 SUPERFAMILY SSF69742 1 158 4.45E-45 T 06-07-2017 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 307 4.0E-44 T 06-07-2017 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APT55_RS11245 da5995771109b5d19b4372cf653b3f57 428 PIRSF PIRSF000445 1 427 2.1E-146 T 06-07-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 Gene3D G3DSA:3.80.10.10 87 197 5.6E-4 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 SUPERFAMILY SSF141571 13 157 1.77E-41 T 06-07-2017 APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 Pfam PF00805 Pentapeptide repeats (8 copies) 37 70 1.3E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 Pfam PF00805 Pentapeptide repeats (8 copies) 131 170 7.3E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 Pfam PF00805 Pentapeptide repeats (8 copies) 71 110 1.9E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22515 2c2388e055584bc4fe62bf2937c36750 219 Pfam PF00805 Pentapeptide repeats (8 copies) 171 206 5.6E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 SUPERFAMILY SSF63380 92 197 3.06E-31 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 Pfam PF00677 Lumazine binding domain 99 185 5.5E-23 T 06-07-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 Pfam PF00677 Lumazine binding domain 3 85 6.3E-18 T 06-07-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 PIRSF PIRSF000498 1 214 2.4E-61 T 06-07-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 198 4.0E-67 T 06-07-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 Gene3D G3DSA:2.40.30.20 18 103 3.2E-25 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 Gene3D G3DSA:2.40.30.20 104 196 1.4E-28 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS07575 6dbfcc61d8346a3e0968ded1658ca314 220 SUPERFAMILY SSF63380 2 90 6.38E-17 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS08335 967df5d5ff975ad2e6fae7022a0f4ff9 348 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 202 301 9.9E-30 T 06-07-2017 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 APT55_RS08335 967df5d5ff975ad2e6fae7022a0f4ff9 348 Pfam PF08486 Stage II sporulation protein 198 287 1.4E-23 T 06-07-2017 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal APT55_RS08335 967df5d5ff975ad2e6fae7022a0f4ff9 348 ProDom PD191273 TC0311 EXPORTED CT041 CPN0389/CP0366/CPJ0389/CPB0400 107 348 6.0E-5 T 06-07-2017 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Gene3D G3DSA:3.30.1360.10 14 59 2.2E-39 T 06-07-2017 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Gene3D G3DSA:3.30.1360.10 181 233 2.2E-39 T 06-07-2017 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 SUPERFAMILY SSF47789 255 311 4.84E-21 T 06-07-2017 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 SUPERFAMILY SSF56553 61 181 3.79E-39 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 249 310 1.1E-25 T 06-07-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 71 161 2.8E-20 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 257 320 3.0E-24 T 06-07-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 12 319 35.658 T 06-07-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Gene3D G3DSA:1.10.150.20 254 311 6.3E-27 T 06-07-2017 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Gene3D G3DSA:2.170.120.12 61 180 4.2E-41 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 SUPERFAMILY SSF55257 14 61 5.0E-32 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 SUPERFAMILY SSF55257 182 236 5.0E-32 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 37 230 2.1E-23 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 SMART SM00662 31 237 6.5E-78 T 06-07-2017 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09165 a330ed2910e5dabbfec97a142e2f172f 323 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 31 317 7.7E-104 T 06-07-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS09130 6bebcde01a874bd0ee954f60d4e3e62e 207 Pfam PF02570 Precorrin-8X methylmutase 8 195 9.9E-62 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS09130 6bebcde01a874bd0ee954f60d4e3e62e 207 Gene3D G3DSA:3.40.50.10230 2 201 1.8E-63 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS09130 6bebcde01a874bd0ee954f60d4e3e62e 207 SUPERFAMILY SSF63965 2 198 1.96E-57 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS25970 8802ff9c2043c1dc910f1ac3defe8752 729 Pfam PF01435 Peptidase family M48 269 508 3.3E-15 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS25970 8802ff9c2043c1dc910f1ac3defe8752 729 Gene3D G3DSA:1.25.40.10 15 87 9.7E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25970 8802ff9c2043c1dc910f1ac3defe8752 729 Gene3D G3DSA:3.30.2010.10 260 341 2.5E-17 T 06-07-2017 APT55_RS30820 c37f8ab3ad25bba2cd1677f12e6b070d 144 SUPERFAMILY SSF143422 1 130 1.57E-44 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30820 c37f8ab3ad25bba2cd1677f12e6b070d 144 Gene3D G3DSA:3.30.70.1290 1 132 5.4E-49 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30820 c37f8ab3ad25bba2cd1677f12e6b070d 144 Pfam PF01797 Transposase IS200 like 12 129 1.3E-38 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30820 c37f8ab3ad25bba2cd1677f12e6b070d 144 SMART SM01321 11 129 4.4E-40 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30065 c37f8ab3ad25bba2cd1677f12e6b070d 144 SUPERFAMILY SSF143422 1 130 1.57E-44 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30065 c37f8ab3ad25bba2cd1677f12e6b070d 144 Gene3D G3DSA:3.30.70.1290 1 132 5.4E-49 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30065 c37f8ab3ad25bba2cd1677f12e6b070d 144 Pfam PF01797 Transposase IS200 like 12 129 1.3E-38 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30065 c37f8ab3ad25bba2cd1677f12e6b070d 144 SMART SM01321 11 129 4.4E-40 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS15040 c37f8ab3ad25bba2cd1677f12e6b070d 144 SUPERFAMILY SSF143422 1 130 1.57E-44 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS15040 c37f8ab3ad25bba2cd1677f12e6b070d 144 Gene3D G3DSA:3.30.70.1290 1 132 5.4E-49 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS15040 c37f8ab3ad25bba2cd1677f12e6b070d 144 Pfam PF01797 Transposase IS200 like 12 129 1.3E-38 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS15040 c37f8ab3ad25bba2cd1677f12e6b070d 144 SMART SM01321 11 129 4.4E-40 T 06-07-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 Pfam PF03099 Biotin/lipoate A/B protein ligase family 61 158 4.0E-9 T 06-07-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 76 129 1.0E-19 T 06-07-2017 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 Hamap MF_00013 Octanoyltransferase [lipB]. 3 207 34.925 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 PIRSF PIRSF016262 1 216 3.7E-61 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 72 87 - T 06-07-2017 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 29 204 1.5E-62 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 SUPERFAMILY SSF55681 3 207 1.57E-64 T 06-07-2017 APT55_RS22615 00d537bd984475332c2294c0c585cfbf 218 Gene3D G3DSA:3.90.1550.10 3 205 3.3E-76 T 06-07-2017 APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 SUPERFAMILY SSF51161 251 444 2.78E-46 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 449 38.644 T 06-07-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 4.6E-9 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 266 297 0.0011 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 425 4.8E-6 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Gene3D G3DSA:3.90.550.10 2 242 3.3E-66 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 SUPERFAMILY SSF53448 1 250 2.91E-58 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 3 450 2.3E-168 T 06-07-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Pfam PF12804 MobA-like NTP transferase domain 5 131 1.4E-18 T 06-07-2017 IPR025877 MobA-like NTP transferase APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Gene3D G3DSA:2.160.10.10 243 330 4.7E-19 T 06-07-2017 APT55_RS16210 e5eb112cb2e7e6779ab8709f9ca2ef86 451 Gene3D G3DSA:2.160.10.10 331 448 6.2E-30 T 06-07-2017 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 SUPERFAMILY SSF53244 310 449 1.97E-36 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Pfam PF08245 Mur ligase middle domain 110 291 3.6E-27 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Gene3D G3DSA:3.40.50.720 3 90 4.2E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 SUPERFAMILY SSF53623 68 324 1.07E-50 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 2 452 32.41 T 06-07-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Gene3D G3DSA:3.90.190.20 312 448 3.3E-40 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 4 449 3.0E-121 T 06-07-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 378 7.4E-7 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 Gene3D G3DSA:3.40.1190.10 93 310 2.6E-56 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS16730 efbfbde1096c4ddf62bd2de6de7894f3 454 SUPERFAMILY SSF51984 3 92 1.96E-16 T 06-07-2017 APT55_RS26090 479dd262f093c0872bb83ce455d09bda 319 Pfam PF01435 Peptidase family M48 61 266 2.8E-27 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS26090 479dd262f093c0872bb83ce455d09bda 319 Gene3D G3DSA:3.30.2010.10 55 140 5.2E-21 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1292 1307 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:1.10.1200.10 1273 1334 3.0E-29 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF47336 1262 1370 1.57E-22 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF52777 1359 1536 2.22E-52 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:3.40.50.150 967 1155 1.0E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:2.30.38.10 776 855 3.6E-30 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:3.40.50.980 623 775 5.1E-36 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SMART SM00823 Phosphopantetheine attachment site 1268 1337 5.2E-7 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF52777 12 189 4.22E-49 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF13745 HxxPF-repeated domain 1676 1766 1.3E-34 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 492 889 1.3E-139 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF00501 AMP-binding enzyme 471 865 1.5E-103 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF00550 Phosphopantetheine attachment site 1271 1332 1.7E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF00668 Condensation domain 1356 1654 2.0E-77 T 06-07-2017 IPR001242 Condensation domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF00668 Condensation domain 7 308 9.6E-72 T 06-07-2017 IPR001242 Condensation domain APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF52777 190 435 1.26E-56 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:3.40.50.980 465 622 2.7E-61 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF52777 1543 1783 2.0E-69 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Pfam PF08242 Methyltransferase domain 986 1086 4.6E-14 T 06-07-2017 IPR013217 Methyltransferase type 12 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF53335 954 1166 1.06E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF56801 1204 1281 2.75E-164 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 SUPERFAMILY SSF56801 429 919 2.75E-164 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:3.30.300.30 860 916 9.4E-44 T 06-07-2017 APT55_RS30725 7ce33886eb987d7e7e18fcdfed9df220 1828 Gene3D G3DSA:3.30.300.30 1209 1272 9.4E-44 T 06-07-2017 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 PRINTS PR01011 Glutathione peroxidase family signature 27 44 3.7E-20 T 06-07-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 PRINTS PR01011 Glutathione peroxidase family signature 62 78 3.7E-20 T 06-07-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 PRINTS PR01011 Glutathione peroxidase family signature 128 137 3.7E-20 T 06-07-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 Gene3D G3DSA:3.40.30.10 8 164 1.7E-75 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 ProSitePatterns PS00460 Glutathione peroxidases active site. 29 44 - T 06-07-2017 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 SUPERFAMILY SSF52833 8 164 2.53E-65 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 PIRSF PIRSF000303 1 164 3.3E-68 T 06-07-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 Pfam PF00255 Glutathione peroxidase 9 115 1.9E-43 T 06-07-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT55_RS17550 de7d5c2cb2f8013550785fe77eb41d48 164 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 65 72 - T 06-07-2017 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 APT55_RS21140 e4ae44381df30d2208a34a85914536c6 347 Pfam PF12697 Alpha/beta hydrolase family 52 258 4.1E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21140 e4ae44381df30d2208a34a85914536c6 347 SUPERFAMILY SSF53474 39 248 7.49E-24 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS21140 e4ae44381df30d2208a34a85914536c6 347 Gene3D G3DSA:3.40.50.1820 34 243 1.1E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS05010 067d509a93cc3b872a01a0ab2572773e 375 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 90 111 5.0E-6 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT55_RS05010 067d509a93cc3b872a01a0ab2572773e 375 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 245 268 5.0E-6 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT55_RS05010 067d509a93cc3b872a01a0ab2572773e 375 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 159 177 5.0E-6 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT55_RS05010 067d509a93cc3b872a01a0ab2572773e 375 Pfam PF01594 Domain of unknown function DUF20 28 346 2.0E-62 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 SUPERFAMILY SSF75625 3 261 1.57E-82 T 06-07-2017 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Gene3D G3DSA:1.10.10.200 1 79 2.7E-33 T 06-07-2017 IPR017856 Integrase, N-terminal zinc-binding domain-like APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Gene3D G3DSA:3.30.1270.10 229 261 5.6E-36 T 06-07-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Gene3D G3DSA:3.30.1270.10 84 135 5.6E-36 T 06-07-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 256 33.504 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 254 8.1E-87 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Gene3D G3DSA:3.30.70.980 136 221 2.5E-19 T 06-07-2017 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS04605 e3d41be590b8605ce4f274b54ada62d0 265 Pfam PF01709 Transcriptional regulator 5 254 8.7E-87 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 28 218 44.181 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 Pfam PF00574 Clp protease 38 217 5.1E-87 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 27 217 7.4E-106 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 SUPERFAMILY SSF52096 36 218 3.32E-72 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 115 126 - T 06-07-2017 IPR018215 ClpP, Ser active site APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 PRINTS PR00127 Clp protease catalytic subunit P signature 84 104 9.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 PRINTS PR00127 Clp protease catalytic subunit P signature 136 155 9.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 PRINTS PR00127 Clp protease catalytic subunit P signature 115 132 9.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 PRINTS PR00127 Clp protease catalytic subunit P signature 193 212 9.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 PRINTS PR00127 Clp protease catalytic subunit P signature 44 59 9.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 Gene3D G3DSA:3.90.226.10 28 217 5.1E-91 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16675 d9e5354f16f9b89e5dd87575e8a728af 231 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 137 150 - T 06-07-2017 IPR033135 ClpP, histidine active site APT55_RS23455 6d5e8fe40b2d4bc8086614d51cb146e3 290 Gene3D G3DSA:1.10.3720.10 81 286 1.4E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS23455 6d5e8fe40b2d4bc8086614d51cb146e3 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 290 1.1E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS23455 6d5e8fe40b2d4bc8086614d51cb146e3 290 SUPERFAMILY SSF161098 84 272 9.81E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 231 263 - T 06-07-2017 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PIRSF PIRSF000099 2 432 7.0E-169 T 06-07-2017 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 SUPERFAMILY SSF53720 29 429 8.63E-82 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 Pfam PF00815 Histidinol dehydrogenase 27 428 4.7E-169 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 428 3.8E-163 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 429 41.62 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 Gene3D G3DSA:3.40.50.1980 31 241 1.3E-77 T 06-07-2017 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 231 252 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 322 347 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 202 227 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 172 198 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 363 381 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS00160 d57593384e768404ced065bbec62abaf 437 PRINTS PR00083 Histidinol dehydrogenase signature 253 272 2.3E-88 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT55_RS27930 73e32b8c6aa07ebddd8582d0890d4c6c 191 SUPERFAMILY SSF51161 35 178 5.96E-33 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS27930 73e32b8c6aa07ebddd8582d0890d4c6c 191 Gene3D G3DSA:2.160.10.10 36 181 1.8E-35 T 06-07-2017 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SMART SM00283 213 467 1.5E-55 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SUPERFAMILY SSF58104 36 209 6.54E-6 T 06-07-2017 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SUPERFAMILY SSF58104 173 466 1.23E-60 T 06-07-2017 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 340 369 1.2E-20 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 230 259 1.2E-20 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 311 338 1.2E-20 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SMART SM00304 56 113 2.7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SMART SM00304 394 464 110.0 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 SMART SM00304 153 205 2.7E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 Gene3D G3DSA:1.10.287.950 228 436 6.4E-47 T 06-07-2017 APT55_RS10310 c08be614b117a9241ce27662bffb6d44 471 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 269 466 5.7E-38 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Pfam PF00465 Iron-containing alcohol dehydrogenase 459 852 6.2E-116 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Gene3D G3DSA:3.40.50.1970 452 643 8.4E-60 T 06-07-2017 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 PIRSF PIRSF000111 1 865 0.0 T 06-07-2017 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00592+1.1.1.1|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00650+1.2.1.10|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7085|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7180|MetaCyc: PWY-7396 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Gene3D G3DSA:1.20.1090.10 644 862 2.1E-72 T 06-07-2017 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Gene3D G3DSA:3.40.605.10 7 206 3.7E-25 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 SUPERFAMILY SSF56796 450 864 3.01E-123 T 06-07-2017 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Gene3D G3DSA:3.40.309.10 216 283 1.9E-25 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Gene3D G3DSA:3.40.309.10 320 405 1.9E-25 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 Pfam PF00171 Aldehyde dehydrogenase family 6 271 2.8E-24 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APT55_RS11765 d0b8d995006aa75495f88da0553f6347 879 SUPERFAMILY SSF53720 8 455 5.76E-83 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 SUPERFAMILY SSF51905 387 450 2.28E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 SUPERFAMILY SSF51905 246 255 2.28E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 SUPERFAMILY SSF51905 5 168 2.28E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 Gene3D G3DSA:3.50.50.60 221 227 4.5E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 Gene3D G3DSA:3.50.50.60 5 155 4.5E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 Gene3D G3DSA:3.50.50.60 396 461 4.5E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15025 49579710740347eb01ed182a5dea70e6 604 Pfam PF12831 FAD dependent oxidoreductase 7 468 4.2E-112 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 254 4.1E-128 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 Pfam PF00005 ABC transporter 25 166 3.8E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 Gene3D G3DSA:3.40.190.10 376 503 6.5E-11 T 06-07-2017 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 Gene3D G3DSA:3.40.50.300 4 217 9.7E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 SUPERFAMILY SSF53850 278 513 1.69E-30 T 06-07-2017 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 Pfam PF13379 NMT1-like family 277 524 2.9E-79 T 06-07-2017 APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 SUPERFAMILY SSF52540 5 241 4.09E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08355 cca064c40e280c4774a88e0ffe837bf2 666 SMART SM00382 34 216 7.8E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03545 933bdcb5787f20f73c59a62937e788e1 420 SUPERFAMILY SSF103473 12 408 2.62E-27 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS03545 933bdcb5787f20f73c59a62937e788e1 420 Gene3D G3DSA:1.20.1250.20 219 410 2.5E-13 T 06-07-2017 APT55_RS03545 933bdcb5787f20f73c59a62937e788e1 420 Gene3D G3DSA:1.20.1250.20 12 200 3.7E-10 T 06-07-2017 APT55_RS03545 933bdcb5787f20f73c59a62937e788e1 420 Pfam PF07690 Major Facilitator Superfamily 17 334 7.5E-10 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS03350 beb1e7c81680547e960f23cf3abb2a37 376 SUPERFAMILY SSF53383 2 371 6.75E-68 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03350 beb1e7c81680547e960f23cf3abb2a37 376 Pfam PF00266 Aminotransferase class-V 20 338 2.3E-33 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS03350 beb1e7c81680547e960f23cf3abb2a37 376 Gene3D G3DSA:3.40.640.10 26 269 3.3E-56 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS28880 b3a7027ca3a4d77b3d7d9a166def8e69 501 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 304 479 8.4E-34 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS28880 b3a7027ca3a4d77b3d7d9a166def8e69 501 Pfam PF11845 Protein of unknown function (DUF3365) 26 205 4.7E-21 T 06-07-2017 IPR021796 Protein of unknown function DUF3365 APT55_RS28880 b3a7027ca3a4d77b3d7d9a166def8e69 501 SMART SM00044 240 467 5.3E-18 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS28880 b3a7027ca3a4d77b3d7d9a166def8e69 501 Gene3D G3DSA:3.30.70.1230 303 483 7.9E-47 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS28880 b3a7027ca3a4d77b3d7d9a166def8e69 501 SUPERFAMILY SSF55073 299 485 5.34E-57 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 ProSitePatterns PS00893 Nudix box signature. 50 71 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 PRINTS PR00502 NUDIX hydrolase family signature 59 74 1.5E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 PRINTS PR00502 NUDIX hydrolase family signature 45 59 1.5E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 SUPERFAMILY SSF55811 16 145 1.22E-28 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 Pfam PF00293 NUDIX domain 22 140 8.3E-20 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 APT55_RS26425 fcee4f7952aca0e08f9384c265942b6b 151 Gene3D G3DSA:3.90.79.10 19 144 2.8E-29 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 Gene3D G3DSA:3.40.1670.10 337 452 2.0E-42 T 06-07-2017 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 5 453 9.5E-171 T 06-07-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 9 427 3.4E-143 T 06-07-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 SUPERFAMILY SSF143968 321 485 2.09E-57 T 06-07-2017 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 Gene3D G3DSA:1.20.5.570 453 500 6.7E-16 T 06-07-2017 APT55_RS13560 f3b817190059e46e9ea21eaf7930db74 504 SUPERFAMILY SSF50475 3 320 1.45E-104 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS25980 618717e5118921015c3adcfba4fb104c 151 Gene3D G3DSA:3.30.70.330 4 86 1.1E-21 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS25980 618717e5118921015c3adcfba4fb104c 151 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 75 1.7E-17 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS25980 618717e5118921015c3adcfba4fb104c 151 SUPERFAMILY SSF54928 4 86 8.73E-23 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS25980 618717e5118921015c3adcfba4fb104c 151 SMART SM00360 4 77 6.2E-19 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS07000 dc837d7ab16726fe78b284a672fcc053 129 TIGRFAM TIGR02588 TIGR02588: TIGR02588 family protein 8 129 5.6E-45 T 06-07-2017 IPR013417 Conserved hypothetical protein CHP02588 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 Gene3D G3DSA:3.90.640.10 186 259 2.8E-28 T 06-07-2017 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 131 150 8.6E-57 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 48 66 8.6E-57 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 300 326 8.6E-57 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 68 91 8.6E-57 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 186 206 8.6E-57 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 Gene3D G3DSA:3.30.420.40 10 158 4.4E-47 T 06-07-2017 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 Pfam PF06723 MreB/Mbl protein 11 336 1.0E-147 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 336 5.6E-149 T 06-07-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 Gene3D G3DSA:3.30.420.40 159 185 2.9E-31 T 06-07-2017 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 Gene3D G3DSA:3.30.420.40 263 317 2.9E-31 T 06-07-2017 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 SUPERFAMILY SSF53067 149 330 1.08E-45 T 06-07-2017 APT55_RS20150 c3c4b1882b13ae975f499889d17ef1d8 345 SUPERFAMILY SSF53067 10 147 7.42E-42 T 06-07-2017 APT55_RS27875 d6cc9334485d4f193376f0e72d6c7e8c 425 SUPERFAMILY SSF53756 103 389 3.92E-18 T 06-07-2017 APT55_RS27875 d6cc9334485d4f193376f0e72d6c7e8c 425 Gene3D G3DSA:3.40.50.2000 228 389 2.4E-6 T 06-07-2017 APT55_RS27875 d6cc9334485d4f193376f0e72d6c7e8c 425 Pfam PF00534 Glycosyl transferases group 1 231 391 9.4E-12 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.8E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.8E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.8E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 6.8E-25 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 SUPERFAMILY SSF46785 1 85 1.22E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 Gene3D G3DSA:3.40.190.10 89 176 5.2E-33 T 06-07-2017 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 Pfam PF03466 LysR substrate binding domain 89 290 2.0E-45 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 Gene3D G3DSA:3.40.190.10 177 267 4.2E-39 T 06-07-2017 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 SUPERFAMILY SSF53850 90 293 7.24E-42 T 06-07-2017 APT55_RS13655 32b607efae7f36fa9b2ab0d58bb63d9e 301 Gene3D G3DSA:1.10.10.10 1 80 6.4E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 Gene3D G3DSA:3.40.190.10 202 265 1.9E-13 T 06-07-2017 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 Pfam PF03466 LysR substrate binding domain 96 296 5.0E-32 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 SUPERFAMILY SSF53850 98 297 2.44E-30 T 06-07-2017 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 3.1E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 Gene3D G3DSA:1.10.10.10 8 87 4.2E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 Gene3D G3DSA:3.40.190.10 88 201 1.5E-17 T 06-07-2017 APT55_RS07045 eebf60a0b984c342349a3ddd7529cc96 309 SUPERFAMILY SSF46785 7 119 1.67E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07625 0e27388c1ad75f108f835d1a5085b14f 593 PIRSF PIRSF002741 1 592 7.0E-88 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT55_RS07625 0e27388c1ad75f108f835d1a5085b14f 593 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 494 5.2E-81 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain APT55_RS07625 0e27388c1ad75f108f835d1a5085b14f 593 Gene3D G3DSA:3.10.105.10 309 559 3.9E-49 T 06-07-2017 APT55_RS07625 0e27388c1ad75f108f835d1a5085b14f 593 SUPERFAMILY SSF53850 37 587 1.25E-115 T 06-07-2017 APT55_RS07625 0e27388c1ad75f108f835d1a5085b14f 593 Gene3D G3DSA:3.90.76.10 45 218 1.0E-32 T 06-07-2017 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Gene3D G3DSA:1.25.40.10 288 351 2.0E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SUPERFAMILY SSF48452 321 421 1.52E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SUPERFAMILY SSF48452 19 354 5.88E-75 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF13181 Tetratricopeptide repeat 384 414 0.013 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Gene3D G3DSA:1.25.40.10 352 435 5.8E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Gene3D G3DSA:1.25.40.10 9 91 1.8E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF13432 Tetratricopeptide repeat 183 246 2.2E-12 T 06-07-2017 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF13432 Tetratricopeptide repeat 13 68 1.9E-8 T 06-07-2017 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 179 212 1.2E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 383 416 0.079 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 43 76 4.8E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 111 144 4.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 77 110 5.5E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 9 42 2.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 281 314 3.1E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 315 348 1.8E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 349 382 3.1E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 213 246 3.7E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 247 280 1.3E-9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 SMART SM00028 145 178 1.2E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Gene3D G3DSA:1.25.40.10 92 185 2.2E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF13414 TPR repeat 89 125 1.2E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Gene3D G3DSA:1.25.40.10 186 287 1.3E-38 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF00515 Tetratricopeptide repeat 282 314 2.9E-10 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF00515 Tetratricopeptide repeat 316 347 1.2E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF00515 Tetratricopeptide repeat 248 280 2.3E-11 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF00515 Tetratricopeptide repeat 146 178 1.0E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS12285 8c4036545ec796ef6da802baef093a85 442 Pfam PF00515 Tetratricopeptide repeat 350 382 1.9E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 SUPERFAMILY SSF48179 160 282 4.65E-35 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 159 5.6E-58 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 Gene3D G3DSA:3.40.50.720 2 160 1.0E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 279 4.1E-34 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 Gene3D G3DSA:1.10.1040.10 162 282 1.8E-37 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 SUPERFAMILY SSF51735 3 160 3.51E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 288 4.8E-107 T 06-07-2017 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 APT55_RS03410 3557d61fbaedac40008afc07bf6ecdb0 289 PIRSF PIRSF000103 1 286 3.8E-77 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT55_RS03490 cb0205105fc4e02dffe2b1662e9f629d 419 Gene3D G3DSA:3.40.640.10 40 270 6.6E-62 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS03490 cb0205105fc4e02dffe2b1662e9f629d 419 Gene3D G3DSA:3.90.1150.10 271 411 8.9E-15 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS03490 cb0205105fc4e02dffe2b1662e9f629d 419 SUPERFAMILY SSF53383 4 413 9.68E-95 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03490 cb0205105fc4e02dffe2b1662e9f629d 419 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 4 409 4.9E-147 T 06-07-2017 IPR011340 Cysteine desulfurase-related APT55_RS03490 cb0205105fc4e02dffe2b1662e9f629d 419 Pfam PF00266 Aminotransferase class-V 27 405 5.0E-66 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 PRINTS PR01625 Omega-class glutathione S-transferase signature 147 166 2.2E-8 T 06-07-2017 IPR005442 Glutathione S-transferase, omega-class GO:0004364|GO:0005737|GO:0008152 KEGG: 00053+1.8.5.1|KEGG: 00480+2.5.1.18+1.8.5.1|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-2261|MetaCyc: PWY-4061|MetaCyc: PWY-4202|MetaCyc: PWY-6370|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533|Reactome: R-HSA-156590|Reactome: R-HSA-196836 APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 PRINTS PR01625 Omega-class glutathione S-transferase signature 76 90 2.2E-8 T 06-07-2017 IPR005442 Glutathione S-transferase, omega-class GO:0004364|GO:0005737|GO:0008152 KEGG: 00053+1.8.5.1|KEGG: 00480+2.5.1.18+1.8.5.1|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-2261|MetaCyc: PWY-4061|MetaCyc: PWY-4202|MetaCyc: PWY-6370|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533|Reactome: R-HSA-156590|Reactome: R-HSA-196836 APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 PRINTS PR01625 Omega-class glutathione S-transferase signature 2 17 2.2E-8 T 06-07-2017 IPR005442 Glutathione S-transferase, omega-class GO:0004364|GO:0005737|GO:0008152 KEGG: 00053+1.8.5.1|KEGG: 00480+2.5.1.18+1.8.5.1|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-2261|MetaCyc: PWY-4061|MetaCyc: PWY-4202|MetaCyc: PWY-6370|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533|Reactome: R-HSA-156590|Reactome: R-HSA-196836 APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 80 1.8E-15 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 SUPERFAMILY SSF52833 5 104 3.47E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 Gene3D G3DSA:1.20.1050.10 92 215 2.8E-35 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 Pfam PF00043 Glutathione S-transferase, C-terminal domain 107 196 3.5E-9 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 Gene3D G3DSA:3.40.30.10 4 91 2.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02815 7466a129fab4f453ac59a66b0855dc87 227 SUPERFAMILY SSF47616 74 215 2.87E-37 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS21075 4fc38353d26cf06487eff7956d06a31f 68 SUPERFAMILY SSF103511 20 55 2.88E-9 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS21075 4fc38353d26cf06487eff7956d06a31f 68 Gene3D G3DSA:1.10.3460.10 25 54 1.1E-4 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS21075 4fc38353d26cf06487eff7956d06a31f 68 Pfam PF00504 Chlorophyll A-B binding protein 23 54 2.3E-5 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS25750 1928f334e0c11153d5cf8b408dbc7c79 481 Gene3D G3DSA:3.30.200.20 5 69 3.5E-5 T 06-07-2017 APT55_RS25750 1928f334e0c11153d5cf8b408dbc7c79 481 SUPERFAMILY SSF56112 12 213 7.07E-27 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS25750 1928f334e0c11153d5cf8b408dbc7c79 481 SMART SM00220 15 224 4.4E-5 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS25750 1928f334e0c11153d5cf8b408dbc7c79 481 Gene3D G3DSA:1.10.510.10 70 153 2.5E-13 T 06-07-2017 APT55_RS25750 1928f334e0c11153d5cf8b408dbc7c79 481 Pfam PF00069 Protein kinase domain 22 151 1.5E-11 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS08470 149e1e75e2aeaaac10e65c58467bb210 163 SUPERFAMILY SSF88723 1 122 8.83E-5 T 06-07-2017 IPR029060 PIN domain-like APT55_RS08470 149e1e75e2aeaaac10e65c58467bb210 163 Pfam PF11848 Domain of unknown function (DUF3368) 113 156 1.0E-16 T 06-07-2017 IPR021799 Protein of unknown function DUF3368 APT55_RS02355 2b3bf3a15ad2c47ecef30adf5e0caa65 390 SUPERFAMILY SSF88659 288 353 4.49E-11 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS02355 2b3bf3a15ad2c47ecef30adf5e0caa65 390 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 71 352 6.1E-32 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS02355 2b3bf3a15ad2c47ecef30adf5e0caa65 390 Pfam PF08281 Sigma-70, region 4 297 349 6.8E-8 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS02355 2b3bf3a15ad2c47ecef30adf5e0caa65 390 Gene3D G3DSA:1.10.10.10 293 353 1.2E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16345 c04ed090288aec6b144978cec7c4c520 206 Pfam PF05685 Putative restriction endonuclease 12 199 2.5E-37 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS16345 c04ed090288aec6b144978cec7c4c520 206 Gene3D G3DSA:3.90.1570.10 6 203 6.4E-23 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS16345 c04ed090288aec6b144978cec7c4c520 206 SUPERFAMILY SSF52980 4 203 2.63E-23 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Gene3D G3DSA:3.30.830.10 298 455 4.2E-26 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Pfam PF00675 Insulinase (Peptidase family M16) 520 643 1.1E-12 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Pfam PF00675 Insulinase (Peptidase family M16) 64 209 7.7E-25 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Gene3D G3DSA:3.30.830.10 52 268 3.2E-57 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 SUPERFAMILY SSF63411 279 462 4.62E-36 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 SUPERFAMILY SSF63411 742 920 2.87E-35 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Gene3D G3DSA:3.30.830.10 748 918 2.6E-28 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Pfam PF05193 Peptidase M16 inactive domain 673 850 6.0E-29 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Pfam PF05193 Peptidase M16 inactive domain 216 395 3.6E-31 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 SUPERFAMILY SSF63411 52 255 2.55E-56 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 Gene3D G3DSA:3.30.830.10 511 719 7.8E-44 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS16085 ec621375f9f06b4d7b8008025326218e 921 SUPERFAMILY SSF63411 510 727 2.0E-47 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 SUPERFAMILY SSF46785 16 76 5.33E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 Gene3D G3DSA:1.10.10.10 15 64 2.1E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 ProSitePatterns PS00519 AsnC-type HTH domain signature. 35 61 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 33 2.9E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 44 63 2.9E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 44 2.9E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 Gene3D G3DSA:3.30.70.920 69 160 1.5E-12 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 SUPERFAMILY SSF54909 79 159 5.63E-10 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 Pfam PF01037 Lrp/AsnC ligand binding domain 88 152 1.4E-7 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 SMART SM00344 17 123 3.3E-33 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT55_RS17920 61e80b2a79bae67e477898463e31e5e7 172 Pfam PF13404 AsnC-type helix-turn-helix domain 17 57 5.5E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 APT55_RS02985 5de2063579ff520b1235b8522e177df6 264 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 17 246 3.4E-32 T 06-07-2017 APT55_RS02985 5de2063579ff520b1235b8522e177df6 264 SUPERFAMILY SSF53850 5 246 2.21E-24 T 06-07-2017 APT55_RS02985 5de2063579ff520b1235b8522e177df6 264 Gene3D G3DSA:3.40.190.10 95 178 7.0E-6 T 06-07-2017 APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 Gene3D G3DSA:1.20.1560.10 29 339 1.5E-70 T 06-07-2017 APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 SMART SM00382 384 572 3.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 Gene3D G3DSA:3.40.50.300 358 587 6.1E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 Pfam PF00664 ABC transporter transmembrane region 44 311 2.2E-43 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 SUPERFAMILY SSF52540 347 596 1.7E-89 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 SUPERFAMILY SSF90123 29 344 2.88E-73 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07115 a7752266845dcefd84a4c53f355b5ac3 600 Pfam PF00005 ABC transporter 375 524 6.8E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS27645 01db0cde2bd7fd4d1ebb7b8d8b2f911d 421 SUPERFAMILY SSF103473 21 415 2.22E-56 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS27645 01db0cde2bd7fd4d1ebb7b8d8b2f911d 421 Gene3D G3DSA:1.20.1250.20 22 205 3.8E-22 T 06-07-2017 APT55_RS27645 01db0cde2bd7fd4d1ebb7b8d8b2f911d 421 Gene3D G3DSA:1.20.1250.20 225 405 1.8E-19 T 06-07-2017 APT55_RS27645 01db0cde2bd7fd4d1ebb7b8d8b2f911d 421 Pfam PF07690 Major Facilitator Superfamily 31 255 1.2E-20 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS27645 01db0cde2bd7fd4d1ebb7b8d8b2f911d 421 Pfam PF07690 Major Facilitator Superfamily 260 409 3.4E-13 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08447 PAS fold 711 796 1.7E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08447 PAS fold 966 1055 6.9E-12 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08447 PAS fold 584 667 8.3E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08447 PAS fold 455 541 3.5E-21 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08447 PAS fold 315 400 2.8E-19 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 801 929 3.43E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55874 1143 1311 9.43E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF47384 1073 1154 8.83E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1199 1310 2.5E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 286 403 5.1E-33 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 554 664 1.3E-30 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1236 1250 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1254 1264 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1271 1289 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1296 1309 2.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF52172 6 147 1.25E-7 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 545 671 6.28E-28 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 416 553 8.3E-33 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 926 1076 5.1E-30 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 665 812 4.0E-31 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 698 806 2.44E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1089 1151 3.8E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 276 400 1.13E-29 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 713 811 2.7E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 813 938 7.2E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 939 1067 1.8E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 289 413 1.4E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 429 555 1.3E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 556 681 5.9E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF08448 PAS fold 163 282 1.2E-5 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 816 888 160.0 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 432 500 0.0051 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 560 626 6.6E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 156 222 48.0 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 943 1010 5.0E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 292 358 5.0E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00091 686 756 0.72 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF52172 1331 1453 3.84E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 632 674 6.1E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 238 280 3.1E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 762 804 0.13 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 364 406 8.1E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 506 548 4.0E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00086 1018 1061 0.0014 T 06-07-2017 IPR001610 PAC motif APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF13188 PAS domain 816 880 1.3E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00448 1333 1448 7.1E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00388 1088 1154 2.2E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Pfam PF00072 Response regulator receiver domain 1335 1448 8.4E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.40.50.2300 1331 1453 2.6E-30 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 141 278 2.44E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 441 550 3.06E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.40.50.2300 48 137 1.0E-6 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:1.10.287.130 1081 1139 2.0E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SUPERFAMILY SSF55785 928 1059 1.66E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 813 925 5.7E-17 T 06-07-2017 APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 SMART SM00387 1199 1312 9.3E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.565.10 1140 1312 1.2E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22970 fe3573796bf83b5531d55ebbdf5415c7 1460 Gene3D G3DSA:3.30.450.20 141 278 3.3E-12 T 06-07-2017 APT55_RS01285 6d9a81afb83cdb7781ee3de1fde955e0 58 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.6E-5 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 APT55_RS01285 6d9a81afb83cdb7781ee3de1fde955e0 58 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.6E-5 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 APT55_RS01285 6d9a81afb83cdb7781ee3de1fde955e0 58 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 47 1.1E-16 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT55_RS01285 6d9a81afb83cdb7781ee3de1fde955e0 58 Pfam PF02416 mttA/Hcf106 family 4 48 9.7E-18 T 06-07-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 APT55_RS01285 6d9a81afb83cdb7781ee3de1fde955e0 58 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 53 15.611 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT55_RS31215 fe9c64d253d48f1346340973872fe779 239 Gene3D G3DSA:3.40.140.10 114 234 2.6E-38 T 06-07-2017 APT55_RS31215 fe9c64d253d48f1346340973872fe779 239 TIGRFAM TIGR00608 radc: DNA repair protein RadC 34 234 1.3E-47 T 06-07-2017 IPR001405 RadC protein APT55_RS31215 fe9c64d253d48f1346340973872fe779 239 Pfam PF04002 RadC-like JAB domain 117 233 2.0E-37 T 06-07-2017 IPR025657 RadC-like JAB domain APT55_RS31215 fe9c64d253d48f1346340973872fe779 239 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 184 189 - T 06-07-2017 IPR020891 Uncharacterised protein family UPF0758, conserved site APT55_RS12210 c695b86dd835019a4a604d3058a458df 200 Pfam PF06055 Exopolysaccharide synthesis, ExoD 6 182 1.8E-52 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD APT55_RS12210 c695b86dd835019a4a604d3058a458df 200 PIRSF PIRSF033239 1 198 4.1E-53 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD APT55_RS29540 104bcc4aad0764763d096d006c7742f2 217 Gene3D G3DSA:2.60.120.590 14 212 1.5E-42 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like APT55_RS29540 104bcc4aad0764763d096d006c7742f2 217 SUPERFAMILY SSF51197 16 211 2.88E-39 T 06-07-2017 APT55_RS29540 104bcc4aad0764763d096d006c7742f2 217 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 17 209 3.8E-36 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like APT55_RS17880 3b3ba891d9f6b025916a7ae42df26a21 305 Pfam PF01513 ATP-NAD kinase 45 274 3.3E-61 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS17880 3b3ba891d9f6b025916a7ae42df26a21 305 Gene3D G3DSA:2.60.200.30 151 267 1.8E-39 T 06-07-2017 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS17880 3b3ba891d9f6b025916a7ae42df26a21 305 Gene3D G3DSA:3.40.50.10330 2 150 3.4E-30 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS17880 3b3ba891d9f6b025916a7ae42df26a21 305 Hamap MF_00361 NAD kinase [nadK]. 4 292 31.331 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS17880 3b3ba891d9f6b025916a7ae42df26a21 305 SUPERFAMILY SSF111331 5 293 4.97E-75 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain APT55_RS02690 a64ec9941641121109459b9db86ace02 428 Gene3D G3DSA:1.20.1250.20 22 205 6.4E-20 T 06-07-2017 APT55_RS02690 a64ec9941641121109459b9db86ace02 428 Gene3D G3DSA:1.20.1250.20 235 405 1.1E-11 T 06-07-2017 APT55_RS02690 a64ec9941641121109459b9db86ace02 428 SUPERFAMILY SSF103473 23 405 3.79E-44 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS02690 a64ec9941641121109459b9db86ace02 428 Pfam PF05977 Transmembrane secretion effector 19 410 2.5E-58 T 06-07-2017 IPR010290 Transmembrane secretion effector APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 SUPERFAMILY SSF81464 15 118 1.96E-17 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 SUPERFAMILY SSF49503 178 297 1.51E-42 T 06-07-2017 IPR008972 Cupredoxin APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 Gene3D G3DSA:2.60.40.420 174 299 4.5E-40 T 06-07-2017 IPR008972 Cupredoxin APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 226 274 - T 06-07-2017 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 209 275 6.5E-14 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 31 111 5.9E-12 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 Gene3D G3DSA:1.10.287.90 35 111 7.6E-13 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 118 8.9E-10 T 06-07-2017 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 PRINTS PR01166 Cytochrome c oxidase subunit II signature 225 245 8.9E-10 T 06-07-2017 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 PRINTS PR01166 Cytochrome c oxidase subunit II signature 86 98 8.9E-10 T 06-07-2017 APT55_RS11575 d0fb3076199cb7fda003f532c1d79898 333 PRINTS PR01166 Cytochrome c oxidase subunit II signature 263 280 8.9E-10 T 06-07-2017 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 38 201 9.0E-47 T 06-07-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 PRINTS PR00084 Mannitol dehydrogenase signature 192 205 5.1E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 PRINTS PR00084 Mannitol dehydrogenase signature 39 49 5.1E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 PRINTS PR00084 Mannitol dehydrogenase signature 261 276 5.1E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 PRINTS PR00084 Mannitol dehydrogenase signature 231 244 5.1E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 Gene3D G3DSA:1.10.1040.10 295 496 1.2E-67 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 SUPERFAMILY SSF51735 12 294 5.12E-104 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 231 243 - T 06-07-2017 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 Gene3D G3DSA:3.40.50.720 14 294 1.1E-115 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 SUPERFAMILY SSF48179 296 496 1.73E-62 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS20365 f5ec6af5eace0b3ea449b77e10ff48c2 500 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 229 471 2.2E-84 T 06-07-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Gene3D G3DSA:3.40.50.2300 347 469 9.7E-30 T 06-07-2017 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Gene3D G3DSA:1.10.10.10 134 232 3.4E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23525 67512eaa79466449522acae405ad2948 599 SUPERFAMILY SSF46894 135 231 1.56E-24 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Gene3D G3DSA:1.20.120.160 238 329 7.5E-9 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Pfam PF01627 Hpt domain 246 318 2.1E-11 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SUPERFAMILY SSF47226 242 328 8.51E-9 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SMART SM00448 349 460 2.9E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SMART SM00448 472 585 4.2E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SMART SM00448 1 121 6.3E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SUPERFAMILY SSF52172 469 596 2.7E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23525 67512eaa79466449522acae405ad2948 599 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 6.7E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SUPERFAMILY SSF52172 347 468 1.15E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23525 67512eaa79466449522acae405ad2948 599 Pfam PF00072 Response regulator receiver domain 474 585 1.3E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Pfam PF00072 Response regulator receiver domain 4 121 8.3E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Pfam PF00072 Response regulator receiver domain 351 459 1.2E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23525 67512eaa79466449522acae405ad2948 599 Gene3D G3DSA:3.40.50.2300 1 133 3.0E-22 T 06-07-2017 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SMART SM00862 154 230 3.0E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS23525 67512eaa79466449522acae405ad2948 599 SUPERFAMILY SSF52172 1 143 1.57E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23525 67512eaa79466449522acae405ad2948 599 Gene3D G3DSA:3.40.50.2300 470 592 3.6E-33 T 06-07-2017 APT55_RS04165 1f13c670685a7c0ebbc82a533adfdd89 155 Gene3D G3DSA:3.40.420.10 33 114 2.1E-4 T 06-07-2017 IPR016138 Ribosome-inactivating protein, subdomain 1 GO:0017148|GO:0030598 APT55_RS03730 19f8742f7ebf91c52978541cf0a4a1e4 157 SMART SM00100 14 132 3.5E-11 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS03730 19f8742f7ebf91c52978541cf0a4a1e4 157 Gene3D G3DSA:2.60.120.10 9 140 6.0E-24 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS03730 19f8742f7ebf91c52978541cf0a4a1e4 157 Pfam PF00027 Cyclic nucleotide-binding domain 33 119 2.4E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS03730 19f8742f7ebf91c52978541cf0a4a1e4 157 SUPERFAMILY SSF51206 8 140 3.01E-26 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 Pfam PF01544 CorA-like Mg2+ transporter protein 75 373 3.0E-73 T 06-07-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 SUPERFAMILY SSF143865 29 305 5.23E-84 T 06-07-2017 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 Gene3D G3DSA:1.20.58.340 181 292 4.6E-43 T 06-07-2017 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 Gene3D G3DSA:1.20.58.340 294 377 3.0E-34 T 06-07-2017 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 Gene3D G3DSA:3.30.460.20 23 180 5.8E-40 T 06-07-2017 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 47 377 8.6E-122 T 06-07-2017 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 APT55_RS18335 ab3d04f306e1e9abe3c5700ed1b9f6bd 386 SUPERFAMILY SSF144083 306 375 1.57E-21 T 06-07-2017 APT55_RS01400 b66b0adab550b48206bd3be196039d0d 165 SUPERFAMILY SSF54593 6 161 1.02E-51 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS01400 b66b0adab550b48206bd3be196039d0d 165 Gene3D G3DSA:3.10.180.10 4 135 2.0E-51 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS01400 b66b0adab550b48206bd3be196039d0d 165 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 125 1.7E-50 T 06-07-2017 IPR028973 PhnB-like APT55_RS01400 b66b0adab550b48206bd3be196039d0d 165 PIRSF PIRSF021700 2 165 6.7E-63 T 06-07-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 SUPERFAMILY SSF46785 167 306 1.75E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 PRINTS PR00598 Bacterial regulatory protein MarR family signature 251 267 8.4E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 PRINTS PR00598 Bacterial regulatory protein MarR family signature 281 301 8.4E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 PRINTS PR00598 Bacterial regulatory protein MarR family signature 232 247 8.4E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 Pfam PF01047 MarR family 198 255 7.0E-12 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 Pfam PF01047 MarR family 46 103 2.8E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 Gene3D G3DSA:1.10.10.10 171 306 2.1E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 Gene3D G3DSA:1.10.10.10 20 155 2.8E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 SUPERFAMILY SSF46785 20 155 3.22E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 SMART SM00347 191 291 2.0E-19 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS04740 a0a5ad7833d65c0b0ba37d78b854c8e4 308 SMART SM00347 39 139 7.5E-21 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS03720 d90f2428d45543900095a318add34bef 259 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 17 153 4.4E-22 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03720 d90f2428d45543900095a318add34bef 259 SUPERFAMILY SSF56770 3 219 7.2E-44 T 06-07-2017 APT55_RS03720 d90f2428d45543900095a318add34bef 259 Gene3D G3DSA:3.40.50.700 6 170 5.8E-23 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 SUPERFAMILY SSF90123 7 335 9.68E-39 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 Pfam PF00664 ABC transporter transmembrane region 36 304 8.1E-25 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 Gene3D G3DSA:1.20.1560.10 7 334 8.5E-38 T 06-07-2017 APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 SMART SM00382 382 568 2.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 Gene3D G3DSA:3.40.50.300 356 587 9.0E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 SUPERFAMILY SSF52540 345 593 6.71E-95 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03880 08a4f6d47904317e7fd6e4ce4072175e 600 Pfam PF00005 ABC transporter 373 522 3.5E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 Pfam PF12849 PBP superfamily domain 507 726 3.5E-9 T 06-07-2017 IPR024370 PBP domain APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 Gene3D G3DSA:3.40.190.10 486 544 2.5E-4 T 06-07-2017 APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 SUPERFAMILY SSF53850 508 757 9.39E-20 T 06-07-2017 APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 SUPERFAMILY SSF56112 114 335 3.72E-12 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 Gene3D G3DSA:3.40.190.10 545 715 4.6E-17 T 06-07-2017 APT55_RS09520 f2a42d71f855a20e3ed2e2910b8e096e 758 Gene3D G3DSA:3.30.200.20 107 238 1.6E-4 T 06-07-2017 APT55_RS06645 756008db8058031120890c6634b46c24 268 Pfam PF07885 Ion channel 142 218 4.9E-9 T 06-07-2017 IPR013099 Potassium channel domain APT55_RS06645 756008db8058031120890c6634b46c24 268 Gene3D G3DSA:1.20.120.350 22 127 9.9E-5 T 06-07-2017 IPR027359 Voltage-dependent channel, four helix bundle domain APT55_RS06645 756008db8058031120890c6634b46c24 268 SUPERFAMILY SSF81324 22 219 6.02E-28 T 06-07-2017 APT55_RS06645 756008db8058031120890c6634b46c24 268 Gene3D G3DSA:1.10.287.70 130 181 3.8E-7 T 06-07-2017 APT55_RS06645 756008db8058031120890c6634b46c24 268 Gene3D G3DSA:1.20.5.110 183 224 5.0E-16 T 06-07-2017 APT55_RS18280 856c12a30fcbaca15f5299997a5a3a1b 88 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 81 2.8E-30 T 06-07-2017 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 983 1094 6.7E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF00072 Response regulator receiver domain 1119 1232 2.2E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF13426 PAS domain 607 714 0.0033 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF00512 His Kinase A (phospho-acceptor) domain 872 936 3.4E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00448 1117 1232 2.8E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF52172 1116 1237 1.85E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 443 574 1.64E-18 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 316 444 8.05E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 582 714 1.33E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.40.50.2300 1117 1238 5.7E-34 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 77 189 7.25E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 595 667 24.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 69 137 6.9 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 331 398 9.3E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 198 268 9.9E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 728 796 0.0012 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00091 458 527 15.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00388 871 937 1.5E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 674 716 0.19 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 404 446 100.0 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 533 576 2.8E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 802 844 4.9E-6 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 143 186 0.01 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00086 276 319 8.4E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF08448 PAS fold 337 447 4.9E-13 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 585 706 4.6E-13 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 321 437 8.0E-27 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF47384 856 938 3.73E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:1.10.287.130 864 922 7.6E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 713 842 5.64E-25 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF08447 PAS fold 751 837 1.1E-22 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF08447 PAS fold 222 313 2.0E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF08447 PAS fold 96 178 1.7E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Pfam PF08447 PAS fold 483 569 1.9E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1038 1048 6.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1080 1093 6.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1055 1073 6.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1020 1034 6.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55785 183 317 2.97E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 329 451 8.6E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 454 581 3.1E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 724 848 3.2E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 195 326 7.9E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 707 863 2.5E-43 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 438 584 7.7E-41 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 44 187 4.5E-32 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.450.20 188 320 6.7E-50 T 06-07-2017 APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SUPERFAMILY SSF55874 926 1096 6.68E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 Gene3D G3DSA:3.30.565.10 923 1094 8.0E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30960 562572d261171399387de2fc67a73c2e 1244 SMART SM00387 983 1096 1.7E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19015 bd2aa756c5ced8596ef1203deba6aa51 151 Pfam PF14229 Domain of unknown function (DUF4332) 24 145 1.1E-35 T 06-07-2017 IPR025567 Domain of unknown function DUF4332 KEGG: 00970+6.1.1.6 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 SUPERFAMILY SSF47384 302 333 3.14E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 SUPERFAMILY SSF47384 234 274 3.14E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 452 4.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 493 4.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 473 4.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 438 4.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Gene3D G3DSA:3.30.565.10 331 496 2.7E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Gene3D G3DSA:3.30.450.40 45 163 1.9E-5 T 06-07-2017 IPR029016 GAF domain-like APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 SUPERFAMILY SSF55874 320 494 1.83E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Gene3D G3DSA:1.10.287.130 301 330 2.5E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Gene3D G3DSA:1.10.287.130 234 265 2.5E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 SMART SM00387 379 496 4.8E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 382 494 5.8E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20965 06b3d9f5f4ee4a0b6c811931299ffdd1 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 333 1.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13730 951acff5798b0c4329a8b6c8873db06e 113 Pfam PF14105 Domain of unknown function (DUF4278) 54 110 3.0E-15 T 06-07-2017 IPR025458 Protein of unknown function DUF4278 APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:1.10.10.160 148 223 1.4E-24 T 06-07-2017 IPR013986 DExx box DNA helicase domain APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 SUPERFAMILY SSF52540 107 696 4.66E-169 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 SUPERFAMILY SSF52540 4 77 4.66E-169 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 5 766 2.1E-286 T 06-07-2017 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Pfam PF13361 UvrD-like helicase C-terminal domain 331 669 1.4E-74 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:3.40.50.300 224 340 1.6E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:3.40.50.300 5 138 1.6E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:1.10.486.10 444 594 1.1E-49 T 06-07-2017 APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Pfam PF00580 UvrD/REP helicase N-terminal domain 9 318 1.6E-83 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:3.40.50.300 341 443 1.1E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18870 eca9d5c3773af8d72a079adc1832a98f 780 Gene3D G3DSA:3.40.50.300 606 696 1.1E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 Gene3D G3DSA:3.30.70.20 8 69 5.8E-17 T 06-07-2017 APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 11 22 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 Pfam PF12838 4Fe-4S dicluster domain 10 61 1.3E-9 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 SUPERFAMILY SSF54862 6 61 2.09E-16 T 06-07-2017 APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 Hamap MF_01303 Photosystem I iron-sulfur center [psaC]. 1 81 36.697 T 06-07-2017 IPR017491 Photosystem I protein PsaC GO:0009055|GO:0009522|GO:0009773|GO:0015979|GO:0042651|GO:0051539 MetaCyc: PWY-101 APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 48 59 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS15045 3fc6971c91b66c1d6590325bab61b074 81 TIGRFAM TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC 2 81 1.4E-56 T 06-07-2017 IPR017491 Photosystem I protein PsaC GO:0009055|GO:0009522|GO:0009773|GO:0015979|GO:0042651|GO:0051539 MetaCyc: PWY-101 APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 Gene3D G3DSA:1.10.150.20 215 279 4.6E-11 T 06-07-2017 APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 SUPERFAMILY SSF47794 225 279 4.71E-7 T 06-07-2017 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 SUPERFAMILY SSF53098 306 485 7.25E-12 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 SUPERFAMILY SSF53098 197 211 7.25E-12 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 3 481 4.5E-165 T 06-07-2017 IPR019993 RecB family nuclease, TM0106, putative APT55_RS15280 e5b01bfc3d51b7da0ffca1bef50b5a54 498 Pfam PF13482 RNase_H superfamily 311 481 6.6E-45 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Pfam PF13414 TPR repeat 383 419 4.8E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Gene3D G3DSA:3.30.200.20 30 133 2.0E-12 T 06-07-2017 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Pfam PF13424 Tetratricopeptide repeat 442 508 2.5E-9 T 06-07-2017 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SUPERFAMILY SSF56112 28 302 1.15E-46 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SUPERFAMILY SSF48452 342 526 9.23E-27 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 166 178 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Gene3D G3DSA:1.25.40.10 341 527 3.7E-38 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00220 34 296 1.3E-12 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Gene3D G3DSA:1.10.510.10 134 292 9.3E-29 T 06-07-2017 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 Pfam PF00069 Protein kinase domain 42 287 3.9E-27 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00028 339 372 67.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00028 407 440 0.31 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00028 373 406 4.4E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00028 442 475 57.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS30650 787764098f76d0a58c8e2d9b6f311cf1 561 SMART SM00028 479 512 0.0039 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Gene3D G3DSA:3.40.50.980 222 384 1.7E-33 T 06-07-2017 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Gene3D G3DSA:3.40.50.980 54 221 4.6E-31 T 06-07-2017 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 ProSitePatterns PS00455 Putative AMP-binding domain signature. 217 228 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Gene3D G3DSA:2.30.38.10 385 465 9.3E-18 T 06-07-2017 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Gene3D G3DSA:3.30.300.30 467 568 5.0E-27 T 06-07-2017 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Pfam PF00501 AMP-binding enzyme 54 472 1.9E-86 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 Pfam PF13193 AMP-binding enzyme C-terminal domain 481 559 5.0E-22 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS03665 a8f30168d7c56eca12bc55e1e0c26665 583 SUPERFAMILY SSF56801 52 572 2.88E-148 T 06-07-2017 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 394 570 4.3E-50 T 06-07-2017 IPR001162 UvrC family homology region APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Pfam PF12826 Helix-hairpin-helix motif 589 638 1.5E-10 T 06-07-2017 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Pfam PF01541 GIY-YIG catalytic domain 28 101 8.3E-11 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Gene3D G3DSA:4.10.860.10 193 253 4.1E-17 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 SUPERFAMILY SSF46600 200 253 1.96E-12 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 SMART SM00465 27 108 6.9E-22 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 SUPERFAMILY SSF47781 557 637 1.21E-21 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 18 616 2.6E-200 T 06-07-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Gene3D G3DSA:3.40.1440.10 27 105 1.9E-8 T 06-07-2017 IPR027299 GIY-YIG domain APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Hamap MF_00203 UvrABC system protein C [uvrC]. 14 635 29.398 T 06-07-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Pfam PF02151 UvrB/uvrC motif 218 248 4.9E-8 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 Gene3D G3DSA:1.10.150.20 584 637 9.0E-21 T 06-07-2017 APT55_RS09265 3b7f729603560875f3aab901adc4130d 659 SUPERFAMILY SSF82771 28 110 1.23E-21 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Pfam PF13181 Tetratricopeptide repeat 11 42 4.1E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Pfam PF00515 Tetratricopeptide repeat 213 245 2.1E-9 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Pfam PF00515 Tetratricopeptide repeat 180 211 1.4E-10 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 213 246 6.9E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 179 212 4.3E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 77 110 7.5E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 145 178 5.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 43 76 1.3E-9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 111 144 2.2E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SMART SM00028 9 42 0.0069 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 SUPERFAMILY SSF48439 18 244 5.23E-66 T 06-07-2017 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Gene3D G3DSA:1.25.40.10 105 187 1.7E-34 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Gene3D G3DSA:1.25.40.10 188 247 1.2E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Gene3D G3DSA:1.25.40.10 10 104 3.2E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Pfam PF13414 TPR repeat 125 159 8.7E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26595 169e64f7a3f7280e21deed2023b7a18d 278 Pfam PF13414 TPR repeat 50 91 2.3E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS15520 5399ef5f78577afba3cf5eb5a306b0e8 324 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 299 1.5E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15520 5399ef5f78577afba3cf5eb5a306b0e8 324 Gene3D G3DSA:3.90.25.10 169 312 9.8E-57 T 06-07-2017 APT55_RS15520 5399ef5f78577afba3cf5eb5a306b0e8 324 Gene3D G3DSA:3.40.50.720 1 168 8.3E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15520 5399ef5f78577afba3cf5eb5a306b0e8 324 SUPERFAMILY SSF51735 1 307 1.23E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17365 652836b34f419069eeb4a9d8387548c6 235 SUPERFAMILY SSF144091 13 231 1.57E-44 T 06-07-2017 APT55_RS17365 652836b34f419069eeb4a9d8387548c6 235 Pfam PF01694 Rhomboid family 69 227 9.1E-38 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS17365 652836b34f419069eeb4a9d8387548c6 235 Gene3D G3DSA:1.20.1540.10 13 225 1.4E-44 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 99 346 3.7E-98 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 Gene3D G3DSA:3.40.50.300 87 346 8.9E-104 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 Hamap MF_02040 Iron-sulfur cluster carrier protein. 94 347 38.349 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 ProSitePatterns PS01215 Mrp family signature. 209 225 - T 06-07-2017 IPR000808 Mrp, conserved site GO:0005524 APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 Pfam PF01883 Domain of unknown function DUF59 8 80 3.1E-24 T 06-07-2017 IPR002744 Domain of unknown function DUF59 APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 SUPERFAMILY SSF117916 4 93 2.81E-26 T 06-07-2017 APT55_RS26275 c2d25215a03f6704e5d6f75360b71a8a 356 SUPERFAMILY SSF52540 101 350 1.18E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00030 fc57198077cea731063fcf48247be050 243 SMART SM00862 155 233 4.4E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS00030 fc57198077cea731063fcf48247be050 243 Gene3D G3DSA:1.10.10.10 134 234 5.0E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00030 fc57198077cea731063fcf48247be050 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 233 1.9E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS00030 fc57198077cea731063fcf48247be050 243 Gene3D G3DSA:3.40.50.2300 4 124 1.8E-44 T 06-07-2017 APT55_RS00030 fc57198077cea731063fcf48247be050 243 SMART SM00448 6 116 2.0E-47 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00030 fc57198077cea731063fcf48247be050 243 Pfam PF00072 Response regulator receiver domain 8 117 1.2E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00030 fc57198077cea731063fcf48247be050 243 SUPERFAMILY SSF52172 5 188 1.85E-45 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05480 fc317b549dd94122b633872d6ab3a4f0 227 Gene3D G3DSA:3.40.50.10140 6 116 1.1E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05480 fc317b549dd94122b633872d6ab3a4f0 227 SUPERFAMILY SSF52200 4 112 7.72E-26 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05480 fc317b549dd94122b633872d6ab3a4f0 227 Pfam PF13676 TIR domain 7 114 4.2E-30 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS05480 fc317b549dd94122b633872d6ab3a4f0 227 SMART SM00255 4 133 5.5E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS17535 2485222672d066e2eacbaaa92c3dbd6f 254 Pfam PF00005 ABC transporter 22 170 3.9E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS17535 2485222672d066e2eacbaaa92c3dbd6f 254 SUPERFAMILY SSF52540 6 232 5.55E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17535 2485222672d066e2eacbaaa92c3dbd6f 254 SMART SM00382 31 214 4.7E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17535 2485222672d066e2eacbaaa92c3dbd6f 254 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS17535 2485222672d066e2eacbaaa92c3dbd6f 254 Gene3D G3DSA:3.40.50.300 6 230 2.1E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 100 129 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 172 201 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 304 321 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 134 163 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 250 279 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 PRINTS PR00142 RecA protein signature 217 245 5.0E-83 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 Pfam PF00154 recA bacterial DNA recombination protein 15 275 1.4E-137 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 Hamap MF_00268 Protein RecA [recA]. 13 336 50.02 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 Gene3D G3DSA:3.40.50.300 35 274 2.7E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 SUPERFAMILY SSF54752 276 332 5.23E-19 T 06-07-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 12 331 2.3E-166 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 SMART SM00382 64 235 1.2E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 Gene3D G3DSA:3.30.250.10 275 333 4.2E-24 T 06-07-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal APT55_RS11070 e7b3598d5fdda22d86152a4da39f54cb 362 SUPERFAMILY SSF52540 12 274 2.03E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 Hamap MF_01465 Protein translocase subunit SecY [secY]. 15 432 28.112 T 06-07-2017 IPR026593 Protein translocase subunit SecY APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 ProSitePatterns PS00755 Protein secY signature 1. 79 98 - T 06-07-2017 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 SUPERFAMILY SSF103491 11 423 1.05E-115 T 06-07-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 25 428 1.1E-137 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PIRSF PIRSF004557 7 434 3.6E-133 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 Pfam PF00344 SecY translocase 80 415 2.2E-108 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 179 202 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 28 46 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 401 419 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 153 178 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 78 98 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 3.9E-95 T 06-07-2017 APT55_RS00930 c8caedac32d57e0c75502047c698d440 434 Gene3D G3DSA:1.10.3370.10 14 434 1.0E-142 T 06-07-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 Gene3D G3DSA:3.30.390.30 324 441 6.4E-33 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 SUPERFAMILY SSF55424 333 441 2.06E-27 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PIRSF PIRSF000350 1 441 2.1E-92 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 Gene3D G3DSA:3.50.50.60 3 138 7.1E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 SUPERFAMILY SSF51905 1 363 3.63E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 439 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 397 412 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 9.5E-66 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 317 4.7E-65 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 441 7.1E-26 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 1.4E-31 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.4E-31 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.4E-31 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 1.4E-31 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 1.4E-31 T 06-07-2017 APT55_RS14035 05df154969ab78f0112d85eb930903fb 443 Gene3D G3DSA:3.50.50.60 139 323 6.3E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 SUPERFAMILY SSF55718 123 227 7.06E-8 T 06-07-2017 IPR003033 SCP2 sterol-binding domain APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 Gene3D G3DSA:3.30.1050.10 124 219 3.6E-4 T 06-07-2017 IPR003033 SCP2 sterol-binding domain APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 SUPERFAMILY SSF46785 13 118 4.27E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 Pfam PF02036 SCP-2 sterol transfer family 143 223 5.4E-6 T 06-07-2017 IPR003033 SCP2 sterol-binding domain APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 Gene3D G3DSA:1.10.10.10 12 114 4.5E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS18455 9856a5b8e500945e4b5ca1ccc885c62b 264 Pfam PF01638 HxlR-like helix-turn-helix 25 112 2.2E-21 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type APT55_RS04575 1e00ca0c1a3768d65f2fd620daac4e94 406 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 30 390 2.7E-61 T 06-07-2017 IPR010645 Uncharacterised MFS-type transporter YbfB APT55_RS04575 1e00ca0c1a3768d65f2fd620daac4e94 406 Gene3D G3DSA:1.20.1250.20 18 192 8.8E-16 T 06-07-2017 APT55_RS04575 1e00ca0c1a3768d65f2fd620daac4e94 406 Gene3D G3DSA:1.20.1250.20 218 397 8.8E-19 T 06-07-2017 APT55_RS04575 1e00ca0c1a3768d65f2fd620daac4e94 406 SUPERFAMILY SSF103473 12 395 8.5E-42 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 Pfam PF02481 DNA recombination-mediator protein A 72 277 1.8E-79 T 06-07-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 SUPERFAMILY SSF47781 4 59 2.45E-9 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 285 1.9E-80 T 06-07-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 SUPERFAMILY SSF102405 77 274 3.01E-37 T 06-07-2017 APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 Gene3D G3DSA:3.40.50.450 113 256 4.6E-12 T 06-07-2017 APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 Gene3D G3DSA:1.10.150.20 11 58 1.1E-8 T 06-07-2017 APT55_RS09725 77de3170e009e1dbcfec9d7493e1ce29 371 Gene3D G3DSA:1.10.10.10 310 370 2.1E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 Gene3D G3DSA:3.40.1010.10 4 112 8.6E-19 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 5 274 4.7E-101 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 PIRSF PIRSF005917 1 277 4.0E-111 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 203 5.9E-32 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 Gene3D G3DSA:3.30.950.10 113 225 6.3E-47 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 4 223 39.232 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS05605 091ff0ed772f35f466614193c09123d9 278 SUPERFAMILY SSF53790 4 221 6.94E-86 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 308 7.9E-143 T 06-07-2017 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 35 53 - T 06-07-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 308 4.5E-135 T 06-07-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 SUPERFAMILY SSF53686 1 310 1.96E-104 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 293 8.2E-68 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 Gene3D G3DSA:3.40.50.1100 139 310 1.6E-76 T 06-07-2017 APT55_RS12975 91248196e6cfce08a74eeb0863882bb3 321 Gene3D G3DSA:3.40.50.1100 40 138 6.9E-41 T 06-07-2017 APT55_RS04335 7c12250b9767909b07c9fbf07b7c3ef9 260 Pfam PF07286 Protein of unknown function (DUF1445) 110 252 1.2E-64 T 06-07-2017 IPR009906 Protein of unknown function DUF1445 APT55_RS04335 7c12250b9767909b07c9fbf07b7c3ef9 260 Gene3D G3DSA:3.40.1640.10 5 162 1.5E-61 T 06-07-2017 APT55_RS04335 7c12250b9767909b07c9fbf07b7c3ef9 260 Hamap MF_01830 UPF0317 protein . 6 260 51.679 T 06-07-2017 IPR016938 Uncharacterised protein family UPF0317 APT55_RS04335 7c12250b9767909b07c9fbf07b7c3ef9 260 SUPERFAMILY SSF160920 3 253 4.71E-109 T 06-07-2017 APT55_RS04335 7c12250b9767909b07c9fbf07b7c3ef9 260 PIRSF PIRSF029755 2 260 5.1E-116 T 06-07-2017 IPR016938 Uncharacterised protein family UPF0317 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Pfam PF04898 Glutamate synthase central domain 486 782 1.0E-110 T 06-07-2017 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Gene3D G3DSA:3.20.20.70 472 831 2.8E-108 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Pfam PF01645 Conserved region in glutamate synthase 841 1225 3.4E-162 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Pfam PF01493 GXGXG motif 1307 1491 1.4E-78 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 SUPERFAMILY SSF69336 1276 1538 2.35E-93 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Gene3D G3DSA:3.20.20.70 861 1258 2.9E-173 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Pfam PF00310 Glutamine amidotransferases class-II 39 459 1.1E-184 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 SUPERFAMILY SSF51395 481 1272 1.56E-269 T 06-07-2017 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Gene3D G3DSA:3.60.20.10 39 468 1.9E-170 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 Gene3D G3DSA:2.160.20.60 1291 1541 4.5E-100 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS16630 73b415aa43c0c685f9cc12e4590d2c5c 1551 SUPERFAMILY SSF56235 39 463 2.24E-150 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS04925 e6bc86ad3f48f355c586106bb37645be 291 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 21 278 3.9E-52 T 06-07-2017 IPR019127 Exosortase EpsH-related APT55_RS04925 e6bc86ad3f48f355c586106bb37645be 291 TIGRFAM TIGR02602 8TM_EpsH: exosortase 41 275 4.1E-63 T 06-07-2017 IPR013426 Exosortase, EpsH APT55_RS04925 e6bc86ad3f48f355c586106bb37645be 291 TIGRFAM TIGR04156 cyanoexo_CrtB: cyanoexosortase B 16 288 2.1E-134 T 06-07-2017 IPR026492 Cyanoexosortase B APT55_RS04925 e6bc86ad3f48f355c586106bb37645be 291 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 186 280 1.0E-16 T 06-07-2017 IPR026392 Exosortase/Archaeosortase domain APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Gene3D G3DSA:3.60.20.10 2 241 7.9E-75 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 628 39.684 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Gene3D G3DSA:3.40.50.10490 250 460 2.3E-65 T 06-07-2017 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Gene3D G3DSA:3.40.50.10490 461 628 1.0E-62 T 06-07-2017 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 SUPERFAMILY SSF53697 251 628 3.06E-100 T 06-07-2017 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 628 7.6E-247 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Pfam PF13522 Glutamine amidotransferase domain 65 198 5.5E-20 T 06-07-2017 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Pfam PF01380 SIS domain 485 609 1.1E-23 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 Pfam PF01380 SIS domain 304 435 1.0E-20 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS05140 37cd70e004ca5b85819c0770e28fe53b 628 SUPERFAMILY SSF56235 2 241 2.74E-68 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS10685 a8600de0717c58f8db4999410f53f171 413 Pfam PF13439 Glycosyltransferase Family 4 39 207 8.2E-18 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS10685 a8600de0717c58f8db4999410f53f171 413 Gene3D G3DSA:3.40.50.2000 190 380 3.6E-28 T 06-07-2017 APT55_RS10685 a8600de0717c58f8db4999410f53f171 413 Pfam PF00534 Glycosyl transferases group 1 229 382 9.8E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10685 a8600de0717c58f8db4999410f53f171 413 SUPERFAMILY SSF53756 27 407 1.14E-68 T 06-07-2017 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 SMART SM00382 28 210 4.7E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Pfam PF00005 ABC transporter 20 161 3.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Gene3D G3DSA:3.40.50.300 4 236 5.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Pfam PF08402 TOBE domain 281 351 1.3E-11 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Gene3D G3DSA:2.40.50.140 286 344 5.0E-15 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 SUPERFAMILY SSF52540 4 244 2.01E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Gene3D G3DSA:2.40.50.100 239 285 2.1E-19 T 06-07-2017 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 Gene3D G3DSA:2.40.50.100 345 358 2.1E-19 T 06-07-2017 APT55_RS20360 d088750a7a73587217664edb9510bdfc 385 SUPERFAMILY SSF50331 236 357 1.68E-30 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Pfam PF13646 HEAT repeats 152 231 1.3E-12 T 06-07-2017 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Pfam PF13646 HEAT repeats 348 419 1.8E-8 T 06-07-2017 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SUPERFAMILY SSF48371 77 281 2.7E-36 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SUPERFAMILY SSF48371 292 404 7.48E-11 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Pfam PF03130 PBS lyase HEAT-like repeat 102 125 0.052 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Pfam PF03130 PBS lyase HEAT-like repeat 253 278 0.0033 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Gene3D G3DSA:1.25.10.10 82 295 2.1E-37 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 Gene3D G3DSA:1.25.10.10 296 404 4.1E-12 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 66 94 150.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 98 127 5.4 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 158 187 17.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 189 218 0.85 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 251 280 1.8E-4 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12080 8c4eb4e7757074c39ef93ea6cf816c11 425 SMART SM00567 E-Z type HEAT repeats 349 378 3.3E-6 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS06685 31a66b7d63098b0d8f912be22f497606 235 Gene3D G3DSA:3.20.20.370 12 233 2.2E-53 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS06685 31a66b7d63098b0d8f912be22f497606 235 Pfam PF01522 Polysaccharide deacetylase 45 163 6.9E-22 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS06685 31a66b7d63098b0d8f912be22f497606 235 SUPERFAMILY SSF88713 21 232 6.43E-46 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 SUPERFAMILY SSF47648 11 75 4.06E-14 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 Pfam PF00591 Glycosyl transferase family, a/b domain 84 333 3.6E-91 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 Gene3D G3DSA:3.40.1030.10 83 343 7.3E-104 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 15 342 1.4E-123 T 06-07-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 13 343 37.22 T 06-07-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 Gene3D G3DSA:1.20.970.10 10 74 2.5E-21 T 06-07-2017 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 SUPERFAMILY SSF52418 82 343 6.02E-94 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS18475 98a2e90068243e9676062cbabb0ab19d 345 Pfam PF02885 Glycosyl transferase family, helical bundle domain 13 72 6.5E-10 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 Pfam PF00311 Phosphoenolpyruvate carboxylase 199 1020 0.0 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 Gene3D G3DSA:1.20.1440.90 353 488 3.3E-23 T 06-07-2017 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 205 216 - T 06-07-2017 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 657 677 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 832 858 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 324 339 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 265 281 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 204 217 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 699 728 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 486 506 2.3E-64 T 06-07-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 24 1020 19.054 T 06-07-2017 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 SUPERFAMILY SSF51621 161 1020 1.88E-301 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 SUPERFAMILY SSF51621 38 129 1.88E-301 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS20930 96d607d62d95f823c455a4c74615fba3 1020 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 659 671 - T 06-07-2017 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT55_RS08780 45dbcfc8e26495516d316409e2501983 150 Pfam PF13581 Histidine kinase-like ATPase domain 34 138 2.8E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08780 45dbcfc8e26495516d316409e2501983 150 PIRSF PIRSF020906 1 149 2.5E-58 T 06-07-2017 IPR016781 Anti-sigma regulatory factor, PmgA, predicted APT55_RS08780 45dbcfc8e26495516d316409e2501983 150 Gene3D G3DSA:3.30.565.10 42 139 5.4E-8 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08780 45dbcfc8e26495516d316409e2501983 150 SUPERFAMILY SSF55874 40 132 3.7E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 Pfam PF00902 Sec-independent protein translocase protein (TatC) 47 250 1.8E-61 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 45 258 3.4E-78 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 32 270 17.447 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 ProSitePatterns PS01218 TatC family signature. 185 204 - T 06-07-2017 IPR019820 Sec-independent periplasmic protein translocase, conserved site APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 185 213 1.5E-44 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 44 71 1.5E-44 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 116 134 1.5E-44 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS18800 8fc53abbe7ea002de671d1d75259afad 270 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 134 160 1.5E-44 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 SUPERFAMILY SSF56808 16 227 2.88E-76 T 06-07-2017 IPR023674 Ribosomal protein L1-like APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 4 228 4.5E-97 T 06-07-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 PIRSF PIRSF002155 2 227 3.9E-75 T 06-07-2017 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 06-07-2017 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 3 229 41.311 T 06-07-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 Gene3D G3DSA:3.40.50.790 69 159 1.7E-38 T 06-07-2017 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 Gene3D G3DSA:3.30.190.20 17 68 5.4E-43 T 06-07-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 Gene3D G3DSA:3.30.190.20 161 227 5.4E-43 T 06-07-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 APT55_RS17490 c6eb16f2d477d5c0defb2cb7d773a51d 238 Pfam PF00687 Ribosomal protein L1p/L10e family 30 220 1.6E-48 T 06-07-2017 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 Gene3D G3DSA:3.40.50.300 356 491 8.3E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 SUPERFAMILY SSF52540 341 492 5.75E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 Gene3D G3DSA:3.90.1200.10 128 294 1.2E-9 T 06-07-2017 APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 Pfam PF13671 AAA domain 344 480 3.7E-24 T 06-07-2017 APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 Gene3D G3DSA:3.40.50.300 316 355 5.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02040 8368ec452ee787488a74d0084fdb60fe 497 SUPERFAMILY SSF56112 7 329 7.58E-22 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS06260 fade1fc2275b6eca79c5b34af7a9374b 758 Gene3D G3DSA:2.60.120.200 655 731 6.3E-4 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain APT55_RS03915 5a235af9dfa203a30358461e42f2bc54 468 SUPERFAMILY SSF55961 132 360 1.28E-33 T 06-07-2017 APT55_RS03915 5a235af9dfa203a30358461e42f2bc54 468 Pfam PF08417 Pheophorbide a oxygenase 237 322 4.2E-24 T 06-07-2017 IPR013626 Pheophorbide a oxygenase GO:0010277|GO:0055114 APT55_RS03915 5a235af9dfa203a30358461e42f2bc54 468 Gene3D G3DSA:2.102.10.10 26 145 1.1E-37 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS03915 5a235af9dfa203a30358461e42f2bc54 468 SUPERFAMILY SSF50022 21 144 5.11E-33 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS03915 5a235af9dfa203a30358461e42f2bc54 468 Pfam PF00355 Rieske [2Fe-2S] domain 28 111 9.1E-20 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 Gene3D G3DSA:2.40.50.140 18 83 3.0E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 Gene3D G3DSA:1.10.40.50 250 300 1.0E-15 T 06-07-2017 APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 59 299 1.0E-79 T 06-07-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 18 305 33.86 T 06-07-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 SUPERFAMILY SSF50249 18 85 1.26E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 SUPERFAMILY SSF52540 89 300 9.08E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 Pfam PF03193 Protein of unknown function, DUF258 82 246 2.4E-60 T 06-07-2017 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 APT55_RS12480 f73b0afcd97368a53781f7057be7a98b 365 Gene3D G3DSA:3.40.50.300 87 245 5.1E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 SUPERFAMILY SSF51905 5 377 2.92E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 466 3.5E-30 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 434 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 282 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 315 322 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 441 461 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.2E-60 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Gene3D G3DSA:3.50.50.60 3 149 5.4E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Gene3D G3DSA:3.50.50.60 262 343 2.9E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Gene3D G3DSA:3.30.390.30 344 470 5.5E-45 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Gene3D G3DSA:3.50.50.60 150 261 4.0E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 335 2.6E-60 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 283 8.0E-17 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 8.0E-17 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 8.0E-17 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 8.0E-17 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 SUPERFAMILY SSF55424 351 468 3.26E-35 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 PIRSF PIRSF000350 1 468 3.3E-76 T 06-07-2017 APT55_RS15130 45c1a2153cd2691c4ca939754b18198f 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 5 471 9.5E-128 T 06-07-2017 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 PRINTS PR00478 Phosphoribulokinase family signature 11 28 4.6E-14 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 PRINTS PR00478 Phosphoribulokinase family signature 138 155 4.6E-14 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 PRINTS PR00478 Phosphoribulokinase family signature 156 179 4.6E-14 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 6 184 1.7E-36 T 06-07-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 Gene3D G3DSA:3.40.50.300 2 241 8.4E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 SUPERFAMILY SSF52540 1 189 5.59E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09665 5f792921476b3f5ae9d7e3d543831c7c 307 ProSitePatterns PS00567 Phosphoribulokinase signature. 138 151 - T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 APT55_RS24780 eafd21b58a30d2ac6a7387ab101b9b7e 121 SUPERFAMILY SSF53137 6 119 2.09E-53 T 06-07-2017 APT55_RS24780 eafd21b58a30d2ac6a7387ab101b9b7e 121 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 121 1.7E-49 T 06-07-2017 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24780 eafd21b58a30d2ac6a7387ab101b9b7e 121 Gene3D G3DSA:3.30.420.100 23 121 1.7E-41 T 06-07-2017 APT55_RS24780 eafd21b58a30d2ac6a7387ab101b9b7e 121 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 121 6.5E-44 T 06-07-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24780 eafd21b58a30d2ac6a7387ab101b9b7e 121 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 5 121 29.043 T 06-07-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 Pfam PF02355 Protein export membrane protein 277 445 6.4E-16 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 Pfam PF07549 SecD/SecF GG Motif 32 50 9.3E-5 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 455 37.614 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 Gene3D G3DSA:1.20.1640.10 262 448 1.1E-27 T 06-07-2017 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 SUPERFAMILY SSF82866 253 445 3.27E-40 T 06-07-2017 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 199 436 8.0E-73 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 PRINTS PR00702 Acriflavin resistance protein family signature 345 369 2.3E-6 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 PRINTS PR00702 Acriflavin resistance protein family signature 292 315 2.3E-6 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 PRINTS PR00702 Acriflavin resistance protein family signature 420 443 2.3E-6 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS24165 63cf87852e4d3d2497430d4b0d620040 474 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 32 443 2.4E-127 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 17 33 3.8E-16 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 39 53 3.8E-16 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 191 203 3.8E-16 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 58 71 3.8E-16 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 PIRSF PIRSF000398 6 285 1.2E-76 T 06-07-2017 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 Gene3D G3DSA:1.10.1020.10 68 170 1.2E-32 T 06-07-2017 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 17 267 1.6E-67 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 SUPERFAMILY SSF53335 12 285 1.69E-81 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 Gene3D G3DSA:3.40.50.150 175 285 2.4E-58 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 Gene3D G3DSA:3.40.50.150 3 67 2.4E-58 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 TIGRFAM TIGR00571 dam: DNA adenine methylase 12 283 3.3E-90 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APT55_RS09955 b91d4ef67e1d85f99c4c06dd3a0e876a 285 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 194 200 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS04305 d60341b99c08a73b632a76c430ae8f88 390 SUPERFAMILY SSF90257 161 262 2.3E-8 T 06-07-2017 APT55_RS04305 d60341b99c08a73b632a76c430ae8f88 390 Pfam PF15615 TerB-C domain 245 384 8.6E-11 T 06-07-2017 IPR028932 TerB-C domain APT55_RS05290 66e28e5bee866dda111fc494ec3ddda8 164 Pfam PF11320 Protein of unknown function (DUF3122) 17 154 3.2E-44 T 06-07-2017 IPR021469 Protein of unknown function DUF3122 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 48 276 7.3E-107 T 06-07-2017 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 SUPERFAMILY SSF52540 59 292 3.61E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Gene3D G3DSA:1.10.10.10 298 368 5.1E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 294 367 6.8E-33 T 06-07-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 SUPERFAMILY SSF46785 298 371 3.67E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 291 372 3.0E-36 T 06-07-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 65 367 9.1E-138 T 06-07-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 380 157.571 T 06-07-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 SMART SM00382 92 223 2.3E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Gene3D G3DSA:3.40.50.300 59 216 2.1E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11820 939ca0454826d3f1b795110935c1934e 380 Gene3D G3DSA:1.10.8.60 225 295 4.8E-30 T 06-07-2017 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SUPERFAMILY SSF81923 7 158 1.57E-39 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Pfam PF07724 AAA domain (Cdc48 subfamily) 602 767 2.3E-58 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Gene3D G3DSA:1.10.8.60 345 428 2.7E-37 T 06-07-2017 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 773 852 1.1E-26 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SUPERFAMILY SSF52540 552 865 5.87E-89 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Gene3D G3DSA:3.40.50.300 556 784 5.3E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 637 655 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 607 625 4.9E-44 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 714 728 4.9E-44 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 670 4.9E-44 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 4.9E-44 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SMART SM00382 603 770 4.1E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SMART SM00382 200 344 1.5E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 9 863 0.0 T 06-07-2017 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SUPERFAMILY SSF52540 161 551 1.55E-101 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Gene3D G3DSA:1.10.1780.10 5 150 1.9E-42 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Gene3D G3DSA:3.40.50.300 161 344 5.5E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 SMART SM01086 773 863 2.4E-37 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 21 70 3.1E-11 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 96 147 1.2E-12 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Gene3D G3DSA:1.10.8.60 785 859 1.8E-31 T 06-07-2017 APT55_RS00430 8e64978235931ec854b1c8f7a8e5b9a8 874 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 337 2.1E-13 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 235 248 - T 06-07-2017 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 SUPERFAMILY SSF52210 122 292 4.19E-48 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 Gene3D G3DSA:3.40.50.261 119 292 3.4E-60 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 Pfam PF02629 CoA binding domain 7 98 1.6E-16 T 06-07-2017 IPR003781 CoA-binding GO:0048037 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 PRINTS PR01798 Succinyl-CoA synthase signature 239 256 9.1E-19 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 PRINTS PR01798 Succinyl-CoA synthase signature 207 220 9.1E-19 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 PRINTS PR01798 Succinyl-CoA synthase signature 176 194 9.1E-19 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 PRINTS PR01798 Succinyl-CoA synthase signature 81 98 9.1E-19 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 Gene3D G3DSA:3.40.50.720 3 118 1.3E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 Pfam PF00549 CoA-ligase 150 256 2.0E-12 T 06-07-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 SMART SM00881 2 99 4.1E-14 T 06-07-2017 IPR003781 CoA-binding GO:0048037 APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 SUPERFAMILY SSF51735 4 121 9.96E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20195 edf85649c069d64cfb68f2d1095065d3 302 PIRSF PIRSF001553 1 297 5.8E-111 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 APT55_RS31555 bc0231eb92dd259b97c350bdae9f0b0f 594 SUPERFAMILY SSF55874 53 170 7.99E-12 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS31555 bc0231eb92dd259b97c350bdae9f0b0f 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 53 170 7.4E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS31555 bc0231eb92dd259b97c350bdae9f0b0f 594 Gene3D G3DSA:3.30.565.10 54 167 3.8E-10 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS26780 ad45d41cdf5526444e41214d2ab26051 311 Pfam PF00494 Squalene/phytoene synthase 31 293 5.9E-74 T 06-07-2017 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 APT55_RS26780 ad45d41cdf5526444e41214d2ab26051 311 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 140 155 - T 06-07-2017 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT55_RS26780 ad45d41cdf5526444e41214d2ab26051 311 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 183 208 - T 06-07-2017 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT55_RS26780 ad45d41cdf5526444e41214d2ab26051 311 SUPERFAMILY SSF48576 21 309 2.45E-91 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS26780 ad45d41cdf5526444e41214d2ab26051 311 Gene3D G3DSA:1.10.600.10 17 310 2.4E-111 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS15230 6dd9749161c651279445b7257c639909 322 Pfam PF01063 Amino-transferase class IV 44 270 7.2E-31 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS15230 6dd9749161c651279445b7257c639909 322 Gene3D G3DSA:3.20.10.10 139 294 8.9E-33 T 06-07-2017 APT55_RS15230 6dd9749161c651279445b7257c639909 322 SUPERFAMILY SSF56752 13 298 2.22E-57 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS15230 6dd9749161c651279445b7257c639909 322 Gene3D G3DSA:3.30.470.10 15 135 5.6E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 Gene3D G3DSA:3.50.50.60 266 344 9.8E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 Gene3D G3DSA:3.50.50.60 4 174 9.8E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 9.2E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 327 343 9.2E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 9.2E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 9.2E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 9.2E-20 T 06-07-2017 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 SUPERFAMILY SSF51905 265 358 1.3E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 SUPERFAMILY SSF51905 5 168 1.3E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21635 edfc4a6badd349ce3a0b381a51f7e22a 386 Pfam PF01494 FAD binding domain 5 341 4.0E-25 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 Pfam PF01497 Periplasmic binding protein 39 280 7.5E-33 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 56 74 4.3E-11 T 06-07-2017 IPR008091 Ferrichrome-binding periplasmic protein APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 245 262 4.3E-11 T 06-07-2017 IPR008091 Ferrichrome-binding periplasmic protein APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 217 235 4.3E-11 T 06-07-2017 IPR008091 Ferrichrome-binding periplasmic protein APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 283 296 4.3E-11 T 06-07-2017 IPR008091 Ferrichrome-binding periplasmic protein APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 88 103 4.3E-11 T 06-07-2017 IPR008091 Ferrichrome-binding periplasmic protein APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 Gene3D G3DSA:3.40.50.1980 135 304 1.3E-39 T 06-07-2017 APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 Gene3D G3DSA:3.40.50.1980 34 124 8.2E-33 T 06-07-2017 APT55_RS25050 14824a3410ffb747835cf29da6b64c31 305 SUPERFAMILY SSF53807 35 302 5.61E-57 T 06-07-2017 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Pfam PF04539 Sigma-70 region 3 119 185 1.5E-7 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 251 5.2E-33 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 PRINTS PR00046 Major sigma-70 factor signature 222 237 2.9E-6 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 PRINTS PR00046 Major sigma-70 factor signature 57 70 2.9E-6 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 PRINTS PR00046 Major sigma-70 factor signature 237 248 2.9E-6 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 PRINTS PR00046 Major sigma-70 factor signature 205 217 2.9E-6 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Gene3D G3DSA:1.10.10.10 191 251 1.5E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Gene3D G3DSA:1.10.10.10 103 154 3.5E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 57 70 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 SUPERFAMILY SSF88659 106 182 4.8E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 SUPERFAMILY SSF88946 3 101 3.45E-29 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 SUPERFAMILY SSF88659 169 252 2.8E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Gene3D G3DSA:1.10.601.10 12 101 2.8E-22 T 06-07-2017 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Pfam PF04545 Sigma-70, region 4 201 249 3.0E-13 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS23045 082c4401be92b50f86b19ecbf0b71c51 257 Pfam PF04542 Sigma-70 region 2 32 101 8.4E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19890 a903a208642679d7e045e962c310b38f 494 SUPERFAMILY SSF116734 4 219 1.46E-33 T 06-07-2017 APT55_RS19890 a903a208642679d7e045e962c310b38f 494 Pfam PF01420 Type I restriction modification DNA specificity domain 9 180 1.9E-13 T 06-07-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APT55_RS19890 a903a208642679d7e045e962c310b38f 494 Pfam PF01420 Type I restriction modification DNA specificity domain 390 436 2.3E-4 T 06-07-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APT55_RS19890 a903a208642679d7e045e962c310b38f 494 SUPERFAMILY SSF116734 250 469 1.64E-30 T 06-07-2017 APT55_RS27180 42a44539ab3d563ead87e2a063e39312 195 Pfam PF05685 Putative restriction endonuclease 19 189 1.7E-40 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27180 42a44539ab3d563ead87e2a063e39312 195 Gene3D G3DSA:3.90.1570.10 14 191 1.2E-71 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS27180 42a44539ab3d563ead87e2a063e39312 195 SUPERFAMILY SSF52980 13 191 5.9E-53 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Gene3D G3DSA:1.25.40.10 204 276 9.3E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SUPERFAMILY SSF48452 90 292 4.55E-39 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Pfam PF13414 TPR repeat 89 118 1.8E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Pfam PF13414 TPR repeat 151 190 1.4E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Gene3D G3DSA:1.25.40.10 145 203 1.8E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Gene3D G3DSA:1.25.40.10 74 144 1.5E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Pfam PF13181 Tetratricopeptide repeat 245 273 0.1 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 Pfam PF13431 Tetratricopeptide repeat 199 231 1.3E-5 T 06-07-2017 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 244 277 11.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 176 209 1.5E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 142 175 3.0E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 108 141 2.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 210 243 0.0033 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS04325 757a31a988592fbc3c953ec3d7adee46 294 SMART SM00028 74 107 0.0025 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 Gene3D G3DSA:3.40.605.10 15 228 4.3E-61 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 Gene3D G3DSA:3.40.605.10 378 417 4.3E-61 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 SUPERFAMILY SSF53720 15 417 9.7E-75 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 Pfam PF00171 Aldehyde dehydrogenase family 15 228 4.0E-7 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 Gene3D G3DSA:3.40.309.10 231 376 7.4E-16 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 10 418 30.595 T 06-07-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS20075 6f3720f60595ec112a9e6e167dbf04e6 418 PIRSF PIRSF000151 8 418 9.7E-129 T 06-07-2017 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APT55_RS05745 783492ce5c60921a4028ea55dae342f0 378 TIGRFAM TIGR01964 chpXY: CO2 hydration protein 74 370 2.1E-148 T 06-07-2017 IPR010220 CO2 hydration APT55_RS05745 783492ce5c60921a4028ea55dae342f0 378 Pfam PF10216 CO2 hydration protein (ChpXY) 15 365 5.8E-188 T 06-07-2017 IPR010220 CO2 hydration APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 SMART SM00448 3 116 1.0E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 Gene3D G3DSA:1.10.10.10 165 227 5.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 Gene3D G3DSA:3.40.50.2300 5 126 1.0E-41 T 06-07-2017 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 SUPERFAMILY SSF46894 167 228 1.19E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 168 222 3.0E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 SMART SM00421 165 222 1.8E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 SUPERFAMILY SSF52172 6 187 1.71E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 210 6.6E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 182 6.6E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 198 6.6E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09280 7d74185f8372eedf0f15dd22a37e2bd4 233 Pfam PF00072 Response regulator receiver domain 6 116 6.2E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14910 4c3aebde20eac6a0125f8780cbe49d8f 361 Gene3D G3DSA:3.40.50.2000 184 318 1.0E-20 T 06-07-2017 APT55_RS14910 4c3aebde20eac6a0125f8780cbe49d8f 361 SUPERFAMILY SSF53756 19 352 1.71E-51 T 06-07-2017 APT55_RS14910 4c3aebde20eac6a0125f8780cbe49d8f 361 Pfam PF00534 Glycosyl transferases group 1 183 320 8.1E-26 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS16655 154141593f0e4f6860916a7199156a38 586 PIRSF PIRSF004803 1 566 5.3E-234 T 06-07-2017 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 APT55_RS16655 154141593f0e4f6860916a7199156a38 586 Pfam PF00753 Metallo-beta-lactamase superfamily 24 179 2.2E-11 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS16655 154141593f0e4f6860916a7199156a38 586 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 367 414 1.9E-7 T 06-07-2017 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain APT55_RS16655 154141593f0e4f6860916a7199156a38 586 Hamap MF_01491 Ribonuclease J [rnj]. 5 566 43.156 T 06-07-2017 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 APT55_RS16655 154141593f0e4f6860916a7199156a38 586 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 10 561 8.0E-208 T 06-07-2017 IPR004613 Ribonuclease J GO:0003723|GO:0046872 APT55_RS16655 154141593f0e4f6860916a7199156a38 586 Gene3D G3DSA:3.60.15.10 7 259 4.9E-69 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS16655 154141593f0e4f6860916a7199156a38 586 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 368 396 - T 06-07-2017 IPR001587 Ribonuclease J, conserved site APT55_RS16655 154141593f0e4f6860916a7199156a38 586 SMART SM00849 22 219 2.8E-20 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS16655 154141593f0e4f6860916a7199156a38 586 SUPERFAMILY SSF56281 10 428 2.29E-84 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 SUPERFAMILY SSF52540 52 388 4.58E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 Gene3D G3DSA:3.30.450.90 54 151 3.9E-6 T 06-07-2017 APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 Pfam PF00437 Type II/IV secretion system protein 61 320 1.9E-44 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 245 259 - T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 Gene3D G3DSA:3.40.50.300 153 391 1.2E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 55 392 2.0E-129 T 06-07-2017 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 APT55_RS01440 1205f0506670964b746757bcc8c87f76 425 SMART SM00382 174 299 2.5E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 Gene3D G3DSA:3.40.50.180 162 350 3.6E-75 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 349 37.104 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 Pfam PF01339 CheB methylesterase 165 344 6.1E-61 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 Gene3D G3DSA:3.40.50.2300 1 112 4.2E-32 T 06-07-2017 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 SUPERFAMILY SSF52172 2 111 3.42E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 Pfam PF00072 Response regulator receiver domain 7 110 2.0E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 SMART SM00448 5 123 5.4E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 PIRSF PIRSF000876 2 353 8.7E-124 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10315 09365009a9fb2caeaf732fe00bd0b4ff 359 SUPERFAMILY SSF52738 161 350 7.98E-66 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00388 674 740 1.1E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF13426 PAS domain 34 131 0.0038 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF13426 PAS domain 285 388 2.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55785 35 133 2.39E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.565.10 741 929 9.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55785 156 262 3.22E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.450.20 509 662 8.6E-40 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55785 515 645 1.3E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00086 347 389 1.1 T 06-07-2017 IPR001610 PAC motif APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00086 605 647 2.8E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00086 476 518 2.0E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00086 219 261 1.3E-10 T 06-07-2017 IPR001610 PAC motif APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF52172 953 1074 1.71E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.450.20 38 136 4.7E-8 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.450.20 152 257 2.9E-26 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00448 954 1069 3.1E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55785 258 386 8.38E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 786 926 1.5E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55785 387 516 3.21E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.40.50.2300 952 1076 1.3E-32 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00091 401 469 3.7E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00091 612 675 67.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00091 146 213 14.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00091 273 341 1.8E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00091 530 598 0.069 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55874 729 821 3.64E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF55874 850 925 3.64E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:1.10.287.130 667 736 1.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF00989 PAS fold 404 515 7.0E-12 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 268 5.6E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 524 2.8E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 270 396 1.6E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 526 653 3.3E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.450.20 388 508 4.4E-21 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF00072 Response regulator receiver domain 956 1069 2.5E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF00512 His Kinase A (phospho-acceptor) domain 674 739 3.1E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SUPERFAMILY SSF47384 659 741 1.63E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF08447 PAS fold 172 255 1.5E-18 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Pfam PF08447 PAS fold 553 639 3.5E-19 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 Gene3D G3DSA:3.30.450.20 258 385 3.5E-16 T 06-07-2017 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 PRINTS PR00344 Bacterial sensor protein C-terminal signature 869 879 1.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 PRINTS PR00344 Bacterial sensor protein C-terminal signature 886 904 1.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 PRINTS PR00344 Bacterial sensor protein C-terminal signature 851 865 1.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 PRINTS PR00344 Bacterial sensor protein C-terminal signature 911 924 1.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30875 b61070c99cdaa14e51bc660f49823f9a 1083 SMART SM00387 786 927 9.0E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 SUPERFAMILY SSF51905 468 501 2.0E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 SUPERFAMILY SSF51905 1 322 2.0E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 73 1.0E-13 T 06-07-2017 APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 Gene3D G3DSA:3.50.50.60 452 498 5.8E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 Gene3D G3DSA:3.50.50.60 170 304 5.8E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11515 64060494465512be217b57e5c85f5cfb 525 Gene3D G3DSA:3.50.50.60 2 85 5.8E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11485 0ac27de75467567488261dbd8cc31a81 662 SUPERFAMILY SSF52540 184 335 3.43E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11485 0ac27de75467567488261dbd8cc31a81 662 Pfam PF05729 NACHT domain 184 334 1.8E-20 T 06-07-2017 APT55_RS11485 0ac27de75467567488261dbd8cc31a81 662 Gene3D G3DSA:3.40.50.300 154 300 2.7E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28245 be31150fd812f429289c34bbe69a629f 253 SUPERFAMILY SSF55068 62 231 2.22E-67 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28245 be31150fd812f429289c34bbe69a629f 253 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 69 218 2.4E-53 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28245 be31150fd812f429289c34bbe69a629f 253 Pfam PF01625 Peptide methionine sulfoxide reductase 69 221 1.0E-58 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28245 be31150fd812f429289c34bbe69a629f 253 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 67 227 35.233 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28245 be31150fd812f429289c34bbe69a629f 253 Gene3D G3DSA:3.30.1060.10 59 220 1.2E-68 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS27920 a7e62b5cedb64c445edcebedaec9cb8a 237 Gene3D G3DSA:3.40.50.150 71 225 9.1E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27920 a7e62b5cedb64c445edcebedaec9cb8a 237 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 77 193 1.5E-18 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS27920 a7e62b5cedb64c445edcebedaec9cb8a 237 SUPERFAMILY SSF53335 70 219 1.13E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27920 a7e62b5cedb64c445edcebedaec9cb8a 237 Pfam PF05050 Methyltransferase FkbM domain 71 217 5.7E-15 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:1.10.287.130 941 997 1.5E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF00512 His Kinase A (phospho-acceptor) domain 947 1011 3.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 268 397 2.27E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 525 656 2.09E-24 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.565.10 998 1173 2.3E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 281 350 0.02 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 677 747 61.0 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 540 608 1.1E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 411 487 0.0082 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 151 218 2.9E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00091 808 872 3.8 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1061 1173 4.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:1.20.120.620 33 130 2.1E-17 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 685 798 7.5E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.40.50.2300 1192 1335 1.4E-35 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF08448 PAS fold 439 530 4.2E-10 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF52172 1193 1334 9.96E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF13493 Domain of unknown function (DUF4118) 37 140 6.9E-23 T 06-07-2017 IPR025201 Sensor protein KdpD, transmembrane domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF13426 PAS domain 163 257 1.2E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF00072 Response regulator receiver domain 1197 1327 3.3E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00388 946 1012 1.9E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF47384 931 1013 4.32E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF08447 PAS fold 305 392 4.1E-12 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF08447 PAS fold 565 652 5.1E-22 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF08447 PAS fold 704 789 1.0E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Pfam PF08447 PAS fold 831 912 1.3E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00387 1061 1174 5.6E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00448 1195 1327 3.3E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 395 517 4.19E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 163 271 1.22E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 407 525 2.7E-18 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 667 804 1.6E-29 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 263 406 1.5E-38 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 805 940 7.1E-26 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 526 666 8.7E-40 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00086 754 796 8.2E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00086 615 658 3.6E-9 T 06-07-2017 IPR001610 PAC motif APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00086 877 919 9.4E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00086 225 262 3.4 T 06-07-2017 IPR001610 PAC motif APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SMART SM00086 356 399 0.035 T 06-07-2017 IPR001610 PAC motif APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 536 664 1.3E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 726 803 5.2E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 267 3.4E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 277 406 8.9E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55874 1001 1174 1.44E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 Gene3D G3DSA:3.30.450.20 145 258 1.3E-13 T 06-07-2017 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1133 1151 2.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1171 2.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1098 1112 2.1E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14385 407e2f4e032dd350908ce0850365a7c3 1338 SUPERFAMILY SSF55785 793 917 1.22E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:3.40.50.980 457 609 1.8E-57 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SUPERFAMILY SSF52777 19 185 2.33E-38 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SUPERFAMILY SSF56801 420 979 1.96E-163 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 ProSitePatterns PS00012 Phosphopantetheine attachment site. 990 1005 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:3.40.50.1820 1237 1302 8.9E-41 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:3.40.50.1820 1042 1153 8.9E-41 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:2.30.38.10 773 854 1.3E-28 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF13193 AMP-binding enzyme C-terminal domain 872 940 2.0E-8 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SUPERFAMILY SSF47336 961 1032 2.75E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF00975 Thioesterase domain 1054 1148 7.8E-22 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:1.10.1200.10 970 1035 5.1E-26 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF00501 AMP-binding enzyme 465 864 2.8E-104 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SUPERFAMILY SSF52777 194 449 8.56E-53 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF00550 Phosphopantetheine attachment site 967 1031 2.9E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SMART SM00823 Phosphopantetheine attachment site 966 1035 1.9E-5 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF13745 HxxPF-repeated domain 325 409 7.2E-14 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:3.30.300.30 859 969 3.9E-37 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 PRINTS PR00154 AMP-binding signature 608 616 8.9E-5 T 06-07-2017 IPR020459 AMP-binding APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 PRINTS PR00154 AMP-binding signature 596 607 8.9E-5 T 06-07-2017 IPR020459 AMP-binding APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 483 888 2.1E-138 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 SUPERFAMILY SSF53474 1034 1300 6.49E-45 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Gene3D G3DSA:3.40.50.980 610 762 9.8E-45 T 06-07-2017 APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 ProSitePatterns PS00455 Putative AMP-binding domain signature. 601 612 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS01720 fc8d25c02e86b52de9300cb86776bb40 1308 Pfam PF00668 Condensation domain 16 303 2.2E-57 T 06-07-2017 IPR001242 Condensation domain APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 SUPERFAMILY SSF54919 1 148 4.45E-60 T 06-07-2017 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 Gene3D G3DSA:3.30.70.141 2 147 2.1E-63 T 06-07-2017 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 Pfam PF00334 Nucleoside diphosphate kinase 2 135 2.6E-56 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 SMART SM00562 1 138 9.6E-88 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 06-07-2017 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 2.1E-51 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 2.1E-51 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 2.1E-51 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 2.1E-51 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 2.1E-51 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS12200 61be39a19dcf49a517cb0a1049f2c92a 149 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 36.743 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT55_RS30385 7122c74abba743fe4e5fa1810bf239bb 1431 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 14 279 3.5E-62 T 06-07-2017 IPR014059 Conjugative relaxase, N-terminal APT55_RS30385 7122c74abba743fe4e5fa1810bf239bb 1431 SUPERFAMILY SSF55464 1 282 1.19E-70 T 06-07-2017 APT55_RS30385 7122c74abba743fe4e5fa1810bf239bb 1431 Pfam PF08751 TrwC relaxase 26 277 1.4E-72 T 06-07-2017 IPR014862 TrwC relaxase APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 Pfam PF01383 CpcD/allophycocyanin linker domain 16 73 2.1E-21 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 SUPERFAMILY SSF52343 252 413 9.69E-41 T 06-07-2017 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 SMART SM01094 16 74 3.0E-24 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 Pfam PF00175 Oxidoreductase NAD-binding domain 262 380 1.7E-30 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 Gene3D G3DSA:3.40.50.80 249 412 2.3E-41 T 06-07-2017 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PIRSF PIRSF501178 16 413 1.3E-171 T 06-07-2017 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 Gene3D G3DSA:2.40.30.10 113 246 1.1E-49 T 06-07-2017 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 225 234 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 187 194 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 307 318 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 164 174 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 367 375 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 261 280 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 343 359 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 295 304 2.0E-25 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 SUPERFAMILY SSF63380 112 251 9.79E-42 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS20575 ffb7fc02fc42410ed0ed695051658ca4 413 PIRSF PIRSF000361 26 413 6.0E-126 T 06-07-2017 IPR015701 Ferredoxin--NADP reductase GO:0016491|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 414 590 1.1E-87 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 SUPERFAMILY SSF52518 21 384 4.15E-79 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 PIRSF PIRSF017245 2 804 0.0 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 ProSitePatterns PS60002 Phosphoketolase signature 1. 159 165 - T 06-07-2017 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 Hamap MF_01403 Probable phosphoketolase. 20 804 41.429 T 06-07-2017 IPR023962 Probable phosphoketolase APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 Gene3D G3DSA:3.40.50.970 22 381 5.2E-22 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 Pfam PF09363 XFP C-terminal domain 601 802 1.5E-94 T 06-07-2017 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 Pfam PF09364 XFP N-terminal domain 23 399 3.5E-192 T 06-07-2017 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 ProSitePatterns PS60003 Phosphoketolase signature 2. 172 190 - T 06-07-2017 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 APT55_RS20665 6123b0b352c9c97b9f32c0e2dd574973 835 SUPERFAMILY SSF52518 391 604 1.12E-25 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 Gene3D G3DSA:3.40.50.300 359 594 7.6E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 Gene3D G3DSA:1.20.1560.10 23 345 1.5E-19 T 06-07-2017 APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 Pfam PF00005 ABC transporter 376 530 5.6E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 SUPERFAMILY SSF52540 351 600 4.18E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 SMART SM00382 385 582 1.4E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 SUPERFAMILY SSF90123 21 322 3.01E-28 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS17975 ccd2f99b12fe1ca08c929543684c82c7 605 Pfam PF00664 ABC transporter transmembrane region 37 303 8.7E-9 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS30895 91162dda2bddee63ed254e0edbf9d177 43 Pfam PF13586 Transposase DDE domain 1 40 1.3E-12 T 06-07-2017 IPR025668 Transposase DDE domain APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 151 172 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 SUPERFAMILY SSF50129 1 156 7.61E-33 T 06-07-2017 IPR011032 GroES-like APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 Pfam PF13602 Zinc-binding dehydrogenase 193 320 2.3E-24 T 06-07-2017 APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 Gene3D G3DSA:3.40.50.720 158 245 6.1E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 Gene3D G3DSA:3.90.180.10 1 157 2.9E-45 T 06-07-2017 IPR011032 GroES-like APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 SUPERFAMILY SSF51735 124 297 1.69E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 SMART SM00829 10 321 2.8E-16 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS24985 73911ced65bed22a439b25fa17d0d152 323 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 134 4.8E-9 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS07340 c511e285935d9b6389e4af138bbe9094 205 SUPERFAMILY SSF53335 35 183 2.94E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07340 c511e285935d9b6389e4af138bbe9094 205 Pfam PF08241 Methyltransferase domain 38 133 3.1E-21 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS07340 c511e285935d9b6389e4af138bbe9094 205 Gene3D G3DSA:3.40.50.150 34 184 3.9E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08145 ae56aa942d9cf7a6e8021d974d690408 226 Pfam PF09366 Protein of unknown function (DUF1997) 59 212 8.0E-45 T 06-07-2017 IPR018971 Protein of unknown function DUF1997 APT55_RS04750 b961e617a558d705180d92d7769aa840 253 SUPERFAMILY SSF54534 116 214 4.25E-18 T 06-07-2017 APT55_RS04750 b961e617a558d705180d92d7769aa840 253 SUPERFAMILY SSF109998 21 155 1.69E-10 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS04750 b961e617a558d705180d92d7769aa840 253 Pfam PF00639 PPIC-type PPIASE domain 136 214 1.4E-10 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS04750 b961e617a558d705180d92d7769aa840 253 Gene3D G3DSA:3.10.50.40 126 235 2.7E-17 T 06-07-2017 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.877 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 Pfam PF01165 Ribosomal protein S21 3 57 4.7E-22 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 06-07-2017 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.6E-12 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.6E-12 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.6E-12 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.6E-12 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 58 5.0E-14 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01810 a2480cb2b0584eaf7b2585e2d59cb108 59 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 57 1.6E-22 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS23830 460d61408b6dcce6d0b9bc32ae9eb479 115 Gene3D G3DSA:2.30.30.110 3 114 7.3E-27 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS23830 460d61408b6dcce6d0b9bc32ae9eb479 115 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 112 6.1E-22 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS23830 460d61408b6dcce6d0b9bc32ae9eb479 115 PIRSF PIRSF033490 1 115 5.6E-33 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS23830 460d61408b6dcce6d0b9bc32ae9eb479 115 SUPERFAMILY SSF50118 1 115 3.92E-25 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 ProSitePatterns PS01134 FtsZ protein signature 1. 95 129 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 SUPERFAMILY SSF55307 255 369 3.66E-44 T 06-07-2017 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 60 410 38.582 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 Gene3D G3DSA:3.30.1330.20 266 371 1.0E-48 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 64 224 1.3E-40 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 ProSitePatterns PS01135 FtsZ protein signature 2. 148 169 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 Gene3D G3DSA:3.40.50.1440 63 265 3.3E-94 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 SMART SM00864 64 256 8.1E-110 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 SUPERFAMILY SSF52490 63 259 1.15E-68 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 Pfam PF12327 FtsZ family, C-terminal domain 273 366 2.4E-35 T 06-07-2017 IPR024757 Cell division protein FtsZ, C-terminal APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 PRINTS PR00423 Cell division protein FtsZ signature 263 284 1.1E-51 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 PRINTS PR00423 Cell division protein FtsZ signature 177 198 1.1E-51 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 PRINTS PR00423 Cell division protein FtsZ signature 240 262 1.1E-51 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 PRINTS PR00423 Cell division protein FtsZ signature 149 169 1.1E-51 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 SMART SM00865 258 375 1.1E-55 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 APT55_RS19080 b869592e2dd13291edc8dab0dfd61857 425 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 61 375 1.2E-135 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 APT55_RS01150 8b4cdc20154452dea59a3bea23b03a6e 122 Gene3D G3DSA:3.40.50.2300 5 121 2.1E-30 T 06-07-2017 APT55_RS01150 8b4cdc20154452dea59a3bea23b03a6e 122 Pfam PF00072 Response regulator receiver domain 6 117 8.2E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01150 8b4cdc20154452dea59a3bea23b03a6e 122 SMART SM00448 4 117 8.4E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01150 8b4cdc20154452dea59a3bea23b03a6e 122 SUPERFAMILY SSF52172 5 121 2.7E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 Gene3D G3DSA:3.30.450.40 188 353 1.1E-43 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 Pfam PF01628 HrcA protein C terminal domain 110 339 4.2E-64 T 06-07-2017 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 SUPERFAMILY SSF55781 76 354 6.28E-59 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 SUPERFAMILY SSF46785 7 86 2.72E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 9 351 1.1E-81 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 6 346 27.978 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 Gene3D G3DSA:1.10.10.10 7 87 8.4E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10350 c3b51e9f7f68605cd86ca53ab0a5af6c 354 PIRSF PIRSF005485 5 354 2.6E-118 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 9.1E-289 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 SUPERFAMILY SSF100920 379 535 1.31E-57 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.30.420.40 189 223 7.1E-37 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.30.420.40 313 354 7.1E-37 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Pfam PF00012 Hsp70 protein 4 600 1.9E-252 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:2.60.34.10 385 526 1.4E-66 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 SUPERFAMILY SSF53067 1 181 2.41E-62 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.30.30.30 39 122 1.0E-21 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 136 156 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 328 344 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 383 402 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 PRINTS PR00301 70kDa heat shock protein signature 196 206 1.4E-75 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.30.420.40 123 188 2.2E-59 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.30.420.40 4 38 2.2E-59 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 SUPERFAMILY SSF53067 185 377 6.05E-66 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:3.90.640.10 224 308 3.5E-28 T 06-07-2017 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 648 36.41 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 Gene3D G3DSA:1.20.1270.10 527 600 1.5E-17 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 APT55_RS12495 2be5adafa162bd59a84f9f7dc35c663c 649 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 SUPERFAMILY SSF53850 34 339 1.03E-86 T 06-07-2017 APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 Pfam PF12849 PBP superfamily domain 32 314 5.4E-58 T 06-07-2017 IPR024370 PBP domain APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 PIRSF PIRSF002756 1 344 3.8E-110 T 06-07-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 35 339 9.3E-99 T 06-07-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 Gene3D G3DSA:3.40.190.10 33 177 3.2E-52 T 06-07-2017 APT55_RS11435 618370bf8b0fca80a633824ff89c9943 345 Gene3D G3DSA:3.40.190.10 211 337 2.3E-23 T 06-07-2017 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 Gene3D G3DSA:3.40.50.720 35 304 1.9E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 240 449 4.0E-47 T 06-07-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 SUPERFAMILY SSF48179 306 498 5.1E-31 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 PRINTS PR00084 Mannitol dehydrogenase signature 241 254 5.0E-16 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 PRINTS PR00084 Mannitol dehydrogenase signature 48 58 5.0E-16 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 PRINTS PR00084 Mannitol dehydrogenase signature 271 286 5.0E-16 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 PRINTS PR00084 Mannitol dehydrogenase signature 202 215 5.0E-16 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 Gene3D G3DSA:1.10.1040.10 305 498 4.1E-36 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 47 211 4.0E-33 T 06-07-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 APT55_RS28015 f0e9c8885621220f72b9829bcaddf8f5 503 SUPERFAMILY SSF51735 35 305 1.57E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 SMART SM00862 148 223 8.9E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 Gene3D G3DSA:1.10.10.10 125 225 1.7E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 Pfam PF00072 Response regulator receiver domain 6 116 1.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 SMART SM00448 4 115 2.9E-44 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 Gene3D G3DSA:3.40.50.2300 5 124 1.0E-39 T 06-07-2017 APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 6.8E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS28355 f51c3b72f074a68c298d2feb5ec5d931 226 SUPERFAMILY SSF52172 4 181 2.89E-44 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 Gene3D G3DSA:1.10.357.10 1 187 1.6E-33 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 60 5.6E-18 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 56 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 SUPERFAMILY SSF46689 3 67 4.64E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.2E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS16125 4c0d0d7a2a3e36dc35a6aa53c4e169c9 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.2E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS23005 96eb2130d944d1e23b1f1598ef4af629 310 Gene3D G3DSA:2.60.120.620 76 249 1.4E-14 T 06-07-2017 APT55_RS23005 96eb2130d944d1e23b1f1598ef4af629 310 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 70 238 1.0E-5 T 06-07-2017 IPR008775 Phytanoyl-CoA dioxygenase APT55_RS23005 96eb2130d944d1e23b1f1598ef4af629 310 SUPERFAMILY SSF51197 76 249 8.51E-18 T 06-07-2017 APT55_RS20635 ed67af6e92530c3c15dd3ad2f8224f69 222 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 45 166 1.4E-32 T 06-07-2017 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS20635 ed67af6e92530c3c15dd3ad2f8224f69 222 SMART SM00563 57 169 7.7E-29 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS20635 ed67af6e92530c3c15dd3ad2f8224f69 222 SUPERFAMILY SSF69593 22 219 6.93E-51 T 06-07-2017 APT55_RS20635 ed67af6e92530c3c15dd3ad2f8224f69 222 Pfam PF01553 Acyltransferase 44 166 7.9E-23 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS20635 ed67af6e92530c3c15dd3ad2f8224f69 222 Gene3D G3DSA:3.40.1130.10 13 221 5.3E-44 T 06-07-2017 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SUPERFAMILY SSF55781 131 250 3.73E-5 T 06-07-2017 IPR029016 GAF domain-like APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Gene3D G3DSA:3.40.50.2300 658 791 5.2E-36 T 06-07-2017 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SUPERFAMILY SSF55785 270 388 9.57E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Pfam PF00072 Response regulator receiver domain 662 773 1.1E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Gene3D G3DSA:1.10.287.130 417 472 2.0E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SMART SM00387 523 634 1.6E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SMART SM00388 410 476 1.0E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Gene3D G3DSA:3.30.565.10 477 637 1.7E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Pfam PF00512 His Kinase A (phospho-acceptor) domain 410 475 2.4E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 631 2.0E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 574 2.0E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 612 2.0E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 588 2.0E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 524 632 2.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SUPERFAMILY SSF55874 465 630 9.69E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SUPERFAMILY SSF47384 397 477 2.94E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SUPERFAMILY SSF52172 658 786 8.97E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Gene3D G3DSA:3.30.450.20 272 416 2.9E-10 T 06-07-2017 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 SMART SM00448 660 773 4.8E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03580 ab5aa01170a68dde6fd3f017ac710140 868 Gene3D G3DSA:3.30.450.40 127 251 5.8E-4 T 06-07-2017 IPR029016 GAF domain-like APT55_RS15775 16144a0c701f49d5bf67e086ce69f852 154 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 83 128 1.1E-15 T 06-07-2017 IPR010093 SinI-like, DNA-binding domain GO:0003677 APT55_RS15775 16144a0c701f49d5bf67e086ce69f852 154 Pfam PF12728 Helix-turn-helix domain 83 130 2.0E-11 T 06-07-2017 APT55_RS30340 3f65124a6a9be1322806829e60094575 151 Gene3D G3DSA:3.40.630.30 7 150 9.9E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30340 3f65124a6a9be1322806829e60094575 151 SUPERFAMILY SSF55729 8 142 8.89E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30340 3f65124a6a9be1322806829e60094575 151 Pfam PF00583 Acetyltransferase (GNAT) family 58 134 5.0E-8 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS15145 f52d769a8be6212ee9f1e3bf8c5a6853 303 Gene3D G3DSA:3.40.50.720 1 242 1.4E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15145 f52d769a8be6212ee9f1e3bf8c5a6853 303 Pfam PF08338 Domain of unknown function (DUF1731) 255 301 9.2E-19 T 06-07-2017 IPR013549 Domain of unknown function DUF1731 APT55_RS15145 f52d769a8be6212ee9f1e3bf8c5a6853 303 Pfam PF13460 NAD(P)H-binding 7 219 3.5E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15145 f52d769a8be6212ee9f1e3bf8c5a6853 303 SUPERFAMILY SSF51735 1 296 1.52E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15145 f52d769a8be6212ee9f1e3bf8c5a6853 303 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 298 4.0E-105 T 06-07-2017 IPR010099 Epimerase family protein SDR39U1 APT55_RS27010 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS27010 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS27010 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS04955 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS04955 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS04955 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS28320 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS28320 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS28320 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS04590 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS04590 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS04590 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS31270 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS31270 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS31270 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS08385 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS08385 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS08385 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS01200 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS01200 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS01200 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS14760 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS14760 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS14760 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS03175 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS03175 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS03175 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS13835 cbfe7c4d022c7c04a487ade71ce90c8d 380 Gene3D G3DSA:3.90.350.10 147 279 2.2E-7 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS13835 cbfe7c4d022c7c04a487ade71ce90c8d 380 Pfam PF01609 Transposase DDE domain 140 299 4.9E-12 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS13835 cbfe7c4d022c7c04a487ade71ce90c8d 380 SUPERFAMILY SSF53098 54 341 1.52E-29 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS15125 551a0b9eb4ca629a942c3afbf456a96f 294 SUPERFAMILY SSF51366 39 293 2.24E-86 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS15125 551a0b9eb4ca629a942c3afbf456a96f 294 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 30 293 35.741 T 06-07-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APT55_RS15125 551a0b9eb4ca629a942c3afbf456a96f 294 Pfam PF00218 Indole-3-glycerol phosphate synthase 32 291 7.2E-89 T 06-07-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APT55_RS15125 551a0b9eb4ca629a942c3afbf456a96f 294 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 81 99 - T 06-07-2017 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 APT55_RS15125 551a0b9eb4ca629a942c3afbf456a96f 294 Gene3D G3DSA:3.20.20.70 30 293 1.6E-104 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS12485 1e6544503d9687e5f50650f3651c5731 77 Gene3D G3DSA:3.30.110.40 9 76 4.7E-19 T 06-07-2017 IPR001455 TusA-like domain APT55_RS12485 1e6544503d9687e5f50650f3651c5731 77 SUPERFAMILY SSF64307 7 77 6.28E-19 T 06-07-2017 IPR001455 TusA-like domain APT55_RS12485 1e6544503d9687e5f50650f3651c5731 77 Pfam PF01206 Sulfurtransferase TusA 9 76 9.6E-17 T 06-07-2017 IPR001455 TusA-like domain APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 SUPERFAMILY SSF82649 2 137 4.45E-39 T 06-07-2017 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 PIRSF PIRSF000375 1 294 3.6E-115 T 06-07-2017 IPR016217 Nitrogen fixation, NifU APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 SUPERFAMILY SSF117916 212 293 1.59E-22 T 06-07-2017 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 TIGRFAM TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU 1 294 5.0E-129 T 06-07-2017 IPR010238 NIF system FeS cluster assembly, NifU GO:0005506|GO:0016226|GO:0051536 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 232 294 1.0E-21 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 Pfam PF01106 NifU-like domain 226 286 8.9E-23 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 Pfam PF01592 NifU-like N terminal domain 3 131 1.0E-51 T 06-07-2017 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 Pfam PF04324 BFD-like [2Fe-2S] binding domain 142 191 2.3E-16 T 06-07-2017 IPR007419 BFD-like [2Fe-2S]-binding domain APT55_RS11620 ad888d675bba189584dd36693a74ec65 294 Gene3D G3DSA:3.90.1010.10 3 133 5.8E-39 T 06-07-2017 APT55_RS13430 3e8d85c0272167322f2a0a5059c11b45 172 TIGRFAM TIGR01339 phycocy_beta: phycocyanin, beta subunit 3 172 2.1E-96 T 06-07-2017 IPR006247 Phycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS13430 3e8d85c0272167322f2a0a5059c11b45 172 Gene3D G3DSA:1.10.490.20 1 169 5.6E-68 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13430 3e8d85c0272167322f2a0a5059c11b45 172 PIRSF PIRSF000081 1 172 4.0E-62 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13430 3e8d85c0272167322f2a0a5059c11b45 172 Pfam PF00502 Phycobilisome protein 7 169 4.6E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13430 3e8d85c0272167322f2a0a5059c11b45 172 SUPERFAMILY SSF46458 1 169 3.82E-59 T 06-07-2017 IPR009050 Globin-like APT55_RS27985 eef92b04efd1087eefc72813f58c1409 387 Pfam PF00557 Metallopeptidase family M24 163 357 4.7E-11 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS27985 eef92b04efd1087eefc72813f58c1409 387 Gene3D G3DSA:3.90.230.10 158 368 3.0E-15 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS27985 eef92b04efd1087eefc72813f58c1409 387 SUPERFAMILY SSF55920 158 368 1.31E-20 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS04775 e2e0b85ae11d86f83e04f7ed3a36f667 492 SMART SM00646 112 228 1.1E-5 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS04775 e2e0b85ae11d86f83e04f7ed3a36f667 492 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 356 479 1.7E-12 T 06-07-2017 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 APT55_RS04775 e2e0b85ae11d86f83e04f7ed3a36f667 492 SUPERFAMILY SSF53187 83 228 1.26E-12 T 06-07-2017 APT55_RS04775 e2e0b85ae11d86f83e04f7ed3a36f667 492 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 82 227 1.5E-13 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS04775 e2e0b85ae11d86f83e04f7ed3a36f667 492 Gene3D G3DSA:3.40.630.40 81 229 1.9E-16 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS13765 2a1582ef711ac999e3f456b960bae2c0 241 SUPERFAMILY SSF55811 58 230 2.62E-17 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS13765 2a1582ef711ac999e3f456b960bae2c0 241 Gene3D G3DSA:3.90.79.10 61 232 2.7E-21 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS16165 164324daad81dac8c729e6250e691938 88 Hamap MF_00474 Photosystem I reaction center subunit PsaK [psaK]. 15 88 20.575 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS16165 164324daad81dac8c729e6250e691938 88 SUPERFAMILY SSF81563 26 82 4.58E-19 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS16165 164324daad81dac8c729e6250e691938 88 ProSitePatterns PS01026 Photosystem I psaG and psaK proteins signature. 58 75 - T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS16165 164324daad81dac8c729e6250e691938 88 TIGRFAM TIGR03049 PS_I_psaK: photosystem I reaction center subunit PsaK 6 88 7.5E-32 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS16165 164324daad81dac8c729e6250e691938 88 Gene3D G3DSA:1.20.860.20 26 88 7.3E-29 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS16165 164324daad81dac8c729e6250e691938 88 Pfam PF01241 Photosystem I psaG / psaK 20 87 3.2E-21 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Gene3D G3DSA:3.40.50.300 268 397 4.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF52540 1129 1215 1.35E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF52540 156 271 1.35E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF52540 2 92 1.35E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Gene3D G3DSA:3.40.50.300 1097 1220 2.9E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Gene3D G3DSA:3.40.50.300 1055 1056 2.9E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Gene3D G3DSA:3.40.50.300 2 115 2.9E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Gene3D G3DSA:3.40.50.300 166 220 2.9E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SMART SM00968 580 697 1.8E-40 T 06-07-2017 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1232 19.959 T 06-07-2017 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF75553 542 729 1.24E-48 T 06-07-2017 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 TIGRFAM TIGR02169 SMC_prok_A: chromosome segregation protein SMC 2 1230 0.0 T 06-07-2017 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 PIRSF PIRSF005719 1 1233 1.3E-236 T 06-07-2017 IPR024704 Structural maintenance of chromosomes protein APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Pfam PF06470 SMC proteins Flexible Hinge Domain 580 695 3.5E-29 T 06-07-2017 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1221 6.1E-61 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF52540 796 897 4.99E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23675 d52202b0a9a0a2c25023851845849b4f 1234 SUPERFAMILY SSF52540 1029 1220 4.99E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18650 384aca6fa79cd7d2ceddcc25e49ee9d7 340 Gene3D G3DSA:3.60.21.10 1 207 4.4E-46 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS18650 384aca6fa79cd7d2ceddcc25e49ee9d7 340 Pfam PF00149 Calcineurin-like phosphoesterase 1 104 3.4E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS18650 384aca6fa79cd7d2ceddcc25e49ee9d7 340 SUPERFAMILY SSF56300 1 202 5.29E-44 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17200 5a13161e401c787a3fb2cde37ae9e35d 232 Gene3D G3DSA:2.60.130.10 29 217 1.4E-53 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 APT55_RS17200 5a13161e401c787a3fb2cde37ae9e35d 232 SUPERFAMILY SSF49482 33 206 1.83E-49 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 APT55_RS17200 5a13161e401c787a3fb2cde37ae9e35d 232 Pfam PF00775 Dioxygenase 52 175 8.0E-15 T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Gene3D G3DSA:3.40.50.880 51 239 1.6E-63 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00096 Glutamine amidotransferase superfamily signature 97 106 6.0E-8 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00096 Glutamine amidotransferase superfamily signature 212 225 6.0E-8 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00096 Glutamine amidotransferase superfamily signature 124 135 6.0E-8 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 SUPERFAMILY SSF52317 49 272 1.3E-56 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Gene3D G3DSA:3.40.50.620 243 441 3.7E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 50 566 55.986 T 06-07-2017 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00097 Anthranilate synthase component II signature 124 135 1.5E-6 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00097 Anthranilate synthase component II signature 212 225 1.5E-6 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00097 Anthranilate synthase component II signature 97 106 1.5E-6 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 SUPERFAMILY SSF54810 446 566 1.31E-54 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 SUPERFAMILY SSF52402 229 487 3.97E-56 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Gene3D G3DSA:3.30.300.10 442 566 4.0E-55 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 53 240 3.1E-82 T 06-07-2017 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Pfam PF00958 GMP synthase C terminal domain 474 565 1.7E-46 T 06-07-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 Pfam PF00117 Glutamine amidotransferase class-I 55 235 7.5E-42 T 06-07-2017 IPR017926 Glutamine amidotransferase APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 94 108 1.5E-5 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 53 67 1.5E-5 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 124 140 1.5E-5 T 06-07-2017 APT55_RS00290 8c4780eaa2cdccad85ac31a3df0c5bab 566 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 248 566 1.4E-152 T 06-07-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT55_RS26965 3babd2d5a62a00d0d161ee0cdc30a55d 239 Pfam PF00588 SpoU rRNA Methylase family 7 154 1.6E-37 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT55_RS26965 3babd2d5a62a00d0d161ee0cdc30a55d 239 PIRSF PIRSF004808 3 237 4.3E-75 T 06-07-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 APT55_RS26965 3babd2d5a62a00d0d161ee0cdc30a55d 239 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 5 232 4.4E-71 T 06-07-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 APT55_RS26965 3babd2d5a62a00d0d161ee0cdc30a55d 239 Gene3D G3DSA:3.40.1280.10 5 158 1.7E-33 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS26965 3babd2d5a62a00d0d161ee0cdc30a55d 239 SUPERFAMILY SSF75217 6 159 2.55E-35 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 Gene3D G3DSA:3.30.565.10 284 436 3.7E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 389 5.9E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 433 5.9E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 375 5.9E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 5.9E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 SUPERFAMILY SSF55874 268 434 1.31E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 435 2.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 Gene3D G3DSA:1.10.287.130 203 274 1.0E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 212 276 6.6E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 SMART SM00388 211 278 1.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 SMART SM00387 324 436 3.8E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14180 8958d3e1766dd26072aab6279e7e4256 438 SUPERFAMILY SSF47384 201 275 8.24E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS25475 041a15011154586bbc86037ea80217f3 84 Pfam PF14107 Domain of unknown function (DUF4280) 1 78 6.3E-15 T 06-07-2017 IPR025460 Protein of unknown function DUF4280 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 SUPERFAMILY SSF55973 4 110 1.61E-44 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 410 1.3E-164 T 06-07-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Gene3D G3DSA:3.30.300.10 12 146 5.5E-43 T 06-07-2017 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 280 288 - T 06-07-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 102 1.6E-40 T 06-07-2017 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Gene3D G3DSA:3.30.300.10 265 411 9.7E-65 T 06-07-2017 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 SUPERFAMILY SSF55973 254 409 7.85E-65 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 254 400 2.5E-65 T 06-07-2017 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 PIRSF PIRSF000497 1 412 6.2E-165 T 06-07-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Gene3D G3DSA:3.30.300.10 147 254 3.1E-39 T 06-07-2017 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 SUPERFAMILY SSF55973 122 253 9.42E-44 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 127 137 - T 06-07-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Pfam PF02772 S-adenosylmethionine synthetase, central domain 126 252 9.3E-44 T 06-07-2017 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21335 bd98ed881465b79f8a96886638cc02ce 418 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 411 56.756 T 06-07-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Gene3D G3DSA:2.60.200.20 22 111 2.4E-12 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SMART SM00382 266 457 4.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 ProSitePatterns PS00211 ABC transporters family signature. 373 387 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SUPERFAMILY SSF49879 18 123 1.45E-14 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SUPERFAMILY SSF52540 249 462 8.7E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Pfam PF12698 ABC-2 family transporter protein 590 798 3.8E-16 T 06-07-2017 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SUPERFAMILY SSF49879 138 236 3.63E-23 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Pfam PF00005 ABC transporter 257 401 3.3E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SMART SM00240 146 200 4.3E-12 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 SMART SM00240 35 93 4.3E-6 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Pfam PF00498 FHA domain 36 110 3.9E-10 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Pfam PF00498 FHA domain 149 215 1.8E-15 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Gene3D G3DSA:2.60.200.20 141 223 2.5E-20 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21120 a6e317826eb06d819fcbbc9e467bc391 811 Gene3D G3DSA:3.40.50.300 241 461 5.1E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 Gene3D G3DSA:3.30.70.580 8 112 8.4E-36 T 06-07-2017 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 SUPERFAMILY SSF55120 8 264 4.03E-82 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 9 252 32.389 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 Gene3D G3DSA:3.30.70.660 114 254 2.5E-34 T 06-07-2017 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 PIRSF PIRSF001430 8 259 4.8E-74 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 Pfam PF01416 tRNA pseudouridine synthase 155 253 1.1E-15 T 06-07-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 Pfam PF01416 tRNA pseudouridine synthase 15 111 6.5E-11 T 06-07-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS09175 a4441d7e11b18bf21a9d613f7f3aa544 280 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 10 247 2.3E-68 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF08447 PAS fold 295 375 7.9E-11 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:1.10.287.130 405 464 4.6E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF55874 468 638 3.8E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00448 658 773 1.4E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00388 413 479 2.4E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF08448 PAS fold 36 130 2.5E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF08448 PAS fold 149 253 2.5E-9 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF47384 398 480 2.94E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF55785 37 136 6.77E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF55785 125 249 8.7E-27 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:3.30.450.20 36 126 7.8E-18 T 06-07-2017 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF00072 Response regulator receiver domain 660 773 1.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:3.40.50.2300 655 779 3.5E-31 T 06-07-2017 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00091 23 89 0.05 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00091 263 340 9.7 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00091 140 207 4.1E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 525 636 3.3E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00086 210 251 5.1 T 06-07-2017 IPR001610 PAC motif APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00086 346 386 6.0 T 06-07-2017 IPR001610 PAC motif APT55_RS30965 39b961385a043a25bf08b62440b31562 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 576 8.9E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 622 635 8.9E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 580 590 8.9E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 615 8.9E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:3.30.565.10 465 638 3.0E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:3.30.450.20 127 244 1.0E-27 T 06-07-2017 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 478 2.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 135 7.4E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 258 1.8E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 Gene3D G3DSA:3.30.450.20 245 402 2.4E-23 T 06-07-2017 APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF52172 657 778 3.13E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SMART SM00387 525 638 1.3E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30965 39b961385a043a25bf08b62440b31562 780 SUPERFAMILY SSF55785 248 384 4.19E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 Gene3D G3DSA:1.20.58.100 409 517 1.4E-36 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 Gene3D G3DSA:3.50.50.60 1 271 1.1E-67 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 Gene3D G3DSA:3.50.50.60 350 408 1.1E-67 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 364 371 1.1E-7 T 06-07-2017 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-7 T 06-07-2017 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 523 538 1.1E-7 T 06-07-2017 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 Pfam PF02910 Fumarate reductase flavoprotein C-term 437 543 1.3E-9 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 Pfam PF00890 FAD binding domain 4 373 2.6E-31 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 SUPERFAMILY SSF46977 419 546 7.46E-36 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 SUPERFAMILY SSF51905 350 407 9.01E-63 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 SUPERFAMILY SSF51905 2 237 9.01E-63 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.6E-12 T 06-07-2017 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 349 371 1.6E-12 T 06-07-2017 APT55_RS25440 1b8cf4b12158fba9f898d92a31ba51d6 562 PIRSF PIRSF000171 1 553 1.0E-213 T 06-07-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 Hamap MF_00109 Shikimate kinase [aroK]. 4 169 27.236 T 06-07-2017 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 Pfam PF01202 Shikimate kinase 13 168 2.8E-51 T 06-07-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 Gene3D G3DSA:3.40.50.300 3 170 3.2E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 SUPERFAMILY SSF52540 7 170 9.0E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 PRINTS PR01100 Shikimate kinase family signature 77 86 3.4E-27 T 06-07-2017 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 PRINTS PR01100 Shikimate kinase family signature 59 67 3.4E-27 T 06-07-2017 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 PRINTS PR01100 Shikimate kinase family signature 97 114 3.4E-27 T 06-07-2017 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 PRINTS PR01100 Shikimate kinase family signature 31 44 3.4E-27 T 06-07-2017 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 PRINTS PR01100 Shikimate kinase family signature 7 22 3.4E-27 T 06-07-2017 APT55_RS04020 14667a2254bddfd45fd78145af27b23a 196 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 06-07-2017 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SMART SM00823 Phosphopantetheine attachment site 1489 1559 6.0E-4 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF51735 949 1182 6.19E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF53901 413 434 5.5E-84 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF53901 8 125 5.5E-84 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF53901 155 381 5.5E-84 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF00698 Acyl transferase domain 533 809 4.0E-50 T 06-07-2017 IPR014043 Acyl transferase APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 388 501 3.2E-21 T 06-07-2017 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:3.40.47.10 273 438 4.4E-61 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:3.40.50.720 1197 1435 1.3E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:1.10.1200.10 1477 1561 3.1E-27 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1513 1528 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF08659 KR domain 1198 1396 5.8E-49 T 06-07-2017 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 534 831 1.4E-116 T 06-07-2017 IPR020801 Polyketide synthase, acyl transferase domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:3.40.47.10 11 271 1.2E-77 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF55048 661 721 2.22E-7 T 06-07-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF51735 1196 1394 1.75E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF00550 Phosphopantetheine attachment site 1491 1554 2.7E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 267 385 7.7E-43 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1198 1397 1.5E-55 T 06-07-2017 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 259 4.7E-73 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SMART SM00825 Beta-ketoacyl synthase 11 438 1.5E-187 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF47336 1481 1555 4.58E-19 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:3.40.366.10 721 831 2.2E-86 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 Gene3D G3DSA:3.40.366.10 522 657 2.2E-86 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF52151 531 663 2.28E-72 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS30740 24a0b6a7da77407074cc5741d2111dd2 1595 SUPERFAMILY SSF52151 723 820 2.28E-72 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS08215 f4d05e9d8d3800a8337a55a214cf457c 460 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 123 271 1.0E-41 T 06-07-2017 IPR004474 Cell envelope-related transcriptional attenuator domain APT55_RS08215 f4d05e9d8d3800a8337a55a214cf457c 460 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 124 271 4.5E-41 T 06-07-2017 IPR004474 Cell envelope-related transcriptional attenuator domain APT55_RS08215 f4d05e9d8d3800a8337a55a214cf457c 460 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 365 451 5.7E-12 T 06-07-2017 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 SUPERFAMILY SSF56112 5 285 5.33E-69 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 SMART SM00220 14 290 1.4E-51 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 Pfam PF00069 Protein kinase domain 14 284 5.8E-44 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 20 44 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 143 155 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 Gene3D G3DSA:3.30.200.20 5 83 4.6E-19 T 06-07-2017 APT55_RS21730 05aa3b79b444e9c6b4164872ec2a5808 517 Gene3D G3DSA:1.10.510.10 84 294 1.1E-43 T 06-07-2017 APT55_RS13725 b672cce0a09c5b55a75ae94a952b353d 110 SUPERFAMILY SSF46785 14 70 1.85E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13725 b672cce0a09c5b55a75ae94a952b353d 110 Gene3D G3DSA:1.10.10.10 13 71 2.2E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SMART SM00388 421 487 9.0E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 602 5.2E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 645 5.2E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 588 5.2E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 608 626 5.2E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Gene3D G3DSA:1.10.287.130 417 483 1.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Pfam PF02743 Cache domain 35 294 5.3E-19 T 06-07-2017 IPR033479 Double Cache domain 1 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Gene3D G3DSA:3.30.450.20 174 304 1.4E-12 T 06-07-2017 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Gene3D G3DSA:3.30.565.10 496 646 8.2E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SUPERFAMILY SSF55874 476 646 7.47E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Pfam PF00072 Response regulator receiver domain 674 783 4.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Pfam PF00512 His Kinase A (phospho-acceptor) domain 421 486 1.9E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SUPERFAMILY SSF52172 670 797 6.4E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SMART SM00448 672 785 3.4E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Gene3D G3DSA:3.40.50.2300 670 793 9.5E-32 T 06-07-2017 APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 535 647 7.4E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SMART SM00387 534 648 4.2E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06925 20daecc1682d87f0a516aac7f14b13df 886 SUPERFAMILY SSF47384 407 488 5.3E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 SMART SM00487 22 219 4.7E-62 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 Gene3D G3DSA:3.40.50.300 209 374 6.2E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 Gene3D G3DSA:3.40.50.300 4 208 1.4E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 150 158 - T 06-07-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 Pfam PF00271 Helicase conserved C-terminal domain 231 337 9.4E-27 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 Pfam PF00270 DEAD/DEAH box helicase 27 192 6.2E-51 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 SMART SM00490 256 337 7.6E-31 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS23745 c7c4006d2ac118853f3707f326d0ec20 482 SUPERFAMILY SSF52540 72 358 1.59E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 ProSitePatterns PS00788 Chorismate synthase signature 2. 123 139 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 Hamap MF_00300 Chorismate synthase [aroC]. 9 359 37.141 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 Pfam PF01264 Chorismate synthase 9 352 9.6E-146 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 ProSitePatterns PS00789 Chorismate synthase signature 3. 326 342 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 TIGRFAM TIGR00033 aroC: chorismate synthase 9 356 1.7E-141 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 Gene3D G3DSA:3.60.150.10 8 358 3.1E-165 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 ProSitePatterns PS00787 Chorismate synthase signature 1. 15 30 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 PIRSF PIRSF001456 2 358 6.2E-156 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS02095 b708a447299b552d29c60e9fa734a07a 359 SUPERFAMILY SSF103263 5 358 3.66E-145 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Gene3D G3DSA:3.30.300.20 224 308 3.6E-31 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Gene3D G3DSA:3.30.300.20 310 378 1.4E-29 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 11 373 3.4E-100 T 06-07-2017 IPR010213 Transcription termination factor NusA GO:0003723 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SUPERFAMILY SSF50249 150 223 8.57E-8 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Pfam PF13184 NusA-like KH domain 262 328 1.6E-28 T 06-07-2017 IPR025249 KH domain, NusA-like GO:0003723 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SUPERFAMILY SSF69705 8 144 3.14E-31 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 6 432 27.221 T 06-07-2017 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Gene3D G3DSA:3.30.1480.10 9 142 8.9E-30 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SUPERFAMILY SSF54814 227 308 1.24E-23 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SMART SM00322 333 390 0.0024 T 06-07-2017 IPR004087 K Homology domain GO:0003676 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SMART SM00322 261 324 2.5 T 06-07-2017 IPR004087 K Homology domain GO:0003676 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Gene3D G3DSA:2.40.50.140 153 222 6.3E-15 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 Pfam PF08529 NusA N-terminal domain 9 142 3.8E-32 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 APT55_RS17425 2d550011c24aa3d05b25c0e8afdfe50f 439 SUPERFAMILY SSF54814 310 372 6.54E-16 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 Pfam PF00361 Proton-conducting membrane transporter 134 418 1.3E-62 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 9 496 3.6E-169 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 Hamap MF_00491 NAD(P)H-quinone oxidoreductase chain 4 [ndhD]. 3 502 40.703 T 06-07-2017 IPR022997 NADH-quinone oxidoreductase chain 4 GO:0016655|GO:0055114 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 4.1E-35 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 4.1E-35 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 4.1E-35 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 4.1E-35 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00875 ce78e3832c8392cf31cbad36a6fb2084 534 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 240 264 4.1E-35 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS01090 1a28d5267d8cc7c062ea388f9513b9d9 127 Gene3D G3DSA:2.40.50.140 4 103 2.2E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01090 1a28d5267d8cc7c062ea388f9513b9d9 127 SUPERFAMILY SSF50249 5 109 5.48E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01090 1a28d5267d8cc7c062ea388f9513b9d9 127 Pfam PF00436 Single-strand binding protein family 6 92 3.5E-6 T 06-07-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 309 74.471 T 06-07-2017 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 308 2.0E-124 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 2.6E-27 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 2.6E-27 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 225 235 2.6E-27 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 287 298 2.6E-27 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 2.6E-27 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 Gene3D G3DSA:3.40.50.1370 144 295 1.2E-60 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 SUPERFAMILY SSF53671 3 309 2.49E-103 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 4.2E-27 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 4.2E-27 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 4.2E-27 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 273 296 4.2E-27 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 5.2E-45 T 06-07-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 154 306 2.9E-55 T 06-07-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 APT55_RS08175 77ba6929ff6476cf8f5ac75f3de9904e 311 Gene3D G3DSA:3.40.50.1370 3 143 6.8E-49 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 SUPERFAMILY SSF55781 92 243 5.45E-25 T 06-07-2017 IPR029016 GAF domain-like APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 SMART SM00044 223 440 1.8E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 277 451 9.8E-39 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 SUPERFAMILY SSF55073 277 457 2.35E-58 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 Gene3D G3DSA:3.30.70.1230 278 456 3.8E-49 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 Gene3D G3DSA:3.30.450.40 85 241 1.0E-23 T 06-07-2017 IPR029016 GAF domain-like APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 SMART SM00065 111 245 7.0E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS22395 b2ed554b11ab05843c66de96ccee74d2 458 Pfam PF13185 GAF domain 110 236 1.8E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30125 71af8a06fa1cefe52c8793f4ab7a38f1 131 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 127 10.044 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS30125 71af8a06fa1cefe52c8793f4ab7a38f1 131 SUPERFAMILY SSF88723 2 129 7.29E-32 T 06-07-2017 IPR029060 PIN domain-like APT55_RS30125 71af8a06fa1cefe52c8793f4ab7a38f1 131 Gene3D G3DSA:3.40.50.1010 2 128 6.3E-31 T 06-07-2017 IPR029060 PIN domain-like APT55_RS30125 71af8a06fa1cefe52c8793f4ab7a38f1 131 Pfam PF01850 PIN domain 2 121 7.4E-15 T 06-07-2017 IPR002716 PIN domain APT55_RS15780 87600f32f954c2a6898e601cb979ed7e 188 SUPERFAMILY SSF88723 9 118 1.11E-6 T 06-07-2017 IPR029060 PIN domain-like APT55_RS15780 87600f32f954c2a6898e601cb979ed7e 188 Pfam PF13470 PIN domain 6 113 1.5E-12 T 06-07-2017 IPR002716 PIN domain APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 ProSitePatterns PS00892 HIT domain signature. 89 107 - T 06-07-2017 IPR019808 Histidine triad, conserved site APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 Gene3D G3DSA:3.30.428.10 3 116 7.9E-44 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 PRINTS PR00332 Histidine triad family signature 96 106 6.9E-22 T 06-07-2017 IPR001310 Histidine triad (HIT) protein APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 PRINTS PR00332 Histidine triad family signature 29 47 6.9E-22 T 06-07-2017 IPR001310 Histidine triad (HIT) protein APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 PRINTS PR00332 Histidine triad family signature 8 24 6.9E-22 T 06-07-2017 IPR001310 Histidine triad (HIT) protein APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 SUPERFAMILY SSF54197 4 115 4.64E-39 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS11410 768db3b3933fbaef645c738ece894c70 116 Pfam PF01230 HIT domain 14 110 3.2E-30 T 06-07-2017 IPR001310 Histidine triad (HIT) protein APT55_RS26475 5fda02ce48700c61cae8d488985a892b 153 Pfam PF01475 Ferric uptake regulator family 18 140 3.0E-43 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT55_RS26475 5fda02ce48700c61cae8d488985a892b 153 SUPERFAMILY SSF46785 12 144 1.01E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26475 5fda02ce48700c61cae8d488985a892b 153 Gene3D G3DSA:1.10.10.10 11 92 3.5E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 4 495 9.7E-210 T 06-07-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 8 494 44.018 T 06-07-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PIRSF PIRSF039101 2 506 1.1E-201 T 06-07-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 Gene3D G3DSA:2.40.50.140 4 144 5.1E-45 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 Gene3D G3DSA:3.30.930.10 147 489 3.1E-120 T 06-07-2017 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 252 269 4.5E-39 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 189 199 4.5E-39 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 234 247 4.5E-39 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 205 221 4.5E-39 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 376 392 4.5E-39 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 SUPERFAMILY SSF50249 3 145 4.19E-38 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 Pfam PF00152 tRNA synthetases class II (D, K and N) 154 491 7.1E-82 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 Pfam PF01336 OB-fold nucleic acid binding domain 54 136 3.3E-16 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT55_RS26680 464ed2813381682380d0bc4a5b6b664c 506 SUPERFAMILY SSF55681 153 492 2.3E-118 T 06-07-2017 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SMART SM00065 1339 1488 1.3E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SUPERFAMILY SSF52540 295 589 1.54E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1523 1619 6.8E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:3.30.450.40 1319 1492 1.1E-31 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:3.30.565.10 1619 1786 8.9E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SUPERFAMILY SSF55874 1607 1785 2.23E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SMART SM00220 7 267 9.2E-23 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:3.30.200.20 6 84 5.5E-4 T 06-07-2017 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SMART SM00387 1665 1787 6.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1746 1764 4.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1715 1729 4.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1733 1743 4.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1771 1784 4.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SUPERFAMILY SSF56112 4 274 4.99E-53 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 SUPERFAMILY SSF55781 1324 1496 1.77E-27 T 06-07-2017 IPR029016 GAF domain-like APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 124 136 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Pfam PF13492 GAF domain 1340 1480 5.8E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1669 1784 1.4E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Pfam PF00069 Protein kinase domain 8 255 6.7E-32 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:3.40.50.300 296 487 2.3E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:1.10.510.10 90 265 9.0E-38 T 06-07-2017 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:1.25.40.10 727 856 1.4E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Gene3D G3DSA:1.25.40.10 1197 1233 1.4E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30915 edc31b2da9689b97b06c31a048e6c85f 1787 Pfam PF13191 AAA ATPase domain 298 487 1.2E-47 T 06-07-2017 APT55_RS18025 25dd43160d18557521cad3ed193248c3 305 SUPERFAMILY SSF56300 50 294 1.05E-54 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS18025 25dd43160d18557521cad3ed193248c3 305 Pfam PF00149 Calcineurin-like phosphoesterase 50 231 1.5E-18 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS18025 25dd43160d18557521cad3ed193248c3 305 Gene3D G3DSA:3.60.21.10 50 300 2.1E-64 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SUPERFAMILY SSF48452 577 779 1.03E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SMART SM00028 700 733 15.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SMART SM00028 577 610 19.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SMART SM00028 522 555 34.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SMART SM00028 660 693 0.048 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SMART SM00028 740 773 0.69 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Pfam PF13181 Tetratricopeptide repeat 523 547 0.14 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Pfam PF13181 Tetratricopeptide repeat 740 769 0.008 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Pfam PF13424 Tetratricopeptide repeat 666 731 8.4E-8 T 06-07-2017 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SUPERFAMILY SSF52540 106 331 2.44E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Gene3D G3DSA:1.25.40.10 632 678 1.3E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Gene3D G3DSA:1.25.40.10 489 631 1.9E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Pfam PF00931 NB-ARC domain 122 214 2.4E-6 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Gene3D G3DSA:3.40.50.300 104 251 4.0E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 Gene3D G3DSA:1.25.40.10 679 777 4.2E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05135 006399f21a82b9cf71838e0f24c319db 791 SUPERFAMILY SSF48452 418 573 4.09E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 Pfam PF17148 Domain of unknown function (DUF5117) 98 289 3.7E-33 T 06-07-2017 IPR033413 Domain of unknown function DUF5117 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 SUPERFAMILY SSF55486 228 391 2.11E-28 T 06-07-2017 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 SUPERFAMILY SSF55486 501 581 2.11E-28 T 06-07-2017 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 Pfam PF17162 Domain of unknown function (DUF5118) 37 84 1.0E-6 T 06-07-2017 IPR033428 Domain of unknown function DUF5118 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 Gene3D G3DSA:3.40.390.10 502 583 1.2E-19 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 Gene3D G3DSA:3.40.390.10 255 405 1.2E-19 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 APT55_RS17580 3bb369f697f0d1eea7623413ad891213 904 Pfam PF16313 Met-zincin 494 817 8.5E-91 T 06-07-2017 IPR032534 Domian of unknown function DUF4953 APT55_RS16695 54300f5b9361f92a2859b443409878cf 228 SMART SM00421 170 227 3.8E-6 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS16695 54300f5b9361f92a2859b443409878cf 228 SUPERFAMILY SSF46894 158 216 1.46E-13 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS16695 54300f5b9361f92a2859b443409878cf 228 Gene3D G3DSA:1.10.10.10 170 215 1.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16695 54300f5b9361f92a2859b443409878cf 228 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 214 2.5E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 Gene3D G3DSA:1.10.510.10 84 264 2.1E-34 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 Pfam PF00069 Protein kinase domain 14 219 5.0E-38 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 20 43 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 Gene3D G3DSA:3.30.200.20 9 83 1.5E-19 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 SUPERFAMILY SSF56112 11 273 2.4E-59 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 SMART SM00220 14 264 9.0E-35 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 PRINTS PR01217 Proline rich extensin signature 410 427 7.0E-9 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 PRINTS PR01217 Proline rich extensin signature 430 455 7.0E-9 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 PRINTS PR01217 Proline rich extensin signature 352 364 7.0E-9 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 PRINTS PR01217 Proline rich extensin signature 367 388 7.0E-9 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 PRINTS PR01217 Proline rich extensin signature 388 404 7.0E-9 T 06-07-2017 APT55_RS25405 300dc3a4f4eb9dc899bb0f87b99e50f3 482 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS12855 c799873dcc6aed86a8b81124a509c3c2 446 Pfam PF02386 Cation transport protein 37 421 4.6E-56 T 06-07-2017 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 APT55_RS12855 c799873dcc6aed86a8b81124a509c3c2 446 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 21 417 6.0E-106 T 06-07-2017 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 Gene3D G3DSA:1.10.10.10 1 84 1.4E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 SUPERFAMILY SSF46785 1 110 7.9E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 SUPERFAMILY SSF53850 89 297 1.88E-43 T 06-07-2017 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 Gene3D G3DSA:3.40.190.10 178 265 1.5E-20 T 06-07-2017 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 Gene3D G3DSA:3.40.190.10 91 177 5.2E-16 T 06-07-2017 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 Pfam PF03466 LysR substrate binding domain 88 293 2.0E-48 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS23735 f363bb79789a8f8e531b9e96ff6abacb 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.8E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 SUPERFAMILY SSF55729 10 276 1.67E-50 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 Pfam PF13530 Sterol carrier protein domain 172 378 8.0E-44 T 06-07-2017 IPR025559 Enhanced intracellular survival protein domain APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 SUPERFAMILY SSF55718 279 381 5.1E-22 T 06-07-2017 IPR003033 SCP2 sterol-binding domain APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 Gene3D G3DSA:3.40.630.30 12 124 2.5E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 Pfam PF13527 Acetyltransferase (GNAT) domain 12 127 2.6E-14 T 06-07-2017 APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 Gene3D G3DSA:3.30.1050.10 267 372 2.0E-24 T 06-07-2017 IPR003033 SCP2 sterol-binding domain APT55_RS11040 de3319f060985c9310e446adcbb8f836 381 Gene3D G3DSA:3.40.630.30 125 266 1.5E-36 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 SMART SM00382 766 952 2.8E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 SUPERFAMILY SSF52540 729 976 2.88E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Gene3D G3DSA:3.40.50.300 739 970 7.5E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Pfam PF00027 Cyclic nucleotide-binding domain 36 123 1.1E-6 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 SMART SM00100 17 135 1.5E-5 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 SUPERFAMILY SSF51206 9 131 5.76E-15 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Gene3D G3DSA:3.90.70.10 278 399 3.3E-8 T 06-07-2017 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Pfam PF00005 ABC transporter 757 906 1.7E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 ProSitePatterns PS00211 ABC transporters family signature. 878 892 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Pfam PF03412 Peptidase C39 family 275 400 2.2E-9 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 SUPERFAMILY SSF90123 411 722 1.11E-71 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Pfam PF00664 ABC transporter transmembrane region 424 693 2.2E-50 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 281 976 2.0E-225 T 06-07-2017 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Gene3D G3DSA:1.20.1560.10 411 724 3.3E-86 T 06-07-2017 APT55_RS29945 bb2931f48d7d440340b28cd4acdddca5 980 Gene3D G3DSA:2.60.120.10 9 130 3.2E-11 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Gene3D G3DSA:1.25.40.10 294 356 1.7E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Pfam PF13432 Tetratricopeptide repeat 142 203 9.5E-10 T 06-07-2017 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Pfam PF13432 Tetratricopeptide repeat 213 272 1.4E-6 T 06-07-2017 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Gene3D G3DSA:1.25.40.10 209 293 6.2E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SUPERFAMILY SSF48452 39 337 8.72E-55 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Gene3D G3DSA:1.25.40.10 31 208 9.9E-46 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 36 69 1.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 240 273 0.03 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 308 341 2.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 172 205 3.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 70 103 3.1E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 104 137 5.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 206 239 0.0061 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 138 171 2.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 SMART SM00028 274 307 2.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Pfam PF13414 TPR repeat 77 118 8.4E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00115 815f6c575be8ec39d8765bd6714ac7a8 360 Pfam PF13431 Tetratricopeptide repeat 297 340 6.6E-5 T 06-07-2017 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.1E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.1E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.1E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 Gene3D G3DSA:3.40.50.2300 3 127 2.1E-38 T 06-07-2017 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 Gene3D G3DSA:1.10.10.10 153 214 2.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 SMART SM00448 3 116 2.3E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 SUPERFAMILY SSF46894 146 214 4.76E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 Pfam PF00072 Response regulator receiver domain 5 116 7.7E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 SUPERFAMILY SSF52172 2 141 7.4E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 SMART SM00421 151 208 3.4E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18075 7bed15ff450525728bd3981090b1df1f 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 1.3E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18680 d6b761c75534df557d48031a038b0567 281 SMART SM00849 31 223 9.9E-6 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18680 d6b761c75534df557d48031a038b0567 281 Pfam PF12706 Beta-lactamase superfamily domain 43 246 2.0E-25 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18680 d6b761c75534df557d48031a038b0567 281 Gene3D G3DSA:3.60.15.10 9 280 3.0E-49 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18680 d6b761c75534df557d48031a038b0567 281 SUPERFAMILY SSF56281 9 280 3.82E-50 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS16965 b8ae282e02efb628a726492d966e58cf 403 SMART SM00448 282 395 1.0E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16965 b8ae282e02efb628a726492d966e58cf 403 Pfam PF00072 Response regulator receiver domain 284 394 4.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16965 b8ae282e02efb628a726492d966e58cf 403 Gene3D G3DSA:3.40.50.2300 281 399 1.5E-25 T 06-07-2017 APT55_RS16965 b8ae282e02efb628a726492d966e58cf 403 SUPERFAMILY SSF52172 284 399 3.56E-27 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 621 660 2.8E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 540 579 3.4E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 662 701 2.7E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 995 1033 0.02 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 913 952 3.3E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 784 823 2.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 703 742 1.3E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 825 864 4.3E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 1076 1115 1.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 581 619 9.8E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 744 782 0.0065 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 866 905 8.7E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 1035 1074 4.7E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SMART SM00320 954 993 4.8E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Gene3D G3DSA:3.40.50.300 32 185 1.5E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 606 620 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SUPERFAMILY SSF50978 539 823 1.04E-76 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Gene3D G3DSA:2.130.10.10 911 1133 2.8E-62 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 PRINTS PR00320 G protein beta WD-40 repeat signature 647 661 3.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 PRINTS PR00320 G protein beta WD-40 repeat signature 939 953 3.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 PRINTS PR00320 G protein beta WD-40 repeat signature 566 580 3.5E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SUPERFAMILY SSF50978 826 1116 1.71E-79 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 915 951 6.0E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 786 822 3.0E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 745 782 0.22 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 955 992 1.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 622 659 3.5E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 546 579 2.3E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 583 619 8.1E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 1077 1115 8.8E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 704 742 1.4E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 828 864 1.3E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 881 905 0.063 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 1037 1074 3.7E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF00400 WD domain, G-beta repeat 664 701 7.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 SUPERFAMILY SSF52540 24 255 2.02E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 688 702 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1102 1116 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 851 865 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Gene3D G3DSA:2.130.10.10 544 662 5.6E-40 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Gene3D G3DSA:2.130.10.10 663 910 5.7E-73 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS01295 d5794242bc603dfd4139341a3834585a 1151 Pfam PF14516 AAA-like domain 15 357 2.1E-31 T 06-07-2017 APT55_RS21505 a5d76c4bc9182eb110261161e078a59a 133 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 20 123 24.161 T 06-07-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APT55_RS21505 a5d76c4bc9182eb110261161e078a59a 133 SUPERFAMILY SSF81301 22 130 1.18E-36 T 06-07-2017 APT55_RS21505 a5d76c4bc9182eb110261161e078a59a 133 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 24 122 2.0E-31 T 06-07-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APT55_RS21505 a5d76c4bc9182eb110261161e078a59a 133 Pfam PF02410 Ribosomal silencing factor during starvation 27 122 4.2E-24 T 06-07-2017 APT55_RS21505 a5d76c4bc9182eb110261161e078a59a 133 Gene3D G3DSA:3.30.460.10 21 125 1.5E-33 T 06-07-2017 APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 Gene3D G3DSA:3.20.20.80 440 458 2.3E-11 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 Gene3D G3DSA:3.20.20.80 265 400 2.3E-11 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 SUPERFAMILY SSF51445 226 564 4.7E-44 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 Pfam PF02638 Glycosyl hydrolase-like 10 226 530 6.2E-85 T 06-07-2017 IPR003790 Glycosyl hydrolase-like 10 APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 Pfam PF00395 S-layer homology domain 90 131 1.4E-9 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS07850 b2584c76124ea28a74d7f7eb1b7f9451 589 Pfam PF00395 S-layer homology domain 27 69 3.4E-18 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 SMART SM00382 374 546 1.3E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 Pfam PF00664 ABC transporter transmembrane region 34 302 3.4E-45 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 Pfam PF00005 ABC transporter 365 514 5.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 Gene3D G3DSA:3.40.50.300 349 578 6.7E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 Gene3D G3DSA:1.20.1560.10 19 337 1.7E-79 T 06-07-2017 APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 SUPERFAMILY SSF52540 338 584 4.49E-92 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07120 9b3c88bd0bb9cd84a185b6d587426467 595 SUPERFAMILY SSF90123 19 335 9.55E-80 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 Gene3D G3DSA:3.30.450.90 206 332 2.6E-46 T 06-07-2017 APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 Pfam PF00437 Type II/IV secretion system protein 232 499 4.1E-75 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 SMART SM00382 360 484 0.0069 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 SUPERFAMILY SSF52540 220 622 2.32E-93 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 62 178 5.0E-17 T 06-07-2017 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 Gene3D G3DSA:3.40.50.300 336 622 2.1E-97 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12505 42ea0ec982b578c6b44edb589da588cc 666 SUPERFAMILY SSF160246 16 171 6.8E-13 T 06-07-2017 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 SUPERFAMILY SSF64005 15 241 1.44E-87 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 Pfam PF01255 Putative undecaprenyl diphosphate synthase 25 245 2.5E-84 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 Gene3D G3DSA:3.40.1180.10 11 247 4.5E-102 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 18 246 38.912 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 18 245 3.3E-91 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS05125 43db1d27f17580f33f9da8d27492b5ef 261 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 191 208 - T 06-07-2017 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 SMART SM00448 2 115 1.1E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 SUPERFAMILY SSF46894 130 230 9.92E-28 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 1.2E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 Pfam PF00072 Response regulator receiver domain 4 115 1.7E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 SMART SM00862 153 229 2.1E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 Gene3D G3DSA:3.40.50.2300 1 127 1.8E-42 T 06-07-2017 APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 Gene3D G3DSA:1.10.10.10 130 230 2.4E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00080 21b9677ed12278ed70eff8af4188933f 245 SUPERFAMILY SSF52172 1 131 1.35E-43 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 Pfam PF00085 Thioredoxin 8 101 5.5E-28 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 1.5E-30 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 SUPERFAMILY SSF52833 8 105 4.5E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 PRINTS PR00421 Thioredoxin family signature 69 80 2.3E-7 T 06-07-2017 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 PRINTS PR00421 Thioredoxin family signature 21 29 2.3E-7 T 06-07-2017 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 PRINTS PR00421 Thioredoxin family signature 29 38 2.3E-7 T 06-07-2017 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 PIRSF PIRSF000077 1 105 3.6E-32 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS25345 4c08e6193cb81d15b90894e05f7ab94a 105 Gene3D G3DSA:3.40.30.10 8 103 1.4E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 392 439 2.0E-11 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 206 252 1.4E-13 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 538 584 7.0E-14 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 344 390 1.5E-12 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 254 299 4.5E-14 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 492 536 1.5E-15 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 302 342 6.0E-6 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 TIGRFAM TIGR04534 ELWxxDGT_rpt: ELWxxDGT repeat 441 478 3.1E-13 T 06-07-2017 IPR030916 ELWxxDGT repeat APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 SUPERFAMILY SSF51120 1465 1606 5.23E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Gene3D G3DSA:2.150.10.10 1467 1586 1.3E-11 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Gene3D G3DSA:2.150.10.10 1225 1368 1.7E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Gene3D G3DSA:2.150.10.10 1382 1463 8.5E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1404 1421 0.0028 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1162 1174 2.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1323 1340 0.14 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1512 1528 0.015 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1423 1438 0.62 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1141 1152 46.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1306 1322 0.072 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1493 1510 21.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 SUPERFAMILY SSF51120 1219 1369 6.41E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 Pfam PF14252 Domain of unknown function (DUF4347) 21 182 6.3E-55 T 06-07-2017 IPR025592 Domain of unknown function DUF4347 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 SUPERFAMILY SSF51120 1383 1481 8.5E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1419 1437 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 SUPERFAMILY SSF63829 391 637 5.95E-8 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 PRINTS PR00313 NodO calcium binding signature 1164 1175 4.9E-10 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 PRINTS PR00313 NodO calcium binding signature 1414 1422 4.9E-10 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 PRINTS PR00313 NodO calcium binding signature 1432 1441 4.9E-10 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 PRINTS PR00313 NodO calcium binding signature 1315 1323 4.9E-10 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 SUPERFAMILY SSF63825 204 422 1.7E-13 T 06-07-2017 APT55_RS12235 9d1dd5fb687fcf174224cea67747757b 1625 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1508 1526 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Gene3D G3DSA:3.40.50.920 493 619 2.6E-40 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Pfam PF02780 Transketolase, C-terminal domain 492 612 1.7E-36 T 06-07-2017 IPR033248 Transketolase, C-terminal domain APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 622 44.402 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 3 621 1.7E-291 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Gene3D G3DSA:3.40.50.970 233 293 1.5E-55 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Gene3D G3DSA:3.40.50.970 7 188 1.5E-55 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 3 276 4.4E-107 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 SUPERFAMILY SSF52518 2 345 3.16E-74 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Pfam PF02779 Transketolase, pyrimidine binding domain 313 475 6.3E-43 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 SUPERFAMILY SSF52518 285 475 1.23E-65 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 SUPERFAMILY SSF52922 489 620 1.44E-37 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 ProSitePatterns PS00802 Transketolase signature 2. 420 436 - T 06-07-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 SMART SM00861 314 479 1.6E-72 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 ProSitePatterns PS00801 Transketolase signature 1. 28 47 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS07760 28da617805dadc4f9809288ca389b2db 630 Gene3D G3DSA:3.40.50.970 294 492 3.3E-77 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 Gene3D G3DSA:2.70.50.60 267 392 1.8E-10 T 06-07-2017 APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 SMART SM00382 64 235 1.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 SUPERFAMILY SSF52540 48 245 6.95E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 Pfam PF14524 Wzt C-terminal domain 268 394 4.5E-17 T 06-07-2017 IPR029439 Wzt, C-terminal APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 Gene3D G3DSA:3.40.50.300 43 248 1.3E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24410 cb948097bf210283812e6b1f03d2e471 418 Pfam PF00005 ABC transporter 55 186 4.9E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS09050 0418291537b676aa3b29d615994374cc 221 SUPERFAMILY SSF46785 3 69 1.18E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09050 0418291537b676aa3b29d615994374cc 221 Pfam PF01726 LexA DNA binding domain 1 65 1.2E-13 T 06-07-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APT55_RS09050 0418291537b676aa3b29d615994374cc 221 SUPERFAMILY SSF51306 88 213 3.66E-22 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C APT55_RS09050 0418291537b676aa3b29d615994374cc 221 Gene3D G3DSA:2.10.109.10 88 215 3.7E-26 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS09050 0418291537b676aa3b29d615994374cc 221 Gene3D G3DSA:1.10.10.10 1 68 2.5E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09050 0418291537b676aa3b29d615994374cc 221 TIGRFAM TIGR00498 lexA: repressor LexA 1 214 4.8E-41 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT55_RS09050 0418291537b676aa3b29d615994374cc 221 Pfam PF00717 Peptidase S24-like 129 196 3.0E-8 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 Hamap MF_01335 Cytochrome b6-f complex iron-sulfur subunit [petC]. 2 178 42.975 T 06-07-2017 IPR023960 Cytochrome b6-f complex iron-sulfur subunit GO:0009496|GO:0015979|GO:0016020|GO:0045158|GO:0055114 KEGG: 00195+1.10.9.1|MetaCyc: PWY-101 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 Pfam PF00355 Rieske [2Fe-2S] domain 87 147 1.7E-13 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 SUPERFAMILY SSF50022 10 177 3.32E-37 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 102 113 4.8E-15 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 135 147 4.8E-15 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 123 135 4.8E-15 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 Gene3D G3DSA:2.102.10.10 11 177 2.6E-40 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS27625 6c4142c0a2e744db29ccdece62905bb0 178 Pfam PF08802 Cytochrome B6-F complex Fe-S subunit 9 46 5.6E-18 T 06-07-2017 IPR014909 Cytochrome b6-f complex Fe-S subunit GO:0009496|GO:0042651|GO:0051537|GO:0055114 KEGG: 00195+1.10.9.1|MetaCyc: PWY-101 APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 SUPERFAMILY SSF47616 72 196 1.39E-26 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 Gene3D G3DSA:1.20.1050.10 81 196 1.8E-25 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 186 1.2E-8 T 06-07-2017 APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 Gene3D G3DSA:3.40.30.10 1 80 3.3E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 2.9E-17 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS25170 74ab93aad6c280230028b51761cb8c36 199 SUPERFAMILY SSF52833 1 84 2.66E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS09695 53e51f4a8a419720d9a36a1c28195f6c 417 Pfam PF12704 MacB-like periplasmic core domain 20 265 2.0E-7 T 06-07-2017 IPR025857 MacB-like periplasmic core domain APT55_RS09695 53e51f4a8a419720d9a36a1c28195f6c 417 Pfam PF02687 FtsX-like permease family 301 411 1.0E-12 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 SUPERFAMILY SSF53807 5 511 8.18E-177 T 06-07-2017 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 Pfam PF11844 Domain of unknown function (DUF3364) 4 56 1.9E-25 T 06-07-2017 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 Gene3D G3DSA:3.40.50.1980 70 213 3.3E-53 T 06-07-2017 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 Gene3D G3DSA:3.40.50.1980 214 314 2.2E-40 T 06-07-2017 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 490 2.0E-124 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 5 512 1.0E-267 T 06-07-2017 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS11605 b47de4b95f90c5b293fb01d333885467 512 Gene3D G3DSA:3.40.50.1980 341 466 1.3E-53 T 06-07-2017 APT55_RS17100 b6e5d170a31a4de60a1cb4ae71036bb4 230 Gene3D G3DSA:3.40.30.10 73 229 4.8E-46 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17100 b6e5d170a31a4de60a1cb4ae71036bb4 230 Pfam PF13462 Thioredoxin 78 227 2.9E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17100 b6e5d170a31a4de60a1cb4ae71036bb4 230 SUPERFAMILY SSF52833 74 227 1.36E-43 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 Gene3D G3DSA:3.40.50.1000 1 214 4.6E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 94 193 1.6E-13 T 06-07-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 95 191 1.9E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 SUPERFAMILY SSF56784 1 219 2.49E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 8.7E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 8.7E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 8.7E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 8.7E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 191 9.3E-35 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02745 d22b1a1bb0772a864043dfced75299f0 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 186 4.0E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS00105 c65a4ccb9df6949b4fa08a75b98121d1 175 Pfam PF13505 Outer membrane protein beta-barrel domain 17 175 1.9E-7 T 06-07-2017 IPR027385 Outer membrane protein beta-barrel APT55_RS00105 c65a4ccb9df6949b4fa08a75b98121d1 175 SUPERFAMILY SSF56925 35 155 9.42E-6 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 SUPERFAMILY SSF48452 28 129 2.43E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 Gene3D G3DSA:1.25.40.10 27 128 7.4E-27 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 Pfam PF00515 Tetratricopeptide repeat 57 90 4.4E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 SMART SM00028 26 56 43.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 SMART SM00028 57 90 1.1E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20060 a96a3e85256846e2127ed3d46ff180cb 142 SMART SM00028 91 124 0.0047 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Gene3D G3DSA:1.10.601.10 45 88 1.3E-55 T 06-07-2017 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Gene3D G3DSA:1.10.601.10 169 246 1.3E-55 T 06-07-2017 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Gene3D G3DSA:1.10.10.10 250 296 8.2E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 SUPERFAMILY SSF88946 54 247 2.04E-54 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Gene3D G3DSA:1.10.10.10 339 410 2.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Pfam PF04539 Sigma-70 region 3 256 330 2.5E-26 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 PRINTS PR00046 Major sigma-70 factor signature 385 396 1.0E-25 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 PRINTS PR00046 Major sigma-70 factor signature 225 233 1.0E-25 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 PRINTS PR00046 Major sigma-70 factor signature 348 360 1.0E-25 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 PRINTS PR00046 Major sigma-70 factor signature 201 214 1.0E-25 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 PRINTS PR00046 Major sigma-70 factor signature 370 385 1.0E-25 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 SUPERFAMILY SSF88659 250 323 1.31E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 SUPERFAMILY SSF88659 308 409 4.67E-25 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 175 398 1.1E-39 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family 56 397 1.2E-125 T 06-07-2017 IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 201 214 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 370 396 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Pfam PF00140 Sigma-70 factor, region 1.2 56 88 1.3E-9 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Pfam PF04542 Sigma-70 region 2 177 246 3.0E-22 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26480 615068cd000e7f6df4274ccf3b6ed936 413 Pfam PF04545 Sigma-70, region 4 344 398 6.4E-20 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Gene3D G3DSA:3.30.450.40 408 566 4.0E-29 T 06-07-2017 IPR029016 GAF domain-like APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SMART SM00283 657 918 3.4E-64 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 711 917 7.3E-40 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SUPERFAMILY SSF58104 611 919 1.23E-59 T 06-07-2017 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Pfam PF00672 HAMP domain 328 395 7.1E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Gene3D G3DSA:1.10.287.950 672 889 3.3E-43 T 06-07-2017 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Pfam PF01590 GAF domain 426 564 1.1E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SUPERFAMILY SSF103190 76 225 3.92E-6 T 06-07-2017 IPR029151 Periplasmic sensor domain-like APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SUPERFAMILY SSF158472 348 397 2.22E-7 T 06-07-2017 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SMART SM00065 423 574 1.2E-25 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SUPERFAMILY SSF55781 404 574 3.05E-49 T 06-07-2017 IPR029016 GAF domain-like APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SMART SM00304 347 399 8.0E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 SMART SM00304 591 642 7.6E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Gene3D G3DSA:3.30.450.20 124 217 9.4E-11 T 06-07-2017 APT55_RS25320 50776775b0e67c929218b68c61e7316c 920 Pfam PF02743 Cache domain 71 308 7.2E-22 T 06-07-2017 IPR033479 Double Cache domain 1 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Pfam PF00550 Phosphopantetheine attachment site 435 477 2.1E-6 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Pfam PF00501 AMP-binding enzyme 61 319 2.5E-38 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Gene3D G3DSA:2.30.38.10 258 313 3.5E-6 T 06-07-2017 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 SUPERFAMILY SSF56801 12 419 8.63E-64 T 06-07-2017 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 ProSitePatterns PS00455 Putative AMP-binding domain signature. 83 94 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Pfam PF01757 Acyltransferase family 509 788 8.2E-8 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Gene3D G3DSA:3.40.50.980 93 252 1.1E-27 T 06-07-2017 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 SUPERFAMILY SSF47336 435 478 8.9E-7 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Gene3D G3DSA:3.30.300.30 314 419 3.3E-10 T 06-07-2017 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Gene3D G3DSA:3.40.50.980 12 92 1.8E-8 T 06-07-2017 APT55_RS00800 eb1c4ee615564a0914dd5f72fdb88d6a 814 Gene3D G3DSA:1.10.1200.10 435 478 9.4E-7 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS16045 7266957fa577df9170f8fb16f9ab65dd 282 Gene3D G3DSA:1.10.3720.10 87 273 2.3E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16045 7266957fa577df9170f8fb16f9ab65dd 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 275 5.2E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16045 7266957fa577df9170f8fb16f9ab65dd 282 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 70 266 2.4E-72 T 06-07-2017 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT55_RS16045 7266957fa577df9170f8fb16f9ab65dd 282 SUPERFAMILY SSF161098 84 266 1.02E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS01880 d24d6a261687a5a6725f55b9449ea368 147 Gene3D G3DSA:1.10.10.10 1 133 2.2E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01880 d24d6a261687a5a6725f55b9449ea368 147 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 129 1.2E-35 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS01880 d24d6a261687a5a6725f55b9449ea368 147 Pfam PF02082 Transcriptional regulator 1 83 4.9E-25 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS01880 d24d6a261687a5a6725f55b9449ea368 147 SUPERFAMILY SSF46785 2 131 1.19E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29940 56d8f258fcdd29d935838dd86c0f5b41 281 SUPERFAMILY SSF54534 141 237 1.7E-20 T 06-07-2017 APT55_RS29940 56d8f258fcdd29d935838dd86c0f5b41 281 Gene3D G3DSA:3.10.50.40 161 257 9.1E-14 T 06-07-2017 APT55_RS29940 56d8f258fcdd29d935838dd86c0f5b41 281 Pfam PF00639 PPIC-type PPIASE domain 162 236 4.2E-9 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Pfam PF00575 S1 RNA binding domain 191 262 1.7E-16 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Pfam PF00575 S1 RNA binding domain 115 178 3.3E-10 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Pfam PF00575 S1 RNA binding domain 25 98 9.4E-5 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SMART SM00316 192 262 2.3E-22 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SMART SM00316 114 180 4.3E-10 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SMART SM00316 27 98 1.1E-9 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SUPERFAMILY SSF50249 21 123 5.77E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 PRINTS PR00681 Ribosomal protein S1 signature 29 47 8.3E-13 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 PRINTS PR00681 Ribosomal protein S1 signature 164 184 8.3E-13 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 PRINTS PR00681 Ribosomal protein S1 signature 119 135 8.3E-13 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 PRINTS PR00681 Ribosomal protein S1 signature 47 61 8.3E-13 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Gene3D G3DSA:2.40.50.140 183 262 2.2E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Gene3D G3DSA:2.40.50.140 106 180 5.1E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 Gene3D G3DSA:2.40.50.140 25 100 5.1E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SUPERFAMILY SSF50249 104 180 3.51E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01245 a1f0dd172018178c48798298ef68b08e 295 SUPERFAMILY SSF50249 185 268 5.07E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS11730 87d7caa2eeb630ff0769e4899d17eac9 361 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS11730 87d7caa2eeb630ff0769e4899d17eac9 361 SUPERFAMILY SSF52540 6 239 2.15E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11730 87d7caa2eeb630ff0769e4899d17eac9 361 Gene3D G3DSA:3.40.50.300 25 232 9.1E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11730 87d7caa2eeb630ff0769e4899d17eac9 361 Pfam PF00005 ABC transporter 25 160 1.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11730 87d7caa2eeb630ff0769e4899d17eac9 361 SMART SM00382 23 218 1.9E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 Pfam PF00155 Aminotransferase class I and II 36 405 1.6E-33 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 Hamap MF_01642 LL-diaminopimelate aminotransferase [dapL]. 3 408 54.882 T 06-07-2017 IPR019942 LL-diaminopimelate aminotransferase GO:0009089|GO:0010285 KEGG: 00300+2.6.1.83|MetaCyc: PWY-5097 APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 SUPERFAMILY SSF53383 3 405 1.13E-79 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 Gene3D G3DSA:3.40.640.10 50 263 3.2E-40 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 TIGRFAM TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase 3 407 6.8E-185 T 06-07-2017 IPR019942 LL-diaminopimelate aminotransferase GO:0009089|GO:0010285 KEGG: 00300+2.6.1.83|MetaCyc: PWY-5097 APT55_RS21610 5b7e2b54d4e768a481d0392090b94e75 409 Gene3D G3DSA:3.90.1150.10 264 407 5.4E-32 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS07480 356a47740d3a4c7354ad3bc6355fe41f 60 SUPERFAMILY SSF103511 17 60 1.2E-11 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS07480 356a47740d3a4c7354ad3bc6355fe41f 60 Gene3D G3DSA:1.10.3460.10 18 51 6.8E-6 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS07480 356a47740d3a4c7354ad3bc6355fe41f 60 Pfam PF00504 Chlorophyll A-B binding protein 19 51 3.0E-6 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS16080 72d7e91f100da037fcb1256c9a3f55ac 298 Pfam PF00561 alpha/beta hydrolase fold 24 284 5.7E-24 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS16080 72d7e91f100da037fcb1256c9a3f55ac 298 SUPERFAMILY SSF53474 17 297 4.9E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS16080 72d7e91f100da037fcb1256c9a3f55ac 298 Gene3D G3DSA:3.40.50.1820 7 297 3.5E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 SUPERFAMILY SSF51011 650 753 6.33E-37 T 06-07-2017 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 SUPERFAMILY SSF81296 15 117 6.47E-20 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Gene3D G3DSA:2.60.40.1180 650 752 1.5E-37 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 25 102 1.9E-6 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 127 208 4.5E-24 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 SUPERFAMILY SSF81296 141 197 1.68E-10 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 104 753 44.444 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 SUPERFAMILY SSF51445 182 642 4.8E-114 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Gene3D G3DSA:2.60.40.10 116 223 6.5E-41 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Gene3D G3DSA:2.60.40.10 16 105 3.0E-18 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 278 751 3.7E-252 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 654 752 1.7E-25 T 06-07-2017 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Gene3D G3DSA:3.20.20.80 247 637 3.2E-87 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 PIRSF PIRSF000463 6 762 3.0E-290 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 Pfam PF00128 Alpha amylase, catalytic domain 298 372 1.2E-10 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS23895 2aa03eeb6fb0da287d848ef0a2c67d33 762 SMART SM00642 283 636 3.8E-6 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS07285 99149b226a0739a5f013f03afb0ffad7 246 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 139 224 4.5E-6 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07285 99149b226a0739a5f013f03afb0ffad7 246 Gene3D G3DSA:3.30.1220.10 137 225 9.4E-4 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07285 99149b226a0739a5f013f03afb0ffad7 246 SUPERFAMILY SSF90002 137 225 9.29E-5 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07285 99149b226a0739a5f013f03afb0ffad7 246 Gene3D G3DSA:3.40.50.300 10 37 3.5E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17955 33e2615b402fad6e84e2eee265112209 399 SUPERFAMILY SSF88659 299 360 1.12E-8 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS17955 33e2615b402fad6e84e2eee265112209 399 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 74 359 2.9E-30 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS17955 33e2615b402fad6e84e2eee265112209 399 Pfam PF04545 Sigma-70, region 4 310 351 2.6E-6 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS17955 33e2615b402fad6e84e2eee265112209 399 Gene3D G3DSA:1.10.10.10 300 362 9.2E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 SUPERFAMILY SSF102114 65 280 3.53E-37 T 06-07-2017 APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 Pfam PF04055 Radical SAM superfamily 77 256 9.5E-30 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 391 483 7.6E-22 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 Gene3D G3DSA:3.20.20.70 67 334 2.9E-43 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 77 88 - T 06-07-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 Gene3D G3DSA:3.30.420.130 378 488 2.1E-35 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 SUPERFAMILY SSF53146 379 487 1.1E-30 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11635 6487210c250cc46e69073274b3cbb32c 493 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 49 483 1.5E-204 T 06-07-2017 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 TIGRFAM TIGR02654 circ_KaiB: circadian clock protein KaiB 5 91 3.3E-56 T 06-07-2017 IPR013474 Circadian clock protein KaiB GO:0007623 APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 Pfam PF07689 KaiB domain 11 91 7.0E-29 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 SMART SM01248 11 92 3.0E-44 T 06-07-2017 IPR011649 KaiB domain GO:0048511 APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 Hamap MF_01835 Circadian clock protein KaiB [kaiB]. 1 104 38.726 T 06-07-2017 IPR013474 Circadian clock protein KaiB GO:0007623 APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 Gene3D G3DSA:3.40.30.10 5 103 2.1E-41 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS07440 b45ea3bf62b08dc7a05abc56041d03e9 105 SUPERFAMILY SSF52833 6 96 1.05E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 Gene3D G3DSA:1.20.1080.10 7 239 1.4E-40 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 PRINTS PR00783 Major intrinsic protein family signature 174 196 1.7E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 PRINTS PR00783 Major intrinsic protein family signature 57 81 1.7E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 PRINTS PR00783 Major intrinsic protein family signature 94 113 1.7E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 PRINTS PR00783 Major intrinsic protein family signature 211 231 1.7E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 PRINTS PR00783 Major intrinsic protein family signature 144 162 1.7E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 SUPERFAMILY SSF81338 4 233 3.27E-45 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 ProSitePatterns PS00221 MIP family signature. 75 83 - T 06-07-2017 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS28130 aa843568a0cfe8575d4fc72b3d80347c 268 Pfam PF00230 Major intrinsic protein 14 228 4.7E-32 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 180 208 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 Pfam PF00107 Zinc-binding dehydrogenase 187 307 1.6E-22 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 Gene3D G3DSA:3.40.50.720 180 293 6.3E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 SUPERFAMILY SSF50129 7 177 4.11E-50 T 06-07-2017 IPR011032 GroES-like APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 145 7.1E-25 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 Gene3D G3DSA:3.90.180.10 2 179 1.2E-62 T 06-07-2017 IPR011032 GroES-like APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 SMART SM00829 11 290 1.4E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT55_RS20280 52d69333692e870b4390e2bc41f166b5 351 SUPERFAMILY SSF51735 150 313 5.09E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 Gene3D G3DSA:3.90.1200.10 322 358 2.8E-5 T 06-07-2017 APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 Gene3D G3DSA:3.30.200.20 174 217 2.5E-4 T 06-07-2017 APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 Pfam PF03109 ABC1 family 156 274 3.2E-36 T 06-07-2017 IPR004147 UbiB domain APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 SUPERFAMILY SSF56112 139 202 3.69E-28 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 SUPERFAMILY SSF56112 241 353 3.69E-28 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS04970 f0de5eca1df6c754b004212f8692166e 654 SUPERFAMILY SSF56112 387 453 3.69E-28 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS08640 4d090cf0ff2ddefc7a2eda493ed7f861 177 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 86 174 8.4E-36 T 06-07-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 APT55_RS08640 4d090cf0ff2ddefc7a2eda493ed7f861 177 SUPERFAMILY SSF54534 62 176 2.36E-47 T 06-07-2017 APT55_RS08640 4d090cf0ff2ddefc7a2eda493ed7f861 177 Gene3D G3DSA:3.10.50.40 62 176 3.4E-52 T 06-07-2017 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Gene3D G3DSA:1.10.287.380 967 1038 3.9E-13 T 06-07-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Hamap MF_02004 Valine--tRNA ligase [valS]. 5 1038 15.936 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 PRINTS PR00986 Valyl-tRNA synthetase signature 233 250 8.3E-37 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 PRINTS PR00986 Valyl-tRNA synthetase signature 460 481 8.3E-37 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 PRINTS PR00986 Valyl-tRNA synthetase signature 492 510 8.3E-37 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 PRINTS PR00986 Valyl-tRNA synthetase signature 348 361 8.3E-37 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 PRINTS PR00986 Valyl-tRNA synthetase signature 39 50 8.3E-37 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 SUPERFAMILY SSF46589 974 1038 9.42E-15 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Gene3D G3DSA:3.90.740.10 198 340 2.8E-53 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 SUPERFAMILY SSF50677 193 344 1.96E-65 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 SUPERFAMILY SSF52374 343 579 6.97E-136 T 06-07-2017 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 SUPERFAMILY SSF52374 5 195 6.97E-136 T 06-07-2017 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Gene3D G3DSA:1.10.730.10 590 770 1.1E-60 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 974 1038 1.7E-18 T 06-07-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 580 4.7E-209 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Pfam PF08264 Anticodon-binding domain of tRNA 631 779 6.0E-42 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Gene3D G3DSA:3.40.50.620 8 196 6.6E-140 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Gene3D G3DSA:3.40.50.620 343 570 6.6E-140 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 Pfam PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase 843 925 7.7E-19 T 06-07-2017 IPR025564 Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 TIGRFAM TIGR00422 valS: valine--tRNA ligase 6 821 0.0 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 SUPERFAMILY SSF47323 600 820 1.68E-64 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS20560 70e161c3cb1fbc024f1ba80ae1c2c3a0 1038 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 SUPERFAMILY SSF51905 268 381 1.2E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 SUPERFAMILY SSF51905 4 171 1.2E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 2.8E-14 T 06-07-2017 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 287 2.8E-14 T 06-07-2017 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 2.8E-14 T 06-07-2017 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 TIGRFAM TIGR02028 ChlP: geranylgeranyl reductase 3 401 4.0E-223 T 06-07-2017 IPR011774 Geranylgeranyl reductase, plant/cyanobacteria GO:0045550|GO:0051188|GO:0055114 KEGG: 00900+1.3.1.83 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 Gene3D G3DSA:3.50.50.60 3 18 8.3E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 Gene3D G3DSA:3.50.50.60 85 163 8.3E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 165 1.6E-7 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 Gene3D G3DSA:3.30.9.10 164 314 6.6E-34 T 06-07-2017 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 5 307 7.7E-56 T 06-07-2017 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 4 401 1.7E-162 T 06-07-2017 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83 APT55_RS12320 3a70665e6e2415fc203ec0440c38f2ab 407 Gene3D G3DSA:3.40.50.720 19 83 6.9E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 2.4E-56 T 06-07-2017 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 SUPERFAMILY SSF51338 4 179 4.9E-61 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Pfam PF01979 Amidohydrolase family 127 455 3.8E-85 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 06-07-2017 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 SUPERFAMILY SSF51556 483 569 6.81E-207 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 SUPERFAMILY SSF51556 131 434 6.81E-207 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 SUPERFAMILY SSF51338 424 479 1.62E-6 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 1.7E-33 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 1.7E-33 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 1.7E-33 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 1.7E-33 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Hamap MF_01953 Urease subunit alpha [ureC]. 3 569 58.186 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 569 3.1E-304 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Gene3D G3DSA:2.30.40.10 71 145 4.4E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Gene3D G3DSA:3.20.20.140 490 567 2.2E-217 T 06-07-2017 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 Gene3D G3DSA:3.20.20.140 146 431 2.2E-217 T 06-07-2017 APT55_RS24655 2bac32a637288d1c87f3dbeba37f1ea9 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 06-07-2017 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS18915 dc458431b98fa706896cd90adb88a93d 370 SUPERFAMILY SSF101112 50 161 1.28E-19 T 06-07-2017 IPR023222 PsbQ-like domain APT55_RS18915 dc458431b98fa706896cd90adb88a93d 370 Gene3D G3DSA:1.20.120.290 50 160 4.5E-17 T 06-07-2017 IPR023222 PsbQ-like domain APT55_RS18915 dc458431b98fa706896cd90adb88a93d 370 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 187 352 1.3E-28 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS18915 dc458431b98fa706896cd90adb88a93d 370 SUPERFAMILY SSF50891 174 351 2.92E-28 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS18915 dc458431b98fa706896cd90adb88a93d 370 Gene3D G3DSA:2.40.100.10 170 351 3.0E-24 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF07719 Tetratricopeptide repeat 438 469 4.8E-5 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Gene3D G3DSA:3.40.630.30 176 330 2.0E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF13480 Acetyltransferase (GNAT) domain 192 337 1.6E-21 T 06-07-2017 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Gene3D G3DSA:1.25.40.10 374 524 6.2E-37 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Gene3D G3DSA:1.25.40.10 539 771 1.8E-47 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF13432 Tetratricopeptide repeat 375 436 1.5E-9 T 06-07-2017 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF13432 Tetratricopeptide repeat 540 599 3.2E-9 T 06-07-2017 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF13414 TPR repeat 634 674 1.3E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF13414 TPR repeat 727 768 1.1E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SUPERFAMILY SSF55729 181 346 2.49E-15 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 534 567 0.93 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 661 694 2.2E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 437 470 1.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 720 753 3.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 627 660 0.021 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 568 601 2.9E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 475 508 6.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 369 402 9.3 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SMART SM00028 403 436 3.6E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 Pfam PF00515 Tetratricopeptide repeat 477 507 1.2E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SUPERFAMILY SSF48452 633 770 5.94E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18720 9bd0cc130fb1d52fa7d01f9bab19d551 779 SUPERFAMILY SSF48452 374 615 2.28E-41 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS30040 fa43056f12cb86e1482292b3f7a3c614 245 Pfam PF14460 Prokaryotic E2 family D 53 222 1.5E-23 T 06-07-2017 IPR032787 Prokaryotic E2 family D APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SMART SM00387 454 568 4.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SMART SM00304 196 248 8.8E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Gene3D G3DSA:1.10.287.130 310 340 2.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Gene3D G3DSA:1.10.287.130 377 406 2.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SUPERFAMILY SSF55874 407 567 2.36E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Gene3D G3DSA:3.30.565.10 407 568 9.4E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 566 1.6E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SUPERFAMILY SSF47384 378 407 1.94E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SUPERFAMILY SSF47384 308 349 1.94E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Pfam PF00672 HAMP domain 178 245 4.6E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 545 2.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 510 2.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 524 2.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 565 2.7E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 SUPERFAMILY SSF158472 198 246 3.01E-8 T 06-07-2017 APT55_RS10830 e2b15907281e90c166fde13c2b292af3 574 Pfam PF00512 His Kinase A (phospho-acceptor) domain 314 409 1.7E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Gene3D G3DSA:1.10.150.20 72 145 2.5E-27 T 06-07-2017 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Gene3D G3DSA:1.10.8.10 158 202 8.7E-6 T 06-07-2017 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Gene3D G3DSA:2.40.50.140 1 70 1.6E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 SUPERFAMILY SSF50249 1 68 6.85E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Pfam PF07499 RuvA, C-terminal domain 158 207 1.3E-15 T 06-07-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 SUPERFAMILY SSF47781 71 141 1.22E-21 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 SMART SM00278 113 132 0.82 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 SMART SM00278 78 97 3.6 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 SUPERFAMILY SSF46929 157 207 4.05E-6 T 06-07-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Pfam PF14520 Helix-hairpin-helix domain 77 134 1.6E-15 T 06-07-2017 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 207 29.239 T 06-07-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 Pfam PF01330 RuvA N terminal domain 1 67 1.7E-18 T 06-07-2017 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT55_RS21745 2adca0c2d83902084cf18d9f7e955c81 208 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 3.5E-54 T 06-07-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 APT55_RS09420 a00893f6c825fff035ebc33b9ca42407 402 Pfam PF01794 Ferric reductase like transmembrane component 232 345 1.5E-9 T 06-07-2017 IPR013130 Ferric reductase transmembrane component-like domain APT55_RS09420 a00893f6c825fff035ebc33b9ca42407 402 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 8 219 2.7E-49 T 06-07-2017 APT55_RS22605 6cb7e7e9bec616c86854c1eab573846b 338 Pfam PF12849 PBP superfamily domain 68 322 2.3E-39 T 06-07-2017 IPR024370 PBP domain APT55_RS22605 6cb7e7e9bec616c86854c1eab573846b 338 SUPERFAMILY SSF53850 68 337 1.65E-49 T 06-07-2017 APT55_RS22605 6cb7e7e9bec616c86854c1eab573846b 338 Gene3D G3DSA:3.40.190.10 152 296 7.8E-27 T 06-07-2017 APT55_RS01990 d3f88ec8cdb29b25f54c758e070a5209 74 Gene3D G3DSA:3.30.920.30 4 62 1.3E-13 T 06-07-2017 APT55_RS01990 d3f88ec8cdb29b25f54c758e070a5209 74 SUPERFAMILY SSF54786 5 67 3.84E-13 T 06-07-2017 APT55_RS01990 d3f88ec8cdb29b25f54c758e070a5209 74 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 10 60 1.7E-13 T 06-07-2017 IPR012933 HicA mRNA interferase family GO:0003729 APT55_RS14345 717798bcf7988f2f1a19f90056a4820f 567 Pfam PF00395 S-layer homology domain 72 114 2.2E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS14345 717798bcf7988f2f1a19f90056a4820f 567 Pfam PF04966 Carbohydrate-selective porin, OprB family 138 567 2.3E-69 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS14345 717798bcf7988f2f1a19f90056a4820f 567 Gene3D G3DSA:2.40.160.10 345 482 1.6E-4 T 06-07-2017 IPR023614 Porin domain APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Gene3D G3DSA:1.10.8.60 252 328 8.4E-21 T 06-07-2017 APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Gene3D G3DSA:1.10.8.60 520 590 3.5E-14 T 06-07-2017 APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 SUPERFAMILY SSF52540 75 331 3.13E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Gene3D G3DSA:3.40.50.300 74 251 2.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Gene3D G3DSA:3.40.50.300 336 519 3.8E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 ProSitePatterns PS00674 AAA-protein family signature. 214 232 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 380 511 5.6E-43 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 114 243 2.9E-45 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 SMART SM00382 376 514 1.4E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 SMART SM00382 110 246 1.7E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07965 d74b37b2bce8b33eda6ebf6e30845fd4 599 SUPERFAMILY SSF52540 334 595 2.84E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PIRSF PIRSF000349 1 199 4.9E-79 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 Gene3D G3DSA:1.10.287.990 22 88 1.1E-23 T 06-07-2017 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 SUPERFAMILY SSF54719 90 198 1.57E-44 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 SUPERFAMILY SSF46609 3 88 9.69E-34 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 195 4.1E-39 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 88 1.4E-27 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 162 169 - T 06-07-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.4E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 1.4E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 1.4E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PRINTS PR01703 Manganese superoxide dismutase signature 71 84 1.4E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08880 6356119433b65404f7f27ebae3c4aee2 199 PRINTS PR01703 Manganese superoxide dismutase signature 160 172 1.4E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Hamap MF_00259 Aminomethyltransferase [gcvT]. 7 362 45.713 T 06-07-2017 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 SUPERFAMILY SSF101790 273 362 2.13E-27 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 PIRSF PIRSF006487 2 364 6.7E-93 T 06-07-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 SUPERFAMILY SSF103025 8 281 1.07E-96 T 06-07-2017 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Gene3D G3DSA:3.30.1360.120 8 59 2.2E-50 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Gene3D G3DSA:3.30.1360.120 148 235 2.2E-50 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 257 1.5E-85 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Gene3D G3DSA:3.30.70.1400 60 143 4.2E-30 T 06-07-2017 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Gene3D G3DSA:2.40.30.110 282 356 3.1E-29 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 8 361 1.0E-148 T 06-07-2017 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APT55_RS11390 b08a141d18ad404c6a4941fb7eed0fc5 364 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 265 356 1.0E-27 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT55_RS30115 fb8a93f937e2af6639dc45653de2fd3d 89 SUPERFAMILY SSF47413 13 76 1.13E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS30115 fb8a93f937e2af6639dc45653de2fd3d 89 SMART SM00530 17 74 2.0E-8 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS30115 fb8a93f937e2af6639dc45653de2fd3d 89 Gene3D G3DSA:1.10.260.40 13 75 3.2E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS30115 fb8a93f937e2af6639dc45653de2fd3d 89 Pfam PF01381 Helix-turn-helix 23 74 7.8E-10 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 SUPERFAMILY SSF56655 8 263 4.58E-82 T 06-07-2017 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 Pfam PF00459 Inositol monophosphatase family 9 263 5.3E-72 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 215 229 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 Gene3D G3DSA:3.40.190.80 156 264 1.1E-38 T 06-07-2017 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 108 127 1.8E-8 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 160 186 1.8E-8 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 202 214 1.8E-8 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 Gene3D G3DSA:3.30.540.10 7 155 3.6E-49 T 06-07-2017 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS25375 552a854b0deb03054d5ef6743247f868 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 6.2E-50 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 454 469 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 382 406 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 50 73 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 349 370 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 406 429 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 112 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 469 489 2.4E-33 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 Gene3D G3DSA:1.20.1600.10 169 342 2.1E-4 T 06-07-2017 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 Gene3D G3DSA:2.40.50.100 86 114 4.5E-12 T 06-07-2017 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 Gene3D G3DSA:2.40.50.100 343 369 4.5E-12 T 06-07-2017 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 Pfam PF13533 Biotin-lipoyl like 83 128 1.9E-9 T 06-07-2017 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 Pfam PF13437 HlyD family secretion protein 339 456 6.6E-17 T 06-07-2017 APT55_RS23755 e8afd61af389494cf05520d8e31708e8 490 SUPERFAMILY SSF51230 79 123 3.3E-5 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS15460 a8b6a858620608e36c66226332b91c35 170 SUPERFAMILY SSF53271 2 164 5.9E-34 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS15460 a8b6a858620608e36c66226332b91c35 170 Gene3D G3DSA:3.40.50.2020 2 160 3.7E-37 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS15460 a8b6a858620608e36c66226332b91c35 170 Pfam PF00156 Phosphoribosyl transferase domain 8 156 9.6E-27 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 SUPERFAMILY SSF52540 6 209 5.5E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 181 2.4E-60 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 SUPERFAMILY SSF90002 225 318 2.09E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 Gene3D G3DSA:3.40.50.300 5 201 2.1E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 Gene3D G3DSA:3.30.1220.10 211 318 2.5E-36 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 SMART SM00833 224 318 1.6E-10 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07040 5c9f7ddcd62d990211f22c5b3ad659f6 319 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 226 318 2.2E-20 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS24800 d19200611f0c6e0043b59c6386588a13 240 Pfam PF05277 Protein of unknown function (DUF726) 95 226 2.5E-13 T 06-07-2017 IPR007941 Protein of unknown function DUF726 APT55_RS24800 d19200611f0c6e0043b59c6386588a13 240 SUPERFAMILY SSF53474 43 199 3.25E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS24800 d19200611f0c6e0043b59c6386588a13 240 Gene3D G3DSA:3.40.50.1820 40 195 5.1E-9 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 Pfam PF14524 Wzt C-terminal domain 287 391 6.0E-12 T 06-07-2017 IPR029439 Wzt, C-terminal APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 Gene3D G3DSA:2.70.50.60 285 368 2.6E-5 T 06-07-2017 APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 Gene3D G3DSA:3.40.50.300 51 253 3.7E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 Pfam PF00005 ABC transporter 59 190 1.4E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 SMART SM00382 68 255 4.9E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS10635 4799dfd574dcaa090c700cc5e4a99a75 420 SUPERFAMILY SSF52540 45 251 5.22E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Pfam PF13191 AAA ATPase domain 259 405 2.8E-18 T 06-07-2017 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 SUPERFAMILY SSF48452 109 230 2.0E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 SUPERFAMILY SSF46894 2 78 5.39E-8 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 SUPERFAMILY SSF52540 258 500 5.43E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Gene3D G3DSA:3.40.50.300 248 443 1.3E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Gene3D G3DSA:1.25.40.10 108 207 1.8E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Gene3D G3DSA:1.25.40.10 707 720 1.8E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Gene3D G3DSA:1.25.40.10 721 973 4.7E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 SMART SM01043 99 229 3.4E-41 T 06-07-2017 IPR005158 Bacterial transcriptional activator domain APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 SUPERFAMILY SSF48452 704 856 1.2E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11810 2a642a09ee3832a308dac0f06a1874dd 1009 Pfam PF03704 Bacterial transcriptional activator domain 107 229 1.7E-26 T 06-07-2017 IPR005158 Bacterial transcriptional activator domain APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 Pfam PF01926 50S ribosome-binding GTPase 161 281 3.8E-23 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 Hamap MF_01454 GTPase Obg [obg]. 2 330 46.384 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 SUPERFAMILY SSF52540 151 333 3.02E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 Gene3D G3DSA:3.40.50.300 160 344 1.9E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 Pfam PF01018 GTP1/OBG 3 158 9.7E-61 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 PIRSF PIRSF002401 1 354 1.7E-137 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 Gene3D G3DSA:2.70.210.12 2 156 2.2E-58 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 06-07-2017 IPR006074 GTP1/OBG, conserved site GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 329 4.0E-138 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APT55_RS20260 ffcc03f407f15e2dcf268f0bd2260129 355 SUPERFAMILY SSF82051 3 158 1.57E-55 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 06-07-2017 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 PRINTS PR00189 Transthyretin signature 97 119 2.9E-7 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 PRINTS PR00189 Transthyretin signature 3 23 2.9E-7 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 SUPERFAMILY SSF49472 1 119 1.83E-39 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 119 5.9E-39 T 06-07-2017 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 Pfam PF00576 HIUase/Transthyretin family 4 118 4.2E-36 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS21815 fbcb10620dd7808c4560b07beaae1473 119 Gene3D G3DSA:2.60.40.180 2 119 3.1E-38 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APT55_RS25310 e65db39d44045a520e508b68d35b5239 120 SMART SM00448 2 115 4.1E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25310 e65db39d44045a520e508b68d35b5239 120 SUPERFAMILY SSF52172 2 118 2.42E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS25310 e65db39d44045a520e508b68d35b5239 120 Gene3D G3DSA:3.40.50.2300 2 118 1.3E-38 T 06-07-2017 APT55_RS25310 e65db39d44045a520e508b68d35b5239 120 Pfam PF00072 Response regulator receiver domain 4 115 5.3E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17565 4ec6ea18b60db4202af5a3457dd3727b 326 SMART SM00382 49 234 2.5E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17565 4ec6ea18b60db4202af5a3457dd3727b 326 Pfam PF00005 ABC transporter 40 184 6.8E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS17565 4ec6ea18b60db4202af5a3457dd3727b 326 Gene3D G3DSA:3.40.50.300 4 249 1.7E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17565 4ec6ea18b60db4202af5a3457dd3727b 326 SUPERFAMILY SSF52540 35 253 2.13E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 263 6.4E-52 T 06-07-2017 APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.2E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 4.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 4.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 Gene3D G3DSA:3.40.50.720 6 263 2.0E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS02715 704228c5fcc49c94f1a7cb42439cb86d 266 SUPERFAMILY SSF51735 9 263 1.02E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03690 ec5a8e66eb80b1126d0908b130ef7b4e 363 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 362 8.2E-155 T 06-07-2017 IPR002780 Hydrogenase formation HypD protein GO:0046872 APT55_RS03690 ec5a8e66eb80b1126d0908b130ef7b4e 363 PIRSF PIRSF005622 1 363 4.6E-158 T 06-07-2017 IPR002780 Hydrogenase formation HypD protein GO:0046872 APT55_RS03690 ec5a8e66eb80b1126d0908b130ef7b4e 363 Pfam PF01924 Hydrogenase formation hypA family 12 358 6.0E-155 T 06-07-2017 IPR002780 Hydrogenase formation HypD protein GO:0046872 APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 90 363 6.8E-15 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 SUPERFAMILY SSF111369 210 368 4.97E-21 T 06-07-2017 APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 230 395 3.4E-32 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 Gene3D G3DSA:2.40.50.100 95 128 1.7E-20 T 06-07-2017 APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 Gene3D G3DSA:2.40.50.100 259 293 1.7E-20 T 06-07-2017 APT55_RS26860 4874386d3a734ac5bf4492b7fc571b10 478 SUPERFAMILY SSF111369 85 160 3.14E-9 T 06-07-2017 APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 SUPERFAMILY SSF53850 2 253 8.58E-49 T 06-07-2017 APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 SMART SM00062 34 255 4.3E-46 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 1.1E-39 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 Gene3D G3DSA:3.40.190.10 114 211 2.0E-11 T 06-07-2017 APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 Gene3D G3DSA:3.40.190.10 29 113 2.2E-27 T 06-07-2017 APT55_RS17400 d71b358e3123cefbfd6251d2fbedb915 255 Gene3D G3DSA:3.40.190.10 212 252 2.2E-27 T 06-07-2017 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 SMART SM00872 477 555 4.4E-27 T 06-07-2017 IPR015341 Glycoside hydrolase family 38, central domain GO:0004553|GO:0008270 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Gene3D G3DSA:3.20.110.10 209 479 1.4E-77 T 06-07-2017 IPR027291 Glycoside hydrolase 38/57, N-terminal domain APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Gene3D G3DSA:2.60.40.1180 587 666 1.9E-5 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Gene3D G3DSA:1.20.1270.50 480 561 5.8E-19 T 06-07-2017 IPR015341 Glycoside hydrolase family 38, central domain GO:0004553|GO:0008270 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 SUPERFAMILY SSF88713 214 471 2.32E-66 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 SUPERFAMILY SSF74650 579 1029 1.67E-88 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Pfam PF07748 Glycosyl hydrolases family 38 C-terminal domain 590 1027 7.5E-74 T 06-07-2017 IPR011682 Glycosyl hydrolase family 38, C-terminal GO:0006013|GO:0015923 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Pfam PF01074 Glycosyl hydrolases family 38 N-terminal domain 217 472 6.3E-75 T 06-07-2017 IPR000602 Glycoside hydrolase family 38, N-terminal domain GO:0004559|GO:0005975 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 Pfam PF09261 Alpha mannosidase middle domain 477 554 1.9E-23 T 06-07-2017 IPR015341 Glycoside hydrolase family 38, central domain GO:0004553|GO:0008270 APT55_RS15595 0277a754df26cd037a50b1935b72cc40 1032 SUPERFAMILY SSF88688 476 562 1.57E-22 T 06-07-2017 IPR028995 Glycoside hydrolase families 57/38, central domain APT55_RS00265 be1d405a0af8e6ff8d242ff4417199e2 327 SMART SM00382 49 235 1.0E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS00265 be1d405a0af8e6ff8d242ff4417199e2 327 SUPERFAMILY SSF52540 33 249 1.38E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00265 be1d405a0af8e6ff8d242ff4417199e2 327 Pfam PF00005 ABC transporter 41 184 4.6E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS00265 be1d405a0af8e6ff8d242ff4417199e2 327 Gene3D G3DSA:3.40.50.300 5 249 3.4E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 Gene3D G3DSA:2.40.100.10 50 236 4.1E-40 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 235 3.6E-43 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 SUPERFAMILY SSF50891 52 125 3.07E-38 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 SUPERFAMILY SSF50891 157 239 3.07E-38 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 6.1E-6 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 209 6.1E-6 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS11980 e0b3d12404bb22930810261902d2641a 269 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 6.1E-6 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS01805 1eb51ec379bba5884c6d852927505d22 486 Pfam PF01926 50S ribosome-binding GTPase 77 206 6.4E-17 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS01805 1eb51ec379bba5884c6d852927505d22 486 Gene3D G3DSA:3.40.50.300 64 226 1.8E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01805 1eb51ec379bba5884c6d852927505d22 486 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 77 214 2.2E-12 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS01805 1eb51ec379bba5884c6d852927505d22 486 SUPERFAMILY SSF52540 55 230 8.09E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01805 1eb51ec379bba5884c6d852927505d22 486 Pfam PF05128 Domain of unknown function (DUF697) 294 461 9.5E-41 T 06-07-2017 IPR021147 Protein of unknown function DUF697 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 72 185 1.3E-32 T 06-07-2017 IPR013856 Peptidase M4 domain GO:0004222 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 Gene3D G3DSA:3.10.170.10 72 189 4.8E-46 T 06-07-2017 IPR013856 Peptidase M4 domain GO:0004222 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 SUPERFAMILY SSF55486 73 356 2.01E-89 T 06-07-2017 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 188 356 5.2E-58 T 06-07-2017 IPR001570 Peptidase M4, C-terminal GO:0004222 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 Gene3D G3DSA:1.10.390.10 190 356 9.2E-58 T 06-07-2017 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 176 192 4.2E-31 T 06-07-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 278 294 4.2E-31 T 06-07-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 197 208 4.2E-31 T 06-07-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT55_RS27325 9cc3bb4ef796d5a557c761cf742a6d2a 357 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 140 160 4.2E-31 T 06-07-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 225 242 3.4E-33 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 244 262 3.4E-33 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 55 69 3.4E-33 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 267 287 3.4E-33 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 88 108 3.4E-33 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 Pfam PF01555 DNA methylase 56 280 1.7E-47 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 SUPERFAMILY SSF53335 29 287 3.13E-62 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 Gene3D G3DSA:3.40.50.150 36 295 2.5E-66 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23695 6a1c73c6a2fc0de1a73c56da83c74794 315 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 59 65 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 SUPERFAMILY SSF53784 5 328 9.42E-98 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 ProSitePatterns PS00433 Phosphofructokinase signature. 270 288 - T 06-07-2017 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 9 28 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 166 182 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 184 201 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 221 233 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 146 164 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 100 116 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 128 145 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 35 48 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 266 288 3.9E-68 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 Gene3D G3DSA:3.40.50.450 6 217 2.4E-60 T 06-07-2017 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 5 352 39.356 T 06-07-2017 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 Pfam PF00365 Phosphofructokinase 6 302 1.2E-93 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS00365 7d0aa5b626919cf34f46c3ca0598e94e 353 PIRSF PIRSF000532 3 353 1.1E-120 T 06-07-2017 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 77 167 2.3E-6 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 52 193 5.8E-18 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 SUPERFAMILY SSF56784 11 215 1.25E-51 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 Gene3D G3DSA:3.40.50.1000 85 216 2.6E-41 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 15 192 1.6E-33 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 Gene3D G3DSA:1.10.150.240 25 84 1.2E-9 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 5.4E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 12 23 5.4E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 5.4E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS13015 996e7f838d920d8825cc498c1a4d1ae6 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 5.4E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 Pfam PF00490 Delta-aminolevulinic acid dehydratase 11 326 5.9E-149 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 SMART SM01004 8 329 5.7E-238 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 248 260 - T 06-07-2017 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 SUPERFAMILY SSF51569 7 329 1.61E-145 T 06-07-2017 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 128 142 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 158 177 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 248 264 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 303 322 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 196 215 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 273 288 4.5E-60 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 PIRSF PIRSF001415 1 330 1.2E-152 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS07270 2c7161f40067a2c020604a1c3d83ed55 330 Gene3D G3DSA:3.20.20.70 6 329 7.9E-153 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS09790 10e00c5e0ade4c0bc3a051c57be1e8b7 296 Pfam PF05137 Fimbrial assembly protein (PilN) 116 239 8.3E-12 T 06-07-2017 IPR007813 Fimbrial assembly PilN APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Gene3D G3DSA:2.130.10.10 777 1068 2.8E-80 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 962 976 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 PRINTS PR00320 G protein beta WD-40 repeat signature 832 846 3.2E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 PRINTS PR00320 G protein beta WD-40 repeat signature 874 888 3.2E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 PRINTS PR00320 G protein beta WD-40 repeat signature 1010 1024 3.2E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Pfam PF00400 WD domain, G-beta repeat 947 975 8.0E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Pfam PF00400 WD domain, G-beta repeat 892 928 9.8E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Pfam PF00400 WD domain, G-beta repeat 987 1023 4.2E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 832 846 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Gene3D G3DSA:3.40.50.1460 18 100 3.9E-6 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SUPERFAMILY SSF50978 776 1067 4.76E-71 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Pfam PF00656 Caspase domain 18 220 4.7E-15 T 06-07-2017 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SUPERFAMILY SSF52129 16 218 4.5E-7 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1010 1024 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 1026 1065 2.7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 890 929 3.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 984 1023 1.1E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 756 800 150.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 806 845 3.3E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 934 975 9.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 SMART SM00320 848 887 6.0E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02555 d534f58381339387197c56ad8427fa94 1087 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 780 860 3.2E-7 T 06-07-2017 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 237 254 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 328 340 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 116 128 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 137 157 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 PRINTS PR00834 HtrA/DegQ protease family signature 215 232 2.9E-46 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 SMART SM00228 280 370 1.1E-14 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 Gene3D G3DSA:2.40.10.10 55 168 7.9E-37 T 06-07-2017 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 SUPERFAMILY SSF50494 56 268 1.35E-65 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 SUPERFAMILY SSF50156 261 378 3.94E-22 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 Pfam PF13365 Trypsin-like peptidase domain 107 244 2.1E-35 T 06-07-2017 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 Gene3D G3DSA:2.30.42.10 283 383 1.4E-28 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 Pfam PF13180 PDZ domain 280 378 2.2E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS08165 a5aca6b6cf01b14ea0bc97c125a6970b 386 Gene3D G3DSA:2.40.10.10 169 282 8.8E-43 T 06-07-2017 APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 1.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 1.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 1.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 3.4E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 SUPERFAMILY SSF51735 6 258 7.88E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 Gene3D G3DSA:3.40.50.720 1 258 7.0E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS09820 967c8c93ee758d2b24937cc319fed784 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 256 2.8E-66 T 06-07-2017 APT55_RS05530 c551c148179a97e4b29f6f55d2196c11 454 Pfam PF12770 CHAT domain 167 452 6.0E-66 T 06-07-2017 IPR024983 CHAT domain APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 207 1.1E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SMART SM00304 90 142 6.5E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 Pfam PF00672 HAMP domain 71 138 8.5E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 Gene3D G3DSA:3.30.565.10 194 364 6.2E-50 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 303 7.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 7.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 317 7.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 342 7.0E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SUPERFAMILY SSF47384 126 207 7.06E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SMART SM00387 253 364 2.1E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 361 7.4E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SMART SM00388 143 207 7.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SUPERFAMILY SSF158472 91 139 2.09E-8 T 06-07-2017 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 Gene3D G3DSA:1.10.287.130 133 193 3.3E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS13120 70b2204a9e067d55b716a06b42f25aa8 388 SUPERFAMILY SSF55874 196 363 6.42E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS06410 369ba08763b84c18dfcb00f27d72e216 430 Pfam PF03237 Terminase-like family 95 404 1.5E-22 T 06-07-2017 IPR004921 Terminase, large subunit APT55_RS02980 c903f6986083ee1ee8b8b95b984582a9 381 Gene3D G3DSA:3.40.190.10 179 325 1.6E-56 T 06-07-2017 APT55_RS02980 c903f6986083ee1ee8b8b95b984582a9 381 SUPERFAMILY SSF53850 69 375 6.96E-72 T 06-07-2017 APT55_RS02980 c903f6986083ee1ee8b8b95b984582a9 381 Gene3D G3DSA:3.40.190.10 83 178 8.4E-12 T 06-07-2017 APT55_RS02980 c903f6986083ee1ee8b8b95b984582a9 381 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 68 375 1.8E-82 T 06-07-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT55_RS02980 c903f6986083ee1ee8b8b95b984582a9 381 Pfam PF13531 Bacterial extracellular solute-binding protein 75 327 3.7E-42 T 06-07-2017 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 Gene3D G3DSA:2.60.120.10 51 135 2.9E-5 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 Pfam PF13545 Crp-like helix-turn-helix domain 148 214 3.9E-14 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 Gene3D G3DSA:1.10.10.10 145 215 1.3E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 SUPERFAMILY SSF46785 146 214 9.78E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 204 2.1E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 173 189 2.1E-5 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 ProSitePatterns PS00042 Crp-type HTH domain signature. 175 198 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 SMART SM00419 167 216 2.6E-14 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS26155 6d659c4bdbb7fee13fdd5a2b105d855e 216 SUPERFAMILY SSF51206 41 134 4.97E-9 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS25015 54a3807531dfd0c73b944554bfba1f4d 342 TIGRFAM TIGR03041 PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein 13 331 1.1E-149 T 06-07-2017 APT55_RS25015 54a3807531dfd0c73b944554bfba1f4d 342 SUPERFAMILY SSF161077 6 340 5.1E-137 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS25015 54a3807531dfd0c73b944554bfba1f4d 342 Pfam PF00421 Photosystem II protein 298 326 2.4E-6 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS25015 54a3807531dfd0c73b944554bfba1f4d 342 Pfam PF00421 Photosystem II protein 11 275 1.7E-67 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 473 6.7E-213 T 06-07-2017 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 Gene3D G3DSA:3.40.718.10 330 472 1.2E-148 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 Gene3D G3DSA:3.40.718.10 11 294 1.2E-148 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 358 377 - T 06-07-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 SUPERFAMILY SSF53659 10 297 4.24E-116 T 06-07-2017 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 SUPERFAMILY SSF53659 327 472 4.24E-116 T 06-07-2017 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 SMART SM01329 28 469 2.4E-157 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS23510 4f8977a2aa4f321a48e22757c7bde582 473 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 29 469 1.2E-98 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 Gene3D G3DSA:1.20.5.510 9 66 8.7E-39 T 06-07-2017 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 TIGRFAM TIGR01156 cytb6/f_IV: cytb6/f complex subunit IV 1 160 7.3E-94 T 06-07-2017 IPR005870 Cytochrome b6/f complex, subunit IV GO:0009767|GO:0042651|GO:0045156 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 SUPERFAMILY SSF81648 6 155 9.0E-43 T 06-07-2017 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 Gene3D G3DSA:1.10.287.980 67 154 1.6E-22 T 06-07-2017 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 65 153 6.6E-18 T 06-07-2017 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 Hamap MF_01344 Cytochrome b6-f complex subunit 4 [petD]. 1 160 44.351 T 06-07-2017 IPR005870 Cytochrome b6/f complex, subunit IV GO:0009767|GO:0042651|GO:0045156 APT55_RS18095 346f94b7f531d9e4776ba96358d801a0 160 PIRSF PIRSF000033 1 160 1.2E-92 T 06-07-2017 IPR005870 Cytochrome b6/f complex, subunit IV GO:0009767|GO:0042651|GO:0045156 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 Gene3D G3DSA:2.30.30.30 12 104 2.2E-25 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 Pfam PF00467 KOW motif 19 48 4.3E-6 T 06-07-2017 IPR005824 KOW APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 SUPERFAMILY SSF50104 13 114 8.17E-32 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 51 115 3.3E-19 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 13 115 3.5E-35 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 14 110 18.728 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 ProSitePatterns PS01108 Ribosomal protein L24 signature. 19 36 - T 06-07-2017 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24760 c6d7dc9aa4b21757458132eda70cb7f3 116 SMART SM00739 15 42 9.1E-5 T 06-07-2017 IPR005824 KOW APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 Gene3D G3DSA:2.30.130.10 225 276 3.2E-9 T 06-07-2017 IPR015947 PUA-like domain APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 212 9.2E-79 T 06-07-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 173 6.6E-56 T 06-07-2017 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 SUPERFAMILY SSF88697 226 278 1.09E-6 T 06-07-2017 IPR015947 PUA-like domain APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 SUPERFAMILY SSF55120 2 223 8.1E-77 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 279 18.925 T 06-07-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 174 216 2.0E-8 T 06-07-2017 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 APT55_RS13240 7843f02946f17681fd5bc0154fa000bd 283 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 227 277 4.7E-12 T 06-07-2017 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 PIRSF PIRSF000124 1 445 3.4E-122 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Gene3D G3DSA:3.40.50.720 267 444 2.7E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 309 2.9E-29 T 06-07-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 3.9E-66 T 06-07-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 SUPERFAMILY SSF51735 1 193 7.04E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 430 5.5E-128 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 SUPERFAMILY SSF48179 204 311 3.23E-18 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Gene3D G3DSA:1.20.5.100 204 231 1.1E-11 T 06-07-2017 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 SMART SM00984 332 434 2.7E-36 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 SUPERFAMILY SSF52413 319 438 9.55E-31 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 PIRSF PIRSF500134 1 443 2.5E-128 T 06-07-2017 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Gene3D G3DSA:3.40.50.720 1 192 1.7E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23000 0b87781e2738e263e35285b90f1b1e84 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 332 434 1.9E-26 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 SUPERFAMILY SSF55031 210 325 1.18E-26 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS21645 287dc31d596f9428e71233380e60c876 410 Gene3D G3DSA:3.30.70.360 223 321 1.3E-34 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS21645 287dc31d596f9428e71233380e60c876 410 SUPERFAMILY SSF53187 333 406 1.29E-78 T 06-07-2017 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 SUPERFAMILY SSF53187 3 220 1.29E-78 T 06-07-2017 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 12 405 2.2E-120 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 Gene3D G3DSA:3.40.630.10 4 222 4.3E-98 T 06-07-2017 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 Gene3D G3DSA:3.40.630.10 348 407 4.3E-98 T 06-07-2017 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 Pfam PF01546 Peptidase family M20/M25/M40 82 402 1.1E-32 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 APT55_RS21645 287dc31d596f9428e71233380e60c876 410 Pfam PF07687 Peptidase dimerisation domain 212 307 2.7E-4 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS21645 287dc31d596f9428e71233380e60c876 410 PIRSF PIRSF001235 6 409 3.4E-133 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 APT55_RS16050 28754c9af72704f2a79b456ae3bab0bd 430 SUPERFAMILY SSF53850 54 309 2.67E-24 T 06-07-2017 APT55_RS16050 28754c9af72704f2a79b456ae3bab0bd 430 Pfam PF13379 NMT1-like family 52 312 1.0E-64 T 06-07-2017 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Gene3D G3DSA:3.40.50.2300 4 137 1.3E-18 T 06-07-2017 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 5.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 460 5.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 446 5.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 500 5.5E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00086 214 256 5.9E-4 T 06-07-2017 IPR001610 PAC motif APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SUPERFAMILY SSF55874 328 502 6.02E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Gene3D G3DSA:3.40.50.2300 519 639 3.6E-28 T 06-07-2017 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Gene3D G3DSA:3.30.565.10 324 504 1.6E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Gene3D G3DSA:3.30.450.20 138 254 1.8E-22 T 06-07-2017 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SUPERFAMILY SSF47384 266 338 2.35E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 337 4.2E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00387 380 503 1.1E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 500 1.8E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Gene3D G3DSA:1.10.287.130 267 323 2.8E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 149 262 5.6E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Pfam PF00072 Response regulator receiver domain 523 635 2.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Pfam PF00072 Response regulator receiver domain 8 116 1.9E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00388 271 338 6.9E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SUPERFAMILY SSF55785 129 254 2.79E-21 T 06-07-2017 IPR000014 PAS domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00091 145 213 1.0E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 Pfam PF13426 PAS domain 156 255 5.5E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00448 5 117 3.7E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SMART SM00448 521 635 1.4E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SUPERFAMILY SSF52172 520 639 1.99E-27 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28865 72ff0ab19972d67927721663394ad7bd 641 SUPERFAMILY SSF52172 5 138 2.56E-21 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 SUPERFAMILY SSF52743 119 405 4.32E-81 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 PRINTS PR00723 Subtilisin serine protease family (S8) signature 344 360 1.1E-18 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 PRINTS PR00723 Subtilisin serine protease family (S8) signature 174 187 1.1E-18 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 PRINTS PR00723 Subtilisin serine protease family (S8) signature 136 155 1.1E-18 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 345 355 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 PIRSF PIRSF037851 1 588 1.1E-230 T 06-07-2017 IPR017295 Peptidase S8A, subtilisin-related, cyanobacteria-1 APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 Gene3D G3DSA:3.40.50.200 95 405 2.7E-92 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS24370 f35dfb2394e689d534590b20341197ef 588 Pfam PF00082 Subtilase family 136 393 1.9E-46 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS06505 f34dff356bf6bb4a5708af8804201199 136 Gene3D G3DSA:3.40.50.2300 4 123 2.2E-39 T 06-07-2017 APT55_RS06505 f34dff356bf6bb4a5708af8804201199 136 SUPERFAMILY SSF52172 5 123 1.05E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06505 f34dff356bf6bb4a5708af8804201199 136 Pfam PF00072 Response regulator receiver domain 8 118 4.7E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS06505 f34dff356bf6bb4a5708af8804201199 136 SMART SM00448 6 118 2.3E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 SMART SM00382 376 568 3.0E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 SUPERFAMILY SSF90123 8 332 8.76E-64 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 Pfam PF00005 ABC transporter 367 516 2.1E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 SUPERFAMILY SSF52540 341 586 3.73E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 Pfam PF00664 ABC transporter transmembrane region 30 304 5.6E-38 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 Gene3D G3DSA:3.40.50.300 351 581 1.5E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 Gene3D G3DSA:1.20.1560.10 11 336 1.6E-64 T 06-07-2017 APT55_RS18195 d6bca31eb4de358e89babff32d2674eb 591 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 SUPERFAMILY SSF56784 1 218 9.36E-42 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 79 195 2.0E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 Gene3D G3DSA:1.10.150.240 37 87 9.2E-4 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 Gene3D G3DSA:3.40.50.1000 94 218 2.3E-32 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 Gene3D G3DSA:3.40.50.1000 1 16 2.3E-32 T 06-07-2017 IPR023214 HAD-like domain APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 50 160 8.5E-6 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS17070 57266f196b0fc379d9556a919154cd70 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 195 1.3E-26 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 SUPERFAMILY SSF47648 10 75 4.97E-13 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 Gene3D G3DSA:3.40.1030.10 83 343 1.3E-40 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 Gene3D G3DSA:1.20.970.10 12 67 9.4E-12 T 06-07-2017 APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 SUPERFAMILY SSF52418 80 343 4.58E-58 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 Pfam PF00591 Glycosyl transferase family, a/b domain 97 333 2.4E-17 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS23730 2346f246a03dfbd385a3c4c6d29bfdb4 353 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 67 1.8E-11 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 813 925 5.7E-17 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 743 925 2.2E-57 T 06-07-2017 IPR010976 Beta-phosphoglucomutase hydrolase APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:2.60.420.10 686 733 1.4E-8 T 06-07-2017 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:1.10.150.240 757 830 6.2E-28 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 302 698 8.1E-119 T 06-07-2017 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 SUPERFAMILY SSF48208 254 731 1.36E-112 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 SUPERFAMILY SSF74650 11 251 1.07E-66 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:2.70.98.40 12 252 2.3E-74 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:1.50.10.10 297 685 2.8E-134 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 SUPERFAMILY SSF56784 742 945 1.41E-49 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:3.40.50.1000 832 945 3.1E-37 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Gene3D G3DSA:3.40.50.1000 735 756 3.1E-37 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 TIGRFAM TIGR01990 bPGM: beta-phosphoglucomutase 743 927 1.1E-71 T 06-07-2017 IPR010972 Beta-phosphoglucomutase GO:0000287|GO:0005975|GO:0008801 KEGG: 00500+5.4.2.6|MetaCyc: PWY-2721|MetaCyc: PWY-2722|MetaCyc: PWY-6317|MetaCyc: PWY-7459 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Pfam PF13419 Haloacid dehalogenase-like hydrolase 746 925 7.9E-27 T 06-07-2017 IPR023214 HAD-like domain APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 18 250 1.6E-70 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS02415 13f56b59b40b8d9c6397f33ae8fbca3b 968 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 703 728 4.5E-6 T 06-07-2017 IPR005194 Glycoside hydrolase family 65, C-terminal APT55_RS19110 bfa1daf85fe2aedf6ce2213835794197 251 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 30 243 4.5E-42 T 06-07-2017 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT55_RS19110 bfa1daf85fe2aedf6ce2213835794197 251 Pfam PF02511 Thymidylate synthase complementing protein 32 239 4.2E-43 T 06-07-2017 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT55_RS19110 bfa1daf85fe2aedf6ce2213835794197 251 SUPERFAMILY SSF69796 29 245 1.44E-40 T 06-07-2017 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT55_RS17900 872a868b97bcf05e4c9346319c7aa780 228 Pfam PF05067 Manganese containing catalase 1 221 7.6E-51 T 06-07-2017 IPR007760 Manganese catalase APT55_RS17900 872a868b97bcf05e4c9346319c7aa780 228 Gene3D G3DSA:1.20.1260.10 1 179 1.1E-63 T 06-07-2017 IPR012347 Ferritin-related APT55_RS17900 872a868b97bcf05e4c9346319c7aa780 228 SUPERFAMILY SSF47240 1 218 1.98E-69 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS11585 c8d6f4141368c8e2785867e15e9c6081 206 SUPERFAMILY SSF52833 127 203 8.16E-12 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11585 c8d6f4141368c8e2785867e15e9c6081 206 Gene3D G3DSA:3.40.30.10 127 201 2.2E-12 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11585 c8d6f4141368c8e2785867e15e9c6081 206 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 127 203 1.1E-6 T 06-07-2017 APT55_RS01985 8ef873a36cb04c824ca5fed95463ae02 78 SUPERFAMILY SSF46689 3 68 6.81E-22 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS01985 8ef873a36cb04c824ca5fed95463ae02 78 Pfam PF04255 Protein of unknown function (DUF433) 9 64 1.1E-24 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS01985 8ef873a36cb04c824ca5fed95463ae02 78 Gene3D G3DSA:1.10.10.10 8 69 2.7E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 Gene3D G3DSA:3.90.1580.10 405 653 9.3E-75 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 Pfam PF00656 Caspase domain 3 152 8.2E-14 T 06-07-2017 APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 Pfam PF03781 Sulfatase-modifying factor enzyme 1 412 649 1.3E-58 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 SUPERFAMILY SSF52129 3 199 3.77E-16 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 SUPERFAMILY SSF56436 410 652 1.48E-77 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 Gene3D G3DSA:3.40.50.1460 1 81 3.4E-9 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS15645 2a61c14dd1ec5ed88083f11780ef63f2 656 ProSitePatterns PS00018 EF-hand calcium-binding domain. 198 210 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site APT55_RS22060 97ec194eac87fbb9f00e8ee4fdd7c9b3 310 Gene3D G3DSA:1.20.1260.10 1 205 4.3E-79 T 06-07-2017 IPR012347 Ferritin-related APT55_RS22060 97ec194eac87fbb9f00e8ee4fdd7c9b3 310 Gene3D G3DSA:3.30.1530.10 219 281 1.2E-24 T 06-07-2017 IPR027407 Manganese catalase, domain 2 APT55_RS22060 97ec194eac87fbb9f00e8ee4fdd7c9b3 310 SUPERFAMILY SSF47240 1 283 6.54E-97 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS22060 97ec194eac87fbb9f00e8ee4fdd7c9b3 310 Pfam PF05067 Manganese containing catalase 1 278 3.4E-102 T 06-07-2017 IPR007760 Manganese catalase APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 144 1.5E-46 T 06-07-2017 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 SUPERFAMILY SSF52080 7 146 4.58E-43 T 06-07-2017 IPR021131 Ribosomal protein L18e/L15P APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 141 - T 06-07-2017 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 145 6.1E-33 T 06-07-2017 IPR021131 Ribosomal protein L18e/L15P APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 147 19.069 T 06-07-2017 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 APT55_RS24790 c82d52be63d4c1ba44112007cc53f924 147 Gene3D G3DSA:3.100.10.10 32 147 1.7E-35 T 06-07-2017 APT55_RS01580 5cddcd208db9796a62c6fb62fe757b9d 173 Pfam PF13490 Putative zinc-finger 29 49 1.2E-4 T 06-07-2017 IPR027383 Putative zinc-finger APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 203 339 4.6E-7 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 44 181 3.6E-13 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 ProSitePatterns PS00934 Glyoxalase I signature 1. 206 227 - T 06-07-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 SUPERFAMILY SSF54593 37 278 2.38E-33 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 Gene3D G3DSA:3.10.180.10 197 344 5.9E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS28120 0a9866462844a2a03aa75d9836959d54 345 Gene3D G3DSA:3.10.180.10 34 183 6.2E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS06845 393f39fcd80631793012e98510cdecc6 137 SUPERFAMILY SSF88723 3 124 2.28E-13 T 06-07-2017 IPR029060 PIN domain-like APT55_RS06845 393f39fcd80631793012e98510cdecc6 137 Gene3D G3DSA:3.40.50.1010 2 121 5.1E-6 T 06-07-2017 IPR029060 PIN domain-like APT55_RS06845 393f39fcd80631793012e98510cdecc6 137 Pfam PF13470 PIN domain 3 117 1.5E-10 T 06-07-2017 IPR002716 PIN domain APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 240 331 1.8E-40 T 06-07-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 206 1.2E-63 T 06-07-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 SUPERFAMILY SSF51735 1 221 3.82E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 SUPERFAMILY SSF48179 239 333 3.4E-34 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Gene3D G3DSA:3.40.50.720 270 471 1.4E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Gene3D G3DSA:3.40.50.720 1 136 4.4E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Gene3D G3DSA:3.40.50.720 171 242 4.4E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 SUPERFAMILY SSF52413 341 466 3.01E-34 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 PIRSF PIRSF000124 1 471 2.4E-136 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 SMART SM00984 354 456 3.4E-38 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 355 455 1.3E-26 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 Gene3D G3DSA:1.20.5.100 243 269 6.5E-20 T 06-07-2017 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 168 452 6.0E-90 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT55_RS15525 517f7a68713f91e3cd256dadc36070ff 471 PIRSF PIRSF500134 1 471 1.8E-176 T 06-07-2017 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 APT55_RS21110 7ea535c26ced01c1a1310b7f49a3913a 130 PIRSF PIRSF018297 4 130 2.9E-44 T 06-07-2017 IPR006440 Death on curing protein GO:0016301 APT55_RS21110 7ea535c26ced01c1a1310b7f49a3913a 130 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 23 124 3.4E-24 T 06-07-2017 IPR006440 Death on curing protein GO:0016301 APT55_RS21110 7ea535c26ced01c1a1310b7f49a3913a 130 Gene3D G3DSA:1.10.3290.10 54 95 5.1E-6 T 06-07-2017 IPR003812 Fido domain APT55_RS21110 7ea535c26ced01c1a1310b7f49a3913a 130 Pfam PF02661 Fic/DOC family 7 88 5.1E-14 T 06-07-2017 IPR003812 Fido domain APT55_RS21110 7ea535c26ced01c1a1310b7f49a3913a 130 SUPERFAMILY SSF140931 38 101 2.88E-9 T 06-07-2017 IPR003812 Fido domain APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 17 33 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 SUPERFAMILY SSF110921 413 518 4.05E-21 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 Pfam PF08502 LeuA allosteric (dimerisation) domain 388 518 4.0E-38 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 SMART SM00917 388 519 7.3E-41 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 Pfam PF00682 HMGL-like 10 292 6.6E-101 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 207 220 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 7 528 43.597 T 06-07-2017 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 9 516 4.8E-235 T 06-07-2017 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 Gene3D G3DSA:3.20.20.70 4 366 7.8E-149 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS24680 4255d0fb630a25b2e999ba4224221882 537 SUPERFAMILY SSF51569 7 310 1.23E-96 T 06-07-2017 APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 1.6E-13 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 Gene3D G3DSA:1.10.10.10 9 96 2.0E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 SMART SM00418 19 97 1.4E-18 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 SUPERFAMILY SSF46785 15 110 7.5E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 7.0E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 7.0E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS14310 ab7ece42f4d0a91f8ab30af31d92919e 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 7.0E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 Pfam PF00361 Proton-conducting membrane transporter 133 413 2.6E-65 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 Hamap MF_00491 NAD(P)H-quinone oxidoreductase chain 4 [ndhD]. 3 533 38.703 T 06-07-2017 IPR022997 NADH-quinone oxidoreductase chain 4 GO:0016655|GO:0055114 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 4.2E-37 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 4.2E-37 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 4.2E-37 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 4.2E-37 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 240 264 4.2E-37 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS02165 f5e225bdce6375f8e328f4093eae8342 567 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 9 529 1.5E-170 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 SMART SM00382 388 580 3.7E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 SUPERFAMILY SSF90123 28 327 7.06E-21 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 Gene3D G3DSA:1.20.1560.10 29 341 3.3E-13 T 06-07-2017 APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 SUPERFAMILY SSF52540 359 604 4.86E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 Gene3D G3DSA:3.40.50.300 362 597 4.7E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 ProSitePatterns PS00211 ABC transporters family signature. 505 519 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS24420 ff2aa52370841dd1e506146b0c107bce 609 Pfam PF00005 ABC transporter 379 534 9.3E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS24055 4491fdd02de262aa945f3a8c8971ec99 442 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 159 433 7.5E-91 T 06-07-2017 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 APT55_RS24055 4491fdd02de262aa945f3a8c8971ec99 442 Pfam PF01458 Uncharacterized protein family (UPF0051) 192 416 1.5E-70 T 06-07-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 APT55_RS24055 4491fdd02de262aa945f3a8c8971ec99 442 SUPERFAMILY SSF101960 35 438 1.7E-105 T 06-07-2017 APT55_RS06235 cc3e83b73698170a519b846529a2e227 148 SUPERFAMILY SSF51261 5 144 4.81E-47 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS06235 cc3e83b73698170a519b846529a2e227 148 Pfam PF01551 Peptidase family M23 44 131 2.0E-28 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS06235 cc3e83b73698170a519b846529a2e227 148 Gene3D G3DSA:2.70.70.10 13 147 8.6E-43 T 06-07-2017 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 Gene3D G3DSA:2.130.10.10 379 630 2.4E-32 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 Pfam PF00069 Protein kinase domain 12 215 1.6E-26 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SUPERFAMILY SSF50978 378 631 4.85E-33 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 Pfam PF13360 PQQ-like domain 369 557 1.8E-6 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SUPERFAMILY SSF56112 6 331 2.19E-42 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 41 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SMART SM00320 389 427 55.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SMART SM00320 430 467 1.6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SMART SM00320 554 591 18.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SMART SM00320 513 551 7.7E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 SMART SM00220 10 272 5.5E-19 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 Gene3D G3DSA:1.10.510.10 85 263 1.9E-25 T 06-07-2017 APT55_RS30560 45b59d77f8cc598faf06a591a5947014 634 Gene3D G3DSA:3.30.200.20 2 84 6.2E-11 T 06-07-2017 APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 PIRSF PIRSF006118 3 172 1.3E-62 T 06-07-2017 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 16 165 5.4E-51 T 06-07-2017 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 SUPERFAMILY SSF56784 12 164 6.4E-40 T 06-07-2017 IPR023214 HAD-like domain APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 Pfam PF08282 haloacid dehalogenase-like hydrolase 91 153 2.5E-8 T 06-07-2017 IPR023214 HAD-like domain APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 17 131 2.9E-14 T 06-07-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APT55_RS27815 2f1e3e80e505f7597d58e691dab9adf0 173 Gene3D G3DSA:3.40.50.1000 9 164 6.2E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS05830 2126046b5414bc90af9d658fc11befcd 111 SUPERFAMILY SSF143847 1 111 2.09E-39 T 06-07-2017 IPR014968 XisI protein APT55_RS05830 2126046b5414bc90af9d658fc11befcd 111 Gene3D G3DSA:3.30.310.110 1 111 1.7E-42 T 06-07-2017 IPR014968 XisI protein APT55_RS05830 2126046b5414bc90af9d658fc11befcd 111 Pfam PF08869 XisI protein 1 110 6.6E-43 T 06-07-2017 IPR014968 XisI protein APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 227 7.3E-56 T 06-07-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 Gene3D G3DSA:3.20.20.70 2 231 7.1E-81 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 SUPERFAMILY SSF51366 2 231 1.91E-68 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 SMART SM00934 4 227 3.3E-86 T 06-07-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 2 232 38.4 T 06-07-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 4 227 8.2E-44 T 06-07-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS04075 cabcef45db098a157c7d5b8a4e62ff48 237 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 55 68 - T 06-07-2017 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 Gene3D G3DSA:1.25.40.10 46 142 3.5E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 Gene3D G3DSA:1.25.40.10 143 198 1.5E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 SMART SM00028 85 118 150.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 SMART SM00028 127 160 0.0034 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 SUPERFAMILY SSF48452 46 188 2.86E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 Pfam PF13424 Tetratricopeptide repeat 129 191 3.3E-8 T 06-07-2017 APT55_RS24910 2d05dac759c309fb0ec8ae7d88937614 206 Pfam PF13181 Tetratricopeptide repeat 86 114 0.0014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS16205 818ff96ffe9c61af22760f67e0ad6750 288 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 4 266 2.3E-24 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS16205 818ff96ffe9c61af22760f67e0ad6750 288 Pfam PF14261 Domain of unknown function (DUF4351) 226 284 3.7E-18 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS16205 818ff96ffe9c61af22760f67e0ad6750 288 Pfam PF11103 Protein of unknown function (DUF2887) 3 203 1.5E-73 T 06-07-2017 IPR022573 Protein of unknown function DUF2887 APT55_RS01485 d5141615768d5e10021f105b7111b9b4 254 Gene3D G3DSA:1.20.58.190 92 137 6.7E-4 T 06-07-2017 IPR016068 Translin, N-terminal GO:0043565 Reactome: R-HSA-426486 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Gene3D G3DSA:3.30.565.10 533 700 7.3E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF03707 Bacterial signalling protein N terminal repeat 117 167 2.1E-16 T 06-07-2017 IPR005330 MHYT domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF03707 Bacterial signalling protein N terminal repeat 54 109 7.2E-15 T 06-07-2017 IPR005330 MHYT domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF03707 Bacterial signalling protein N terminal repeat 185 247 4.5E-8 T 06-07-2017 IPR005330 MHYT domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Gene3D G3DSA:3.30.450.20 281 404 8.9E-9 T 06-07-2017 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SUPERFAMILY SSF55874 522 703 5.89E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SUPERFAMILY SSF55785 299 411 1.3E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SMART SM00387 580 701 7.5E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF12860 PAS fold 299 408 3.5E-8 T 06-07-2017 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Gene3D G3DSA:1.10.287.130 502 531 3.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Gene3D G3DSA:1.10.287.130 435 466 3.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF00512 His Kinase A (phospho-acceptor) domain 440 534 7.1E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 584 698 3.5E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 647 657 3.4E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 678 3.4E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 643 3.4E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 698 3.4E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SUPERFAMILY SSF47384 429 475 2.55E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SUPERFAMILY SSF47384 503 535 2.55E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19370 eb4686e5d7812a61675a6862e5717b96 709 SMART SM00388 440 535 2.6E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00850 b9305332d8cef4d1d622d328fbdeece4 392 Pfam PF04116 Fatty acid hydroxylase superfamily 19 167 3.0E-7 T 06-07-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 APT55_RS00850 b9305332d8cef4d1d622d328fbdeece4 392 SUPERFAMILY SSF51735 159 311 6.27E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00850 b9305332d8cef4d1d622d328fbdeece4 392 Pfam PF00106 short chain dehydrogenase 174 311 3.0E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00850 b9305332d8cef4d1d622d328fbdeece4 392 Gene3D G3DSA:3.40.50.720 171 316 2.4E-18 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 Gene3D G3DSA:1.20.1050.10 91 113 9.8E-17 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 Gene3D G3DSA:1.20.1050.10 149 212 9.8E-17 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 Pfam PF13410 Glutathione S-transferase, C-terminal domain 157 215 1.0E-5 T 06-07-2017 APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 78 2.3E-21 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 SUPERFAMILY SSF47616 69 110 3.14E-12 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 SUPERFAMILY SSF47616 155 202 3.14E-12 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 SUPERFAMILY SSF52833 1 101 8.27E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS23340 d2d821cf1ddb60de70f2b31051d1697d 265 Gene3D G3DSA:3.40.30.10 1 90 6.2E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 Pfam PF12697 Alpha/beta hydrolase family 22 240 2.4E-13 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 198 212 1.4E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.4E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 1.4E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 Gene3D G3DSA:3.40.50.1820 19 248 4.6E-26 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14940 0e862592ac821ac8b9aad919fa2069c4 259 SUPERFAMILY SSF53474 16 257 2.45E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS05020 76ab002d9c22d7e6719563ef2c1640d1 446 SUPERFAMILY SSF52540 108 350 2.16E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05020 76ab002d9c22d7e6719563ef2c1640d1 446 Pfam PF14516 AAA-like domain 108 441 1.1E-133 T 06-07-2017 APT55_RS05020 76ab002d9c22d7e6719563ef2c1640d1 446 Gene3D G3DSA:1.10.260.40 42 96 9.2E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS05020 76ab002d9c22d7e6719563ef2c1640d1 446 Gene3D G3DSA:3.40.50.300 132 267 6.6E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14875 0abee505de9ca079c4d77da6c835a0e8 83 Pfam PF05154 TM2 domain 10 61 4.7E-16 T 06-07-2017 IPR007829 TM2 domain APT55_RS00020 f1d2a867280f08d3de8ffda1d597e6bc 96 Pfam PF01909 Nucleotidyltransferase domain 18 89 2.2E-12 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS00020 f1d2a867280f08d3de8ffda1d597e6bc 96 SUPERFAMILY SSF81301 1 93 1.11E-21 T 06-07-2017 APT55_RS00020 f1d2a867280f08d3de8ffda1d597e6bc 96 Gene3D G3DSA:3.30.460.10 13 94 1.7E-24 T 06-07-2017 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 Pfam PF13428 Tetratricopeptide repeat 480 519 2.5E-5 T 06-07-2017 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 SUPERFAMILY SSF52540 9 270 1.77E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 SMART SM00028 440 473 14.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 SMART SM00028 479 512 0.021 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 Gene3D G3DSA:1.25.40.10 400 567 7.0E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 SUPERFAMILY SSF48452 401 526 3.8E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 Gene3D G3DSA:3.40.50.300 10 175 2.1E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23380 bc23f16b6df52d515aca29a7e51069e9 643 Pfam PF13191 AAA ATPase domain 22 172 4.5E-9 T 06-07-2017 APT55_RS23440 61d26d4b80e45d4fb703c1b6e5e7f50e 166 SUPERFAMILY SSF55729 1 152 1.72E-30 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS23440 61d26d4b80e45d4fb703c1b6e5e7f50e 166 Pfam PF13527 Acetyltransferase (GNAT) domain 3 127 1.9E-10 T 06-07-2017 APT55_RS23440 61d26d4b80e45d4fb703c1b6e5e7f50e 166 Gene3D G3DSA:3.40.630.30 1 136 6.9E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS08610 8455aea57f810be22d31a9b0e1fbbf90 140 Pfam PF00430 ATP synthase B/B' CF(0) 7 137 6.2E-24 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT55_RS08610 8455aea57f810be22d31a9b0e1fbbf90 140 Hamap MF_01399 ATP synthase subunit b' [atpG]. 1 138 23.458 T 06-07-2017 APT55_RS08610 8455aea57f810be22d31a9b0e1fbbf90 140 Hamap MF_01398 ATP synthase subunit b [atpF]. 2 140 8.57 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT55_RS11705 d21d43c9d34a5ce45d3bde75913dd48e 82 SMART SM00899 9 80 1.0E-8 T 06-07-2017 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 APT55_RS11705 d21d43c9d34a5ce45d3bde75913dd48e 82 Gene3D G3DSA:2.30.30.90 35 78 4.6E-4 T 06-07-2017 APT55_RS11705 d21d43c9d34a5ce45d3bde75913dd48e 82 Pfam PF04023 FeoA domain 11 79 1.2E-10 T 06-07-2017 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 APT55_RS11705 d21d43c9d34a5ce45d3bde75913dd48e 82 SUPERFAMILY SSF50037 12 79 5.04E-7 T 06-07-2017 IPR008988 Transcriptional repressor, C-terminal APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 Gene3D G3DSA:3.10.20.30 1 109 1.7E-34 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 SUPERFAMILY SSF54292 2 109 4.33E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 114 5.5E-34 T 06-07-2017 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 SUPERFAMILY SSF46548 110 239 1.36E-30 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 9 233 1.3E-84 T 06-07-2017 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 Pfam PF13183 4Fe-4S dicluster domain 151 223 4.1E-10 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 Gene3D G3DSA:1.10.1060.10 110 240 3.7E-33 T 06-07-2017 APT55_RS07475 ca6ca91fdf0820b682bf740b32fbf6af 329 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 209 220 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS16910 e727b4702b301306783879c5be79b7e9 1050 Pfam PF08707 Primase C terminal 2 (PriCT-2) 344 412 4.0E-5 T 06-07-2017 IPR014819 Primase, C-terminal 2 GO:0016817 APT55_RS16910 e727b4702b301306783879c5be79b7e9 1050 Pfam PF05272 Virulence-associated protein E 657 837 3.8E-51 T 06-07-2017 IPR007936 Virulence-associated E APT55_RS16910 e727b4702b301306783879c5be79b7e9 1050 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 139 245 9.5E-6 T 06-07-2017 IPR015330 DNA primase/polymerase, bifunctional, N-terminal APT55_RS27120 a75a0260096c6ad0d5923bde7cfed2d3 206 Pfam PF02570 Precorrin-8X methylmutase 9 202 8.1E-73 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS27120 a75a0260096c6ad0d5923bde7cfed2d3 206 SUPERFAMILY SSF63965 2 201 1.31E-72 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS27120 a75a0260096c6ad0d5923bde7cfed2d3 206 Gene3D G3DSA:3.40.50.10230 2 202 2.4E-80 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 PIRSF PIRSF000239 1 210 1.2E-76 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 158 197 2.4E-10 T 06-07-2017 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 SUPERFAMILY SSF52833 3 210 1.08E-69 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 Gene3D G3DSA:3.40.30.10 4 159 3.7E-61 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 Pfam PF00578 AhpC/TSA family 6 136 2.0E-30 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS04745 b0e9d811857709aca58be9ff51321cd5 213 Gene3D G3DSA:3.30.1020.10 160 212 1.7E-27 T 06-07-2017 APT55_RS29865 810a26a6bd60b834bce5c495da136ce2 352 SMART SM00220 35 299 9.6E-8 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS29865 810a26a6bd60b834bce5c495da136ce2 352 Gene3D G3DSA:3.30.200.20 11 141 1.9E-5 T 06-07-2017 APT55_RS29865 810a26a6bd60b834bce5c495da136ce2 352 Gene3D G3DSA:1.10.510.10 142 316 2.9E-24 T 06-07-2017 APT55_RS29865 810a26a6bd60b834bce5c495da136ce2 352 SUPERFAMILY SSF56112 31 301 4.86E-35 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS29865 810a26a6bd60b834bce5c495da136ce2 352 Pfam PF00069 Protein kinase domain 80 259 7.9E-20 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS06085 3ffd1c7e563d5d63fe86f41432aacca3 166 Gene3D G3DSA:3.30.70.270 35 145 8.7E-7 T 06-07-2017 APT55_RS06085 3ffd1c7e563d5d63fe86f41432aacca3 166 Pfam PF00990 Diguanylate cyclase, GGDEF domain 34 118 2.2E-5 T 06-07-2017 IPR000160 GGDEF domain APT55_RS06085 3ffd1c7e563d5d63fe86f41432aacca3 166 SUPERFAMILY SSF55073 46 157 3.06E-6 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 SUPERFAMILY SSF102114 164 374 2.49E-29 T 06-07-2017 APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 Gene3D G3DSA:3.80.30.20 167 367 4.4E-36 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 Pfam PF04055 Radical SAM superfamily 171 329 6.1E-19 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 SMART SM00729 166 380 1.2E-18 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 Pfam PF13282 Domain of unknown function (DUF4070) 358 499 3.7E-49 T 06-07-2017 IPR025274 Domain of unknown function DUF4070 APT55_RS04945 cd2309f063d86d9d3dee1c1858043076 523 Pfam PF02310 B12 binding domain 30 125 4.0E-9 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS26970 61a9eb23d4ddcd4dca1c55943697ba66 52 PIRSF PIRSF037205 2 52 6.9E-26 T 06-07-2017 IPR017136 Uncharacterised conserved protein UCP037205 APT55_RS26970 61a9eb23d4ddcd4dca1c55943697ba66 52 Pfam PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 7 44 5.4E-23 T 06-07-2017 IPR017136 Uncharacterised conserved protein UCP037205 APT55_RS16560 d710c58fdd84ce773662d42b0cc60a77 213 SUPERFAMILY SSF53098 10 207 6.37E-59 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS16560 d710c58fdd84ce773662d42b0cc60a77 213 Pfam PF01351 Ribonuclease HII 22 198 2.1E-31 T 06-07-2017 IPR024567 Ribonuclease HII/HIII domain APT55_RS16560 d710c58fdd84ce773662d42b0cc60a77 213 Gene3D G3DSA:3.30.420.10 21 161 5.7E-37 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS16560 d710c58fdd84ce773662d42b0cc60a77 213 Hamap MF_00052_B Ribonuclease HII [rnhB]. 20 200 31.842 T 06-07-2017 IPR022898 Ribonuclease HII GO:0004523 APT55_RS23225 668c7b4102662750dd499d6a3e8f4965 178 Gene3D G3DSA:1.25.40.10 5 75 1.1E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23225 668c7b4102662750dd499d6a3e8f4965 178 SUPERFAMILY SSF48452 9 76 1.66E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10205 f2690646357b8a3696549e9a03d5579a 200 Gene3D G3DSA:3.40.50.150 27 198 1.0E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10205 f2690646357b8a3696549e9a03d5579a 200 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 25 146 7.7E-41 T 06-07-2017 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS10205 f2690646357b8a3696549e9a03d5579a 200 SUPERFAMILY SSF53335 26 157 2.25E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10205 f2690646357b8a3696549e9a03d5579a 200 Pfam PF13847 Methyltransferase domain 42 157 1.4E-11 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 229 336 4.8E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 SMART SM00387 227 339 1.2E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 SUPERFAMILY SSF55874 174 337 5.11E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 336 3.5E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 264 278 3.5E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 292 3.5E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 299 317 3.5E-21 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 Gene3D G3DSA:1.10.287.130 109 171 2.6E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 Pfam PF00512 His Kinase A (phospho-acceptor) domain 118 183 7.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 SUPERFAMILY SSF47384 100 183 1.94E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 Gene3D G3DSA:3.30.565.10 172 339 5.0E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27090 6f393c54a3975d54ea85ec2309440644 342 SMART SM00388 117 184 7.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21410 754e9b844248250d7862e622c6184ac6 270 SUPERFAMILY SSF56317 1 267 2.88E-77 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21410 754e9b844248250d7862e622c6184ac6 270 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 152 172 - T 06-07-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site APT55_RS21410 754e9b844248250d7862e622c6184ac6 270 Pfam PF00795 Carbon-nitrogen hydrolase 5 259 2.6E-67 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21410 754e9b844248250d7862e622c6184ac6 270 Gene3D G3DSA:3.60.110.10 2 267 2.6E-78 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS20810 04d7a4caaa433b924290413b025ae45a 495 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 387 472 2.4E-9 T 06-07-2017 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain APT55_RS20810 04d7a4caaa433b924290413b025ae45a 495 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 147 293 2.8E-44 T 06-07-2017 IPR004474 Cell envelope-related transcriptional attenuator domain APT55_RS20810 04d7a4caaa433b924290413b025ae45a 495 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 146 293 3.7E-46 T 06-07-2017 IPR004474 Cell envelope-related transcriptional attenuator domain APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 Gene3D G3DSA:3.10.20.70 3 106 1.0E-38 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 SMART SM01230 103 381 7.0E-152 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 Gene3D G3DSA:3.30.590.10 107 451 1.3E-136 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 06-07-2017 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 2.0E-28 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 471 6.6E-205 T 06-07-2017 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 Pfam PF00120 Glutamine synthetase, catalytic domain 104 469 1.0E-133 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 SUPERFAMILY SSF54368 3 102 2.88E-34 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 260 275 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT55_RS20865 2c78da33e1d813c55b70b2e303306879 472 SUPERFAMILY SSF55931 104 472 2.45E-137 T 06-07-2017 APT55_RS21450 fda610b72d6109a0ff8d941470ddc900 77 Pfam PF06305 Protein of unknown function (DUF1049) 26 60 4.0E-6 T 06-07-2017 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 APT55_RS17755 dcfeb9540a680365814b1dbd929b9013 169 SUPERFAMILY SSF53182 1 155 9.29E-30 T 06-07-2017 APT55_RS17755 dcfeb9540a680365814b1dbd929b9013 169 Gene3D G3DSA:3.40.630.20 89 145 6.4E-15 T 06-07-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like APT55_RS17755 dcfeb9540a680365814b1dbd929b9013 169 Gene3D G3DSA:3.40.630.20 2 81 3.5E-6 T 06-07-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like APT55_RS17755 dcfeb9540a680365814b1dbd929b9013 169 Pfam PF01470 Pyroglutamyl peptidase 101 145 1.3E-7 T 06-07-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like APT55_RS12625 4b784bffae994af4bb54894fcf2bd252 434 Pfam PF01882 Protein of unknown function DUF58 189 274 3.0E-21 T 06-07-2017 IPR002881 Domain of unknown function DUF58 APT55_RS12625 4b784bffae994af4bb54894fcf2bd252 434 SUPERFAMILY SSF53300 231 359 1.8E-6 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS15075 e1880da6cea174ee066fe957c5d954fc 355 SUPERFAMILY SSF53756 2 354 1.1E-55 T 06-07-2017 APT55_RS15075 e1880da6cea174ee066fe957c5d954fc 355 Pfam PF00534 Glycosyl transferases group 1 181 326 9.3E-29 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15075 e1880da6cea174ee066fe957c5d954fc 355 Gene3D G3DSA:3.40.50.2000 180 326 2.0E-26 T 06-07-2017 APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 Pfam PF00082 Subtilase family 229 528 2.4E-33 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 SUPERFAMILY SSF49785 584 695 7.23E-21 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 275 285 - T 06-07-2017 IPR022398 Peptidase S8, subtilisin, His-active site APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 Gene3D G3DSA:2.60.120.260 597 695 1.1E-14 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 PRINTS PR00723 Subtilisin serine protease family (S8) signature 228 247 3.9E-13 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 PRINTS PR00723 Subtilisin serine protease family (S8) signature 271 284 3.9E-13 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 PRINTS PR00723 Subtilisin serine protease family (S8) signature 486 502 3.9E-13 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 SUPERFAMILY SSF52743 218 564 1.11E-63 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 Gene3D G3DSA:3.40.50.200 185 564 3.5E-78 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 Pfam PF01483 Proprotein convertase P-domain 608 694 4.2E-18 T 06-07-2017 IPR002884 Proprotein convertase, P GO:0004252|GO:0006508 APT55_RS00915 04b736af6d369bb6cf093612b282f054 697 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 487 497 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 SUPERFAMILY SSF54862 42 148 6.14E-27 T 06-07-2017 APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 Pfam PF13237 4Fe-4S dicluster domain 58 115 2.9E-9 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 TIGRFAM TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit 1 182 1.0E-105 T 06-07-2017 IPR004497 NADH-plastoquinone oxidoreductase, subunit I GO:0008137|GO:0055114 APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 25 140 3.1E-42 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 Gene3D G3DSA:3.30.70.20 28 123 1.4E-20 T 06-07-2017 APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 16 149 23.985 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS23250 26732e3f984ec1b17e824157a5f2a68f 194 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 104 115 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS03570 14f907f2cd16407936018843d033a0e4 301 SUPERFAMILY SSF56235 5 286 2.83E-81 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS03570 14f907f2cd16407936018843d033a0e4 301 Pfam PF01112 Asparaginase 6 283 5.1E-81 T 06-07-2017 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 APT55_RS20205 ea124ede2e015044b8da853c7198e753 453 Gene3D G3DSA:1.10.101.10 60 117 7.9E-12 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS20205 ea124ede2e015044b8da853c7198e753 453 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 142 443 2.2E-66 T 06-07-2017 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA APT55_RS20205 ea124ede2e015044b8da853c7198e753 453 Pfam PF01471 Putative peptidoglycan binding domain 60 110 9.3E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS20205 ea124ede2e015044b8da853c7198e753 453 TIGRFAM TIGR00534 OpcA: glucose-6-phosphate dehydrogenase assembly protein OpcA 10 428 1.1E-92 T 06-07-2017 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA APT55_RS20205 ea124ede2e015044b8da853c7198e753 453 SUPERFAMILY SSF47090 60 115 5.65E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 SUPERFAMILY SSF46609 1 89 2.75E-37 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 4.0E-42 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 Gene3D G3DSA:1.10.287.990 20 89 3.8E-32 T 06-07-2017 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 06-07-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PIRSF PIRSF000349 1 206 1.2E-87 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 SUPERFAMILY SSF54719 92 203 2.1E-46 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 1.1E-31 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.4E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.4E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 1.4E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 1.4E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS08405 86aada7d91c4692e6fef2269a2c5f07f 206 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 1.4E-25 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS03020 72ddbf4002ac197ee8ed072ffc4e8851 171 PRINTS PR01837 MgtC/SapB protein signature 68 90 1.1E-35 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS03020 72ddbf4002ac197ee8ed072ffc4e8851 171 PRINTS PR01837 MgtC/SapB protein signature 18 37 1.1E-35 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS03020 72ddbf4002ac197ee8ed072ffc4e8851 171 PRINTS PR01837 MgtC/SapB protein signature 101 125 1.1E-35 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS03020 72ddbf4002ac197ee8ed072ffc4e8851 171 PRINTS PR01837 MgtC/SapB protein signature 37 55 1.1E-35 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS03020 72ddbf4002ac197ee8ed072ffc4e8851 171 Pfam PF02308 MgtC family 15 147 1.9E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT55_RS29900 57d2dd3cad9ea85f2538839461b523c1 296 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 6 73 2.3E-14 T 06-07-2017 IPR022385 Rhs repeat-associated core GO:0097264 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 SMART SM00862 145 221 3.4E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 Pfam PF00072 Response regulator receiver domain 3 113 1.4E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 2.2E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 SMART SM00448 1 112 2.1E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 Gene3D G3DSA:3.40.50.2300 1 120 1.3E-37 T 06-07-2017 APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 SUPERFAMILY SSF52172 1 177 8.5E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02080 62ffe3396afd425061f8b0c9e264990e 233 Gene3D G3DSA:1.10.10.10 124 224 9.4E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26690 5fa1b74cb7d7d69f45cc208e514e5452 221 Pfam PF13628 Domain of unknown function (DUF4142) 65 200 3.3E-34 T 06-07-2017 IPR025419 Domain of unknown function DUF4142 APT55_RS26690 5fa1b74cb7d7d69f45cc208e514e5452 221 Gene3D G3DSA:1.20.1260.10 59 154 1.4E-5 T 06-07-2017 IPR012347 Ferritin-related APT55_RS27205 b09e48b062bd8692a2c7867e01930c6e 105 SUPERFAMILY SSF143011 1 90 2.75E-12 T 06-07-2017 APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 SUPERFAMILY SSF54106 234 279 2.75E-9 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Gene3D G3DSA:3.10.350.10 234 280 1.3E-13 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Gene3D G3DSA:3.10.350.10 97 143 1.3E-14 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 SUPERFAMILY SSF51261 426 606 2.2E-56 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Pfam PF01551 Peptidase family M23 506 602 1.3E-33 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Pfam PF01476 LysM domain 236 279 1.3E-9 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Pfam PF01476 LysM domain 100 143 1.9E-12 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 SUPERFAMILY SSF54106 97 144 5.23E-10 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 Gene3D G3DSA:2.70.70.10 485 607 3.0E-46 T 06-07-2017 APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 SMART SM00257 235 279 1.3E-13 T 06-07-2017 IPR018392 LysM domain APT55_RS13595 7bdd05af3190f69bd39178f22b7f02ce 611 SMART SM00257 99 143 8.0E-15 T 06-07-2017 IPR018392 LysM domain APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 SUPERFAMILY SSF52540 246 477 2.52E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 SMART SM00382 30 200 0.22 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 SMART SM00382 266 430 0.006 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 PIRSF PIRSF039117 1 484 4.2E-136 T 06-07-2017 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 Gene3D G3DSA:3.40.50.300 8 235 6.2E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 Gene3D G3DSA:3.40.50.300 242 481 3.9E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 Pfam PF06745 KaiC 250 468 1.9E-36 T 06-07-2017 IPR014774 KaiC-like domain APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 Pfam PF06745 KaiC 15 234 2.5E-36 T 06-07-2017 IPR014774 KaiC-like domain APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 SUPERFAMILY SSF52540 11 238 1.05E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 PRINTS PR01874 DNA repair protein radA signature 64 81 3.0E-8 T 06-07-2017 APT55_RS08990 176a75a31ad2db6b802dd2d4737dbdb1 486 PRINTS PR01874 DNA repair protein radA signature 22 50 3.0E-8 T 06-07-2017 APT55_RS30355 1243413b4ec490a71bf44e482248753c 274 SUPERFAMILY SSF53335 13 226 1.96E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30355 1243413b4ec490a71bf44e482248753c 274 Pfam PF01209 ubiE/COQ5 methyltransferase family 31 156 6.8E-23 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT55_RS30355 1243413b4ec490a71bf44e482248753c 274 Gene3D G3DSA:3.40.50.150 11 262 6.5E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11090 880175e8872cf7c68aa9711aeee35938 140 Gene3D G3DSA:3.40.50.2300 3 126 3.8E-33 T 06-07-2017 APT55_RS11090 880175e8872cf7c68aa9711aeee35938 140 SUPERFAMILY SSF52172 4 128 1.38E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS11090 880175e8872cf7c68aa9711aeee35938 140 SMART SM00448 5 122 6.5E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11090 880175e8872cf7c68aa9711aeee35938 140 Pfam PF00072 Response regulator receiver domain 7 122 1.7E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13900 b9a24e867e8e976ac832ad76004c0fb8 204 Pfam PF13676 TIR domain 5 115 1.3E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS13900 b9a24e867e8e976ac832ad76004c0fb8 204 Gene3D G3DSA:3.40.50.10140 5 127 1.0E-10 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS13900 b9a24e867e8e976ac832ad76004c0fb8 204 SMART SM00255 2 149 8.9E-11 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS13900 b9a24e867e8e976ac832ad76004c0fb8 204 SUPERFAMILY SSF52200 4 141 9.16E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 SUPERFAMILY SSF47323 343 472 9.42E-30 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 473 5.7E-171 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 Gene3D G3DSA:3.40.50.620 20 310 1.0E-108 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 Gene3D G3DSA:1.20.120.640 312 411 3.2E-16 T 06-07-2017 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 SUPERFAMILY SSF52374 5 319 3.22E-97 T 06-07-2017 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 1.2E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 225 246 1.2E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.2E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 194 212 1.2E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 318 5.4E-130 T 06-07-2017 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 474 37.828 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 Pfam PF09190 DALR domain 351 418 4.3E-15 T 06-07-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS12815 165b559bf9415bca772dcd8bc039d4c3 474 SMART SM00840 351 421 2.0E-17 T 06-07-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Pfam PF04983 RNA polymerase Rpb1, domain 3 9 64 1.8E-8 T 06-07-2017 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 SUPERFAMILY SSF64484 11 352 6.41E-200 T 06-07-2017 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 SUPERFAMILY SSF64484 989 1236 6.41E-200 T 06-07-2017 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Pfam PF05000 RNA polymerase Rpb1, domain 4 93 162 1.3E-15 T 06-07-2017 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Gene3D G3DSA:2.40.50.100 389 430 1.3E-5 T 06-07-2017 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Gene3D G3DSA:2.40.50.100 1013 1067 3.0E-5 T 06-07-2017 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 TIGRFAM TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit 10 1239 0.0 T 06-07-2017 IPR012756 DNA-directed RNA polymerase, subunit beta'' GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Pfam PF04998 RNA polymerase Rpb1, domain 5 174 367 1.4E-43 T 06-07-2017 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Pfam PF04998 RNA polymerase Rpb1, domain 5 1094 1186 2.1E-10 T 06-07-2017 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS00185 57c73e1602248cdc6afc27b6418fdc1f 1321 Hamap MF_01324 DNA-directed RNA polymerase subunit beta' [rpoC2]. 8 1289 11.76 T 06-07-2017 IPR012756 DNA-directed RNA polymerase, subunit beta'' GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 2 377 69.445 T 06-07-2017 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 Pfam PF00296 Luciferase-like monooxygenase 2 324 1.8E-85 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 1.8E-185 T 06-07-2017 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 SUPERFAMILY SSF51679 4 347 5.76E-94 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 Gene3D G3DSA:3.20.20.30 285 348 7.9E-99 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS03030 677ceb581dfd1fd624fddb92d1b3ddc3 384 Gene3D G3DSA:3.20.20.30 3 251 7.9E-99 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Gene3D G3DSA:3.10.150.10 363 481 5.1E-12 T 06-07-2017 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 SMART SM00480 107 478 1.5E-9 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 94 212 1.1E-9 T 06-07-2017 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Gene3D G3DSA:3.10.150.10 211 354 1.2E-11 T 06-07-2017 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 363 467 9.1E-6 T 06-07-2017 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 SUPERFAMILY SSF55979 94 212 7.3E-6 T 06-07-2017 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Gene3D G3DSA:3.10.150.10 94 210 4.4E-11 T 06-07-2017 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 SUPERFAMILY SSF55979 362 481 3.72E-8 T 06-07-2017 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 Pfam PF02767 DNA polymerase III beta subunit, central domain 223 350 6.4E-7 T 06-07-2017 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS30015 fa3c80398e5461c0d29e482baeaa2ed4 482 SUPERFAMILY SSF55979 223 355 1.82E-5 T 06-07-2017 APT55_RS16890 904f086ce3abd1cb2cb572e64763cd99 156 Gene3D G3DSA:1.10.287.110 110 143 1.8E-8 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16890 904f086ce3abd1cb2cb572e64763cd99 156 SUPERFAMILY SSF46565 110 143 3.01E-8 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16890 904f086ce3abd1cb2cb572e64763cd99 156 SMART SM00271 102 149 0.0058 T 06-07-2017 IPR001623 DnaJ domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SMART SM00732 321 419 2.0E-30 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SUPERFAMILY SSF47781 555 626 5.11E-16 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SUPERFAMILY SSF158832 2 316 6.28E-103 T 06-07-2017 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:3.30.420.140 322 445 1.0E-48 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Pfam PF00575 S1 RNA binding domain 643 714 1.5E-21 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:1.10.10.650 2 108 1.0E-41 T 06-07-2017 IPR023319 Tex-like protein, HTH domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SUPERFAMILY SSF53098 317 464 3.64E-47 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:1.10.150.310 494 624 1.4E-45 T 06-07-2017 IPR023097 Tex RuvX-like domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SUPERFAMILY SSF50249 632 718 2.76E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:2.40.50.140 629 715 1.2E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:1.10.3500.10 109 317 7.4E-87 T 06-07-2017 IPR023323 Tex-like domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Gene3D G3DSA:1.10.3500.10 446 493 7.4E-87 T 06-07-2017 IPR023323 Tex-like domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Pfam PF16921 Tex protein YqgF-like domain 322 446 1.7E-50 T 06-07-2017 IPR032639 Tex protein, YqgF-like domain APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SMART SM00316 643 714 9.6E-27 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Pfam PF12836 Helix-hairpin-helix motif 486 550 6.6E-26 T 06-07-2017 APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 Pfam PF09371 Tex-like protein N-terminal domain 8 196 6.3E-68 T 06-07-2017 IPR018974 Tex-like protein, N-terminal APT55_RS09630 dc2444d56926abd4caf57e6d0384145b 763 SUPERFAMILY SSF47781 465 553 1.89E-27 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS26005 ab4a1a5d9b9eab2f61e84fd91e480496 119 Gene3D G3DSA:1.10.10.10 5 55 1.4E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26005 ab4a1a5d9b9eab2f61e84fd91e480496 119 Pfam PF00292 'Paired box' domain 9 97 1.9E-5 T 06-07-2017 IPR001523 Paired domain GO:0003677|GO:0006355 APT55_RS26005 ab4a1a5d9b9eab2f61e84fd91e480496 119 SUPERFAMILY SSF46689 1 109 1.67E-23 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS13670 ab4a1a5d9b9eab2f61e84fd91e480496 119 Gene3D G3DSA:1.10.10.10 5 55 1.4E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13670 ab4a1a5d9b9eab2f61e84fd91e480496 119 Pfam PF00292 'Paired box' domain 9 97 1.9E-5 T 06-07-2017 IPR001523 Paired domain GO:0003677|GO:0006355 APT55_RS13670 ab4a1a5d9b9eab2f61e84fd91e480496 119 SUPERFAMILY SSF46689 1 109 1.67E-23 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS21580 63d8554f7a0800fcfd2ffe44dad5e4a7 358 Pfam PF02915 Rubrerythrin 89 222 2.7E-41 T 06-07-2017 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 APT55_RS21580 63d8554f7a0800fcfd2ffe44dad5e4a7 358 SUPERFAMILY SSF47240 85 247 4.25E-19 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS21580 63d8554f7a0800fcfd2ffe44dad5e4a7 358 Hamap MF_01840 Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 10 358 53.959 T 06-07-2017 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 APT55_RS21580 63d8554f7a0800fcfd2ffe44dad5e4a7 358 TIGRFAM TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 15 349 1.6E-161 T 06-07-2017 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 APT55_RS18205 a053a6dcdbd4856e0df1c3682966de01 214 SUPERFAMILY SSF55068 9 211 6.54E-83 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS18205 a053a6dcdbd4856e0df1c3682966de01 214 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 48 202 5.6E-70 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS18205 a053a6dcdbd4856e0df1c3682966de01 214 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 47 208 38.416 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS18205 a053a6dcdbd4856e0df1c3682966de01 214 Pfam PF01625 Peptide methionine sulfoxide reductase 49 202 2.6E-67 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS18205 a053a6dcdbd4856e0df1c3682966de01 214 Gene3D G3DSA:3.30.1060.10 10 202 1.0E-83 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT55_RS21870 02eebd70d816f03647b176518015a259 608 Gene3D G3DSA:3.30.200.20 15 79 9.9E-21 T 06-07-2017 APT55_RS21870 02eebd70d816f03647b176518015a259 608 Pfam PF00069 Protein kinase domain 17 235 1.1E-48 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS21870 02eebd70d816f03647b176518015a259 608 SUPERFAMILY SSF56112 14 273 1.89E-70 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21870 02eebd70d816f03647b176518015a259 608 Gene3D G3DSA:2.120.10.30 387 424 6.2E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS21870 02eebd70d816f03647b176518015a259 608 Gene3D G3DSA:2.120.10.30 490 563 6.2E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS21870 02eebd70d816f03647b176518015a259 608 Gene3D G3DSA:1.10.510.10 80 265 6.2E-48 T 06-07-2017 APT55_RS21870 02eebd70d816f03647b176518015a259 608 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS21870 02eebd70d816f03647b176518015a259 608 SMART SM00220 17 265 3.3E-62 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS21870 02eebd70d816f03647b176518015a259 608 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 23 46 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS21870 02eebd70d816f03647b176518015a259 608 SUPERFAMILY SSF50969 362 415 1.96E-5 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT55_RS21870 02eebd70d816f03647b176518015a259 608 SUPERFAMILY SSF50969 535 601 1.96E-5 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 PRINTS PR00127 Clp protease catalytic subunit P signature 57 77 7.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 PRINTS PR00127 Clp protease catalytic subunit P signature 88 105 7.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 PRINTS PR00127 Clp protease catalytic subunit P signature 17 32 7.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 PRINTS PR00127 Clp protease catalytic subunit P signature 109 128 7.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 PRINTS PR00127 Clp protease catalytic subunit P signature 166 185 7.3E-56 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 Gene3D G3DSA:3.90.226.10 2 190 2.9E-90 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 Pfam PF00574 Clp protease 11 190 5.8E-88 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 190 5.2E-106 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 SUPERFAMILY SSF52096 10 190 1.34E-73 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 110 123 - T 06-07-2017 IPR033135 ClpP, histidine active site APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 1 191 44.907 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08975 a5940bb861c241dd43a213f04097c336 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 88 99 - T 06-07-2017 IPR018215 ClpP, Ser active site APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 Pfam PF00583 Acetyltransferase (GNAT) family 107 160 6.1E-7 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 Pfam PF00583 Acetyltransferase (GNAT) family 259 328 1.0E-5 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 SUPERFAMILY SSF55729 240 327 1.6E-8 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 SUPERFAMILY SSF55729 72 163 5.4E-13 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 Gene3D G3DSA:3.40.630.30 77 161 4.0E-11 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28405 f55a125cefb5f3b3cd4aaa2aaf01db2b 350 Gene3D G3DSA:3.40.630.30 249 326 1.5E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 187 5.6E-7 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 SUPERFAMILY SSF52833 1 83 2.93E-23 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 Gene3D G3DSA:3.40.30.10 1 80 7.9E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 SUPERFAMILY SSF47616 79 206 5.18E-22 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 Gene3D G3DSA:1.20.1050.10 81 201 2.6E-20 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS30310 ca2501dd065c46316d80fec939e47d34 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 78 1.2E-17 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 SMART SM00331 162 391 1.0E-21 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 Pfam PF00072 Response regulator receiver domain 4 115 4.0E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 Gene3D G3DSA:3.40.50.2300 1 130 3.1E-36 T 06-07-2017 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 SMART SM00448 2 115 2.1E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 SUPERFAMILY SSF52172 1 149 8.97E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24275 dc29839b007568d37e3484854faecd32 392 SUPERFAMILY SSF81606 173 390 1.73E-6 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS24275 dc29839b007568d37e3484854faecd32 392 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 192 391 1.5E-38 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS30760 529198aeabe5209b6a4bb42b1089d3e9 347 Gene3D G3DSA:3.40.50.1980 173 344 4.0E-21 T 06-07-2017 APT55_RS30760 529198aeabe5209b6a4bb42b1089d3e9 347 Gene3D G3DSA:3.40.50.1980 49 172 3.1E-27 T 06-07-2017 APT55_RS30760 529198aeabe5209b6a4bb42b1089d3e9 347 SUPERFAMILY SSF53807 50 340 3.41E-44 T 06-07-2017 APT55_RS30760 529198aeabe5209b6a4bb42b1089d3e9 347 Pfam PF01497 Periplasmic binding protein 67 320 1.3E-20 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS22350 d871a87934017b9831418334e4e34998 228 Gene3D G3DSA:3.30.1380.10 12 214 1.1E-61 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS22350 d871a87934017b9831418334e4e34998 228 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 11 216 28.346 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS22350 d871a87934017b9831418334e4e34998 228 SUPERFAMILY SSF55166 12 214 7.06E-60 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS22350 d871a87934017b9831418334e4e34998 228 Pfam PF01427 D-ala-D-ala dipeptidase 27 215 4.6E-49 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS22350 d871a87934017b9831418334e4e34998 228 PIRSF PIRSF026671 1 226 4.2E-57 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 Pfam PF01555 DNA methylase 30 325 4.0E-43 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 33 39 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 SUPERFAMILY SSF53335 106 333 1.19E-62 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 SUPERFAMILY SSF53335 6 43 1.19E-62 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 Gene3D G3DSA:3.40.50.150 8 45 1.9E-64 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 Gene3D G3DSA:3.40.50.150 105 336 1.9E-64 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 312 332 1.0E-19 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 270 287 1.0E-19 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 29 43 1.0E-19 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 289 307 1.0E-19 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS15885 3d6182cf39efffd266e95315ca36f5e7 517 Pfam PF04471 Restriction endonuclease 367 459 9.5E-10 T 06-07-2017 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 APT55_RS02870 d193a3075f510c46087697aa51158810 267 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS02870 d193a3075f510c46087697aa51158810 267 Pfam PF00005 ABC transporter 25 165 4.4E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS02870 d193a3075f510c46087697aa51158810 267 SUPERFAMILY SSF52540 10 229 4.35E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02870 d193a3075f510c46087697aa51158810 267 Gene3D G3DSA:3.40.50.300 7 221 7.7E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02870 d193a3075f510c46087697aa51158810 267 SMART SM00382 34 228 1.2E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25530 6c476e7827a38afead0b51e3d50ad04a 328 SUPERFAMILY SSF53448 5 231 1.88E-65 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25530 6c476e7827a38afead0b51e3d50ad04a 328 Gene3D G3DSA:3.90.550.10 5 238 1.1E-67 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25530 6c476e7827a38afead0b51e3d50ad04a 328 Pfam PF00535 Glycosyl transferase family 2 8 171 1.1E-35 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 Pfam PF13280 WYL domain 141 314 1.9E-37 T 06-07-2017 IPR026881 WYL domain APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 SMART SM00420 5 51 0.0094 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 Gene3D G3DSA:1.10.10.10 1 56 6.9E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 SUPERFAMILY SSF46785 2 58 1.94E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APT55_RS28720 dda67d2edc8eb96751f48d2a659e1453 323 Pfam PF08279 HTH domain 5 56 6.6E-15 T 06-07-2017 IPR013196 Helix-turn-helix, type 11 APT55_RS13935 33de427467532061fead5296f8943b90 291 Pfam PF10025 Uncharacterized conserved protein (DUF2267) 142 287 8.3E-32 T 06-07-2017 IPR018727 Protein of unknown function DUF2267 APT55_RS15195 a582e13230948d1a674579b62fada1ca 480 Pfam PF00860 Permease family 37 430 1.8E-96 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 APT55_RS15195 a582e13230948d1a674579b62fada1ca 480 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 378 398 - T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT55_RS15195 a582e13230948d1a674579b62fada1ca 480 TIGRFAM TIGR03173 pbuX: xanthine permease 41 462 4.3E-129 T 06-07-2017 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 APT55_RS15195 a582e13230948d1a674579b62fada1ca 480 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 31 459 8.9E-117 T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 31 111 8.1E-9 T 06-07-2017 IPR029464 Type I restriction enzyme R protein, N-terminal domain APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 SUPERFAMILY SSF52540 132 364 8.5E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Pfam PF04851 Type III restriction enzyme, res subunit 163 327 9.6E-41 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Gene3D G3DSA:3.40.50.300 406 533 1.4E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Pfam PF00271 Helicase conserved C-terminal domain 412 529 1.6E-5 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 SMART SM00487 161 362 9.6E-20 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Gene3D G3DSA:3.40.50.300 163 333 7.5E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 SUPERFAMILY SSF52540 397 530 8.24E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 SUPERFAMILY SSF52540 274 324 8.24E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08430 11637feee111ec7b267d0660732bb4f3 779 Pfam PF08463 EcoEI R protein C-terminal 620 774 5.8E-29 T 06-07-2017 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SUPERFAMILY SSF52540 36 81 4.24E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SUPERFAMILY SSF52540 457 579 4.24E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 659 0.0 T 06-07-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Pfam PF02151 UvrB/uvrC motif 628 660 4.4E-10 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:3.30.2060.10 160 237 9.2E-11 T 06-07-2017 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SMART SM00487 8 424 4.0E-23 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Pfam PF04851 Type III restriction enzyme, res subunit 11 118 2.5E-9 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SUPERFAMILY SSF52540 3 413 5.45E-130 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SUPERFAMILY SSF46600 614 662 9.15E-12 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:3.40.50.300 417 580 5.1E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 SMART SM00490 458 544 1.1E-20 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:4.10.860.10 624 664 1.9E-16 T 06-07-2017 IPR001943 UVR domain GO:0005515 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Pfam PF00271 Helicase conserved C-terminal domain 433 543 3.5E-21 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 661 43.336 T 06-07-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Pfam PF12344 Ultra-violet resistance protein B 550 590 1.2E-21 T 06-07-2017 IPR024759 UvrB, YAD/RRR-motif-containing domain APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:3.40.50.300 276 336 1.7E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:3.40.50.300 6 88 1.7E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15290 140b4b4b3f2e9ea5c406b258a95e68e4 667 Gene3D G3DSA:3.40.50.300 386 406 1.7E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 Gene3D G3DSA:3.30.470.10 8 130 3.4E-26 T 06-07-2017 APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 300 3.7E-81 T 06-07-2017 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108 APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 SUPERFAMILY SSF56752 7 298 4.71E-81 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 ProSitePatterns PS00770 Aminotransferases class-IV signature. 190 219 - T 06-07-2017 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 Gene3D G3DSA:3.20.10.10 134 287 2.1E-49 T 06-07-2017 APT55_RS17790 910fca7406717043d7ad0c3f09fe948d 303 Pfam PF01063 Amino-transferase class IV 54 264 1.7E-44 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS27795 54bee37c7d9d15da31367edf50e5def7 244 SUPERFAMILY SSF53448 3 243 3.05E-62 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27795 54bee37c7d9d15da31367edf50e5def7 244 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 5 233 1.4E-59 T 06-07-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APT55_RS27795 54bee37c7d9d15da31367edf50e5def7 244 Gene3D G3DSA:3.90.550.10 3 241 1.1E-72 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27795 54bee37c7d9d15da31367edf50e5def7 244 Pfam PF02348 Cytidylyltransferase 6 212 5.1E-52 T 06-07-2017 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 APT55_RS27795 54bee37c7d9d15da31367edf50e5def7 244 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 2 241 37.158 T 06-07-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PRINTS PR00981 Seryl-tRNA synthetase signature 334 350 1.2E-32 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PRINTS PR00981 Seryl-tRNA synthetase signature 352 368 1.2E-32 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PRINTS PR00981 Seryl-tRNA synthetase signature 277 290 1.2E-32 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PRINTS PR00981 Seryl-tRNA synthetase signature 317 330 1.2E-32 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PRINTS PR00981 Seryl-tRNA synthetase signature 265 277 1.2E-32 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 Gene3D G3DSA:3.30.930.10 108 420 4.6E-131 T 06-07-2017 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 SUPERFAMILY SSF46589 2 115 2.72E-25 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 110 2.8E-28 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 423 40.226 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 2 418 1.2E-168 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 Gene3D G3DSA:1.10.287.40 2 107 3.2E-26 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 224 401 1.4E-33 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 PIRSF PIRSF001529 1 423 6.0E-164 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS25545 9348bd55910dfa91494545d7816b2817 423 SUPERFAMILY SSF55681 119 420 8.96E-96 T 06-07-2017 APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.115 T 06-07-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 SUPERFAMILY SSF47973 7 149 5.23E-59 T 06-07-2017 IPR023798 Ribosomal protein S7 domain APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 06-07-2017 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 PIRSF PIRSF002122 3 156 1.4E-55 T 06-07-2017 IPR000235 Ribosomal protein S5/S7 GO:0006412 APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.3E-66 T 06-07-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 Gene3D G3DSA:1.10.455.10 8 156 2.6E-62 T 06-07-2017 IPR023798 Ribosomal protein S7 domain APT55_RS16605 f436f3da8140cdefc7c8c68fec8806e4 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.5E-61 T 06-07-2017 IPR023798 Ribosomal protein S7 domain APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 SMART SM00862 149 224 8.2E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 Gene3D G3DSA:3.40.50.2300 1 123 2.1E-37 T 06-07-2017 APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 Pfam PF00072 Response regulator receiver domain 3 114 1.9E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 SUPERFAMILY SSF52172 1 134 2.85E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 224 8.1E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 Gene3D G3DSA:1.10.10.10 124 225 1.2E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 SUPERFAMILY SSF46894 120 225 1.5E-23 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS29045 a903f97de151f8df8f5ead3c94206752 228 SMART SM00448 1 114 2.0E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05150 a46257b90174941f9e9da129f99f8bde 129 Gene3D G3DSA:3.30.479.10 2 127 2.1E-32 T 06-07-2017 APT55_RS05150 a46257b90174941f9e9da129f99f8bde 129 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 127 5.7E-30 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 APT55_RS05150 a46257b90174941f9e9da129f99f8bde 129 PIRSF PIRSF006113 1 129 6.4E-22 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 APT55_RS05150 a46257b90174941f9e9da129f99f8bde 129 SUPERFAMILY SSF55620 2 128 1.39E-31 T 06-07-2017 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 Gene3D G3DSA:2.40.50.100 78 99 9.2E-10 T 06-07-2017 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 Gene3D G3DSA:2.40.50.100 259 288 9.2E-10 T 06-07-2017 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 TIGRFAM TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family 53 387 3.8E-110 T 06-07-2017 IPR014315 ABC transporter, membrane fusion protein, DevB type APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 79 99 3.9E-7 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 309 333 3.9E-7 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 Pfam PF13533 Biotin-lipoyl like 64 117 3.2E-12 T 06-07-2017 APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 201 345 9.4E-9 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS16120 5b29b0e237e340da2a4df24f4cda34f2 390 SUPERFAMILY SSF111369 216 341 1.2E-7 T 06-07-2017 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SUPERFAMILY SSF56112 717 785 2.4E-8 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SUPERFAMILY SSF56112 833 946 2.4E-8 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Pfam PF00128 Alpha amylase, catalytic domain 36 389 2.3E-76 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SUPERFAMILY SSF51011 468 548 8.31E-17 T 06-07-2017 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Pfam PF16657 Maltogenic Amylase, C-terminal domain 468 545 2.7E-27 T 06-07-2017 IPR032091 Maltogenic Amylase, C-terminal APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Gene3D G3DSA:2.60.40.1180 468 548 1.7E-18 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SUPERFAMILY SSF51445 10 331 2.68E-127 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SUPERFAMILY SSF51445 358 465 2.68E-127 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Gene3D G3DSA:3.20.20.80 447 460 6.2E-107 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Gene3D G3DSA:3.20.20.80 189 414 6.2E-107 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Gene3D G3DSA:3.20.20.80 15 112 6.2E-107 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 Gene3D G3DSA:3.90.400.10 113 181 2.5E-23 T 06-07-2017 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 12 549 3.3E-276 T 06-07-2017 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 APT55_RS05075 e5a75a5a394b674c9e9b799d389fd24d 1072 SMART SM00642 21 415 1.3E-102 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 Pfam PF00831 Ribosomal L29 protein 8 63 1.2E-20 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 SUPERFAMILY SSF46561 4 66 1.7E-19 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 ProSitePatterns PS00579 Ribosomal protein L29 signature. 42 56 - T 06-07-2017 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 3 63 15.604 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 10 63 1.3E-18 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24745 d6e53b739f2e07fc518aef6dc52159e6 68 Gene3D G3DSA:1.10.287.310 5 66 3.1E-21 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 Gene3D G3DSA:1.10.8.60 169 243 4.9E-27 T 06-07-2017 APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 Gene3D G3DSA:3.40.50.300 15 168 1.6E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 SMART SM00382 37 181 8.0E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 Pfam PF13177 DNA polymerase III, delta subunit 20 180 1.8E-43 T 06-07-2017 APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 Gene3D G3DSA:1.20.272.10 244 322 9.4E-5 T 06-07-2017 APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 SUPERFAMILY SSF52540 33 228 4.86E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 SUPERFAMILY SSF48019 264 371 4.25E-5 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT55_RS29990 b5abd40190f5bd72951db3d33eeb8953 450 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 361 8.9E-122 T 06-07-2017 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 APT55_RS03435 665404a67ada4a2ab54faf0b093ee3a0 305 Gene3D G3DSA:3.90.550.10 2 206 2.1E-49 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03435 665404a67ada4a2ab54faf0b093ee3a0 305 SUPERFAMILY SSF53448 3 260 7.24E-55 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03435 665404a67ada4a2ab54faf0b093ee3a0 305 Pfam PF00535 Glycosyl transferase family 2 4 110 5.7E-33 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SUPERFAMILY SSF51126 556 586 1.32E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SUPERFAMILY SSF51126 472 524 1.32E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 Pfam PF05860 haemagglutination activity domain 31 142 1.8E-31 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 Gene3D G3DSA:2.160.20.10 47 331 7.9E-37 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SUPERFAMILY SSF51126 375 507 1.35E-9 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SUPERFAMILY SSF51126 55 148 1.79E-42 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SUPERFAMILY SSF51126 206 372 1.79E-42 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 61 139 9.7E-26 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS14540 8792df8585a6700c06a7b1d2526a739b 839 SMART SM00912 31 143 3.5E-23 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 SUPERFAMILY SSF56176 11 223 1.59E-66 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 SUPERFAMILY SSF55103 226 473 1.44E-62 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 Gene3D G3DSA:3.30.465.10 103 223 1.0E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 464 7.0E-67 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 Pfam PF01565 FAD binding domain 48 186 3.2E-35 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 Gene3D G3DSA:1.10.45.10 425 464 1.1E-5 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 Gene3D G3DSA:3.30.43.10 6 101 1.0E-26 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS17810 32a0b6bd42852c6a63dec6da580aeb7f 489 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 52 463 4.3E-172 T 06-07-2017 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 APT55_RS30655 44fe83c693667951f207a97d10dc9387 460 Gene3D G3DSA:3.40.50.300 133 272 8.3E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30655 44fe83c693667951f207a97d10dc9387 460 Pfam PF00931 NB-ARC domain 148 241 8.8E-9 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS30655 44fe83c693667951f207a97d10dc9387 460 SUPERFAMILY SSF52540 135 394 3.76E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 Gene3D G3DSA:3.30.70.240 2 70 2.4E-28 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 4 83 1.6E-20 T 06-07-2017 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 Pfam PF09827 CRISPR associated protein Cas2 3 73 1.9E-24 T 06-07-2017 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 PIRSF PIRSF032582 2 92 3.9E-29 T 06-07-2017 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 2 84 18.781 T 06-07-2017 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 APT55_RS31445 5bf00b93e6b7cc4cc955d01d0d01034f 92 SUPERFAMILY SSF143430 2 79 1.57E-26 T 06-07-2017 APT55_RS02435 f9f89e66df4b65dd9af69cec4bb57ac3 706 SMART SM00331 247 488 6.6E-22 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS02435 f9f89e66df4b65dd9af69cec4bb57ac3 706 SMART SM00332 232 486 2.9E-17 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS02435 f9f89e66df4b65dd9af69cec4bb57ac3 706 Pfam PF13672 Protein phosphatase 2C 252 456 4.6E-17 T 06-07-2017 APT55_RS02435 f9f89e66df4b65dd9af69cec4bb57ac3 706 Gene3D G3DSA:3.60.40.10 240 488 2.3E-52 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS02435 f9f89e66df4b65dd9af69cec4bb57ac3 706 SUPERFAMILY SSF81606 241 487 1.96E-50 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 SUPERFAMILY SSF48208 45 387 3.06E-70 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 Gene3D G3DSA:1.50.10.10 42 387 5.0E-81 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 Pfam PF01270 Glycosyl hydrolases family 8 35 386 3.3E-44 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 71 84 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 376 390 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 245 256 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 137 155 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 274 283 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00060 6a7aaf72076352582df350b4dfa90511 408 PRINTS PR00735 Glycosyl hydrolase family 8 signature 204 221 3.2E-18 T 06-07-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS00200 ca3f8c29e04825bff507323816bfd965 99 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 4.4E-20 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS00200 ca3f8c29e04825bff507323816bfd965 99 SMART SM00360 2 75 1.1E-24 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS00200 ca3f8c29e04825bff507323816bfd965 99 Gene3D G3DSA:3.30.70.330 2 95 5.7E-30 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS00200 ca3f8c29e04825bff507323816bfd965 99 SUPERFAMILY SSF54928 2 98 1.26E-30 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS28490 8720371605046e8994fbc6fc22b0517d 91 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 13 78 3.3E-12 T 06-07-2017 APT55_RS28490 8720371605046e8994fbc6fc22b0517d 91 SUPERFAMILY SSF69318 11 86 2.35E-13 T 06-07-2017 APT55_RS28490 8720371605046e8994fbc6fc22b0517d 91 Gene3D G3DSA:2.130.10.130 11 85 2.9E-9 T 06-07-2017 APT55_RS02335 9a92c29bc80e785db92d814dc15b34a6 243 Gene3D G3DSA:3.10.50.40 120 231 9.3E-12 T 06-07-2017 APT55_RS02335 9a92c29bc80e785db92d814dc15b34a6 243 Pfam PF00639 PPIC-type PPIASE domain 132 209 2.2E-7 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS02335 9a92c29bc80e785db92d814dc15b34a6 243 SUPERFAMILY SSF109998 6 149 4.71E-14 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS02335 9a92c29bc80e785db92d814dc15b34a6 243 SUPERFAMILY SSF54534 100 210 1.31E-14 T 06-07-2017 APT55_RS17055 df5551ab258e2cda88194529ee13fa45 134 SMART SM00448 10 124 1.0E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17055 df5551ab258e2cda88194529ee13fa45 134 Gene3D G3DSA:3.40.50.2300 8 131 2.3E-36 T 06-07-2017 APT55_RS17055 df5551ab258e2cda88194529ee13fa45 134 Pfam PF00072 Response regulator receiver domain 12 124 1.9E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17055 df5551ab258e2cda88194529ee13fa45 134 SUPERFAMILY SSF52172 12 131 5.69E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 SUPERFAMILY SSF101904 749 856 1.57E-96 T 06-07-2017 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 SUPERFAMILY SSF101904 507 716 1.57E-96 T 06-07-2017 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 475 2.4E-157 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 802 849 6.2E-12 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 513 557 1.7E-12 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 562 612 4.2E-6 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 666 714 9.7E-11 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 618 660 5.8E-9 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 754 799 1.3E-8 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Gene3D G3DSA:2.120.10.90 506 715 2.2E-110 T 06-07-2017 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Gene3D G3DSA:2.120.10.90 749 848 2.2E-110 T 06-07-2017 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Gene3D G3DSA:3.30.1360.40 241 341 6.2E-38 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 SUPERFAMILY SSF56719 34 495 1.83E-173 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 9 850 23.46 T 06-07-2017 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 SMART SM00434 15 473 5.8E-286 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Gene3D G3DSA:3.90.199.10 34 240 3.0E-116 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 Gene3D G3DSA:3.90.199.10 342 407 3.0E-116 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT55_RS15140 0dabf40e3d7f89c00cdee74ad2dc186b 885 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 848 0.0 T 06-07-2017 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SUPERFAMILY SSF48439 24 239 5.62E-53 T 06-07-2017 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Pfam PF13432 Tetratricopeptide repeat 182 229 5.2E-4 T 06-07-2017 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Pfam PF13432 Tetratricopeptide repeat 114 173 3.4E-7 T 06-07-2017 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Pfam PF00515 Tetratricopeptide repeat 41 72 7.6E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Pfam PF07719 Tetratricopeptide repeat 74 107 1.0E-5 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Gene3D G3DSA:1.25.40.10 5 86 1.7E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Gene3D G3DSA:1.25.40.10 193 249 5.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 Gene3D G3DSA:1.25.40.10 87 192 2.5E-32 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 108 141 0.021 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 74 107 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 40 73 1.2E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 176 209 0.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 210 243 0.91 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 142 175 0.0031 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26600 5d0cbc8d9e1672fe6a1c825e65b9e376 274 SMART SM00028 6 39 91.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 239 8.0E-32 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 SUPERFAMILY SSF52317 254 448 6.81E-40 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 Gene3D G3DSA:3.40.50.300 1 235 6.6E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 489 191.325 T 06-07-2017 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 SUPERFAMILY SSF52540 1 233 1.06E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 487 2.4E-204 T 06-07-2017 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 Gene3D G3DSA:3.40.50.880 251 449 1.2E-32 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS12275 ac379fd38f9c016d1b6dd0cec9a1e17b 489 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 252 438 6.6E-61 T 06-07-2017 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 SUPERFAMILY SSF50494 231 409 2.96E-48 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 PRINTS PR00834 HtrA/DegQ protease family signature 376 393 2.2E-20 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 PRINTS PR00834 HtrA/DegQ protease family signature 261 273 2.2E-20 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 PRINTS PR00834 HtrA/DegQ protease family signature 324 348 2.2E-20 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 PRINTS PR00834 HtrA/DegQ protease family signature 282 302 2.2E-20 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 Gene3D G3DSA:2.40.10.10 327 410 4.2E-32 T 06-07-2017 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 Pfam PF13365 Trypsin-like peptidase domain 252 383 1.3E-31 T 06-07-2017 APT55_RS20915 caf8f14a9d46df95486c2eb5064ac2db 432 Gene3D G3DSA:2.40.10.10 244 326 7.3E-22 T 06-07-2017 APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 SUPERFAMILY SSF52540 62 352 1.11E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 SMART SM00490 252 333 2.2E-27 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Pfam PF16124 RecQ zinc-binding 418 481 5.8E-15 T 06-07-2017 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Gene3D G3DSA:1.10.10.10 425 483 4.8E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 140 149 - T 06-07-2017 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Pfam PF00270 DEAD/DEAH box helicase 24 187 4.8E-16 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 SMART SM00487 18 219 9.9E-27 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 351 1.4E-114 T 06-07-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Gene3D G3DSA:3.40.50.300 9 202 6.5E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Gene3D G3DSA:3.40.50.300 206 348 1.9E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23150 32e06d77cc151e944862e85d4b544fc2 545 Pfam PF00271 Helicase conserved C-terminal domain 233 333 1.4E-17 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS18305 8bb346d598b5623ac2f352c3be513b54 367 TIGRFAM TIGR00303 TIGR00303: TIGR00303 family protein 19 356 8.1E-114 T 06-07-2017 IPR002805 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, putative APT55_RS18305 8bb346d598b5623ac2f352c3be513b54 367 Pfam PF02277 Phosphoribosyltransferase 98 263 3.4E-6 T 06-07-2017 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS18305 8bb346d598b5623ac2f352c3be513b54 367 Gene3D G3DSA:3.40.50.10210 95 339 7.7E-29 T 06-07-2017 APT55_RS18305 8bb346d598b5623ac2f352c3be513b54 367 SUPERFAMILY SSF52733 41 357 1.96E-48 T 06-07-2017 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS18305 8bb346d598b5623ac2f352c3be513b54 367 Hamap MF_01086 UPF0284 protein . 1 367 136.556 T 06-07-2017 IPR002805 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, putative APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Pfam PF02563 Polysaccharide biosynthesis/export protein 322 395 4.7E-14 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 SUPERFAMILY SSF142984 622 655 6.8E-5 T 06-07-2017 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Pfam PF10531 SLBB domain 405 460 1.9E-5 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Pfam PF10531 SLBB domain 517 563 2.3E-5 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Pfam PF10531 SLBB domain 621 674 2.8E-15 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Gene3D G3DSA:3.30.1950.10 330 394 4.4E-12 T 06-07-2017 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Gene3D G3DSA:3.10.560.10 621 702 6.0E-15 T 06-07-2017 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Gene3D G3DSA:3.10.560.10 505 598 8.9E-25 T 06-07-2017 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Gene3D G3DSA:3.10.560.10 395 488 1.6E-21 T 06-07-2017 APT55_RS10510 1ed5c62d66bb3223e5e5994213352c56 732 Pfam PF00395 S-layer homology domain 177 216 5.1E-9 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 Gene3D G3DSA:3.90.25.10 183 313 6.3E-30 T 06-07-2017 APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 SUPERFAMILY SSF51735 5 315 2.72E-87 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 305 2.2E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 PRINTS PR01713 Nucleotide sugar epimerase signature 30 46 3.9E-15 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 PRINTS PR01713 Nucleotide sugar epimerase signature 238 253 3.9E-15 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 PRINTS PR01713 Nucleotide sugar epimerase signature 277 294 3.9E-15 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 PRINTS PR01713 Nucleotide sugar epimerase signature 215 230 3.9E-15 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS03905 241a4283961c2dc35f1d9fd04b8357a0 316 Gene3D G3DSA:3.40.50.720 5 182 3.4E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 PRINTS PR00301 70kDa heat shock protein signature 493 509 2.4E-8 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 PRINTS PR00301 70kDa heat shock protein signature 185 195 2.4E-8 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 PRINTS PR00301 70kDa heat shock protein signature 333 349 2.4E-8 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 PRINTS PR00301 70kDa heat shock protein signature 1 14 2.4E-8 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 SUPERFAMILY SSF53067 4 170 7.56E-24 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 SUPERFAMILY SSF53067 174 194 6.41E-32 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 SUPERFAMILY SSF53067 226 377 6.41E-32 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 179 192 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Gene3D G3DSA:3.30.420.40 109 183 2.8E-22 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Gene3D G3DSA:3.30.420.40 4 75 2.8E-22 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Pfam PF00012 Hsp70 protein 127 194 1.5E-9 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Pfam PF00012 Hsp70 protein 233 374 7.8E-18 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Gene3D G3DSA:3.30.420.40 318 358 2.6E-19 T 06-07-2017 APT55_RS22330 9f8c398698e319aef78c31369443ecf2 531 Gene3D G3DSA:3.30.420.40 184 239 2.6E-19 T 06-07-2017 APT55_RS24390 e93ad67147f118e901cb565bc68b93b5 533 Pfam PF13524 Glycosyl transferases group 1 208 292 1.0E-19 T 06-07-2017 APT55_RS24390 e93ad67147f118e901cb565bc68b93b5 533 SUPERFAMILY SSF53756 45 301 4.24E-5 T 06-07-2017 APT55_RS24940 6458765381d56871dc5b5e32b268bb38 244 SUPERFAMILY SSF52266 50 239 4.43E-34 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS24940 6458765381d56871dc5b5e32b268bb38 244 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 77 229 1.8E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS24940 6458765381d56871dc5b5e32b268bb38 244 Gene3D G3DSA:3.40.50.1110 52 238 1.1E-32 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 SUPERFAMILY SSF55681 5 169 9.44E-41 T 06-07-2017 APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 Gene3D G3DSA:2.30.30.100 195 228 1.8E-6 T 06-07-2017 APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 SUPERFAMILY SSF50037 187 227 3.48E-5 T 06-07-2017 IPR008988 Transcriptional repressor, C-terminal APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 Pfam PF03099 Biotin/lipoate A/B protein ligase family 10 128 1.1E-19 T 06-07-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 Gene3D G3DSA:3.30.930.10 6 171 1.1E-44 T 06-07-2017 APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 Pfam PF02237 Biotin protein ligase C terminal domain 187 227 1.2E-4 T 06-07-2017 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS06915 8060227bfbbca2c1a0c68ff65f3419fa 240 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 8 227 1.1E-43 T 06-07-2017 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS17530 5c8bb9a3c7e9f1ae7f596ad52d2e07c9 260 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 25 220 1.9E-46 T 06-07-2017 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 APT55_RS17530 5c8bb9a3c7e9f1ae7f596ad52d2e07c9 260 Pfam PF02361 Cobalt transport protein 19 224 3.5E-34 T 06-07-2017 IPR003339 ABC/ECF transporter, transmembrane component APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 SMART SM00100 1 118 3.3E-9 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 SMART SM00419 151 199 2.6E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 Pfam PF00027 Cyclic nucleotide-binding domain 22 106 7.4E-17 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 Gene3D G3DSA:2.60.120.10 7 128 3.5E-24 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 Gene3D G3DSA:1.10.10.10 136 197 5.1E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 SUPERFAMILY SSF51206 8 125 1.96E-26 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 Pfam PF13545 Crp-like helix-turn-helix domain 138 197 1.6E-11 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS28365 5a808eba128d081b9f14388148c5bbbe 199 SUPERFAMILY SSF46785 133 197 3.16E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS21355 25878b59991b14b83f91c77132a7f5b6 538 SUPERFAMILY SSF56112 10 253 1.64E-41 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21355 25878b59991b14b83f91c77132a7f5b6 538 Gene3D G3DSA:1.10.510.10 83 211 4.7E-25 T 06-07-2017 APT55_RS21355 25878b59991b14b83f91c77132a7f5b6 538 Pfam PF00069 Protein kinase domain 14 214 2.5E-23 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS21355 25878b59991b14b83f91c77132a7f5b6 538 Gene3D G3DSA:3.30.200.20 8 82 8.6E-17 T 06-07-2017 APT55_RS23355 5ae545b07cabc9c4c4a497ef547daf82 161 Pfam PF01724 Domain of unknown function DUF29 12 152 3.7E-45 T 06-07-2017 IPR002636 Protein from unkown function DUF29 APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 SUPERFAMILY SSF52540 1 296 1.32E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 SUPERFAMILY SSF49764 319 390 2.3E-6 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 5 305 1.6E-112 T 06-07-2017 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 Gene3D G3DSA:3.40.50.300 194 294 3.4E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 Gene3D G3DSA:3.40.50.300 2 157 3.4E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10185 4e22ff7ca480adc82b3cfe4bec4bf97a 396 Pfam PF02374 Anion-transporting ATPase 1 306 2.0E-109 T 06-07-2017 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 Gene3D G3DSA:1.25.10.10 833 881 4.6E-13 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 Gene3D G3DSA:1.25.10.10 676 800 4.6E-13 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 Pfam PF05729 NACHT domain 244 384 1.4E-10 T 06-07-2017 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SUPERFAMILY SSF52540 230 362 2.09E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SMART SM00382 241 382 2.5E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 Pfam PF13646 HEAT repeats 705 795 7.0E-10 T 06-07-2017 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SMART SM00567 E-Z type HEAT repeats 717 748 230.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SMART SM00567 E-Z type HEAT repeats 682 714 28.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SMART SM00567 E-Z type HEAT repeats 849 880 320.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SMART SM00567 E-Z type HEAT repeats 751 782 2.1 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SUPERFAMILY SSF48371 670 800 9.78E-11 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 SUPERFAMILY SSF48371 833 880 9.78E-11 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS24865 b42207466475ca36a08b0b9f78960971 959 Gene3D G3DSA:3.40.50.300 228 360 3.8E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14510 5881e4e9250da3f1f04ca483ee562ca2 1222 Pfam PF11965 Domain of unknown function (DUF3479) 3 159 1.9E-52 T 06-07-2017 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS14510 5881e4e9250da3f1f04ca483ee562ca2 1222 Pfam PF02514 CobN/Magnesium Chelatase 163 1199 0.0 T 06-07-2017 IPR003672 CobN/magnesium chelatase GO:0009058 APT55_RS14510 5881e4e9250da3f1f04ca483ee562ca2 1222 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 2 773 1.8E-268 T 06-07-2017 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 400 3.6E-128 T 06-07-2017 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 Gene3D G3DSA:3.40.50.1950 5 186 5.6E-68 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 SUPERFAMILY SSF102645 187 404 1.03E-66 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 SUPERFAMILY SSF52507 6 182 1.11E-56 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 Pfam PF02441 Flavoprotein 6 133 8.1E-37 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 374 3.9E-61 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT55_RS18155 63b1555e70a9e42800de8c33e392b16a 417 Gene3D G3DSA:3.40.50.10300 187 405 6.9E-70 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT55_RS00720 110b39b3e7aa5c91d143bf640c407d57 609 SUPERFAMILY SSF52540 286 424 1.35E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00720 110b39b3e7aa5c91d143bf640c407d57 609 Gene3D G3DSA:3.40.50.300 277 403 2.4E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 Hamap MF_01416 ATP synthase subunit delta [atpD]. 6 183 19.343 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 143 162 - T 06-07-2017 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 Gene3D G3DSA:1.10.520.20 8 108 7.0E-19 T 06-07-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 PRINTS PR00125 ATP synthase delta subunit signature 10 29 3.9E-29 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 PRINTS PR00125 ATP synthase delta subunit signature 79 90 3.9E-29 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 PRINTS PR00125 ATP synthase delta subunit signature 156 174 3.9E-29 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 PRINTS PR00125 ATP synthase delta subunit signature 90 104 3.9E-29 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 PRINTS PR00125 ATP synthase delta subunit signature 141 156 3.9E-29 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 Pfam PF00213 ATP synthase delta (OSCP) subunit 12 179 1.4E-49 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 SUPERFAMILY SSF47928 8 109 5.89E-23 T 06-07-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 12 180 8.9E-50 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 APT55_RS08600 c5d38718241261f30eb0999dda4c035a 185 SUPERFAMILY SSF160527 100 177 8.63E-5 T 06-07-2017 APT55_RS25775 09e0424f88df2339282869f5357774bc 102 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 91 1.7E-15 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 SMART SM00255 4 157 9.8E-6 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 Gene3D G3DSA:3.40.50.300 166 314 3.4E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 SUPERFAMILY SSF52200 7 147 1.2E-22 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 SUPERFAMILY SSF52540 167 383 3.01E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 Pfam PF13676 TIR domain 8 116 1.1E-20 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS04645 95cf429c8eb675b1acd4f94de7deea1b 388 Gene3D G3DSA:3.40.50.10140 7 133 1.3E-11 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS27270 ac8017354119b62099259920678e7401 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 425 7.7E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27270 ac8017354119b62099259920678e7401 428 Pfam PF00989 PAS fold 72 143 3.5E-5 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS27270 ac8017354119b62099259920678e7401 428 SUPERFAMILY SSF55874 244 424 1.7E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27270 ac8017354119b62099259920678e7401 428 SMART SM00387 300 426 1.8E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27270 ac8017354119b62099259920678e7401 428 Pfam PF00512 His Kinase A (phospho-acceptor) domain 191 252 5.5E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27270 ac8017354119b62099259920678e7401 428 Gene3D G3DSA:1.10.287.130 183 249 3.8E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27270 ac8017354119b62099259920678e7401 428 Gene3D G3DSA:3.30.565.10 258 426 4.9E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27270 ac8017354119b62099259920678e7401 428 Gene3D G3DSA:3.30.450.20 62 179 7.2E-8 T 06-07-2017 APT55_RS27270 ac8017354119b62099259920678e7401 428 SUPERFAMILY SSF55785 61 146 5.71E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS27270 ac8017354119b62099259920678e7401 428 SUPERFAMILY SSF47384 177 252 3.73E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27270 ac8017354119b62099259920678e7401 428 SMART SM00388 190 254 6.1E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27270 ac8017354119b62099259920678e7401 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.8E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS27270 ac8017354119b62099259920678e7401 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 2.8E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS18175 374ed5f32fe8cee4ed3fd151285df48b 433 Gene3D G3DSA:3.40.50.1100 204 403 1.7E-39 T 06-07-2017 APT55_RS18175 374ed5f32fe8cee4ed3fd151285df48b 433 Gene3D G3DSA:3.40.50.1100 120 203 3.1E-33 T 06-07-2017 APT55_RS18175 374ed5f32fe8cee4ed3fd151285df48b 433 SUPERFAMILY SSF53686 9 421 3.93E-92 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS18175 374ed5f32fe8cee4ed3fd151285df48b 433 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 85 387 4.0E-71 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS18175 374ed5f32fe8cee4ed3fd151285df48b 433 TIGRFAM TIGR00260 thrC: threonine synthase 67 394 1.5E-101 T 06-07-2017 IPR004450 Threonine synthase-like APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 10 480 4.5E-117 T 06-07-2017 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 SUPERFAMILY SSF56024 271 467 4.04E-47 T 06-07-2017 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 Gene3D G3DSA:3.30.870.10 112 312 5.5E-48 T 06-07-2017 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 SMART SM00155 218 245 2.6E-5 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 SMART SM00155 393 420 5.6E-5 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 Gene3D G3DSA:3.30.870.10 320 456 3.9E-37 T 06-07-2017 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 Pfam PF13091 PLD-like domain 136 253 8.4E-14 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 Pfam PF13091 PLD-like domain 321 445 5.5E-27 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS15700 cc63ac4df586f2592f31e1d46b1d8844 480 SUPERFAMILY SSF56024 95 309 7.53E-50 T 06-07-2017 APT55_RS10760 2a8160245759b0d6006c7306330354e1 263 Hamap MF_00042 Ribonuclease H [rnhA]. 4 155 29.499 T 06-07-2017 IPR022892 Ribonuclease H GO:0004523 APT55_RS10760 2a8160245759b0d6006c7306330354e1 263 Pfam PF00075 RNase H 9 144 1.0E-42 T 06-07-2017 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 APT55_RS10760 2a8160245759b0d6006c7306330354e1 263 Gene3D G3DSA:3.30.420.10 8 148 2.0E-51 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS10760 2a8160245759b0d6006c7306330354e1 263 SUPERFAMILY SSF53098 8 145 4.81E-50 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS24875 6f32a2a6086b1c90047675be7f56ce52 177 Pfam PF13778 Domain of unknown function (DUF4174) 57 172 3.2E-37 T 06-07-2017 IPR025232 Domain of unknown function DUF4174 APT55_RS01135 5df5da242b61de3d1ec193d77701c4e5 130 SUPERFAMILY SSF55298 2 129 1.57E-46 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS01135 5df5da242b61de3d1ec193d77701c4e5 130 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 06-07-2017 IPR019897 RidA, conserved site APT55_RS01135 5df5da242b61de3d1ec193d77701c4e5 130 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 3.7E-51 T 06-07-2017 IPR006056 RidA family APT55_RS01135 5df5da242b61de3d1ec193d77701c4e5 130 Pfam PF01042 Endoribonuclease L-PSP 9 127 4.4E-44 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family APT55_RS01135 5df5da242b61de3d1ec193d77701c4e5 130 Gene3D G3DSA:3.30.1330.40 2 127 2.8E-49 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS10665 89b1ef92588960a198f0b306b8bc2dd9 401 Gene3D G3DSA:3.40.50.2000 175 336 4.5E-25 T 06-07-2017 APT55_RS10665 89b1ef92588960a198f0b306b8bc2dd9 401 Pfam PF00534 Glycosyl transferases group 1 200 357 2.3E-24 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10665 89b1ef92588960a198f0b306b8bc2dd9 401 SUPERFAMILY SSF53756 16 386 2.47E-58 T 06-07-2017 APT55_RS10665 89b1ef92588960a198f0b306b8bc2dd9 401 Pfam PF13439 Glycosyltransferase Family 4 25 186 4.2E-10 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS11890 a786d64ba125907dd5dc0088a3c08ca5 401 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 267 396 2.7E-12 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS11890 a786d64ba125907dd5dc0088a3c08ca5 401 Gene3D G3DSA:3.40.50.300 257 393 1.8E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11890 a786d64ba125907dd5dc0088a3c08ca5 401 SUPERFAMILY SSF52540 257 397 4.62E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23880 35f5c3cf4faa48400200d451fd94d575 356 SUPERFAMILY SSF54523 24 93 1.18E-7 T 06-07-2017 APT55_RS23880 35f5c3cf4faa48400200d451fd94d575 356 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 22 42 - T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23880 35f5c3cf4faa48400200d451fd94d575 356 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 21 43 5.6E-8 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23880 35f5c3cf4faa48400200d451fd94d575 356 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 21 43 2.4E-7 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 SUPERFAMILY SSF51126 23 324 8.95E-39 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 Gene3D G3DSA:2.160.20.10 308 322 7.3E-33 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 Gene3D G3DSA:2.160.20.10 40 272 7.3E-33 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 SUPERFAMILY SSF51126 518 654 2.01E-8 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 Pfam PF05860 haemagglutination activity domain 26 137 1.8E-28 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 SMART SM00912 31 138 7.1E-20 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 SUPERFAMILY SSF51126 398 503 6.91E-9 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07400 2ded4cf931e9e43277c76a80c3c3dc1d 888 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 56 133 1.4E-22 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS03240 1f415fe95489fea3d9ffbae308d9c012 397 Pfam PF07690 Major Facilitator Superfamily 143 358 5.7E-10 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS03240 1f415fe95489fea3d9ffbae308d9c012 397 SUPERFAMILY SSF103473 17 388 5.89E-18 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS03240 1f415fe95489fea3d9ffbae308d9c012 397 Gene3D G3DSA:1.20.1250.20 23 208 1.4E-7 T 06-07-2017 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 163 24.407 T 06-07-2017 IPR007551 Protein of unknown function DUF520 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 Gene3D G3DSA:3.30.70.990 13 97 9.8E-29 T 06-07-2017 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 SUPERFAMILY SSF89963 92 163 1.7E-27 T 06-07-2017 IPR007551 Protein of unknown function DUF520 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 SUPERFAMILY SSF89963 6 90 1.73E-25 T 06-07-2017 IPR007551 Protein of unknown function DUF520 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 Pfam PF04461 Protein of unknown function (DUF520) 6 163 1.9E-59 T 06-07-2017 IPR007551 Protein of unknown function DUF520 APT55_RS01520 403ac139a16002aaa0979164fa76b665 163 Gene3D G3DSA:3.30.70.860 98 163 2.8E-30 T 06-07-2017 APT55_RS14560 2fd0583599ccd938364685738888335d 504 SUPERFAMILY SSF51905 4 291 2.59E-84 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14560 2fd0583599ccd938364685738888335d 504 SUPERFAMILY SSF51905 446 503 2.59E-84 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14560 2fd0583599ccd938364685738888335d 504 Pfam PF00732 GMC oxidoreductase 7 298 1.3E-85 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT55_RS14560 2fd0583599ccd938364685738888335d 504 Gene3D G3DSA:3.50.50.60 190 316 6.3E-127 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14560 2fd0583599ccd938364685738888335d 504 Gene3D G3DSA:3.50.50.60 3 127 6.3E-127 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14560 2fd0583599ccd938364685738888335d 504 Gene3D G3DSA:3.50.50.60 440 503 6.3E-127 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14560 2fd0583599ccd938364685738888335d 504 Pfam PF05199 GMC oxidoreductase 366 497 1.1E-39 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT55_RS14560 2fd0583599ccd938364685738888335d 504 SUPERFAMILY SSF54373 293 447 4.51E-35 T 06-07-2017 APT55_RS14560 2fd0583599ccd938364685738888335d 504 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 257 271 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT55_RS13505 3e5e43497501ae90edd4c2bdffdc62cc 209 SUPERFAMILY SSF56784 3 206 8.67E-38 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13505 3e5e43497501ae90edd4c2bdffdc62cc 209 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 168 2.4E-20 T 06-07-2017 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 APT55_RS13505 3e5e43497501ae90edd4c2bdffdc62cc 209 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 167 4.5E-16 T 06-07-2017 APT55_RS13505 3e5e43497501ae90edd4c2bdffdc62cc 209 Gene3D G3DSA:3.40.50.1000 70 179 1.5E-14 T 06-07-2017 IPR023214 HAD-like domain APT55_RS13505 3e5e43497501ae90edd4c2bdffdc62cc 209 Gene3D G3DSA:3.40.50.1000 3 20 1.5E-14 T 06-07-2017 IPR023214 HAD-like domain APT55_RS11745 e63028b1529d44322310c76174350550 136 SUPERFAMILY SSF46785 14 118 4.85E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11745 e63028b1529d44322310c76174350550 136 Pfam PF01638 HxlR-like helix-turn-helix 28 116 3.9E-32 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type APT55_RS11745 e63028b1529d44322310c76174350550 136 Gene3D G3DSA:1.10.10.10 12 116 4.0E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 Gene3D G3DSA:3.40.50.1980 277 406 1.6E-8 T 06-07-2017 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 SUPERFAMILY SSF53807 190 450 1.14E-88 T 06-07-2017 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 SUPERFAMILY SSF53807 10 160 1.14E-88 T 06-07-2017 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 Gene3D G3DSA:3.40.50.1980 24 160 3.5E-13 T 06-07-2017 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 10 454 50.574 T 06-07-2017 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 24 445 4.2E-39 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 15 461 1.6E-196 T 06-07-2017 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS03295 bb79d3a0e499016c7536fcaece27e611 467 PIRSF PIRSF000162 1 463 3.0E-212 T 06-07-2017 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS04585 9beff8c37a3addd6b0ab32ddd60eac50 118 SUPERFAMILY SSF55785 17 116 2.39E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS04585 9beff8c37a3addd6b0ab32ddd60eac50 118 SMART SM00091 3 71 6.1E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS04585 9beff8c37a3addd6b0ab32ddd60eac50 118 Gene3D G3DSA:3.30.450.20 16 95 1.7E-13 T 06-07-2017 APT55_RS04585 9beff8c37a3addd6b0ab32ddd60eac50 118 Pfam PF13426 PAS domain 17 101 1.5E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS04585 9beff8c37a3addd6b0ab32ddd60eac50 118 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 71 2.9E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS24815 3c552a6f2dc4d2572731a5c2c4eec044 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 90 5.1E-13 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS14995 70ee9ecc12e0cc0c7ec67c29ed512734 322 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 310 1.5E-115 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14995 70ee9ecc12e0cc0c7ec67c29ed512734 322 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 320 49.727 T 06-07-2017 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 APT55_RS14995 70ee9ecc12e0cc0c7ec67c29ed512734 322 Gene3D G3DSA:3.90.25.10 184 320 3.0E-41 T 06-07-2017 APT55_RS14995 70ee9ecc12e0cc0c7ec67c29ed512734 322 SUPERFAMILY SSF51735 3 316 1.34E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14995 70ee9ecc12e0cc0c7ec67c29ed512734 322 Gene3D G3DSA:3.40.50.720 3 173 4.2E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 285 8.0E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 301 8.0E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 Gene3D G3DSA:1.10.10.60 255 303 2.7E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 Pfam PF12833 Helix-turn-helix domain 224 302 1.4E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 255 297 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 SMART SM00342 218 301 3.9E-33 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 SUPERFAMILY SSF46689 255 303 8.06E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 247 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 Gene3D G3DSA:1.10.10.60 200 254 5.6E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08005 4733e82535b5d68e9bc210e5b71be0db 303 SUPERFAMILY SSF46689 202 252 3.27E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 369 5.3E-190 T 06-07-2017 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|Reactome: R-HSA-71384 APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 Gene3D G3DSA:3.40.50.720 191 309 8.4E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 SUPERFAMILY SSF50129 1 184 5.63E-71 T 06-07-2017 IPR011032 GroES-like APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 122 3.3E-25 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 Pfam PF00107 Zinc-binding dehydrogenase 197 316 5.4E-26 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 SUPERFAMILY SSF50129 318 369 2.68E-11 T 06-07-2017 IPR011032 GroES-like APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 Gene3D G3DSA:3.90.180.10 2 190 2.4E-67 T 06-07-2017 IPR011032 GroES-like APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 SUPERFAMILY SSF51735 160 334 1.23E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS19230 95d75a0c5ea20184daab17dd47b1ecc7 369 SMART SM00829 12 367 2.9E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 SUPERFAMILY SSF48208 15 298 6.32E-50 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 Pfam PF03663 Glycosyl hydrolase family 76 8 327 8.0E-59 T 06-07-2017 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 Pfam PF03422 Carbohydrate binding module (family 6) 342 452 7.2E-12 T 06-07-2017 IPR005084 Carbohydrate binding module family 6 GO:0030246 APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 Gene3D G3DSA:2.60.120.260 327 452 9.4E-24 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 Gene3D G3DSA:1.50.10.10 4 237 1.1E-46 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS10905 792da52b68654ddf506b618a136dac5c 455 SUPERFAMILY SSF49785 326 453 2.19E-23 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS01210 d221dafe589314b50509d84f72a0cfb0 123 Pfam PF15643 Papain fold toxin 2 12 108 3.6E-27 T 06-07-2017 IPR028910 Tox-PL-2 domain APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:2.160.20.10 573 661 5.3E-8 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:2.160.20.10 320 542 3.0E-31 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:2.160.20.10 667 783 9.1E-14 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:2.160.20.10 807 945 4.1E-12 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SUPERFAMILY SSF51126 574 709 4.19E-19 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27520 a92798323487cb9718c4d365275443c3 961 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 596 637 6.4E-5 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 736 776 4.0E-6 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 456 499 6.1E-7 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00722 569 740 37.0 T 06-07-2017 IPR006633 Carbohydrate-binding/sugar hydrolysis domain APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00722 346 506 2.2 T 06-07-2017 IPR006633 Carbohydrate-binding/sugar hydrolysis domain APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00722 756 876 39.0 T 06-07-2017 IPR006633 Carbohydrate-binding/sugar hydrolysis domain APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SUPERFAMILY SSF56112 29 310 2.29E-61 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00220 43 309 6.1E-50 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SUPERFAMILY SSF51126 813 941 7.95E-16 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:3.30.200.20 36 124 1.4E-17 T 06-07-2017 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Pfam PF13229 Right handed beta helix region 389 533 2.6E-21 T 06-07-2017 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Pfam PF13229 Right handed beta helix region 810 960 6.7E-19 T 06-07-2017 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Pfam PF13229 Right handed beta helix region 668 798 3.9E-23 T 06-07-2017 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 439 461 950.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 882 904 390.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 485 507 0.85 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 928 949 3800.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 905 927 5600.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 673 695 70.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 859 881 290.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 836 858 1300.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 813 835 42.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 719 741 36.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 625 647 23.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 742 764 400.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 602 624 4.8 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 579 601 1.4 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 415 437 610.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 765 787 590.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 462 484 5.3 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 531 553 5500.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SMART SM00710 508 530 1.8 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS27520 a92798323487cb9718c4d365275443c3 961 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 49 72 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SUPERFAMILY SSF51126 319 568 2.54E-42 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Gene3D G3DSA:1.10.510.10 125 308 2.3E-45 T 06-07-2017 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 SUPERFAMILY SSF51126 667 853 4.99E-20 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS27520 a92798323487cb9718c4d365275443c3 961 Pfam PF00069 Protein kinase domain 44 299 1.1E-42 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27520 a92798323487cb9718c4d365275443c3 961 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 178 190 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS03735 670ba54bb999948123ba170785ec0867 378 SUPERFAMILY SSF46548 241 371 8.55E-17 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 APT55_RS03735 670ba54bb999948123ba170785ec0867 378 Pfam PF17179 4Fe-4S dicluster domain 266 360 2.6E-34 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS03735 670ba54bb999948123ba170785ec0867 378 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS03735 670ba54bb999948123ba170785ec0867 378 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 346 357 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS03735 670ba54bb999948123ba170785ec0867 378 Gene3D G3DSA:1.10.1060.10 338 373 1.0E-11 T 06-07-2017 APT55_RS03735 670ba54bb999948123ba170785ec0867 378 Gene3D G3DSA:1.10.1060.10 249 303 1.0E-11 T 06-07-2017 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 165 183 9.6E-30 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 476 490 9.6E-30 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 379 395 9.6E-30 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 303 312 9.6E-30 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 82 95 9.6E-30 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 298 312 - T 06-07-2017 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Gene3D G3DSA:1.10.460.10 136 188 1.9E-46 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Gene3D G3DSA:1.10.460.10 453 556 1.9E-46 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Pfam PF01751 Toprim domain 5 116 2.0E-18 T 06-07-2017 IPR006171 Toprim domain APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 615 3.2E-167 T 06-07-2017 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 SMART SM00493 3 108 1.0E-17 T 06-07-2017 IPR006171 Toprim domain APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Gene3D G3DSA:2.70.20.10 341 452 1.6E-23 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Gene3D G3DSA:2.70.20.10 189 325 4.8E-23 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 SUPERFAMILY SSF56712 3 599 9.81E-157 T 06-07-2017 IPR023405 DNA topoisomerase, type IA, core domain APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 SMART SM00437 261 513 1.4E-86 T 06-07-2017 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 SMART SM00436 107 195 4.9E-34 T 06-07-2017 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Pfam PF01131 DNA topoisomerase 131 550 1.0E-111 T 06-07-2017 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 671 43.817 T 06-07-2017 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 APT55_RS01270 1c86add5d6054157afe48fd00d66afd8 713 Gene3D G3DSA:3.40.50.140 1 135 2.0E-32 T 06-07-2017 IPR006171 Toprim domain APT55_RS21290 0c9c6e19747d4fece0b8245058bc774b 176 SUPERFAMILY SSF47240 17 169 1.14E-40 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS21290 0c9c6e19747d4fece0b8245058bc774b 176 Pfam PF00210 Ferritin-like domain 31 169 6.5E-28 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS21290 0c9c6e19747d4fece0b8245058bc774b 176 PIRSF PIRSF005900 10 175 2.5E-36 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS21290 0c9c6e19747d4fece0b8245058bc774b 176 Gene3D G3DSA:1.20.1260.10 3 171 5.8E-51 T 06-07-2017 IPR012347 Ferritin-related APT55_RS21290 0c9c6e19747d4fece0b8245058bc774b 176 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 Gene3D G3DSA:3.40.50.620 3 213 2.0E-85 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 331 3.7E-111 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 4.1E-28 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 199 209 4.1E-28 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 4.1E-28 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 4.1E-28 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 Pfam PF00579 tRNA synthetases class I (W and Y) 4 288 1.0E-82 T 06-07-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 333 39.765 T 06-07-2017 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 SUPERFAMILY SSF52374 5 331 4.14E-94 T 06-07-2017 APT55_RS14425 e050fbe2d65b1376de3f99e5da816a60 336 Gene3D G3DSA:1.10.240.10 214 309 3.5E-14 T 06-07-2017 APT55_RS27855 369eff601880b6dd35977d05e87abb7e 385 Gene3D G3DSA:3.40.50.2000 200 305 3.7E-7 T 06-07-2017 APT55_RS27855 369eff601880b6dd35977d05e87abb7e 385 Pfam PF00534 Glycosyl transferases group 1 195 352 6.8E-12 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS27855 369eff601880b6dd35977d05e87abb7e 385 SUPERFAMILY SSF53756 138 378 7.33E-28 T 06-07-2017 APT55_RS27855 369eff601880b6dd35977d05e87abb7e 385 SUPERFAMILY SSF53756 3 113 7.33E-28 T 06-07-2017 APT55_RS08410 df82c6f27f2a0618ac2cd77d46caadd8 558 SUPERFAMILY SSF116734 71 269 9.32E-25 T 06-07-2017 APT55_RS08410 df82c6f27f2a0618ac2cd77d46caadd8 558 SUPERFAMILY SSF116734 354 553 7.68E-34 T 06-07-2017 APT55_RS08410 df82c6f27f2a0618ac2cd77d46caadd8 558 Pfam PF01420 Type I restriction modification DNA specificity domain 359 536 6.1E-7 T 06-07-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 SMART SM00287 504 574 1.7E-9 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 SMART SM00287 417 486 1.6E-8 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 24 49 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 Gene3D G3DSA:3.30.200.20 10 121 2.8E-17 T 06-07-2017 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 SUPERFAMILY SSF56112 10 317 1.27E-59 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 SMART SM00220 18 280 1.3E-39 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 144 156 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 Pfam PF00069 Protein kinase domain 18 236 2.3E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 Pfam PF08239 Bacterial SH3 domain 517 570 1.1E-7 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 Pfam PF08239 Bacterial SH3 domain 430 482 1.4E-9 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS02850 d16feecf68c864d5638a2d25cd0b7ffb 574 Gene3D G3DSA:1.10.510.10 122 277 6.3E-35 T 06-07-2017 APT55_RS27490 5393c8eef7dd001028af33b6f12dfd7b 642 SUPERFAMILY SSF81606 392 635 4.84E-47 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27490 5393c8eef7dd001028af33b6f12dfd7b 642 Pfam PF00481 Protein phosphatase 2C 412 628 1.2E-14 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27490 5393c8eef7dd001028af33b6f12dfd7b 642 SMART SM00332 389 634 6.2E-19 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27490 5393c8eef7dd001028af33b6f12dfd7b 642 SMART SM00331 399 636 1.3E-20 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS27490 5393c8eef7dd001028af33b6f12dfd7b 642 Gene3D G3DSA:3.60.40.10 379 635 3.6E-48 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS30200 0f089669503f7989cc71e576979a8f36 119 SUPERFAMILY SSF54427 3 115 1.09E-15 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS30200 0f089669503f7989cc71e576979a8f36 119 Gene3D G3DSA:3.10.450.50 1 115 2.0E-15 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS30200 0f089669503f7989cc71e576979a8f36 119 Pfam PF12680 SnoaL-like domain 12 86 4.3E-9 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 SUPERFAMILY SSF69360 160 288 1.1E-15 T 06-07-2017 APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 166 200 4.2E-10 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 234 268 4.0E-12 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 98 129 4.4E-8 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 268 302 7.6E-12 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 132 166 1.8E-7 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 302 336 4.2E-15 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 200 234 2.0E-9 T 06-07-2017 IPR032774 WG containing repeat APT55_RS10795 4ea77239ce92ece7bc2392b8eb1fc0da 342 Pfam PF14903 WG containing repeat 64 98 4.4E-5 T 06-07-2017 IPR032774 WG containing repeat APT55_RS25235 8cad52ceaa3bcad32b6ead406227f587 399 Pfam PF07958 Protein of unknown function (DUF1688) 7 399 7.7E-155 T 06-07-2017 IPR012469 Protein of unknown function DUF1688 APT55_RS08345 6d32dbfeeeeeb955d863ea0b1d0db7ec 453 Gene3D G3DSA:3.40.190.10 194 295 8.6E-10 T 06-07-2017 APT55_RS08345 6d32dbfeeeeeb955d863ea0b1d0db7ec 453 SUPERFAMILY SSF53850 62 306 7.28E-25 T 06-07-2017 APT55_RS08345 6d32dbfeeeeeb955d863ea0b1d0db7ec 453 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 6 31 4.2E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APT55_RS08345 6d32dbfeeeeeb955d863ea0b1d0db7ec 453 Pfam PF13379 NMT1-like family 58 317 1.5E-83 T 06-07-2017 APT55_RS29325 a14b9bfd2e49f010b9288e01a1c58655 712 Pfam PF03237 Terminase-like family 75 488 9.6E-34 T 06-07-2017 IPR004921 Terminase, large subunit APT55_RS19875 b62fb69f5b277a47c91e10c23bc66883 369 Gene3D G3DSA:1.10.443.10 186 361 6.6E-26 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19875 b62fb69f5b277a47c91e10c23bc66883 369 Pfam PF00589 Phage integrase family 188 355 4.3E-11 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19875 b62fb69f5b277a47c91e10c23bc66883 369 Pfam PF12167 Domain of unknown function (DUF3596) 1 64 4.5E-8 T 06-07-2017 IPR022000 Domain of unknown function (DUF3596) APT55_RS19875 b62fb69f5b277a47c91e10c23bc66883 369 SUPERFAMILY SSF56349 74 360 3.53E-44 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS19875 b62fb69f5b277a47c91e10c23bc66883 369 Gene3D G3DSA:1.10.150.130 75 172 7.4E-8 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS28990 a8504d4682394fbde2cf71d508a43747 204 PIRSF PIRSF001296 3 202 1.1E-70 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT55_RS28990 a8504d4682394fbde2cf71d508a43747 204 Pfam PF02669 K+-transporting ATPase, c chain 9 196 3.8E-71 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT55_RS28990 a8504d4682394fbde2cf71d508a43747 204 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 10 197 8.3E-68 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT55_RS28990 a8504d4682394fbde2cf71d508a43747 204 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 4 198 34.241 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 4 197 43.689 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 Pfam PF00574 Clp protease 17 196 8.2E-86 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 PRINTS PR00127 Clp protease catalytic subunit P signature 22 37 6.9E-53 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 PRINTS PR00127 Clp protease catalytic subunit P signature 93 110 6.9E-53 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 6.9E-53 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 PRINTS PR00127 Clp protease catalytic subunit P signature 62 82 6.9E-53 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 PRINTS PR00127 Clp protease catalytic subunit P signature 114 133 6.9E-53 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 SUPERFAMILY SSF52096 16 196 7.07E-70 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 93 104 - T 06-07-2017 IPR018215 ClpP, Ser active site APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 115 128 - T 06-07-2017 IPR033135 ClpP, histidine active site APT55_RS08790 56aae0ac0013023af11c526de6278af7 197 Gene3D G3DSA:3.90.226.10 17 195 1.5E-85 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS23560 e35e22bd30678f705770fc425e3fdf44 289 Gene3D G3DSA:2.70.98.10 15 285 3.6E-38 T 06-07-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 APT55_RS23560 e35e22bd30678f705770fc425e3fdf44 289 Pfam PF01263 Aldose 1-epimerase 28 281 6.0E-31 T 06-07-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 APT55_RS23560 e35e22bd30678f705770fc425e3fdf44 289 SUPERFAMILY SSF74650 14 287 8.79E-56 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS07010 abc401807b67df7acf315f569d869a23 311 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 35 53 - T 06-07-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT55_RS07010 abc401807b67df7acf315f569d869a23 311 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 308 9.2E-129 T 06-07-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS07010 abc401807b67df7acf315f569d869a23 311 SUPERFAMILY SSF53686 1 309 2.62E-101 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS07010 abc401807b67df7acf315f569d869a23 311 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 7 293 1.6E-65 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS07010 abc401807b67df7acf315f569d869a23 311 Gene3D G3DSA:3.40.50.1100 138 310 2.0E-77 T 06-07-2017 APT55_RS07010 abc401807b67df7acf315f569d869a23 311 Gene3D G3DSA:3.40.50.1100 40 137 8.4E-39 T 06-07-2017 APT55_RS07010 abc401807b67df7acf315f569d869a23 311 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 308 1.3E-134 T 06-07-2017 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT55_RS04615 e610f77565c925fe7c183a2ed7b71654 280 Gene3D G3DSA:1.10.3720.10 48 276 1.2E-65 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04615 e610f77565c925fe7c183a2ed7b71654 280 SUPERFAMILY SSF161098 40 268 3.14E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04615 e610f77565c925fe7c183a2ed7b71654 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 274 1.0E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS23060 ea7f88610d83425dcc6452aa23049025 37 Pfam PF05151 Photosystem II reaction centre M protein (PsbM) 1 31 5.2E-19 T 06-07-2017 IPR007826 Photosystem II PsbM GO:0009523|GO:0015979|GO:0016021|GO:0019684 APT55_RS23060 ea7f88610d83425dcc6452aa23049025 37 Hamap MF_00438 Photosystem II reaction center protein M [psbM]. 1 34 15.514 T 06-07-2017 IPR007826 Photosystem II PsbM GO:0009523|GO:0015979|GO:0016021|GO:0019684 APT55_RS23060 ea7f88610d83425dcc6452aa23049025 37 SUPERFAMILY SSF161033 1 34 7.19E-14 T 06-07-2017 APT55_RS23060 ea7f88610d83425dcc6452aa23049025 37 TIGRFAM TIGR03038 PS_II_psbM: photosystem II reaction center protein PsbM 1 33 4.2E-21 T 06-07-2017 IPR007826 Photosystem II PsbM GO:0009523|GO:0015979|GO:0016021|GO:0019684 APT55_RS19920 d4d5e92b12a5ab83f41b9384c7bb3eaf 378 Gene3D G3DSA:1.10.150.240 191 228 6.8E-4 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 SMART SM00220 19 286 8.5E-28 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Gene3D G3DSA:3.40.50.2300 411 604 8.9E-35 T 06-07-2017 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Pfam PF00069 Protein kinase domain 19 272 6.0E-33 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 SUPERFAMILY SSF56112 18 342 1.19E-51 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Pfam PF13458 Periplasmic binding protein 426 740 9.0E-26 T 06-07-2017 IPR028081 Leucine-binding protein domain APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Gene3D G3DSA:1.10.510.10 93 275 1.7E-34 T 06-07-2017 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 25 50 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Gene3D G3DSA:3.30.200.20 17 92 9.1E-15 T 06-07-2017 APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 SUPERFAMILY SSF53822 412 746 4.04E-49 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS17850 5cb14be4ebe3bfe45bdb832cd1ce18e0 754 Gene3D G3DSA:1.25.40.10 355 403 7.4E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27340 170d11818852323a0a9b8d42c556d1ad 251 Hamap MF_00490 2-phosphosulfolactate phosphatase [comB]. 5 244 31.115 T 06-07-2017 IPR022995 Probable 2-phosphosulpholactate phosphatase GO:0019295|GO:0050532 KEGG: 00680+3.1.3.71 APT55_RS27340 170d11818852323a0a9b8d42c556d1ad 251 SUPERFAMILY SSF142823 1 237 3.4E-73 T 06-07-2017 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 APT55_RS27340 170d11818852323a0a9b8d42c556d1ad 251 Gene3D G3DSA:3.90.1560.10 6 239 4.3E-77 T 06-07-2017 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 APT55_RS27340 170d11818852323a0a9b8d42c556d1ad 251 Pfam PF04029 2-phosphosulpholactate phosphatase 7 236 2.9E-81 T 06-07-2017 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 Gene3D G3DSA:3.40.190.80 212 341 9.8E-52 T 06-07-2017 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 SUPERFAMILY SSF56655 12 338 1.83E-102 T 06-07-2017 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 19 341 41.051 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 20 209 2.4E-56 T 06-07-2017 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PIRSF PIRSF500210 15 343 1.2E-119 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PIRSF PIRSF000904 15 344 2.6E-117 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 Gene3D G3DSA:3.30.540.10 19 211 4.1E-65 T 06-07-2017 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 281 293 - T 06-07-2017 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 315 340 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 164 187 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 221 248 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 82 108 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 195 218 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS20220 48a7ee148c4c74dc3a5833266701cb8d 353 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 44 71 3.6E-54 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 144 3.0E-56 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 06-07-2017 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 PIRSF PIRSF001399 1 146 5.2E-62 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 Pfam PF01220 Dehydroquinase class II 3 139 3.7E-61 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 147 71.791 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 Gene3D G3DSA:3.40.50.9100 3 144 1.4E-66 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 SUPERFAMILY SSF52304 3 145 6.28E-63 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS16185 b6a5ae3440c3492d78627bb8393d251e 147 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 1.1E-63 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 Gene3D G3DSA:1.10.10.10 156 215 5.4E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 Pfam PF08281 Sigma-70, region 4 162 213 1.8E-7 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 Pfam PF04542 Sigma-70 region 2 67 127 3.9E-8 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 Gene3D G3DSA:1.10.1740.10 56 146 6.6E-11 T 06-07-2017 APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 SUPERFAMILY SSF88946 56 139 3.06E-12 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS30270 4b3383f47388fc2c577477b779fcc127 460 SUPERFAMILY SSF88659 153 215 2.99E-9 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS12645 f12eb13c70b7c0dd261891dba62ab0a4 132 SMART SM00448 2 125 6.3E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12645 f12eb13c70b7c0dd261891dba62ab0a4 132 SUPERFAMILY SSF52172 1 129 3.7E-25 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12645 f12eb13c70b7c0dd261891dba62ab0a4 132 Gene3D G3DSA:3.40.50.2300 3 129 3.4E-29 T 06-07-2017 APT55_RS12645 f12eb13c70b7c0dd261891dba62ab0a4 132 Pfam PF00072 Response regulator receiver domain 4 118 3.3E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 193 210 - T 06-07-2017 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 Pfam PF01255 Putative undecaprenyl diphosphate synthase 27 247 4.6E-84 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 20 248 41.448 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 SUPERFAMILY SSF64005 17 243 1.2E-90 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 Gene3D G3DSA:3.40.1180.10 14 251 6.3E-103 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS11230 4cb0445fc901cc59933dc9a9bae2c333 253 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 20 247 2.7E-99 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT55_RS30665 c33d17eb5a5a022f5e6101313b6fce31 189 Gene3D G3DSA:1.10.10.60 59 97 1.4E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30665 c33d17eb5a5a022f5e6101313b6fce31 189 Pfam PF11427 Tc3 transposase 59 96 3.3E-5 T 06-07-2017 IPR025898 Tc3 transposase, DNA binding domain GO:0003677 APT55_RS30665 c33d17eb5a5a022f5e6101313b6fce31 189 Pfam PF03400 IS1 transposase 119 171 1.5E-5 T 06-07-2017 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 APT55_RS13790 00c50e01edf14d5642fbf84c39663553 112 Gene3D G3DSA:1.10.10.10 7 73 3.6E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10220 b99edccb5f3fa0f6a978e603a5c8e678 416 Pfam PF16258 Domain of unknown function (DUF4912) 98 212 4.0E-46 T 06-07-2017 IPR032585 Protein of unknown function DUF4912 APT55_RS10220 b99edccb5f3fa0f6a978e603a5c8e678 416 SMART SM00959 7 49 5.2E-7 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 APT55_RS10220 b99edccb5f3fa0f6a978e603a5c8e678 416 Gene3D G3DSA:2.40.50.140 8 47 4.0E-5 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS10220 b99edccb5f3fa0f6a978e603a5c8e678 416 Pfam PF07498 Rho termination factor, N-terminal domain 8 41 1.3E-10 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 APT55_RS06780 38f4a51b09d34530d7a24807082a19a3 42 Hamap MF_00431 Photosystem I reaction center subunit VIII [psaI]. 7 40 12.429 T 06-07-2017 IPR001302 Photosystem I PsaI, reaction centre subunit VIII GO:0009522|GO:0015979 APT55_RS06780 38f4a51b09d34530d7a24807082a19a3 42 Pfam PF00796 Photosystem I reaction centre subunit VIII 10 34 3.9E-11 T 06-07-2017 IPR001302 Photosystem I PsaI, reaction centre subunit VIII GO:0009522|GO:0015979 APT55_RS06780 38f4a51b09d34530d7a24807082a19a3 42 ProDom PD003995 PHOTOSYSTEM I SUBUNIT VIII CHLOROPLAST PLASTID REACTION CENTER MEMBRANE TRANSMEMBRANE 10 37 2.0E-4 T 06-07-2017 IPR001302 Photosystem I PsaI, reaction centre subunit VIII GO:0009522|GO:0015979 APT55_RS06780 38f4a51b09d34530d7a24807082a19a3 42 SUPERFAMILY SSF81540 1 38 1.06E-13 T 06-07-2017 IPR001302 Photosystem I PsaI, reaction centre subunit VIII GO:0009522|GO:0015979 APT55_RS06780 38f4a51b09d34530d7a24807082a19a3 42 TIGRFAM TIGR03052 PS_I_psaI: photosystem I reaction center subunit VIII 8 38 4.6E-16 T 06-07-2017 IPR001302 Photosystem I PsaI, reaction centre subunit VIII GO:0009522|GO:0015979 APT55_RS06825 90e436a88b145f3c7ce426d1c4a58feb 243 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 35 237 1.2E-47 T 06-07-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 Pfam PF14516 AAA-like domain 84 412 4.7E-128 T 06-07-2017 APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 SUPERFAMILY SSF52540 106 330 1.82E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 Gene3D G3DSA:3.40.50.300 114 250 6.4E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 SUPERFAMILY SSF47413 25 68 4.93E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 SMART SM00530 14 69 0.0096 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS31515 45f9e0c7bc8309a8ff4ff4c8902ba4a7 419 Gene3D G3DSA:1.10.260.40 27 69 1.1E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS22150 45e8912b15c09ae3aed18d82c604544e 374 SUPERFAMILY SSF53850 63 287 3.95E-33 T 06-07-2017 APT55_RS22150 45e8912b15c09ae3aed18d82c604544e 374 Gene3D G3DSA:3.40.190.10 139 268 2.8E-16 T 06-07-2017 APT55_RS22150 45e8912b15c09ae3aed18d82c604544e 374 Pfam PF09084 NMT1/THI5 like 68 280 5.4E-42 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS00605 74519cf6fdb793d6cace5f7d42080ec7 236 Gene3D G3DSA:1.25.40.10 151 211 1.8E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00605 74519cf6fdb793d6cace5f7d42080ec7 236 SUPERFAMILY SSF48452 154 212 1.72E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00605 74519cf6fdb793d6cace5f7d42080ec7 236 Pfam PF13431 Tetratricopeptide repeat 170 197 3.0E-5 T 06-07-2017 APT55_RS04845 ea049163cca29af95181f27b049dd5b7 294 SUPERFAMILY SSF159501 33 289 6.41E-75 T 06-07-2017 APT55_RS04845 ea049163cca29af95181f27b049dd5b7 294 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 48 258 4.4E-76 T 06-07-2017 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN APT55_RS04845 ea049163cca29af95181f27b049dd5b7 294 PIRSF PIRSF020419 1 294 6.3E-37 T 06-07-2017 IPR016773 Ferric uptake regulator, CjrA, predicted APT55_RS26320 10fcc9f51b7ed10f7abadce93b1c188e 174 ProDom PD005947 PHOTOSYSTEM SUBUNIT I XI REACTION CENTER MEMBRANE PSI PHOTOSYNTHESIS V 25 87 8.0E-15 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS26320 10fcc9f51b7ed10f7abadce93b1c188e 174 Gene3D G3DSA:1.20.1240.10 21 173 6.6E-47 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS26320 10fcc9f51b7ed10f7abadce93b1c188e 174 Pfam PF02605 Photosystem I reaction centre subunit XI 22 164 1.4E-49 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS26320 10fcc9f51b7ed10f7abadce93b1c188e 174 SUPERFAMILY SSF81568 22 171 7.85E-44 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS20605 51c367c69c832f96f823600cd99df07b 379 SUPERFAMILY SSF53756 4 371 9.03E-65 T 06-07-2017 APT55_RS20605 51c367c69c832f96f823600cd99df07b 379 Pfam PF13439 Glycosyltransferase Family 4 18 195 5.0E-10 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS20605 51c367c69c832f96f823600cd99df07b 379 Pfam PF00534 Glycosyl transferases group 1 196 341 3.4E-26 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS20605 51c367c69c832f96f823600cd99df07b 379 Gene3D G3DSA:3.40.50.2000 202 337 6.0E-22 T 06-07-2017 APT55_RS03375 fa6ebb5ff74e289837487a71560f551d 335 Gene3D G3DSA:1.10.600.10 167 230 1.8E-12 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS03375 fa6ebb5ff74e289837487a71560f551d 335 SUPERFAMILY SSF48576 31 284 2.01E-14 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS03375 fa6ebb5ff74e289837487a71560f551d 335 Pfam PF00494 Squalene/phytoene synthase 107 283 5.5E-13 T 06-07-2017 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 SUPERFAMILY SSF50621 215 368 7.95E-28 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 SUPERFAMILY SSF51419 20 249 2.62E-41 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 11 377 1.1E-157 T 06-07-2017 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 Gene3D G3DSA:2.40.37.10 195 373 2.7E-34 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 PIRSF PIRSF038941 1 379 1.4E-151 T 06-07-2017 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 APT55_RS26220 3259efa6abb851c16b39f0c64c0021ac 379 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 266 353 4.4E-10 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT55_RS25700 9e9aa6badc6bfc282cf369df6dee984b 390 Pfam PF00483 Nucleotidyl transferase 2 246 5.9E-55 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT55_RS25700 9e9aa6badc6bfc282cf369df6dee984b 390 Gene3D G3DSA:3.90.550.10 1 322 2.3E-77 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25700 9e9aa6badc6bfc282cf369df6dee984b 390 SUPERFAMILY SSF53448 1 322 1.03E-69 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27705 b3176c004d81c42741f6b575ef82ab90 260 Pfam PF04012 PspA/IM30 family 2 225 2.0E-65 T 06-07-2017 IPR007157 PspA/IM30 APT55_RS13905 2cb6e23fb781efc4e9e4f702881329f9 182 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 98 5.2E-8 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS13905 2cb6e23fb781efc4e9e4f702881329f9 182 Gene3D G3DSA:2.30.110.10 3 126 1.9E-15 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS13905 2cb6e23fb781efc4e9e4f702881329f9 182 SUPERFAMILY SSF50475 5 134 2.68E-11 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS09135 62c4818e5199f7b7991bc758ce8137a7 436 SUPERFAMILY SSF51556 75 391 3.36E-86 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS09135 62c4818e5199f7b7991bc758ce8137a7 436 Gene3D G3DSA:2.30.40.10 373 399 4.3E-5 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS09135 62c4818e5199f7b7991bc758ce8137a7 436 Pfam PF07969 Amidohydrolase family 210 396 9.2E-22 T 06-07-2017 IPR013108 Amidohydrolase 3 APT55_RS09135 62c4818e5199f7b7991bc758ce8137a7 436 Gene3D G3DSA:3.20.20.140 87 372 2.9E-91 T 06-07-2017 APT55_RS09135 62c4818e5199f7b7991bc758ce8137a7 436 Gene3D G3DSA:2.30.40.10 43 86 1.1E-4 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 109 694 8.4E-177 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Gene3D G3DSA:2.70.150.10 182 288 1.6E-25 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 389 395 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 237 251 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 585 604 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 522 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 387 401 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 608 620 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 533 543 4.9E-26 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 163 663 1.6E-85 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Gene3D G3DSA:3.40.1110.10 406 513 4.8E-22 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Gene3D G3DSA:3.40.50.1000 361 403 5.0E-49 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Gene3D G3DSA:3.40.50.1000 514 653 5.0E-49 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 126 693 1.7E-179 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 SUPERFAMILY SSF81665 129 191 1.96E-12 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 SUPERFAMILY SSF81665 288 379 1.96E-12 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 SUPERFAMILY SSF56784 443 691 1.46E-55 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 SUPERFAMILY SSF56784 386 405 1.46E-55 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 SUPERFAMILY SSF81653 191 287 2.22E-24 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 585 601 2.3E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 616 641 2.3E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 558 574 2.3E-6 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Pfam PF00702 haloacid dehalogenase-like hydrolase 383 599 1.3E-46 T 06-07-2017 APT55_RS23420 176036bdaf3eab80a538f9a6382f8b6d 700 Pfam PF00122 E1-E2 ATPase 160 378 2.2E-60 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SUPERFAMILY SSF48452 606 681 6.01E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SUPERFAMILY SSF48452 461 576 6.01E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Gene3D G3DSA:1.25.40.10 610 679 1.5E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Gene3D G3DSA:1.25.40.10 457 555 1.5E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SMART SM00220 8 260 4.3E-43 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Gene3D G3DSA:1.10.510.10 74 267 4.8E-40 T 06-07-2017 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Gene3D G3DSA:3.30.200.20 4 73 2.6E-20 T 06-07-2017 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Pfam PF00515 Tetratricopeptide repeat 506 539 9.0E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SMART SM00028 646 679 8.9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SMART SM00028 608 641 46.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SMART SM00028 506 539 8.6E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 Pfam PF00069 Protein kinase domain 8 251 6.3E-41 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS24365 8b3582920cba37eb2ac6cbdb97951d6c 699 SUPERFAMILY SSF56112 4 278 1.89E-63 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Gene3D G3DSA:3.30.70.100 5 93 1.5E-23 T 06-07-2017 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 SUPERFAMILY SSF54975 6 94 7.41E-22 T 06-07-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Pfam PF07503 HypF finger 161 193 2.6E-17 T 06-07-2017 IPR011125 Zinc finger, HypF-type GO:0008270 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Pfam PF07503 HypF finger 111 144 1.7E-15 T 06-07-2017 IPR011125 Zinc finger, HypF-type GO:0008270 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 ProSitePatterns PS00150 Acylphosphatase signature 1. 14 24 - T 06-07-2017 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Gene3D G3DSA:3.90.870.10 203 382 2.8E-44 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 PIRSF PIRSF006256 5 762 1.2E-300 T 06-07-2017 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Pfam PF00708 Acylphosphatase 8 93 1.3E-20 T 06-07-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 12 754 8.5E-269 T 06-07-2017 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 Pfam PF01300 Telomere recombination 213 387 1.8E-52 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 APT55_RS03700 efceccb38005d6c2629169aba6fcc817 763 SUPERFAMILY SSF55821 178 395 3.66E-50 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS08545 464064077f80450661382d3ef6e43d84 187 Pfam PF06103 Bacterial protein of unknown function (DUF948) 11 93 2.1E-8 T 06-07-2017 IPR009293 Uncharacterised protein family UPF0478 APT55_RS16585 33589354af0c4d6ada39469f40ee1506 185 SUPERFAMILY SSF52980 2 182 4.34E-17 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16585 33589354af0c4d6ada39469f40ee1506 185 Pfam PF05685 Putative restriction endonuclease 22 179 7.0E-28 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS16585 33589354af0c4d6ada39469f40ee1506 185 Gene3D G3DSA:3.90.1570.10 6 182 4.3E-17 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS08735 89c03a3a52bc145681f79c9f34694802 110 SUPERFAMILY SSF52821 3 104 9.82E-26 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08735 89c03a3a52bc145681f79c9f34694802 110 Pfam PF00581 Rhodanese-like domain 7 100 7.8E-11 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08735 89c03a3a52bc145681f79c9f34694802 110 SMART SM00450 6 105 8.6E-17 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08735 89c03a3a52bc145681f79c9f34694802 110 Gene3D G3DSA:3.40.250.10 2 106 4.9E-27 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 SMART SM01340 196 324 1.8E-29 T 06-07-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Pfam PF08676 MutL C terminal dimerisation domain 368 490 2.4E-16 T 06-07-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 SUPERFAMILY SSF54211 228 323 5.31E-23 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 SUPERFAMILY SSF55874 3 213 1.31E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 3 532 21.135 T 06-07-2017 IPR020667 DNA mismatch repair protein, MutL GO:0006298 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 SUPERFAMILY SSF118116 366 534 2.48E-32 T 06-07-2017 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 SMART SM00853 370 492 3.2E-26 T 06-07-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 120 3.5E-12 T 06-07-2017 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Gene3D G3DSA:3.30.230.10 229 323 1.9E-24 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 229 323 3.3E-22 T 06-07-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 Gene3D G3DSA:3.30.565.10 4 211 8.1E-61 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 06-07-2017 IPR014762 DNA mismatch repair, conserved site APT55_RS15235 a9939ad40963820c35d38b07dcc8bae5 545 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 4 304 2.9E-76 T 06-07-2017 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Pfam PF01333 Apocytochrome F, C-terminal 199 316 1.3E-55 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Pfam PF16639 Apocytochrome F, N-terminal 33 187 3.1E-79 T 06-07-2017 IPR024094 Cytochrome f large domain APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 SUPERFAMILY SSF103431 278 316 7.19E-16 T 06-07-2017 IPR024058 Cytochrome f transmembrane anchor APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Gene3D G3DSA:1.20.5.700 282 316 4.2E-19 T 06-07-2017 IPR024058 Cytochrome f transmembrane anchor APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Gene3D G3DSA:2.60.40.830 33 199 1.7E-98 T 06-07-2017 IPR024094 Cytochrome f large domain APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Gene3D G3DSA:2.60.40.830 260 281 1.7E-98 T 06-07-2017 IPR024094 Cytochrome f large domain APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Gene3D G3DSA:2.40.50.100 203 259 7.0E-23 T 06-07-2017 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 41 60 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 186 209 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 28 39 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 276 296 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 82 101 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 144 164 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 165 185 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 297 314 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 61 81 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 102 122 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 255 275 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 123 143 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 PRINTS PR00610 Cytochrome F signature 234 254 2.0E-136 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 SUPERFAMILY SSF49441 33 200 4.84E-92 T 06-07-2017 IPR024094 Cytochrome f large domain APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 SUPERFAMILY SSF49441 262 281 4.84E-92 T 06-07-2017 IPR024094 Cytochrome f large domain APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 Hamap MF_00610 Cytochrome f [petA]. 1 315 58.221 T 06-07-2017 IPR002325 Cytochrome f GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361 APT55_RS27630 2f43ba11f3b35a51a6212d05b46eaba1 316 SUPERFAMILY SSF51246 202 262 2.76E-19 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Gene3D G3DSA:1.10.3810.10 218 388 4.5E-62 T 06-07-2017 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 SUPERFAMILY SSF53955 198 411 3.37E-67 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 221 754 4.1E-156 T 06-07-2017 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Gene3D G3DSA:2.60.200.20 43 150 2.7E-18 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Pfam PF00498 FHA domain 65 139 2.5E-15 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Pfam PF00912 Transglycosylase 208 385 2.6E-56 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 SUPERFAMILY SSF49879 37 147 3.83E-21 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Pfam PF00905 Penicillin binding protein transpeptidase domain 478 744 1.2E-40 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 SMART SM00240 64 125 7.7E-8 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 Gene3D G3DSA:3.40.710.10 389 754 2.0E-109 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 SUPERFAMILY SSF56601 420 754 3.09E-106 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS26040 ef1980191ecc206a92e3e1f004f7910b 755 SUPERFAMILY SSF56601 367 389 3.09E-106 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 Pfam PF00593 TonB dependent receptor 518 787 9.0E-40 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 72 788 3.2E-118 T 06-07-2017 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 Gene3D G3DSA:2.40.170.20 194 788 1.8E-92 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 SUPERFAMILY SSF56935 452 788 4.47E-106 T 06-07-2017 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 SUPERFAMILY SSF56935 72 425 4.47E-106 T 06-07-2017 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 Pfam PF07715 TonB-dependent Receptor Plug Domain 88 193 4.1E-22 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 72 788 4.8E-118 T 06-07-2017 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 APT55_RS24995 ba11d62541287aa980a5d923b8ac2d61 788 Gene3D G3DSA:2.170.130.10 72 193 1.1E-34 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS01825 fcfa45a30de977ef675eaf7a76753f35 839 Gene3D G3DSA:3.20.110.10 37 364 4.1E-72 T 06-07-2017 IPR027291 Glycoside hydrolase 38/57, N-terminal domain APT55_RS01825 fcfa45a30de977ef675eaf7a76753f35 839 Pfam PF03065 Glycosyl hydrolase family 57 140 311 3.0E-16 T 06-07-2017 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 APT55_RS01825 fcfa45a30de977ef675eaf7a76753f35 839 Pfam PF12055 Domain of unknown function (DUF3536) 376 657 5.4E-128 T 06-07-2017 IPR021923 Protein of unknown function DUF3536 APT55_RS01825 fcfa45a30de977ef675eaf7a76753f35 839 SUPERFAMILY SSF88713 37 364 4.45E-71 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS08265 73109295ef5ba2cde2e43d811cda9331 191 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 146 1.0E-51 T 06-07-2017 IPR005265 Uncharacterised protein family UPF0093 APT55_RS08265 73109295ef5ba2cde2e43d811cda9331 191 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 2 145 1.2E-57 T 06-07-2017 IPR014351 Conserved hypothetical protein CHP00701 APT55_RS10810 d244290b216468ad3a6c39fd47a6f673 105 PIRSF PIRSF005894 1 105 5.4E-48 T 06-07-2017 IPR014434 Monothiol glutaredoxin APT55_RS10810 d244290b216468ad3a6c39fd47a6f673 105 Pfam PF00462 Glutaredoxin 16 80 2.8E-23 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT55_RS10810 d244290b216468ad3a6c39fd47a6f673 105 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 1.1E-45 T 06-07-2017 IPR004480 Monothiol glutaredoxin-related APT55_RS10810 d244290b216468ad3a6c39fd47a6f673 105 Gene3D G3DSA:3.40.30.10 6 100 8.4E-37 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS10810 d244290b216468ad3a6c39fd47a6f673 105 SUPERFAMILY SSF52833 3 100 2.14E-36 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS26805 68a11c0c3ab23041b3880bdae3cc9618 221 Pfam PF11139 Sap, sulfolipid-1-addressing protein 9 212 1.4E-19 T 06-07-2017 IPR021315 Glycolipid exporter Gap/Sap APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 Gene3D G3DSA:3.40.640.10 40 250 2.6E-58 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 Gene3D G3DSA:3.90.1150.10 251 344 2.0E-24 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 SUPERFAMILY SSF53383 21 342 4.98E-70 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 5 344 7.5E-98 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 3 347 52.126 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT55_RS22340 a8909744977ae4002666ff7516a51e94 347 Pfam PF00155 Aminotransferase class I and II 25 342 2.0E-47 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS12070 ed1a153866308e1624c2c91b80a93c5f 144 Pfam PF09557 Domain of unknown function (DUF2382) 22 69 2.9E-6 T 06-07-2017 IPR019060 Domain of unknown function DUF2382 APT55_RS07305 5cf1139303b417cb519305df3c0cf907 124 Pfam PF07845 Protein of unknown function (DUF1636) 6 122 1.2E-37 T 06-07-2017 IPR012863 Protein of unknown function DUF1636 APT55_RS07305 5cf1139303b417cb519305df3c0cf907 124 SUPERFAMILY SSF52833 2 91 2.91E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS07485 6419c4a9e22a2f722a1dcef22b90429c 225 Pfam PF07444 Ycf66 protein N-terminus 11 85 1.0E-31 T 06-07-2017 IPR010004 Uncharacterised protein family Ycf66 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Gene3D G3DSA:3.40.50.10140 8 118 3.8E-19 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Gene3D G3DSA:1.25.40.10 520 681 7.3E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Pfam PF13424 Tetratricopeptide repeat 599 665 2.9E-19 T 06-07-2017 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 SMART SM00028 592 625 1.5E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 SMART SM00028 634 667 0.0039 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Gene3D G3DSA:3.40.50.300 177 287 7.7E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27185 55582884c9bc246e6819414aa0196512 700 SUPERFAMILY SSF52200 3 116 3.92E-24 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 SUPERFAMILY SSF48452 553 687 2.69E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Pfam PF13374 Tetratricopeptide repeat 556 590 0.011 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 PRINTS PR00381 Kinesin light chain signature 525 543 1.2E-11 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 PRINTS PR00381 Kinesin light chain signature 667 688 1.2E-11 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 PRINTS PR00381 Kinesin light chain signature 588 605 1.2E-11 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 PRINTS PR00381 Kinesin light chain signature 632 652 1.2E-11 T 06-07-2017 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Pfam PF13676 TIR domain 9 116 2.4E-27 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS27185 55582884c9bc246e6819414aa0196512 700 SUPERFAMILY SSF52540 160 426 1.5E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27185 55582884c9bc246e6819414aa0196512 700 Pfam PF00931 NB-ARC domain 184 433 2.3E-21 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 SMART SM00490 283 364 4.8E-11 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 SMART SM00487 20 231 2.2E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 Gene3D G3DSA:3.40.50.300 17 209 2.7E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 Pfam PF00270 DEAD/DEAH box helicase 26 195 2.5E-25 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 Gene3D G3DSA:3.40.50.300 255 369 3.0E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 Pfam PF00271 Helicase conserved C-terminal domain 257 364 6.5E-12 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 SUPERFAMILY SSF52540 231 374 2.44E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26255 e505639956fc87c71577c88e8f743e60 730 SUPERFAMILY SSF52540 35 197 2.44E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31825 37c80c04a56e4327be3910627ed0bb16 398 Pfam PF12704 MacB-like periplasmic core domain 23 241 1.1E-18 T 06-07-2017 IPR025857 MacB-like periplasmic core domain APT55_RS31825 37c80c04a56e4327be3910627ed0bb16 398 Pfam PF02687 FtsX-like permease family 277 389 1.5E-16 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 Pfam PF00176 SNF2 family N-terminal domain 942 1209 2.3E-58 T 06-07-2017 IPR000330 SNF2-related, N-terminal domain GO:0005524 APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 SUPERFAMILY SSF52540 888 1138 9.55E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 Gene3D G3DSA:3.40.50.300 1217 1364 1.2E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 SMART SM00490 1248 1330 2.3E-25 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 Pfam PF00271 Helicase conserved C-terminal domain 1222 1330 3.2E-21 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 SMART SM00487 925 1107 1.7E-27 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 Gene3D G3DSA:3.40.50.300 921 1096 4.1E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 SUPERFAMILY SSF52540 1139 1383 1.18E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08450 ead76edae9be0cd20d20a7ff722b6b48 1386 Pfam PF08455 Bacterial SNF2 helicase associated 575 918 1.3E-6 T 06-07-2017 IPR013663 Helicase, SWF/SNF/SWI type, bacterial APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 Gene3D G3DSA:3.20.20.30 1 311 1.1E-145 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 Gene3D G3DSA:3.20.20.30 350 438 1.1E-145 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 SUPERFAMILY SSF51679 4 438 1.26E-142 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 Pfam PF00296 Luciferase-like monooxygenase 17 390 1.8E-67 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 PIRSF PIRSF000337 2 446 5.4E-170 T 06-07-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT55_RS02805 5541489f74b91b57083ce9f6aa6bc68c 451 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 432 2.1E-188 T 06-07-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Gene3D G3DSA:3.30.200.20 5 119 3.9E-19 T 06-07-2017 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Gene3D G3DSA:1.25.40.10 405 511 4.7E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Pfam PF13432 Tetratricopeptide repeat 515 576 3.1E-9 T 06-07-2017 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 12 37 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00220 6 269 5.0E-33 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Gene3D G3DSA:1.10.510.10 120 292 8.4E-31 T 06-07-2017 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SUPERFAMILY SSF48452 406 579 2.09E-39 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SUPERFAMILY SSF56112 3 312 4.39E-55 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Gene3D G3DSA:1.25.40.10 512 592 6.2E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Pfam PF00069 Protein kinase domain 6 256 1.1E-35 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 Pfam PF07719 Tetratricopeptide repeat 475 507 4.4E-5 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00028 441 474 210.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00028 475 508 7.3E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00028 543 576 1.6E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00028 407 440 0.17 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23585 ef5c40cdc1e8cca88ae9c1b43845b384 615 SMART SM00028 509 542 8.5E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 SUPERFAMILY SSF75217 96 255 9.81E-45 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 Pfam PF00588 SpoU rRNA Methylase family 111 249 1.0E-37 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 SUPERFAMILY SSF55315 1 100 6.12E-27 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 Gene3D G3DSA:3.30.1330.30 1 99 1.7E-31 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 Gene3D G3DSA:3.40.1280.10 109 256 4.2E-49 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 29 100 1.7E-12 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 APT55_RS10130 a135726288f85a59c60b01f7ec7828ae 258 SMART SM00967 29 103 1.0E-11 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 Gene3D G3DSA:3.40.190.10 45 163 4.1E-24 T 06-07-2017 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PIRSF PIRSF019574 8 366 3.2E-104 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 Gene3D G3DSA:3.40.190.10 164 315 9.3E-53 T 06-07-2017 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 SUPERFAMILY SSF53850 44 363 2.03E-87 T 06-07-2017 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 145 162 - T 06-07-2017 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 65 86 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 65 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 140 156 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 222 241 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 109 122 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 107 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 185 204 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 3.4E-42 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS16845 1b628aef81d28e1eae52b21497820e16 366 Pfam PF13416 Bacterial extracellular solute-binding protein 58 316 9.2E-38 T 06-07-2017 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Gene3D G3DSA:3.10.20.30 558 653 3.7E-27 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 576 646 8.9E-12 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 SUPERFAMILY SSF55124 303 374 2.06E-19 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 434 450 - T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 133 289 3.3E-47 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 389 501 3.9E-14 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 SUPERFAMILY SSF56014 387 500 1.06E-31 T 06-07-2017 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 603 611 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Gene3D G3DSA:3.30.413.10 387 500 6.7E-33 T 06-07-2017 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 PRINTS PR00397 Sirohaem Fe-binding site signature 390 408 6.8E-12 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 PRINTS PR00397 Sirohaem Fe-binding site signature 434 452 6.8E-12 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 62 122 6.2E-19 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 312 375 5.3E-18 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 SUPERFAMILY SSF54292 566 653 5.9E-23 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 64 454 1.9E-71 T 06-07-2017 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Gene3D G3DSA:3.30.413.10 133 296 7.4E-51 T 06-07-2017 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Gene3D G3DSA:3.90.480.10 305 373 3.2E-47 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 Gene3D G3DSA:3.90.480.10 62 130 3.2E-47 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 SUPERFAMILY SSF56014 133 308 2.62E-50 T 06-07-2017 APT55_RS12095 81fd4c14ecf9dc2f7b4831a7167a3452 654 SUPERFAMILY SSF55124 9 130 1.26E-26 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 PIRSF PIRSF027377 1 131 4.5E-51 T 06-07-2017 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 SUPERFAMILY SSF55620 8 122 5.41E-32 T 06-07-2017 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 Pfam PF14489 QueF-like protein 53 130 4.6E-32 T 06-07-2017 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 131 51.105 T 06-07-2017 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 22 130 3.7E-43 T 06-07-2017 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT55_RS17120 3bbe6d1d777ce3fea53c056310025bfc 131 Gene3D G3DSA:3.30.1130.10 16 130 9.9E-40 T 06-07-2017 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 PIRSF PIRSF000512 1 339 1.5E-155 T 06-07-2017 IPR016229 Thiamine-phosphate synthase, cyanobacterial/bacterial GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 SUPERFAMILY SSF51391 134 334 3.27E-70 T 06-07-2017 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 Hamap MF_01327 Thiamine-phosphate synthase [thiE]. 1 335 42.774 T 06-07-2017 IPR016229 Thiamine-phosphate synthase, cyanobacterial/bacterial GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 141 326 2.1E-72 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 139 335 28.268 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 Pfam PF02581 Thiamine monophosphate synthase/TENI 141 317 1.2E-67 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS21525 bcac8598900811a50428f745551f6e36 351 Gene3D G3DSA:3.20.20.70 136 336 7.3E-77 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS13495 4ee571d704745b20f6e7c581cbe8dcb2 250 Pfam PF00427 Phycobilisome Linker polypeptide 38 160 1.8E-42 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS13495 4ee571d704745b20f6e7c581cbe8dcb2 250 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 38 162 1.0E-52 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS13495 4ee571d704745b20f6e7c581cbe8dcb2 250 PIRSF PIRSF005898 1 246 3.1E-69 T 06-07-2017 IPR016470 Phycobilisome linker protein GO:0015979|GO:0030089 APT55_RS18540 c5c5365a595ef23af0b4ff3f6bbabed2 550 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 269 9.1E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18540 c5c5365a595ef23af0b4ff3f6bbabed2 550 Gene3D G3DSA:1.10.3720.10 297 545 3.4E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18540 c5c5365a595ef23af0b4ff3f6bbabed2 550 Gene3D G3DSA:1.10.3720.10 17 275 1.9E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18540 c5c5365a595ef23af0b4ff3f6bbabed2 550 SUPERFAMILY SSF161098 10 272 3.18E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18540 c5c5365a595ef23af0b4ff3f6bbabed2 550 SUPERFAMILY SSF161098 288 545 1.02E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 Gene3D G3DSA:1.20.120.420 8 159 6.2E-53 T 06-07-2017 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 34 337 7.7E-128 T 06-07-2017 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 9 335 2.3E-140 T 06-07-2017 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 Gene3D G3DSA:3.40.50.10470 160 345 1.4E-72 T 06-07-2017 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 Pfam PF01008 Initiation factor 2 subunit family 48 337 9.8E-89 T 06-07-2017 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 5 347 40.428 T 06-07-2017 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 APT55_RS19070 2d1acdffc1bb4fce19bc116a50d4312c 348 SUPERFAMILY SSF100950 6 344 2.51E-123 T 06-07-2017 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 Pfam PF00881 Nitroreductase family 326 503 5.7E-22 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 Pfam PF00881 Nitroreductase family 94 230 4.5E-10 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 375 503 4.4E-25 T 06-07-2017 IPR020051 SagB-type dehydrogenase domain APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 68 233 7.2E-35 T 06-07-2017 IPR020051 SagB-type dehydrogenase domain APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 SUPERFAMILY SSF55469 322 352 6.46E-29 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 SUPERFAMILY SSF55469 393 506 6.46E-29 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 Gene3D G3DSA:3.40.109.10 316 352 8.7E-35 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 Gene3D G3DSA:3.40.109.10 393 505 8.7E-35 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 Gene3D G3DSA:3.40.109.10 94 226 6.6E-14 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14740 575814feb8e11c3cbe7e234e4088c9b7 509 SUPERFAMILY SSF55469 94 232 8.14E-15 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 Pfam PF00072 Response regulator receiver domain 7 120 1.6E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 SMART SM00448 5 120 3.2E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 240 413 6.7E-27 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 SUPERFAMILY SSF52172 3 154 7.68E-26 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 Gene3D G3DSA:3.30.70.1230 240 418 4.5E-35 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 SMART SM00044 118 399 1.1E-5 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 Gene3D G3DSA:3.40.50.2300 2 147 6.3E-28 T 06-07-2017 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 Gene3D G3DSA:1.25.40.10 435 483 2.8E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10035 c7b8c13c693114d3e8a68b70b71d58a4 496 SUPERFAMILY SSF55073 240 418 2.2E-48 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS22845 92fc5151072d01a0fa5ecd6d43136ef1 198 Pfam PF00849 RNA pseudouridylate synthase 5 151 2.7E-17 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS22845 92fc5151072d01a0fa5ecd6d43136ef1 198 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 42 56 - T 06-07-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT55_RS22845 92fc5151072d01a0fa5ecd6d43136ef1 198 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 9 181 3.6E-59 T 06-07-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT55_RS22845 92fc5151072d01a0fa5ecd6d43136ef1 198 SUPERFAMILY SSF55120 6 192 1.2E-43 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS10135 98703c00ab650b56904e3bbc3aa39a8e 201 Gene3D G3DSA:3.90.1570.10 3 145 1.2E-15 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS10135 98703c00ab650b56904e3bbc3aa39a8e 201 Pfam PF05685 Putative restriction endonuclease 11 194 1.4E-36 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS10135 98703c00ab650b56904e3bbc3aa39a8e 201 SUPERFAMILY SSF52980 2 148 5.15E-15 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS02720 37957052ce2a0e6c8f3e79a5b0f4cc77 223 Gene3D G3DSA:3.40.50.150 1 220 1.7E-68 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS02720 37957052ce2a0e6c8f3e79a5b0f4cc77 223 SUPERFAMILY SSF53335 10 220 2.97E-42 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS02720 37957052ce2a0e6c8f3e79a5b0f4cc77 223 Pfam PF01596 O-methyltransferase 24 205 9.7E-45 T 06-07-2017 IPR002935 O-methyltransferase, family 3 GO:0008171 APT55_RS06960 31ea9269d60ee15137c8242c62a6ebb7 266 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 208 6.5E-36 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS06960 31ea9269d60ee15137c8242c62a6ebb7 266 PIRSF PIRSF003092 1 265 1.2E-92 T 06-07-2017 IPR025501 ATP binding protein MinD APT55_RS06960 31ea9269d60ee15137c8242c62a6ebb7 266 SUPERFAMILY SSF52540 1 263 6.35E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06960 31ea9269d60ee15137c8242c62a6ebb7 266 Gene3D G3DSA:3.40.50.300 1 238 5.7E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06960 31ea9269d60ee15137c8242c62a6ebb7 266 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 262 6.6E-123 T 06-07-2017 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 APT55_RS00405 76136442d23b76f50330c2294a4fb034 273 Gene3D G3DSA:3.10.50.40 138 239 7.2E-6 T 06-07-2017 APT55_RS00405 76136442d23b76f50330c2294a4fb034 273 SUPERFAMILY SSF109998 3 156 7.06E-8 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS00405 76136442d23b76f50330c2294a4fb034 273 SUPERFAMILY SSF54534 136 220 3.04E-6 T 06-07-2017 APT55_RS00405 76136442d23b76f50330c2294a4fb034 273 Pfam PF13145 PPIC-type PPIASE domain 120 221 2.1E-6 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 SUPERFAMILY SSF52402 1 220 1.46E-60 T 06-07-2017 APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 PIRSF PIRSF006293 1 222 1.7E-72 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 206 7.0E-69 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 Gene3D G3DSA:3.40.50.620 2 219 2.6E-72 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 Pfam PF06508 Queuosine biosynthesis protein QueC 3 213 1.3E-73 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT55_RS04565 5bbdf4fee3c9a90973a5ff392c77c743 230 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 219 51.684 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT55_RS07150 d0944ae8e873053e4294e77c35d4e8d9 344 SUPERFAMILY SSF56112 98 306 4.08E-16 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS07150 d0944ae8e873053e4294e77c35d4e8d9 344 Gene3D G3DSA:3.90.1200.10 148 323 1.1E-7 T 06-07-2017 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 Gene3D G3DSA:2.30.110.10 417 568 4.1E-32 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 SUPERFAMILY SSF56281 11 250 5.22E-29 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 SUPERFAMILY SSF52218 258 405 1.09E-40 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 Pfam PF01613 Flavin reductase like domain 428 558 1.2E-14 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 Pfam PF00258 Flavodoxin 262 390 1.4E-10 T 06-07-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 ProSitePatterns PS00201 Flavodoxin signature. 262 278 - T 06-07-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 Gene3D G3DSA:3.40.50.360 260 400 1.6E-43 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 SUPERFAMILY SSF50475 418 568 3.78E-32 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 SMART SM00903 426 573 4.9E-23 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 Gene3D G3DSA:3.60.15.10 6 250 5.9E-74 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26175 c91522760ea02d773841c1c5f2621d2b 573 SMART SM00849 42 231 8.2E-16 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Pfam PF00512 His Kinase A (phospho-acceptor) domain 405 471 8.8E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 SMART SM00388 404 471 1.8E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 SMART SM00387 517 648 1.6E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 SUPERFAMILY SSF55874 460 646 3.8E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Gene3D G3DSA:3.30.450.20 204 299 1.0E-4 T 06-07-2017 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Gene3D G3DSA:3.30.565.10 457 647 7.2E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 SUPERFAMILY SSF47384 389 472 9.22E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Pfam PF00672 HAMP domain 317 385 5.2E-7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 601 2.0E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 608 626 2.0E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 587 2.0E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 645 2.0E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 518 645 1.5E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24200 3cd3336f4fb9eb386f1a240cd9b4e344 678 Gene3D G3DSA:1.10.287.130 396 456 1.9E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS17085 8774bca607146ee8be7c6f15d15663ad 201 Gene3D G3DSA:3.90.550.10 11 186 3.3E-27 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS17085 8774bca607146ee8be7c6f15d15663ad 201 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 11 197 2.7E-67 T 06-07-2017 IPR018641 Transferase 1, rSAM/selenodomain-associated APT55_RS17085 8774bca607146ee8be7c6f15d15663ad 201 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 51 164 4.1E-32 T 06-07-2017 IPR018641 Transferase 1, rSAM/selenodomain-associated APT55_RS17085 8774bca607146ee8be7c6f15d15663ad 201 SUPERFAMILY SSF53448 12 200 7.31E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 PIRSF PIRSF002181 1 150 2.4E-50 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 10 144 1.4E-64 T 06-07-2017 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 17 143 28.952 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 Gene3D G3DSA:3.90.1180.10 7 143 4.4E-63 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 Pfam PF00572 Ribosomal protein L13 17 140 6.1E-57 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 ProSitePatterns PS00783 Ribosomal protein L13 signature. 107 129 - T 06-07-2017 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 APT55_RS09180 f32a8914fc13c8a5bbd6be88d239638f 151 SUPERFAMILY SSF52161 8 145 6.15E-59 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT55_RS15690 035e5e27888a9fab4903903b35eda6dc 116 Pfam PF06868 Protein of unknown function (DUF1257) 21 111 8.7E-18 T 06-07-2017 IPR009666 Uncharacterised protein family Ycf35 APT55_RS02730 e47ff9c0d91af800335948dedb6fdd8d 178 SUPERFAMILY SSF51197 12 176 4.26E-45 T 06-07-2017 APT55_RS02730 e47ff9c0d91af800335948dedb6fdd8d 178 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 17 176 8.2E-19 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like APT55_RS02730 e47ff9c0d91af800335948dedb6fdd8d 178 Gene3D G3DSA:2.60.120.590 15 176 2.8E-27 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 Gene3D G3DSA:1.20.1260.10 2 157 3.0E-67 T 06-07-2017 IPR012347 Ferritin-related APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 ProSitePatterns PS00818 Dps protein family signature 1. 39 55 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 PIRSF PIRSF005900 1 158 5.4E-48 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 ProSitePatterns PS00819 Dps protein family signature 2. 65 79 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 SUPERFAMILY SSF47240 6 157 2.4E-49 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 Pfam PF00210 Ferritin-like domain 19 157 2.0E-29 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 63 79 4.0E-11 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 134 152 4.0E-11 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS21385 274b9e42299c9e7628c73b98ed3060b4 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 39 55 4.0E-11 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 SUPERFAMILY SSF55021 189 275 2.71E-24 T 06-07-2017 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 224 231 - T 06-07-2017 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 163 185 - T 06-07-2017 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 Gene3D G3DSA:3.40.190.10 1 95 1.3E-25 T 06-07-2017 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 Pfam PF01842 ACT domain 200 262 3.6E-11 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 Pfam PF00800 Prephenate dehydratase 5 188 2.3E-56 T 06-07-2017 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 Gene3D G3DSA:3.30.70.260 191 276 5.2E-29 T 06-07-2017 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 SUPERFAMILY SSF53850 4 189 8.68E-53 T 06-07-2017 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 PIRSF PIRSF001500 1 278 2.7E-80 T 06-07-2017 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT55_RS16570 082b92f416b17555ae5d4145262d80b6 281 Gene3D G3DSA:3.40.190.10 96 175 9.0E-27 T 06-07-2017 APT55_RS24455 1ae88869f43078b9685d128b48d7a0ba 393 Gene3D G3DSA:1.50.10.10 3 386 6.3E-131 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS24455 1ae88869f43078b9685d128b48d7a0ba 393 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 35 367 3.8E-89 T 06-07-2017 APT55_RS24455 1ae88869f43078b9685d128b48d7a0ba 393 SUPERFAMILY SSF48208 9 388 9.18E-101 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 TIGRFAM TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent 22 768 9.0E-230 T 06-07-2017 IPR013345 Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0006260|GO:0008998|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.20.70.20 222 375 3.6E-170 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.20.70.20 22 140 3.6E-170 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.20.70.20 664 709 3.6E-170 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.20.70.20 407 582 3.6E-170 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.90.1390.10 710 769 2.9E-24 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 Gene3D G3DSA:3.90.1390.10 583 636 2.9E-24 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 SUPERFAMILY SSF51998 403 769 1.4E-214 T 06-07-2017 APT55_RS09805 15b9ac6507e2b6526575cb9fb8c41326 776 SUPERFAMILY SSF51998 24 371 1.4E-214 T 06-07-2017 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 140 174 - T 06-07-2017 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 Gene3D G3DSA:3.30.70.100 179 266 1.2E-23 T 06-07-2017 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 Gene3D G3DSA:2.30.30.60 126 173 1.1E-17 T 06-07-2017 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 Pfam PF00924 Mechanosensitive ion channel 72 267 7.7E-47 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 SUPERFAMILY SSF82689 179 279 4.05E-28 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 SUPERFAMILY SSF50182 110 173 3.6E-18 T 06-07-2017 IPR010920 LSM domain APT55_RS14120 c96f0166ab7e4d7f54b8d85cf0a2b72d 339 SUPERFAMILY SSF82861 24 108 6.54E-9 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT55_RS27235 548265ac4cd2e8fe1047f34557d2cde6 300 SUPERFAMILY SSF101478 2 296 1.96E-78 T 06-07-2017 IPR005502 ADP-ribosylation/Crystallin J1 APT55_RS27235 548265ac4cd2e8fe1047f34557d2cde6 300 Pfam PF03747 ADP-ribosylglycohydrolase 9 275 5.1E-71 T 06-07-2017 IPR005502 ADP-ribosylation/Crystallin J1 APT55_RS20025 687642a12e4d721aab805abebc72fec5 398 TIGRFAM TIGR00937 2A51: chromate efflux transporter 17 387 4.3E-98 T 06-07-2017 IPR014047 Chromate transporter, long chain APT55_RS20025 687642a12e4d721aab805abebc72fec5 398 Pfam PF02417 Chromate transporter 219 389 3.0E-38 T 06-07-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT55_RS20025 687642a12e4d721aab805abebc72fec5 398 Pfam PF02417 Chromate transporter 12 175 2.0E-36 T 06-07-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT55_RS20025 687642a12e4d721aab805abebc72fec5 398 PIRSF PIRSF004810 1 396 1.2E-112 T 06-07-2017 IPR014047 Chromate transporter, long chain APT55_RS25040 f3b0a21388a958b1c127847568682f95 492 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 294 354 8.3E-13 T 06-07-2017 IPR006260 TonB, C-terminal GO:0006810 APT55_RS25040 f3b0a21388a958b1c127847568682f95 492 SUPERFAMILY SSF74653 294 343 5.49E-9 T 06-07-2017 APT55_RS25040 f3b0a21388a958b1c127847568682f95 492 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 295 353 7.8E-10 T 06-07-2017 IPR006260 TonB, C-terminal GO:0006810 APT55_RS25040 f3b0a21388a958b1c127847568682f95 492 Gene3D G3DSA:3.30.1150.10 288 344 3.4E-10 T 06-07-2017 APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 Gene3D G3DSA:3.40.50.300 2 188 1.4E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 4 437 1.2E-150 T 06-07-2017 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 237 425 4.6E-41 T 06-07-2017 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 178 1.1E-22 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 1 427 41.169 T 06-07-2017 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 SUPERFAMILY SSF52540 1 191 2.11E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 Gene3D G3DSA:3.40.50.880 236 440 2.5E-25 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS22290 26e0195d175c1fc60ce35140fffeea2d 446 SUPERFAMILY SSF52317 234 438 1.57E-32 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS26750 82f5f4fdf0899296e1bb0fd4279b04be 108 Pfam PF01909 Nucleotidyltransferase domain 12 85 6.0E-12 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS26750 82f5f4fdf0899296e1bb0fd4279b04be 108 SUPERFAMILY SSF81301 9 103 3.54E-18 T 06-07-2017 APT55_RS26750 82f5f4fdf0899296e1bb0fd4279b04be 108 Gene3D G3DSA:3.30.460.10 8 91 1.3E-19 T 06-07-2017 APT55_RS27975 8f26b61c04a1ce66fd16ca150e814540 501 SUPERFAMILY SSF53720 21 496 3.4E-149 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS27975 8f26b61c04a1ce66fd16ca150e814540 501 Pfam PF00171 Aldehyde dehydrogenase family 30 487 2.3E-154 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS27975 8f26b61c04a1ce66fd16ca150e814540 501 Gene3D G3DSA:3.40.309.10 283 465 1.0E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS27975 8f26b61c04a1ce66fd16ca150e814540 501 Gene3D G3DSA:3.40.605.10 23 282 1.2E-77 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00448 9 122 4.0E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00448 700 813 1.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF52172 701 818 7.54E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF55785 333 441 2.09E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00387 559 682 3.2E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:3.30.565.10 520 679 4.2E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 681 1.0E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF00072 Response regulator receiver domain 11 122 1.7E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF00072 Response regulator receiver domain 702 813 1.6E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF47384 445 517 1.28E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 326 441 9.4E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00065 157 308 8.8E-33 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00091 322 388 1.6E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF00989 PAS fold 326 426 5.0E-9 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF55874 508 681 9.04E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF00512 His Kinase A (phospho-acceptor) domain 452 516 1.2E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Pfam PF01590 GAF domain 158 298 2.0E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:3.40.50.2300 701 819 1.2E-29 T 06-07-2017 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 625 9.2E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 666 679 9.2E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 639 9.2E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 660 9.2E-19 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:3.40.50.2300 6 137 3.8E-39 T 06-07-2017 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF55781 136 308 1.48E-60 T 06-07-2017 IPR029016 GAF domain-like APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SUPERFAMILY SSF52172 8 141 1.05E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:3.30.450.40 143 300 6.4E-40 T 06-07-2017 IPR029016 GAF domain-like APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 SMART SM00388 450 517 3.3E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:3.30.450.20 312 433 3.5E-18 T 06-07-2017 APT55_RS03585 0ca0946d8f63fdf88039b73bb03e100e 827 Gene3D G3DSA:1.10.287.130 446 513 2.4E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Gene3D G3DSA:3.30.200.20 33 109 1.6E-14 T 06-07-2017 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 579 617 2.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 622 658 1.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 412 448 6.8E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 537 574 5.1E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 454 490 5.2E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 370 407 1.4E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00400 WD domain, G-beta repeat 497 533 0.0023 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 604 618 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Gene3D G3DSA:2.130.10.10 358 659 1.9E-108 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 42 66 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Gene3D G3DSA:1.10.510.10 110 293 3.7E-36 T 06-07-2017 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 PRINTS PR00320 G protein beta WD-40 repeat signature 646 660 2.6E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 PRINTS PR00320 G protein beta WD-40 repeat signature 562 576 2.6E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 PRINTS PR00320 G protein beta WD-40 repeat signature 604 618 2.6E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 494 533 5.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 368 407 2.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 536 575 1.1E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 452 491 6.4E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 578 617 5.0E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 620 659 2.2E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SMART SM00320 410 449 2.2E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 Pfam PF00069 Protein kinase domain 36 285 3.7E-34 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 520 534 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SUPERFAMILY SSF56112 32 362 1.75E-55 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 394 408 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS18165 aae56d5a6647c7d5b27dddbd19b80bde 662 SUPERFAMILY SSF50978 365 659 1.04E-103 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS00460 81ee5fd643c03c159f83c98ef5cd2119 216 SMART SM00235 62 210 6.1E-4 T 06-07-2017 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 APT55_RS00460 81ee5fd643c03c159f83c98ef5cd2119 216 Gene3D G3DSA:3.40.390.10 55 212 8.1E-13 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 APT55_RS00460 81ee5fd643c03c159f83c98ef5cd2119 216 SUPERFAMILY SSF55486 60 211 7.59E-19 T 06-07-2017 APT55_RS22200 ef75489d7c6c6c927c4979d4bd7ac79c 158 Gene3D G3DSA:3.10.180.10 2 130 1.0E-4 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 SUPERFAMILY SSF52518 10 188 5.36E-63 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Gene3D G3DSA:3.40.50.970 367 567 4.6E-74 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 SUPERFAMILY SSF52467 199 374 8.63E-66 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Gene3D G3DSA:3.40.50.1220 203 366 1.0E-70 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 180 1.2E-56 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 13 575 3.2E-265 T 06-07-2017 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 552 1.6E-52 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Gene3D G3DSA:3.40.50.970 11 189 1.3E-73 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 208 342 4.7E-51 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 SUPERFAMILY SSF52518 382 581 5.5E-68 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 440 459 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT55_RS16225 3e98d9f6d865718fc5b4e8b1cef50e6a 612 Pfam PF13240 zinc-ribbon domain 591 611 1.2E-6 T 06-07-2017 IPR026870 Zinc-ribbon domain APT55_RS25535 456fc296d500b2a3472cf6f68c96e032 288 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 64 242 9.7E-33 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS25535 456fc296d500b2a3472cf6f68c96e032 288 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 67 238 4.0E-50 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 5.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 5.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 5.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 5.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SMART SM00065 142 314 4.7E-23 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SUPERFAMILY SSF55781 121 314 5.67E-35 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Pfam PF00512 His Kinase A (phospho-acceptor) domain 344 416 1.7E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Gene3D G3DSA:3.30.565.10 402 578 4.2E-50 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SMART SM00388 344 416 1.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Gene3D G3DSA:1.10.287.130 339 401 1.2E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Pfam PF01590 GAF domain 143 304 5.6E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Gene3D G3DSA:3.30.450.40 120 169 5.3E-7 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Gene3D G3DSA:3.30.450.40 255 320 3.5E-13 T 06-07-2017 IPR029016 GAF domain-like APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 579 7.5E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SUPERFAMILY SSF47384 329 418 7.46E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SUPERFAMILY SSF55874 405 578 1.26E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00770 fb6a33dc6dfa257c2dc1b77b4c34a65d 581 SMART SM00387 468 580 4.6E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 Gene3D G3DSA:1.10.260.40 473 533 2.2E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 SUPERFAMILY SSF54862 7 65 2.18E-10 T 06-07-2017 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 SMART SM00530 484 534 0.0072 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 SUPERFAMILY SSF47413 482 533 5.07E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 Gene3D G3DSA:3.30.70.20 8 60 2.7E-8 T 06-07-2017 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 Pfam PF13560 Helix-turn-helix domain 488 533 5.8E-8 T 06-07-2017 APT55_RS11580 83fc18400f718ca0a17c00d4eee47251 534 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS15750 070821cc799113c76f8be97fc9163519 740 SMART SM00387 630 740 3.0E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15750 070821cc799113c76f8be97fc9163519 740 SMART SM01080 31 293 1.7E-55 T 06-07-2017 IPR007890 CHASE2 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 PIRSF PIRSF037347 4 739 1.3E-64 T 06-07-2017 IPR017181 Signal transduction histidine kinase, CHASE2/PAS sensor domain-containing, predicted APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Gene3D G3DSA:3.30.565.10 570 738 3.1E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 631 738 3.0E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Gene3D G3DSA:3.30.450.20 402 522 4.9E-6 T 06-07-2017 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 SUPERFAMILY SSF55874 573 738 8.51E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Pfam PF05226 CHASE2 domain 20 285 8.6E-47 T 06-07-2017 IPR007890 CHASE2 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 SUPERFAMILY SSF47384 507 585 1.8E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 SMART SM00388 519 584 4.4E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 681 7.0E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 720 7.0E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 695 7.0E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Gene3D G3DSA:1.10.287.130 523 569 1.3E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15750 070821cc799113c76f8be97fc9163519 740 Pfam PF00512 His Kinase A (phospho-acceptor) domain 520 584 2.2E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09755 223450a1cad14280943db65723678032 459 SUPERFAMILY SSF52540 16 273 2.17E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09755 223450a1cad14280943db65723678032 459 Pfam PF07728 AAA domain (dynein-related subfamily) 35 188 6.5E-16 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 APT55_RS09755 223450a1cad14280943db65723678032 459 TIGRFAM TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN 12 274 2.4E-116 T 06-07-2017 IPR013462 Gas vesicle protein GvpN GO:0000166|GO:0005524|GO:0031411|GO:0031412 APT55_RS09755 223450a1cad14280943db65723678032 459 Gene3D G3DSA:3.40.50.300 23 205 2.3E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 SUPERFAMILY SSF52540 3 226 8.6E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 Gene3D G3DSA:3.40.50.300 256 486 2.0E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 Gene3D G3DSA:3.40.50.300 2 226 1.7E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 SMART SM00382 283 472 0.23 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 SMART SM00382 27 230 2.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 SUPERFAMILY SSF52540 269 481 4.44E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 Pfam PF00005 ABC transporter 278 410 1.1E-10 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS27610 8e73509cf3c656c5e57c995763b64271 496 Pfam PF00005 ABC transporter 19 173 7.1E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 Pfam PF02769 AIR synthase related protein, C-terminal domain 183 292 6.7E-16 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 Gene3D G3DSA:3.90.650.10 190 300 6.6E-7 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 SUPERFAMILY SSF56042 155 307 5.83E-24 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 SUPERFAMILY SSF55326 27 147 2.36E-25 T 06-07-2017 APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 PIRSF PIRSF036540 1 317 4.1E-112 T 06-07-2017 IPR011413 Uncharacterised conserved protein UCP036540 APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 Gene3D G3DSA:3.30.1330.10 32 147 3.1E-25 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 Pfam PF00586 AIR synthase related protein, N-terminal domain 41 145 1.1E-17 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS15250 783beccd5c9696a09f87564318bfdecd 317 TIGRFAM TIGR04049 AIR_rel_sll0787: AIR synthase-related protein, sll0787 family 2 315 4.6E-137 T 06-07-2017 IPR024030 AIR synthase-related protein, sll0787 family APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 Gene3D G3DSA:3.40.50.300 16 210 9.2E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 SUPERFAMILY SSF90002 248 335 3.4E-22 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 248 335 1.9E-22 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 Gene3D G3DSA:3.30.1220.10 222 335 3.7E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 SUPERFAMILY SSF52540 16 231 8.76E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 SMART SM00833 248 335 4.6E-17 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07310 08d6949f9a42ae231f6a09b29713d6f9 345 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 17 193 3.4E-56 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 298 305 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1058 0.0 T 06-07-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.40.50.20 538 653 6.4E-60 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF56059 128 401 1.33E-105 T 06-07-2017 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 165 179 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF56059 678 939 3.05E-105 T 06-07-2017 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF52440 1 127 1.28E-48 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.30.1490.20 143 200 1.8E-21 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.30.1490.20 692 749 1.9E-25 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF48108 396 553 1.83E-55 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 714 728 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SMART SM01096 423 546 1.1E-71 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.30.470.20 750 940 8.0E-79 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.30.470.20 201 400 5.2E-79 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:1.10.1030.10 401 537 5.2E-55 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1075 13.662 T 06-07-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.174 T 06-07-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF52440 555 677 1.58E-47 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 298 327 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 205 224 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 169 181 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 240 257 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.2E-66 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SMART SM00851 961 1047 1.2E-34 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 844 851 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 546 1.1E-43 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.40.50.1380 943 1076 3.9E-41 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Pfam PF02142 MGS-like domain 962 1047 4.9E-21 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Gene3D G3DSA:3.40.50.20 4 108 1.7E-43 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 678 880 1.2E-38 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 2.9E-71 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT55_RS27315 4d6c2bfbf2180ddd4b3c7319f86f1534 1078 SUPERFAMILY SSF52335 943 1076 1.7E-38 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 642 7.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 628 7.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 663 7.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 PRINTS PR00344 Bacterial sensor protein C-terminal signature 670 683 7.9E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 SMART SM00387 544 684 3.6E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Pfam PF05231 MASE1 16 330 1.7E-38 T 06-07-2017 IPR007895 MASE1 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 683 1.8E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Pfam PF00512 His Kinase A (phospho-acceptor) domain 402 498 3.3E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Gene3D G3DSA:1.10.287.130 398 428 7.3E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Gene3D G3DSA:1.10.287.130 466 495 7.3E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 SUPERFAMILY SSF55874 486 571 1.08E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 SUPERFAMILY SSF55874 598 684 1.08E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 Gene3D G3DSA:3.30.565.10 497 684 2.6E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 SUPERFAMILY SSF47384 467 496 1.73E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09435 1736c28981ff370a0372ba605cad526d 684 SUPERFAMILY SSF47384 396 437 1.73E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04225 7adc133798e18a1c719a3966d454ce93 99 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 3 23 2.1E-8 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 APT55_RS04225 7adc133798e18a1c719a3966d454ce93 99 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 23 42 2.1E-8 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 APT55_RS04225 7adc133798e18a1c719a3966d454ce93 99 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 51 1.1E-21 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT55_RS04225 7adc133798e18a1c719a3966d454ce93 99 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 98 19.71 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT55_RS04225 7adc133798e18a1c719a3966d454ce93 99 Pfam PF02416 mttA/Hcf106 family 6 57 1.9E-22 T 06-07-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 APT55_RS18480 684c89b2609cd10bbb4184a04e021891 351 SMART SM00052 97 340 7.6E-16 T 06-07-2017 IPR001633 EAL domain APT55_RS18480 684c89b2609cd10bbb4184a04e021891 351 Pfam PF00563 EAL domain 106 337 3.9E-50 T 06-07-2017 IPR001633 EAL domain APT55_RS18480 684c89b2609cd10bbb4184a04e021891 351 SUPERFAMILY SSF141868 105 337 1.57E-52 T 06-07-2017 IPR001633 EAL domain APT55_RS18480 684c89b2609cd10bbb4184a04e021891 351 Gene3D G3DSA:3.20.20.450 107 338 5.1E-50 T 06-07-2017 IPR001633 EAL domain APT55_RS07230 71b27c50a4e5cefd5ec6d49764f5f106 231 Hamap MF_00931 Aldehyde decarbonylase. 1 229 50.17 T 06-07-2017 IPR022612 Long-chain fatty aldehyde decarbonylase GO:0071771 KEGG: 00073+4.1.99.5|MetaCyc: PWY-282|MetaCyc: PWY-6622|MetaCyc: PWY-7032 APT55_RS07230 71b27c50a4e5cefd5ec6d49764f5f106 231 TIGRFAM TIGR04059 Ald_deCOase: long-chain fatty aldehyde decarbonylase 10 228 7.2E-125 T 06-07-2017 IPR022612 Long-chain fatty aldehyde decarbonylase GO:0071771 KEGG: 00073+4.1.99.5|MetaCyc: PWY-282|MetaCyc: PWY-6622|MetaCyc: PWY-7032 APT55_RS07230 71b27c50a4e5cefd5ec6d49764f5f106 231 SUPERFAMILY SSF47240 9 227 6.57E-83 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS07230 71b27c50a4e5cefd5ec6d49764f5f106 231 Pfam PF11266 Protein of unknown function (DUF3066) 11 228 2.0E-121 T 06-07-2017 IPR022612 Long-chain fatty aldehyde decarbonylase GO:0071771 KEGG: 00073+4.1.99.5|MetaCyc: PWY-282|MetaCyc: PWY-6622|MetaCyc: PWY-7032 APT55_RS07230 71b27c50a4e5cefd5ec6d49764f5f106 231 Gene3D G3DSA:1.20.1260.10 14 229 8.3E-121 T 06-07-2017 IPR012347 Ferritin-related APT55_RS31440 35c38953ba8ef7a5f2698bc0ba656ccf 325 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 310 23.606 T 06-07-2017 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 APT55_RS31440 35c38953ba8ef7a5f2698bc0ba656ccf 325 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 3 295 1.3E-68 T 06-07-2017 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 APT55_RS31440 35c38953ba8ef7a5f2698bc0ba656ccf 325 Pfam PF01867 CRISPR associated protein Cas1 4 284 1.1E-82 T 06-07-2017 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 SUPERFAMILY SSF52172 5 131 1.38E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 SMART SM00448 6 119 7.6E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 SUPERFAMILY SSF46894 146 216 1.9E-22 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 Gene3D G3DSA:3.40.50.2300 4 160 2.3E-35 T 06-07-2017 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 1.2E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 Pfam PF00072 Response regulator receiver domain 8 119 5.0E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 Gene3D G3DSA:1.10.10.10 161 216 3.8E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS29015 86f5c54057ec0df086690a6e32ecd42b 226 SMART SM00421 153 210 1.1E-27 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 Gene3D G3DSA:1.10.230.10 239 325 9.3E-36 T 06-07-2017 IPR016143 Citrate synthase-like, small alpha subdomain Reactome: R-HSA-163765|Reactome: R-HSA-75105 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 SUPERFAMILY SSF48256 5 379 1.44E-134 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 Pfam PF00285 Citrate synthase, C-terminal domain 8 362 4.8E-130 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 Gene3D G3DSA:1.10.580.10 13 238 1.8E-81 T 06-07-2017 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 8 379 1.9E-130 T 06-07-2017 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 252 272 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 199 227 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 332 346 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 312 328 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 177 192 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PRINTS PR00143 Citrate synthase signature 128 141 1.8E-45 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 PIRSF PIRSF001369 1 380 3.8E-155 T 06-07-2017 IPR024176 Citrate synthase, bacterial-type APT55_RS23260 96f4b16b376e929c0932f1afea89dd67 380 ProSitePatterns PS00480 Citrate synthase signature. 259 271 - T 06-07-2017 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT55_RS01565 3ddd36d9d24b26908f336a2756a05822 182 SMART SM00448 4 117 1.1E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01565 3ddd36d9d24b26908f336a2756a05822 182 SUPERFAMILY SSF52172 4 129 1.71E-27 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01565 3ddd36d9d24b26908f336a2756a05822 182 Gene3D G3DSA:3.40.50.2300 3 117 4.4E-29 T 06-07-2017 APT55_RS01565 3ddd36d9d24b26908f336a2756a05822 182 Gene3D G3DSA:3.40.47.10 118 175 1.8E-4 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS01565 3ddd36d9d24b26908f336a2756a05822 182 Pfam PF00072 Response regulator receiver domain 6 118 1.5E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03025 bd81b661ba194ea1cbc71f0703455327 590 Pfam PF00395 S-layer homology domain 66 108 2.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS03025 bd81b661ba194ea1cbc71f0703455327 590 SUPERFAMILY SSF56935 230 497 1.67E-8 T 06-07-2017 APT55_RS03025 bd81b661ba194ea1cbc71f0703455327 590 Pfam PF04966 Carbohydrate-selective porin, OprB family 132 590 5.7E-78 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 Gene3D G3DSA:3.30.200.20 10 132 3.2E-28 T 06-07-2017 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 142 154 - T 06-07-2017 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 SUPERFAMILY SSF56112 8 317 8.23E-57 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 Pfam PF00069 Protein kinase domain 15 273 1.7E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 SMART SM00219 15 256 1.5E-7 T 06-07-2017 IPR020635 Tyrosine-protein kinase, catalytic domain GO:0004713|GO:0006468 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 21 45 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS20955 79dbd10706e82c57c5deccb65e5ef809 618 Gene3D G3DSA:1.10.510.10 133 274 1.1E-25 T 06-07-2017 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 Pfam PF00072 Response regulator receiver domain 11 122 1.4E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 SUPERFAMILY SSF109604 144 318 3.14E-34 T 06-07-2017 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 Gene3D G3DSA:3.40.50.2300 6 137 1.4E-44 T 06-07-2017 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 Pfam PF13487 HD domain 207 267 1.6E-17 T 06-07-2017 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 Gene3D G3DSA:1.10.3210.10 150 307 1.8E-17 T 06-07-2017 IPR006674 HD domain APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 SMART SM00448 9 122 5.6E-46 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 SMART SM00471 152 287 1.4E-7 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS21215 ee43135b7c84509b50ea69341d27bb47 342 SUPERFAMILY SSF52172 6 136 1.31E-43 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Gene3D G3DSA:3.30.1490.20 145 199 5.8E-21 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Gene3D G3DSA:3.30.470.20 200 306 8.8E-46 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 132 304 9.0E-73 T 06-07-2017 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 SUPERFAMILY SSF52440 2 129 9.21E-36 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 SUPERFAMILY SSF56059 131 316 2.27E-49 T 06-07-2017 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Gene3D G3DSA:3.40.50.20 2 138 1.5E-44 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Hamap MF_00162 Glutathione synthetase [gshB]. 1 322 134.795 T 06-07-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 318 1.7E-126 T 06-07-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT55_RS01455 4cf5569660ae13a39908bc8c000255e2 322 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 128 5.1E-39 T 06-07-2017 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 Gene3D G3DSA:3.30.565.10 287 452 2.2E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 SMART SM00387 344 454 2.8E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 SMART SM00388 233 301 2.0E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 SUPERFAMILY SSF47384 218 302 6.47E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 Pfam PF05227 CHASE3 domain 42 176 4.8E-15 T 06-07-2017 IPR007891 CHASE3 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 301 1.8E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 SUPERFAMILY SSF55874 291 452 1.24E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 Gene3D G3DSA:1.10.287.130 226 286 6.9E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 450 8.0E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 9.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 9.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 451 9.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21920 f8206fc202f7b8f96c8c0640ee2f270c 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 9.9E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22485 89237c421a396c9c6e3f05bef22fa1f4 154 Gene3D G3DSA:3.10.129.10 18 151 1.2E-36 T 06-07-2017 IPR029069 HotDog domain APT55_RS22485 89237c421a396c9c6e3f05bef22fa1f4 154 Pfam PF03061 Thioesterase superfamily 37 119 2.1E-12 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 APT55_RS22485 89237c421a396c9c6e3f05bef22fa1f4 154 SUPERFAMILY SSF54637 18 150 4.6E-34 T 06-07-2017 IPR029069 HotDog domain APT55_RS22485 89237c421a396c9c6e3f05bef22fa1f4 154 PIRSF PIRSF003230 17 154 3.2E-24 T 06-07-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 06-07-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 3.5E-41 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 3.5E-41 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 3.5E-41 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 3.5E-41 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 3.5E-41 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 326 1.6E-136 T 06-07-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 3.6E-68 T 06-07-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 SMART SM00846 2 153 5.5E-90 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 Gene3D G3DSA:3.40.50.720 2 161 8.4E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 Gene3D G3DSA:3.30.360.10 162 316 3.5E-74 T 06-07-2017 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 153 1.1E-58 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 PIRSF PIRSF000149 1 336 1.3E-131 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 SUPERFAMILY SSF55347 153 315 6.24E-70 T 06-07-2017 APT55_RS00530 27ce0499a35604688d6ca25ed6c8202b 337 SUPERFAMILY SSF51735 2 152 1.69E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS10030 773864c6d7649865be80eba9853af12b 340 Gene3D G3DSA:3.40.50.2300 1 106 1.1E-21 T 06-07-2017 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 SUPERFAMILY SSF52738 154 338 3.27E-57 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 340 30.201 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 PIRSF PIRSF000876 1 340 2.6E-98 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 Pfam PF01339 CheB methylesterase 159 335 1.6E-52 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 SUPERFAMILY SSF52172 1 106 3.84E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10030 773864c6d7649865be80eba9853af12b 340 Pfam PF00072 Response regulator receiver domain 3 105 2.5E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 SMART SM00448 1 119 5.6E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10030 773864c6d7649865be80eba9853af12b 340 Gene3D G3DSA:3.40.50.180 153 337 3.0E-63 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 229 341 2.4E-4 T 06-07-2017 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 PIRSF PIRSF036428 1 393 3.3E-136 T 06-07-2017 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 Gene3D G3DSA:3.40.1010.10 2 107 3.5E-24 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 7 195 1.4E-43 T 06-07-2017 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 Gene3D G3DSA:3.40.50.150 232 340 2.4E-16 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 SUPERFAMILY SSF53335 206 370 2.89E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 SUPERFAMILY SSF53790 4 194 6.8E-41 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 223 344 1.5E-35 T 06-07-2017 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 Gene3D G3DSA:3.30.950.10 108 199 1.2E-21 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS00595 cf51aae8594954d2d4adb908838fae0a 393 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 191 4.2E-26 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS25735 ea18b2a62966eccec781b7c890afc2e0 359 Gene3D G3DSA:1.10.101.10 11 73 9.9E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS25735 ea18b2a62966eccec781b7c890afc2e0 359 Pfam PF01471 Putative peptidoglycan binding domain 19 72 1.4E-6 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS25735 ea18b2a62966eccec781b7c890afc2e0 359 SUPERFAMILY SSF47090 10 72 6.28E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS07680 90aef2ee472d39fa8de13012c9a24400 231 SMART SM01207 13 209 7.4E-82 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS07680 90aef2ee472d39fa8de13012c9a24400 231 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 10 217 20.399 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS07680 90aef2ee472d39fa8de13012c9a24400 231 Pfam PF02660 Glycerol-3-phosphate acyltransferase 14 208 2.1E-49 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS07680 90aef2ee472d39fa8de13012c9a24400 231 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 9 219 8.9E-55 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT55_RS29840 73e45ff8e2a2ce76ff8c815e541dc4f6 869 SUPERFAMILY SSF52540 641 842 8.4E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29840 73e45ff8e2a2ce76ff8c815e541dc4f6 869 Pfam PF07728 AAA domain (dynein-related subfamily) 660 807 1.5E-22 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 APT55_RS29840 73e45ff8e2a2ce76ff8c815e541dc4f6 869 SMART SM00382 655 817 5.8E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS29840 73e45ff8e2a2ce76ff8c815e541dc4f6 869 Gene3D G3DSA:3.40.50.300 652 814 9.6E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22075 7d432aaa5a438b0bf65ebed7e1f862fb 365 Pfam PF07728 AAA domain (dynein-related subfamily) 81 222 5.5E-33 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 APT55_RS22075 7d432aaa5a438b0bf65ebed7e1f862fb 365 SUPERFAMILY SSF52540 60 323 2.79E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22075 7d432aaa5a438b0bf65ebed7e1f862fb 365 Gene3D G3DSA:3.40.50.300 63 229 4.4E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05865 722a19ec1600a41650d78b3d51764acd 386 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 2 385 32.821 T 06-07-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS05865 722a19ec1600a41650d78b3d51764acd 386 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 384 2.0E-108 T 06-07-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS05865 722a19ec1600a41650d78b3d51764acd 386 Pfam PF02684 Lipid-A-disaccharide synthetase 5 379 9.0E-102 T 06-07-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS05865 722a19ec1600a41650d78b3d51764acd 386 SUPERFAMILY SSF53756 12 350 1.69E-37 T 06-07-2017 APT55_RS05865 722a19ec1600a41650d78b3d51764acd 386 Gene3D G3DSA:3.40.50.2000 164 293 8.9E-5 T 06-07-2017 APT55_RS26850 5c0567f849d8a6bcf883cbc3f5490757 121 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 104 1.5E-27 T 06-07-2017 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV APT55_RS28980 0f73e331757958948346f8d2bd069e31 389 Gene3D G3DSA:1.20.1250.20 210 386 1.8E-9 T 06-07-2017 APT55_RS28980 0f73e331757958948346f8d2bd069e31 389 Gene3D G3DSA:1.20.1250.20 15 187 7.8E-19 T 06-07-2017 APT55_RS28980 0f73e331757958948346f8d2bd069e31 389 SUPERFAMILY SSF103473 12 386 2.75E-40 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS28980 0f73e331757958948346f8d2bd069e31 389 Pfam PF07690 Major Facilitator Superfamily 20 353 2.7E-24 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS14005 a1c79f64e396d8d610e6d2125fbf92a5 92 SUPERFAMILY SSF111337 7 84 1.14E-26 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT55_RS14005 a1c79f64e396d8d610e6d2125fbf92a5 92 Pfam PF02547 Queuosine biosynthesis protein 8 85 3.0E-27 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT55_RS14005 a1c79f64e396d8d610e6d2125fbf92a5 92 Gene3D G3DSA:3.40.1780.10 7 65 9.1E-19 T 06-07-2017 APT55_RS14005 a1c79f64e396d8d610e6d2125fbf92a5 92 Gene3D G3DSA:2.40.10.240 67 84 1.6E-4 T 06-07-2017 APT55_RS18020 4d5d3bf50f04d9af0d296b7c739b5865 212 Gene3D G3DSA:3.40.50.150 40 202 1.2E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18020 4d5d3bf50f04d9af0d296b7c739b5865 212 Pfam PF08241 Methyltransferase domain 67 157 9.0E-13 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS18020 4d5d3bf50f04d9af0d296b7c739b5865 212 SUPERFAMILY SSF53335 22 202 3.24E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09450 c34f279cb8a4f2f19feae87af1d0183b 135 Hamap MF_00589 Photosystem II 12 kDa extrinsic protein [psbU]. 1 135 33.736 T 06-07-2017 IPR010527 Photosystem II PsbU, oxygen evolving complex GO:0009523|GO:0009654|GO:0015979|GO:0019898|GO:0042549 APT55_RS09450 c34f279cb8a4f2f19feae87af1d0183b 135 SUPERFAMILY SSF81585 40 135 5.17E-26 T 06-07-2017 APT55_RS09450 c34f279cb8a4f2f19feae87af1d0183b 135 Pfam PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) 42 134 5.1E-41 T 06-07-2017 IPR010527 Photosystem II PsbU, oxygen evolving complex GO:0009523|GO:0009654|GO:0015979|GO:0019898|GO:0042549 APT55_RS09450 c34f279cb8a4f2f19feae87af1d0183b 135 Gene3D G3DSA:1.10.150.320 41 123 1.0E-28 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF81653 137 247 9.68E-27 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 670 686 1.5E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 526 544 1.5E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 702 727 1.5E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 642 658 1.5E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 353 359 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Pfam PF00689 Cation transporting ATPase, C-terminus 761 939 1.4E-48 T 06-07-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Gene3D G3DSA:3.40.1110.10 341 574 6.8E-66 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Gene3D G3DSA:1.20.1110.10 639 941 6.4E-116 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Gene3D G3DSA:1.20.1110.10 66 132 6.4E-116 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Gene3D G3DSA:2.70.150.10 133 249 9.2E-40 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Gene3D G3DSA:2.70.150.10 24 65 9.2E-40 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Pfam PF00122 E1-E2 ATPase 105 342 1.2E-62 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF81665 12 138 6.93E-125 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF81665 720 945 6.93E-125 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF81665 249 345 6.93E-125 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 107 372 5.6E-40 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 641 751 1.6E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SMART SM00831 12 86 1.6E-24 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 600 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 694 706 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 185 199 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 351 365 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 670 689 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 568 579 7.3E-39 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Pfam PF00702 haloacid dehalogenase-like hydrolase 347 684 3.5E-23 T 06-07-2017 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 Pfam PF00690 Cation transporter/ATPase, N-terminus 13 81 3.9E-19 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF56784 349 369 4.79E-62 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF56784 523 781 4.79E-62 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23360 30d1bd3a6be56a39938bfa3432513b21 948 SUPERFAMILY SSF81660 358 570 4.58E-61 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 SUPERFAMILY SSF53335 81 323 2.43E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 Gene3D G3DSA:3.40.50.150 79 323 1.1E-55 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 Pfam PF00891 O-methyltransferase 89 313 1.9E-38 T 06-07-2017 IPR001077 O-methyltransferase, family 2 GO:0008171 APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 SUPERFAMILY SSF46785 4 69 5.26E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 Gene3D G3DSA:1.10.10.10 1 72 2.7E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26215 75ec106a2a58d809158b0def0a3ea34d 327 Pfam PF16864 Dimerisation domain 6 80 9.9E-11 T 06-07-2017 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 PIRSF PIRSF004555 13 115 1.1E-31 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 SUPERFAMILY SSF82607 21 114 1.31E-31 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 15 108 19.392 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 9 114 1.3E-29 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 Gene3D G3DSA:3.30.1310.10 12 114 2.4E-39 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS00550 3d1b8d13cb32686ca344caf01a742f5c 115 Pfam PF02575 YbaB/EbfC DNA-binding family 22 110 2.9E-30 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 Gene3D G3DSA:1.20.1090.10 166 362 2.9E-47 T 06-07-2017 APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 156 184 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 14 353 1.8E-57 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 PIRSF PIRSF000112 4 367 3.3E-111 T 06-07-2017 APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 Gene3D G3DSA:3.40.50.1970 13 165 4.2E-38 T 06-07-2017 APT55_RS02135 cacbac6d8c2b947e309c3f8f06bc52df 387 SUPERFAMILY SSF56796 12 361 4.19E-77 T 06-07-2017 APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 SUPERFAMILY SSF52540 16 236 3.51E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 Pfam PF13732 Domain of unknown function (DUF4162) 225 309 1.3E-6 T 06-07-2017 IPR025302 Domain of unknown function DUF4162 APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 Pfam PF00005 ABC transporter 34 172 4.7E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 Pfam PF00005 ABC transporter 355 498 8.7E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 SMART SM00382 363 545 8.5E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 SMART SM00382 42 275 4.9E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 SUPERFAMILY SSF52540 338 557 2.43E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 Gene3D G3DSA:3.40.50.300 332 559 5.6E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13525 515201eabe45f47d5df00033b2f07c73 643 Gene3D G3DSA:3.40.50.300 13 233 3.0E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12530 5bd2e396271cf648f0a6d52588c1e9e7 128 Pfam PF06868 Protein of unknown function (DUF1257) 20 122 3.5E-42 T 06-07-2017 IPR009666 Uncharacterised protein family Ycf35 APT55_RS19810 81f2f85e62899379b47bd24e2ae58bbc 118 SUPERFAMILY SSF46785 23 112 4.33E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19810 81f2f85e62899379b47bd24e2ae58bbc 118 Pfam PF03551 Transcriptional regulator PadR-like family 26 103 3.9E-18 T 06-07-2017 IPR005149 Transcription regulator PadR, N-terminal APT55_RS19810 81f2f85e62899379b47bd24e2ae58bbc 118 Gene3D G3DSA:1.10.10.10 25 107 2.1E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 277 470 1.3E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 SUPERFAMILY SSF52266 272 479 8.09E-30 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 230 248 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Pfam PF07691 PA14 domain 33 162 4.3E-30 T 06-07-2017 IPR011658 PA14 domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 SMART SM00758 31 168 2.1E-27 T 06-07-2017 IPR011658 PA14 domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 221 239 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 SUPERFAMILY SSF56988 32 298 3.79E-49 T 06-07-2017 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 PRINTS PR00313 NodO calcium binding signature 231 242 1.5E-10 T 06-07-2017 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 PRINTS PR00313 NodO calcium binding signature 532 541 1.5E-10 T 06-07-2017 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 PRINTS PR00313 NodO calcium binding signature 243 251 1.5E-10 T 06-07-2017 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 PRINTS PR00313 NodO calcium binding signature 523 531 1.5E-10 T 06-07-2017 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Gene3D G3DSA:3.40.50.1110 272 479 8.9E-32 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 SUPERFAMILY SSF51120 505 576 1.96E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 233 249 0.017 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 522 539 0.0059 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 218 232 0.063 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Gene3D G3DSA:2.150.10.10 503 565 9.3E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Gene3D G3DSA:3.90.182.10 234 268 1.9E-47 T 06-07-2017 IPR011658 PA14 domain APT55_RS27805 a022764fa0119a47c6141bba9ea703c9 640 Gene3D G3DSA:3.90.182.10 31 197 1.9E-47 T 06-07-2017 IPR011658 PA14 domain APT55_RS09380 f215ac72ee82de8a1a5ca9a0cb5a78f0 346 Gene3D G3DSA:3.40.640.10 37 239 8.8E-62 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS09380 f215ac72ee82de8a1a5ca9a0cb5a78f0 346 Gene3D G3DSA:3.90.1150.10 240 341 1.5E-25 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS09380 f215ac72ee82de8a1a5ca9a0cb5a78f0 346 SUPERFAMILY SSF53383 4 339 2.01E-66 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS09380 f215ac72ee82de8a1a5ca9a0cb5a78f0 346 Pfam PF00155 Aminotransferase class I and II 24 330 3.7E-27 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS09380 f215ac72ee82de8a1a5ca9a0cb5a78f0 346 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 6 337 2.1E-90 T 06-07-2017 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 854 23.463 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Gene3D G3DSA:3.90.740.10 224 431 8.5E-62 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 SUPERFAMILY SSF50677 227 422 2.72E-50 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 619 658 1.8E-6 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 424 580 2.2E-6 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 5.3E-24 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Pfam PF08264 Anticodon-binding domain of tRNA 695 810 2.1E-21 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 SUPERFAMILY SSF47323 663 854 5.98E-37 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Gene3D G3DSA:1.10.730.10 648 788 2.4E-49 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 216 235 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 567 577 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 186 199 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 495 513 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 534 556 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 3.2E-55 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Gene3D G3DSA:3.40.50.620 4 223 1.5E-154 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Gene3D G3DSA:3.40.50.620 432 583 1.5E-154 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Gene3D G3DSA:3.40.50.620 618 647 1.5E-154 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 223 405 8.3E-71 T 06-07-2017 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 SUPERFAMILY SSF52374 423 667 3.18E-147 T 06-07-2017 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 SUPERFAMILY SSF52374 4 227 3.18E-147 T 06-07-2017 APT55_RS28925 f69028a6913c303d359f94231c59ea8b 855 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 854 0.0 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT55_RS08360 485340871835d6437a3ba1565d68be75 286 SMART SM00382 57 239 1.7E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08360 485340871835d6437a3ba1565d68be75 286 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 48 277 1.6E-120 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS08360 485340871835d6437a3ba1565d68be75 286 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08360 485340871835d6437a3ba1565d68be75 286 Pfam PF00005 ABC transporter 48 189 5.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08360 485340871835d6437a3ba1565d68be75 286 Gene3D G3DSA:3.40.50.300 21 249 9.8E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08360 485340871835d6437a3ba1565d68be75 286 SUPERFAMILY SSF52540 29 256 2.01E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07900 4ef3aee42d3bfe2018384796bc623fef 1070 Gene3D G3DSA:1.50.10.10 15 413 7.2E-10 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS07900 4ef3aee42d3bfe2018384796bc623fef 1070 SUPERFAMILY SSF48208 9 454 3.83E-84 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS07900 4ef3aee42d3bfe2018384796bc623fef 1070 Pfam PF00723 Glycosyl hydrolases family 15 11 826 8.0E-148 T 06-07-2017 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: R-HSA-70221 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 PIRSF PIRSF001223 1 100 4.1E-52 T 06-07-2017 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 SUPERFAMILY SSF54111 1 100 2.75E-47 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-42 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 Gene3D G3DSA:3.30.280.10 1 100 8.2E-51 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.1E-55 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 Pfam PF00547 Urease, gamma subunit 1 99 2.5E-48 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07355 74ada96e87990a31cf121acba0aa3fb9 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.991 T 06-07-2017 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07630 c46200ebc85e0bb9be7b965b1ea26a44 594 Gene3D G3DSA:3.10.105.10 309 561 8.7E-52 T 06-07-2017 APT55_RS07630 c46200ebc85e0bb9be7b965b1ea26a44 594 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 483 1.1E-83 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain APT55_RS07630 c46200ebc85e0bb9be7b965b1ea26a44 594 Gene3D G3DSA:3.90.76.10 52 222 4.8E-36 T 06-07-2017 APT55_RS07630 c46200ebc85e0bb9be7b965b1ea26a44 594 PIRSF PIRSF002741 5 586 2.7E-90 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT55_RS07630 c46200ebc85e0bb9be7b965b1ea26a44 594 SUPERFAMILY SSF53850 44 588 2.53E-114 T 06-07-2017 APT55_RS12370 f05c0bf78048aae8ab8ac3bd0ebb6c08 319 SUPERFAMILY SSF55347 136 257 6.8E-6 T 06-07-2017 APT55_RS12370 f05c0bf78048aae8ab8ac3bd0ebb6c08 319 Gene3D G3DSA:3.40.50.720 2 191 2.1E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12370 f05c0bf78048aae8ab8ac3bd0ebb6c08 319 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 4.2E-22 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS12370 f05c0bf78048aae8ab8ac3bd0ebb6c08 319 SUPERFAMILY SSF51735 2 170 9.13E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12370 f05c0bf78048aae8ab8ac3bd0ebb6c08 319 Gene3D G3DSA:3.30.360.10 209 319 3.0E-11 T 06-07-2017 APT55_RS00310 cc3ef1a71593db64eb65b575d9cbb187 351 Pfam PF07690 Major Facilitator Superfamily 6 338 2.1E-35 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS00310 cc3ef1a71593db64eb65b575d9cbb187 351 SUPERFAMILY SSF103473 2 346 3.4E-46 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS00310 cc3ef1a71593db64eb65b575d9cbb187 351 Gene3D G3DSA:1.20.1250.20 3 173 2.5E-23 T 06-07-2017 APT55_RS00310 cc3ef1a71593db64eb65b575d9cbb187 351 Gene3D G3DSA:1.20.1250.20 204 346 1.4E-8 T 06-07-2017 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 Gene3D G3DSA:1.10.10.10 127 184 1.6E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 Gene3D G3DSA:1.10.1740.10 12 120 2.9E-32 T 06-07-2017 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 SUPERFAMILY SSF88946 11 107 1.82E-26 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 Pfam PF04542 Sigma-70 region 2 33 97 1.8E-17 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 54 85 - T 06-07-2017 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 182 1.9E-26 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 SUPERFAMILY SSF88659 120 184 1.57E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS20170 491441b708b610d5f797f097d96d16f9 190 Pfam PF08281 Sigma-70, region 4 129 178 1.4E-13 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 251 314 5.3E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SUPERFAMILY SSF47384 233 316 1.43E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Gene3D G3DSA:3.30.565.10 317 467 9.4E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Pfam PF01590 GAF domain 62 206 1.0E-25 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 6.6E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 426 6.6E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 6.6E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 6.6E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SUPERFAMILY SSF55874 324 467 3.67E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SMART SM00387 358 471 2.0E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SMART SM00388 249 317 4.8E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 470 6.1E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SMART SM00065 62 216 1.1E-36 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Gene3D G3DSA:3.30.450.40 46 209 2.4E-40 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 Gene3D G3DSA:1.10.287.130 242 313 4.9E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28855 22672d29bbc5b07dd055a7aaed22193a 474 SUPERFAMILY SSF55781 44 216 7.85E-58 T 06-07-2017 IPR029016 GAF domain-like APT55_RS11480 1d43068a43532974fa14142dfad5d4e8 161 Gene3D G3DSA:1.10.490.20 2 161 1.0E-54 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS11480 1d43068a43532974fa14142dfad5d4e8 161 Pfam PF00502 Phycobilisome protein 7 160 4.3E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS11480 1d43068a43532974fa14142dfad5d4e8 161 PIRSF PIRSF000081 1 161 1.1E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS11480 1d43068a43532974fa14142dfad5d4e8 161 SUPERFAMILY SSF46458 2 160 8.77E-53 T 06-07-2017 IPR009050 Globin-like APT55_RS30970 de7cb1d254dab5e269f0d64fc94fae88 399 Pfam PF13546 DDE superfamily endonuclease 32 245 2.4E-57 T 06-07-2017 APT55_RS30970 de7cb1d254dab5e269f0d64fc94fae88 399 SUPERFAMILY SSF53098 72 374 1.82E-22 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS09985 de7cb1d254dab5e269f0d64fc94fae88 399 Pfam PF13546 DDE superfamily endonuclease 32 245 2.4E-57 T 06-07-2017 APT55_RS09985 de7cb1d254dab5e269f0d64fc94fae88 399 SUPERFAMILY SSF53098 72 374 1.82E-22 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS14710 f601d776efd36c2fbe34489b9d2ae288 404 Pfam PF12704 MacB-like periplasmic core domain 21 245 6.2E-38 T 06-07-2017 IPR025857 MacB-like periplasmic core domain APT55_RS14710 f601d776efd36c2fbe34489b9d2ae288 404 Pfam PF02687 FtsX-like permease family 285 397 1.2E-17 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 SUPERFAMILY SSF52374 4 326 9.12E-95 T 06-07-2017 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 482 3.5E-167 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 326 3.8E-128 T 06-07-2017 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 2.9E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 196 214 2.9E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 2.9E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 227 248 2.9E-30 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 SMART SM00840 360 431 2.8E-13 T 06-07-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 Pfam PF09190 DALR domain 360 430 7.0E-14 T 06-07-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 Gene3D G3DSA:3.40.50.620 20 318 6.6E-106 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 Gene3D G3DSA:1.20.120.640 321 420 3.2E-13 T 06-07-2017 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 SUPERFAMILY SSF47323 347 480 8.11E-28 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS07335 bda6ecb58dfa383c282c1e0a23cc7dc5 483 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 482 37.994 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 Gene3D G3DSA:1.10.287.130 91 121 1.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 Gene3D G3DSA:1.10.287.130 156 185 1.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 SUPERFAMILY SSF47384 89 130 1.08E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 SUPERFAMILY SSF47384 157 187 1.08E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 95 188 1.0E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 SMART SM00388 95 189 1.1E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 SUPERFAMILY SSF55874 175 350 6.94E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 Gene3D G3DSA:3.30.565.10 187 350 5.0E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 350 8.1E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 294 3.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 329 3.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 349 3.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 308 3.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS00845 7c567a8095b1b96a7d379e112a92ba43 351 SMART SM00387 234 351 1.6E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 Pfam PF00106 short chain dehydrogenase 4 181 1.7E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 3.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 3.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 3.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 SUPERFAMILY SSF51735 1 221 5.61E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 Gene3D G3DSA:3.40.50.720 1 221 1.9E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03975 29d02a8edc6dd5044e437ffcfb8c839c 221 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 178 0.0036 T 06-07-2017 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 Gene3D G3DSA:2.40.50.100 111 142 2.0E-14 T 06-07-2017 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 Gene3D G3DSA:2.40.50.100 364 399 2.0E-14 T 06-07-2017 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 Pfam PF13437 HlyD family secretion protein 367 471 5.0E-14 T 06-07-2017 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 120 140 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 497 517 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 482 497 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 101 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 411 435 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 379 400 5.6E-26 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 SUPERFAMILY SSF111369 314 420 4.32E-6 T 06-07-2017 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 75 513 1.9E-62 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 APT55_RS30540 0b270ee4daa07054cc43b0d323ac933f 518 Pfam PF13533 Biotin-lipoyl like 109 148 4.5E-10 T 06-07-2017 APT55_RS24695 ee4594277724ec6e3a3d155402079bee 331 SUPERFAMILY SSF55961 123 318 3.57E-24 T 06-07-2017 APT55_RS24695 ee4594277724ec6e3a3d155402079bee 331 SUPERFAMILY SSF50022 3 123 1.31E-34 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS24695 ee4594277724ec6e3a3d155402079bee 331 Gene3D G3DSA:2.102.10.10 8 125 1.2E-33 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS24695 ee4594277724ec6e3a3d155402079bee 331 Pfam PF00355 Rieske [2Fe-2S] domain 10 91 5.9E-20 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 68 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 2.7E-16 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 SUPERFAMILY SSF46689 11 92 9.45E-20 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 Gene3D G3DSA:1.10.357.10 7 180 5.0E-33 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 6.3E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS26210 8e152d5fbe1a2251606b927ec9f27f23 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 6.3E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS25370 99eb1820d64d374929f36c6c537f4192 142 SUPERFAMILY SSF51316 3 130 1.46E-38 T 06-07-2017 IPR011057 Mss4-like APT55_RS25370 99eb1820d64d374929f36c6c537f4192 142 Gene3D G3DSA:3.90.1590.10 3 132 1.0E-34 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT55_RS25370 99eb1820d64d374929f36c6c537f4192 142 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 113 1.9E-17 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 Pfam PF08323 Starch synthase catalytic domain 3 243 4.6E-64 T 06-07-2017 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 Pfam PF00534 Glycosyl transferases group 1 295 446 7.6E-10 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 Gene3D G3DSA:3.40.50.2000 257 469 8.9E-64 T 06-07-2017 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 SUPERFAMILY SSF53756 5 490 9.77E-102 T 06-07-2017 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 487 1.1E-164 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS01100 3a3a0aa1a00b5455f78fb8ac08e603a4 491 Hamap MF_00484 Glycogen synthase [glgA]. 1 488 38.765 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT55_RS28200 1e5284c1b676ea74f7dffcf82bc2ca48 123 SUPERFAMILY SSF46785 10 113 1.78E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28200 1e5284c1b676ea74f7dffcf82bc2ca48 123 Gene3D G3DSA:1.10.10.10 24 120 4.9E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28200 1e5284c1b676ea74f7dffcf82bc2ca48 123 Pfam PF03551 Transcriptional regulator PadR-like family 27 94 9.2E-11 T 06-07-2017 IPR005149 Transcription regulator PadR, N-terminal APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 19 266 2.4E-91 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 PRINTS PR00599 Methionine aminopeptidase-1 signature 84 97 1.3E-20 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 PRINTS PR00599 Methionine aminopeptidase-1 signature 177 189 1.3E-20 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 PRINTS PR00599 Methionine aminopeptidase-1 signature 209 221 1.3E-20 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 PRINTS PR00599 Methionine aminopeptidase-1 signature 107 123 1.3E-20 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 Gene3D G3DSA:3.90.230.10 20 267 5.6E-89 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 SUPERFAMILY SSF55920 20 266 1.22E-84 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 Hamap MF_01974 Methionine aminopeptidase [map]. 19 267 40.398 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 183 201 - T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS21715 fdc23533e110caebdf57d30d166d298b 270 Pfam PF00557 Metallopeptidase family M24 29 258 2.9E-52 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 SUPERFAMILY SSF55239 322 407 1.31E-18 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 35 177 1.1E-9 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 SMART SM00961 315 405 1.0E-26 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 SUPERFAMILY SSF52540 20 212 7.35E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 324 405 2.1E-10 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 Gene3D G3DSA:3.40.50.300 35 208 2.6E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18370 84c45c4f4e9873d0e65c6d6592f9d365 411 Gene3D G3DSA:3.30.190.10 325 407 3.1E-13 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Gene3D G3DSA:1.25.40.10 353 518 1.8E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 394 427 0.08 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 191 224 4.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 123 156 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 292 325 6.0E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 326 359 2.7E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 157 190 1.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 360 393 8.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 258 291 0.003 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SMART SM00028 225 257 0.02 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF13432 Tetratricopeptide repeat 170 223 2.2E-9 T 06-07-2017 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF13432 Tetratricopeptide repeat 375 415 5.8E-4 T 06-07-2017 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF13432 Tetratricopeptide repeat 228 290 1.2E-5 T 06-07-2017 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SUPERFAMILY SSF48452 120 329 4.05E-55 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Gene3D G3DSA:1.25.40.10 114 352 1.0E-74 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF12770 CHAT domain 665 963 8.5E-50 T 06-07-2017 IPR024983 CHAT domain APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 SUPERFAMILY SSF48439 308 421 3.66E-36 T 06-07-2017 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF07719 Tetratricopeptide repeat 123 155 2.3E-5 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF00515 Tetratricopeptide repeat 293 325 3.5E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS17465 c2398caa4af24601729ee38de56cd3ef 964 Pfam PF00515 Tetratricopeptide repeat 327 359 1.2E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS14170 1b73811a49db68f57ef1393f0a9cdddf 483 Pfam PF13520 Amino acid permease 56 449 1.4E-49 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS14170 1b73811a49db68f57ef1393f0a9cdddf 483 PIRSF PIRSF006060 42 483 8.8E-72 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 Gene3D G3DSA:3.10.290.10 3 63 6.3E-18 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 Pfam PF01479 S4 domain 3 43 2.3E-10 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 236 5.8E-54 T 06-07-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 SUPERFAMILY SSF55174 3 94 4.56E-16 T 06-07-2017 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 Pfam PF00849 RNA pseudouridylate synthase 66 200 3.1E-18 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 SMART SM00363 3 60 1.8E-7 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 SUPERFAMILY SSF55120 65 241 1.46E-41 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT55_RS27275 2db32fb9460bd0de2347a931e0ce5c87 262 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 106 120 - T 06-07-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT55_RS10270 79bd4a1d1093ce87fba9abd4533a9e69 124 Pfam PF00072 Response regulator receiver domain 6 118 1.1E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10270 79bd4a1d1093ce87fba9abd4533a9e69 124 SMART SM00448 4 118 6.7E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10270 79bd4a1d1093ce87fba9abd4533a9e69 124 SUPERFAMILY SSF52172 4 123 3.27E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10270 79bd4a1d1093ce87fba9abd4533a9e69 124 Gene3D G3DSA:3.40.50.2300 4 123 4.9E-31 T 06-07-2017 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 ProSitePatterns PS00501 Signal peptidases I serine active site. 50 57 - T 06-07-2017 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 98 110 1.0E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 41 57 1.0E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 163 1.0E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 27 184 3.3E-49 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 SUPERFAMILY SSF51306 39 190 2.44E-56 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 ProSitePatterns PS00760 Signal peptidases I lysine active site. 100 112 - T 06-07-2017 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 Pfam PF00717 Peptidase S24-like 47 121 1.2E-19 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 Gene3D G3DSA:2.10.109.10 144 190 6.5E-45 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 Gene3D G3DSA:2.10.109.10 38 108 6.5E-45 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS03235 b487a282618af3e84c65cd67df69688d 196 ProSitePatterns PS00761 Signal peptidases I signature 3. 149 162 - T 06-07-2017 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 SMART SM00255 5 142 1.3E-7 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Gene3D G3DSA:3.40.50.10140 8 116 6.5E-13 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Gene3D G3DSA:3.40.50.300 458 487 9.2E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Gene3D G3DSA:3.40.50.300 522 625 9.2E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Pfam PF13676 TIR domain 9 118 5.2E-24 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 SUPERFAMILY SSF52540 216 349 1.59E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 SUPERFAMILY SSF52200 7 114 3.27E-22 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Gene3D G3DSA:3.40.50.300 234 341 1.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20980 c61f9466b331991c8d6aaaee22599a0a 816 Pfam PF05729 NACHT domain 239 384 8.3E-16 T 06-07-2017 APT55_RS05500 e87595228e624356cc61ae0455c9d787 387 Gene3D G3DSA:2.120.10.30 6 386 2.8E-111 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS05500 e87595228e624356cc61ae0455c9d787 387 Pfam PF07995 Glucose / Sorbosone dehydrogenase 46 381 3.7E-133 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 APT55_RS05500 e87595228e624356cc61ae0455c9d787 387 SUPERFAMILY SSF50952 29 386 1.14E-52 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS25945 ee8b6171eee20448027ea5a0f210ec40 122 SUPERFAMILY SSF51182 15 119 6.19E-34 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS25945 ee8b6171eee20448027ea5a0f210ec40 122 Pfam PF01050 Mannose-6-phosphate isomerase 8 117 3.0E-44 T 06-07-2017 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 APT55_RS25945 ee8b6171eee20448027ea5a0f210ec40 122 Gene3D G3DSA:2.60.120.10 15 119 2.0E-37 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS30440 de988385dd5031d711b8c14e2addb0e2 465 Pfam PF03743 Bacterial conjugation TrbI-like protein 262 465 3.8E-15 T 06-07-2017 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Gene3D G3DSA:3.50.50.60 207 325 1.5E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Gene3D G3DSA:3.50.50.60 11 155 1.5E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Gene3D G3DSA:3.50.50.60 531 588 1.5E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 SUPERFAMILY SSF51905 8 254 3.11E-16 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Pfam PF12831 FAD dependent oxidoreductase 19 153 7.3E-16 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Pfam PF12831 FAD dependent oxidoreductase 487 612 1.6E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15740 894ecba6c9374495865aa340831f5ac0 635 Pfam PF12831 FAD dependent oxidoreductase 202 420 1.7E-9 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 128 213 4.3E-11 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 Gene3D G3DSA:3.20.190.10 2 104 3.0E-13 T 06-07-2017 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 SMART SM00898 2 109 6.6E-7 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 SUPERFAMILY SSF57716 234 270 1.63E-11 T 06-07-2017 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 SUPERFAMILY SSF46946 128 215 1.44E-14 T 06-07-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 100 2.7E-8 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 Pfam PF06827 Zinc finger found in FPG and IleRS 244 270 7.8E-7 T 06-07-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 SMART SM01232 125 220 3.2E-9 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 SUPERFAMILY SSF81624 2 97 1.96E-17 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT55_RS05485 65f43c3ed5462aec5ebce8736d6ebba9 272 Gene3D G3DSA:1.10.8.50 128 270 4.0E-30 T 06-07-2017 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 SUPERFAMILY SSF51905 1 327 1.3E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 SUPERFAMILY SSF51905 447 485 1.3E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 Gene3D G3DSA:3.50.50.60 209 343 3.0E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 Gene3D G3DSA:3.50.50.60 110 111 3.0E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 Gene3D G3DSA:3.50.50.60 3 56 3.0E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04055 da17d6dd922462335594d2652bf9ea5c 497 Pfam PF01593 Flavin containing amine oxidoreductase 13 483 1.1E-13 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS16765 04092aca6510412ab4ea1dec15574c9e 64 Pfam PF11061 Protein of unknown function (DUF2862) 3 61 5.9E-28 T 06-07-2017 IPR021291 Protein of unknown function DUF2862 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 SUPERFAMILY SSF48179 152 304 4.76E-51 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 295 33.626 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 36 133 5.5E-13 T 06-07-2017 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 34 1.2E-8 T 06-07-2017 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 PIRSF PIRSF000114 34 305 1.7E-73 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 SUPERFAMILY SSF51735 1 151 1.43E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 153 293 1.6E-46 T 06-07-2017 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Gene3D G3DSA:1.10.1040.10 157 299 1.9E-51 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Gene3D G3DSA:3.40.50.720 37 156 1.2E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 161 182 - T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 APT55_RS16515 6b54081544e186aa02c65a88300732fd 305 Gene3D G3DSA:3.40.50.720 1 36 2.4E-10 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 SUPERFAMILY SSF50249 14 72 1.6E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 393 424 - T 06-07-2017 IPR030390 RNA methyltransferase TrmA, active site APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 30 456 3.3E-156 T 06-07-2017 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 Gene3D G3DSA:2.40.50.140 12 92 1.1E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 SUPERFAMILY SSF53335 81 463 5.72E-89 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 127 463 4.2E-23 T 06-07-2017 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 APT55_RS05320 0e2724c4a2c2ca9007681fefb8fa4f6c 466 Gene3D G3DSA:3.40.50.150 260 463 4.6E-64 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17180 b567d2cf939d5104defb066b92dbc125 111 Hamap MF_01370 Photosystem II reaction center Psb28 protein [psb28]. 1 109 34.746 T 06-07-2017 IPR005610 Photosystem II Psb28, class 1 GO:0009523|GO:0009654|GO:0015979|GO:0016020 APT55_RS17180 b567d2cf939d5104defb066b92dbc125 111 ProDom PD012692 PHOTOSYSTEM II REACTION W CENTER PSB28 CHLOROPLAST PHOTOSYNTHESIS PLASTID CENTRE 2 103 1.0E-38 T 06-07-2017 IPR005610 Photosystem II Psb28, class 1 GO:0009523|GO:0009654|GO:0015979|GO:0016020 APT55_RS17180 b567d2cf939d5104defb066b92dbc125 111 TIGRFAM TIGR03047 PS_II_psb28: photosystem II reaction center protein Psb28 4 110 1.7E-50 T 06-07-2017 IPR005610 Photosystem II Psb28, class 1 GO:0009523|GO:0009654|GO:0015979|GO:0016020 APT55_RS17180 b567d2cf939d5104defb066b92dbc125 111 Pfam PF03912 Psb28 protein 4 108 1.6E-47 T 06-07-2017 IPR005610 Photosystem II Psb28, class 1 GO:0009523|GO:0009654|GO:0015979|GO:0016020 APT55_RS02055 bb1720deae5d0e8661b0de6167250b96 754 Pfam PF05419 GUN4-like 608 730 7.0E-37 T 06-07-2017 IPR008629 GUN4-like APT55_RS02055 bb1720deae5d0e8661b0de6167250b96 754 SUPERFAMILY SSF140869 609 754 3.66E-41 T 06-07-2017 APT55_RS02055 bb1720deae5d0e8661b0de6167250b96 754 Pfam PF05729 NACHT domain 190 346 2.4E-13 T 06-07-2017 APT55_RS02055 bb1720deae5d0e8661b0de6167250b96 754 SUPERFAMILY SSF52540 183 347 1.85E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05300 9811093d0fab7c9b74782e407e42a00e 345 SUPERFAMILY SSF51430 1 344 1.31E-103 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS05300 9811093d0fab7c9b74782e407e42a00e 345 Pfam PF00248 Aldo/keto reductase family 15 336 1.6E-68 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS05300 9811093d0fab7c9b74782e407e42a00e 345 Gene3D G3DSA:3.20.20.100 1 342 2.3E-105 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 Pfam PF01430 Hsp33 protein 3 281 3.9E-80 T 06-07-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 294 36.795 T 06-07-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 Gene3D G3DSA:3.55.30.10 3 235 5.6E-72 T 06-07-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 PIRSF PIRSF005261 1 295 5.8E-66 T 06-07-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 SUPERFAMILY SSF64397 4 245 9.16E-68 T 06-07-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 Gene3D G3DSA:3.90.1280.10 236 293 4.0E-22 T 06-07-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APT55_RS27710 5f855aac23e2f1174c24eb038e09abe3 298 SUPERFAMILY SSF118352 234 293 1.11E-19 T 06-07-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APT55_RS17245 02435460dd9a497085c5cc1c1259b2db 187 PIRSF PIRSF014979 6 187 1.3E-41 T 06-07-2017 IPR014468 Uncharacterised conserved protein UCP014979 APT55_RS17245 02435460dd9a497085c5cc1c1259b2db 187 Pfam PF01345 Domain of unknown function DUF11 73 117 1.6E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS17245 02435460dd9a497085c5cc1c1259b2db 187 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 75 122 8.7E-12 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 Gene3D G3DSA:1.10.10.10 79 164 7.2E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 6 77 5.6E-8 T 06-07-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 SUPERFAMILY SSF53155 7 86 2.55E-20 T 06-07-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 81 160 1.4E-37 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 163 37.517 T 06-07-2017 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 SUPERFAMILY SSF46767 80 162 1.29E-33 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 131 137 - T 06-07-2017 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT55_RS23975 7fcd40dc6a233086b9b613f5348b76e2 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 82 161 3.7E-35 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS08095 ac70fd85b28332f5030b1a4787170c70 331 Pfam PF09084 NMT1/THI5 like 53 246 3.6E-22 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS08095 ac70fd85b28332f5030b1a4787170c70 331 SUPERFAMILY SSF53850 37 248 3.89E-36 T 06-07-2017 APT55_RS08095 ac70fd85b28332f5030b1a4787170c70 331 Gene3D G3DSA:3.40.190.10 125 203 6.5E-17 T 06-07-2017 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 Pfam PF00124 Photosynthetic reaction centre protein 28 325 1.0E-96 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 SUPERFAMILY SSF81483 12 343 9.94E-145 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 197 223 1.6E-5 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 109 137 1.6E-5 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 Gene3D G3DSA:1.20.85.10 141 312 7.0E-84 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 191 217 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 Hamap MF_01379 Photosystem II protein D1 [psbA]. 1 347 60.303 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS16705 a1d36255635aaf8a92816913f0872509 360 TIGRFAM TIGR01151 psbA: photosystem II q(b) protein 1 360 2.6E-244 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 Pfam PF00124 Photosynthetic reaction centre protein 28 325 1.0E-96 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 SUPERFAMILY SSF81483 12 343 9.94E-145 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 197 223 1.6E-5 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 109 137 1.6E-5 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 Gene3D G3DSA:1.20.85.10 141 312 7.0E-84 T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 191 217 - T 06-07-2017 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 Hamap MF_01379 Photosystem II protein D1 [psbA]. 1 347 60.303 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS29090 a1d36255635aaf8a92816913f0872509 360 TIGRFAM TIGR01151 psbA: photosystem II q(b) protein 1 360 2.6E-244 T 06-07-2017 IPR005867 Photosystem II protein D1 GO:0009055 MetaCyc: PWY-101 APT55_RS17060 44dbc83f8c16572fee24d7fa1717c321 455 Gene3D G3DSA:3.40.309.10 242 427 6.3E-60 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS17060 44dbc83f8c16572fee24d7fa1717c321 455 SUPERFAMILY SSF53720 3 455 3.67E-140 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS17060 44dbc83f8c16572fee24d7fa1717c321 455 Pfam PF00171 Aldehyde dehydrogenase family 3 452 9.3E-137 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS17060 44dbc83f8c16572fee24d7fa1717c321 455 Gene3D G3DSA:3.40.605.10 3 241 4.7E-70 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 SUPERFAMILY SSF54197 38 195 4.68E-45 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 169 186 - T 06-07-2017 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 38 363 9.2E-54 T 06-07-2017 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 Gene3D G3DSA:3.30.428.10 63 193 8.4E-33 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 202 360 3.9E-21 T 06-07-2017 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 PIRSF PIRSF000808 33 358 5.8E-90 T 06-07-2017 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 37 194 4.8E-26 T 06-07-2017 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 SUPERFAMILY SSF54197 198 356 1.86E-39 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS27990 77f8b237077ad2689115050a6ba81a5d 366 Gene3D G3DSA:3.30.428.10 194 361 7.0E-49 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 660 771 9.2E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.30.450.20 259 399 3.7E-37 T 06-07-2017 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00086 482 521 5.0 T 06-07-2017 IPR001610 PAC motif APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00086 226 268 0.072 T 06-07-2017 IPR001610 PAC motif APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00086 355 397 1.7E-7 T 06-07-2017 IPR001610 PAC motif APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.40.50.2300 5 141 5.2E-24 T 06-07-2017 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF55785 289 399 2.26E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00091 280 349 0.69 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00091 151 217 3.0E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00091 409 477 3.8E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:1.10.287.130 543 599 2.0E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF52172 8 166 4.98E-27 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.30.565.10 600 772 5.6E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF00072 Response regulator receiver domain 795 906 3.2E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF00072 Response regulator receiver domain 11 124 2.0E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00388 548 614 1.8E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.30.450.20 400 515 4.5E-22 T 06-07-2017 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00448 793 906 3.4E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00448 9 126 8.2E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 405 527 5.1E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 404 3.9E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 273 1.7E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF55785 394 512 1.06E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF55785 139 266 1.34E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF08447 PAS fold 303 389 1.2E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF52172 791 911 3.98E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SMART SM00387 660 773 7.6E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF47384 532 614 3.53E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF00512 His Kinase A (phospho-acceptor) domain 549 611 1.1E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.40.50.2300 790 910 1.9E-29 T 06-07-2017 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF13426 PAS domain 426 520 2.0E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 SUPERFAMILY SSF55874 603 771 5.24E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Pfam PF00989 PAS fold 151 265 6.1E-9 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 711 1.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 PRINTS PR00344 Bacterial sensor protein C-terminal signature 715 725 1.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 PRINTS PR00344 Bacterial sensor protein C-terminal signature 757 770 1.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 750 1.8E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10275 68563d20ad38bb2ab006fc3131ee5dfc 913 Gene3D G3DSA:3.30.450.20 142 258 4.5E-20 T 06-07-2017 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 Gene3D G3DSA:1.20.58.410 7 98 2.6E-19 T 06-07-2017 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 Gene3D G3DSA:3.30.160.20 216 293 4.1E-32 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 361 3.0E-156 T 06-07-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 Pfam PF03462 PCRF domain 14 209 4.9E-70 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 Pfam PF00472 RF-1 domain 217 326 7.5E-40 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 233 249 - T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 SMART SM00937 68 184 7.1E-57 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 SUPERFAMILY SSF75620 13 357 3.01E-122 T 06-07-2017 APT55_RS09195 9585d451c1e0a5796894815a1cc34d96 371 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 6 361 36.6 T 06-07-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APT55_RS05545 3e96c2cc1a7fba7fcf62f07acf11b09d 127 Gene3D G3DSA:3.10.180.10 1 113 2.5E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS05545 3e96c2cc1a7fba7fcf62f07acf11b09d 127 SUPERFAMILY SSF54593 1 115 3.49E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS05545 3e96c2cc1a7fba7fcf62f07acf11b09d 127 ProSitePatterns PS00934 Glyoxalase I signature 1. 7 28 - T 06-07-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT55_RS05545 3e96c2cc1a7fba7fcf62f07acf11b09d 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 109 1.0E-6 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Gene3D G3DSA:1.25.10.10 54 332 1.9E-32 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SUPERFAMILY SSF48371 52 476 3.72E-31 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Pfam PF01347 Lipoprotein amino terminal region 380 478 2.1E-7 T 06-07-2017 IPR001747 Lipid transport protein, N-terminal GO:0005319|GO:0006869 Reactome: R-HSA-174800 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SUPERFAMILY SSF52540 724 856 2.22E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Pfam PF13646 HEAT repeats 242 333 1.2E-7 T 06-07-2017 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Pfam PF13646 HEAT repeats 110 193 1.9E-10 T 06-07-2017 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Gene3D G3DSA:1.25.10.20 333 402 4.0E-7 T 06-07-2017 IPR011030 Vitellinogen, superhelical GO:0005319|GO:0006869 Reactome: R-HSA-174800 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Gene3D G3DSA:1.25.10.20 403 478 2.1E-8 T 06-07-2017 IPR011030 Vitellinogen, superhelical GO:0005319|GO:0006869 Reactome: R-HSA-174800 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 Gene3D G3DSA:3.40.50.300 722 827 4.8E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 253 284 930.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 288 319 450.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 323 354 1100.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 218 249 11.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 183 214 250.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 113 144 1.4 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 148 179 0.9 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS24570 95f5b7b06078f67fa2f08a7b1b9ca740 1088 SMART SM00567 E-Z type HEAT repeats 393 424 120.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 Gene3D G3DSA:3.40.190.80 174 265 6.1E-14 T 06-07-2017 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 Pfam PF00459 Inositol monophosphatase family 7 235 3.6E-46 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 205 229 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 174 195 5.5E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 Gene3D G3DSA:3.30.540.10 5 159 5.2E-44 T 06-07-2017 APT55_RS00140 8492ee38f50fe8b4656f8cb0208016bd 271 SUPERFAMILY SSF56655 6 263 3.8E-60 T 06-07-2017 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 Pfam PF00696 Amino acid kinase family 32 268 1.9E-46 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 SUPERFAMILY SSF53633 12 292 1.23E-90 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 PRINTS PR00474 Glutamate 5-kinase family signature 188 215 1.2E-7 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 PRINTS PR00474 Glutamate 5-kinase family signature 62 76 1.2E-7 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 PRINTS PR00474 Glutamate 5-kinase family signature 241 261 1.2E-7 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 PIRSF PIRSF000728 16 291 1.7E-114 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 Hamap MF_00082_B Acetylglutamate kinase [argB]. 29 291 37.069 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 Gene3D G3DSA:3.40.1160.10 30 290 5.3E-103 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS21145 60a3449ca12dd191f7560d2f0455122e 296 TIGRFAM TIGR00761 argB: acetylglutamate kinase 32 266 2.6E-90 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS06510 edfb4610599cd42200f6d3a0a0c1d8b2 546 Gene3D G3DSA:2.70.70.10 361 511 3.8E-44 T 06-07-2017 APT55_RS06510 edfb4610599cd42200f6d3a0a0c1d8b2 546 Pfam PF01551 Peptidase family M23 409 500 8.9E-28 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS06510 edfb4610599cd42200f6d3a0a0c1d8b2 546 SUPERFAMILY SSF51261 376 509 6.28E-51 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS00815 d526e733e2f2ffd8c38b85ec9a60b326 147 SUPERFAMILY SSF101112 41 145 8.24E-19 T 06-07-2017 IPR023222 PsbQ-like domain APT55_RS00815 d526e733e2f2ffd8c38b85ec9a60b326 147 Gene3D G3DSA:1.20.120.290 40 144 2.7E-13 T 06-07-2017 IPR023222 PsbQ-like domain APT55_RS00815 d526e733e2f2ffd8c38b85ec9a60b326 147 TIGRFAM TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ 5 145 5.9E-41 T 06-07-2017 IPR017487 Photosystem II PsbQ, cyanobacteria APT55_RS05780 2a6a1e1ddcc777b510316b3c3a116858 396 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 77 152 2.9E-25 T 06-07-2017 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal APT55_RS05780 2a6a1e1ddcc777b510316b3c3a116858 396 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 161 308 7.1E-38 T 06-07-2017 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal APT55_RS05780 2a6a1e1ddcc777b510316b3c3a116858 396 Gene3D G3DSA:3.30.450.40 74 124 5.3E-4 T 06-07-2017 IPR029016 GAF domain-like APT55_RS04965 3e2cb910456616ff96346287893bce52 607 Gene3D G3DSA:3.40.50.300 1 207 2.5E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04965 3e2cb910456616ff96346287893bce52 607 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 565 3.1E-164 T 06-07-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APT55_RS04965 3e2cb910456616ff96346287893bce52 607 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 514 9.4E-14 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal APT55_RS04965 3e2cb910456616ff96346287893bce52 607 PIRSF PIRSF003128 1 580 1.4E-146 T 06-07-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APT55_RS04965 3e2cb910456616ff96346287893bce52 607 SUPERFAMILY SSF52540 352 513 3.5E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04965 3e2cb910456616ff96346287893bce52 607 SUPERFAMILY SSF52540 1 204 3.5E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04965 3e2cb910456616ff96346287893bce52 607 SUPERFAMILY SSF52540 295 323 3.5E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08350 eaf70aa19fc5dcec5a34fe01aa1bd785 278 Gene3D G3DSA:1.10.3720.10 77 272 2.2E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08350 eaf70aa19fc5dcec5a34fe01aa1bd785 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 271 3.2E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08350 eaf70aa19fc5dcec5a34fe01aa1bd785 278 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 66 268 3.2E-103 T 06-07-2017 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT55_RS08350 eaf70aa19fc5dcec5a34fe01aa1bd785 278 SUPERFAMILY SSF161098 78 264 9.81E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Pfam PF00072 Response regulator receiver domain 781 893 4.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SUPERFAMILY SSF50341 619 751 2.35E-25 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Pfam PF01584 CheW-like domain 626 753 3.4E-19 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SMART SM00260 612 751 2.5E-14 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SMART SM00448 779 893 1.2E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SUPERFAMILY SSF52172 777 897 7.26E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:3.30.565.10 437 619 2.0E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:2.30.30.40 706 751 4.2E-15 T 06-07-2017 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:2.30.30.40 620 641 4.2E-15 T 06-07-2017 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SUPERFAMILY SSF47226 3 97 2.22E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:1.20.120.160 3 102 1.8E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:1.20.120.160 147 273 2.1E-29 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SUPERFAMILY SSF55874 436 618 5.24E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SMART SM00073 147 244 7.4E-18 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SUPERFAMILY SSF47226 147 266 1.01E-24 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:1.10.287.560 324 386 9.3E-4 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SMART SM00387 477 620 4.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 SMART SM01231 323 418 0.0083 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Gene3D G3DSA:3.40.50.2300 775 897 2.1E-35 T 06-07-2017 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Pfam PF01627 Hpt domain 149 241 1.3E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 619 4.5E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 536 8.3E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 604 617 8.3E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10025 a65972fe762d4cfdd177778ce021e6a3 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 580 598 8.3E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 SUPERFAMILY SSF111369 216 359 5.62E-10 T 06-07-2017 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 231 441 1.8E-31 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 SUPERFAMILY SSF111369 82 155 1.96E-10 T 06-07-2017 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 Gene3D G3DSA:2.40.50.100 95 128 6.1E-14 T 06-07-2017 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 Gene3D G3DSA:2.40.50.100 255 287 6.1E-14 T 06-07-2017 APT55_RS24640 f7f0625219be08d239093f48c20aa42d 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 82 358 3.7E-18 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS26640 bce80d6bade61fd5fd9d4a915cb192b2 264 Gene3D G3DSA:2.160.20.10 37 253 6.2E-34 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS26640 bce80d6bade61fd5fd9d4a915cb192b2 264 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 57 135 5.9E-27 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26640 bce80d6bade61fd5fd9d4a915cb192b2 264 Pfam PF05860 haemagglutination activity domain 26 138 1.7E-35 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26640 bce80d6bade61fd5fd9d4a915cb192b2 264 SMART SM00912 27 139 6.1E-24 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26640 bce80d6bade61fd5fd9d4a915cb192b2 264 SUPERFAMILY SSF51126 33 255 6.28E-39 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS02930 e4f1d10730b429f15c6e3c7d49883244 137 Pfam PF02656 Domain of unknown function (DUF202) 20 90 3.6E-17 T 06-07-2017 IPR003807 Domain of unknown function DUF202 APT55_RS22390 2bbec167e9698268bc45b633a32ed1be 121 SMART SM00448 1 115 4.1E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22390 2bbec167e9698268bc45b633a32ed1be 121 Gene3D G3DSA:3.40.50.2300 1 119 4.0E-38 T 06-07-2017 APT55_RS22390 2bbec167e9698268bc45b633a32ed1be 121 Pfam PF00072 Response regulator receiver domain 3 114 4.8E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22390 2bbec167e9698268bc45b633a32ed1be 121 SUPERFAMILY SSF52172 1 119 5.98E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS17125 382fe33caa1f85ce9adda27d68ef5ada 358 SUPERFAMILY SSF47240 86 244 2.86E-15 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS17125 382fe33caa1f85ce9adda27d68ef5ada 358 TIGRFAM TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 15 349 1.3E-158 T 06-07-2017 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 APT55_RS17125 382fe33caa1f85ce9adda27d68ef5ada 358 Pfam PF02915 Rubrerythrin 89 222 3.2E-40 T 06-07-2017 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 APT55_RS17125 382fe33caa1f85ce9adda27d68ef5ada 358 Hamap MF_01840 Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 10 358 52.635 T 06-07-2017 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 APT55_RS17125 382fe33caa1f85ce9adda27d68ef5ada 358 Gene3D G3DSA:1.20.1260.10 80 223 4.0E-5 T 06-07-2017 IPR012347 Ferritin-related APT55_RS27825 12a0b403eaf081e76879939980d384f5 300 Gene3D G3DSA:3.40.50.150 54 106 3.5E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27825 12a0b403eaf081e76879939980d384f5 300 Gene3D G3DSA:3.40.50.150 222 273 3.5E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27825 12a0b403eaf081e76879939980d384f5 300 Pfam PF08241 Methyltransferase domain 51 99 1.2E-10 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS27825 12a0b403eaf081e76879939980d384f5 300 SUPERFAMILY SSF53335 235 274 1.77E-16 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27825 12a0b403eaf081e76879939980d384f5 300 SUPERFAMILY SSF53335 56 112 1.77E-16 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23070 6bbca0ffc2599694b83da81a4da5a504 509 TIGRFAM TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47 1 504 0.0 T 06-07-2017 IPR017486 Photosystem II CP47 reaction centre protein GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 APT55_RS23070 6bbca0ffc2599694b83da81a4da5a504 509 Hamap MF_01495 Photosystem II CP47 reaction center protein [psbB]. 1 509 61.746 T 06-07-2017 IPR017486 Photosystem II CP47 reaction centre protein GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 APT55_RS23070 6bbca0ffc2599694b83da81a4da5a504 509 SUPERFAMILY SSF161077 2 487 1.01E-214 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS23070 6bbca0ffc2599694b83da81a4da5a504 509 Pfam PF00421 Photosystem II protein 1 501 7.8E-262 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Pfam PF08479 POTRA domain, ShlB-type 220 293 5.0E-9 T 06-07-2017 IPR013686 Polypeptide-transport-associated, ShlB-type APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Pfam PF01103 Surface antigen 406 726 1.1E-57 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Gene3D G3DSA:3.10.20.310 219 293 2.1E-6 T 06-07-2017 APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Pfam PF07244 Surface antigen variable number repeat 320 378 4.3E-6 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Gene3D G3DSA:2.40.160.50 383 722 2.1E-16 T 06-07-2017 APT55_RS17840 b279dba5f27afb5381b663bcce91b5d9 726 Gene3D G3DSA:2.40.160.50 330 341 2.1E-16 T 06-07-2017 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 ProSitePatterns PS00818 Dps protein family signature 1. 38 54 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 38 54 1.4E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 135 153 1.4E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 62 78 1.4E-12 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 Pfam PF00210 Ferritin-like domain 18 158 7.9E-28 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 Gene3D G3DSA:1.20.1260.10 1 159 8.8E-60 T 06-07-2017 IPR012347 Ferritin-related APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 SUPERFAMILY SSF47240 4 158 6.77E-44 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS27170 dec043d88c04abe76b0be016037749c1 180 PIRSF PIRSF005900 1 163 1.5E-49 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS24715 c12393032495d9e2c0fdc38654dbc231 100 Gene3D G3DSA:3.30.70.330 7 97 2.1E-34 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS24715 c12393032495d9e2c0fdc38654dbc231 100 Pfam PF00276 Ribosomal protein L23 10 94 1.2E-31 T 06-07-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APT55_RS24715 c12393032495d9e2c0fdc38654dbc231 100 SUPERFAMILY SSF54189 7 98 1.01E-32 T 06-07-2017 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24715 c12393032495d9e2c0fdc38654dbc231 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 06-07-2017 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24715 c12393032495d9e2c0fdc38654dbc231 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 9 98 23.725 T 06-07-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 Gene3D G3DSA:3.40.50.1980 54 219 8.5E-57 T 06-07-2017 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00691 Adhesin B signature 84 102 7.0E-13 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00691 Adhesin B signature 103 122 7.0E-13 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00691 Adhesin B signature 59 80 7.0E-13 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00691 Adhesin B signature 225 242 7.0E-13 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00691 Adhesin B signature 273 290 7.0E-13 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 SUPERFAMILY SSF53807 59 334 2.7E-80 T 06-07-2017 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00690 Adhesin family signature 103 120 1.1E-18 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00690 Adhesin family signature 90 103 1.1E-18 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00690 Adhesin family signature 225 246 1.1E-18 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00690 Adhesin family signature 277 295 1.1E-18 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 PRINTS PR00690 Adhesin family signature 59 77 1.1E-18 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 Gene3D G3DSA:3.40.50.1980 220 335 1.8E-29 T 06-07-2017 APT55_RS15325 0eb5f1175b6a0eb080921fad855e77e7 335 Pfam PF01297 Zinc-uptake complex component A periplasmic 62 333 2.0E-74 T 06-07-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 Gene3D G3DSA:1.10.287.110 6 68 5.1E-13 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 Pfam PF00805 Pentapeptide repeats (8 copies) 266 305 5.6E-13 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 Pfam PF00805 Pentapeptide repeats (8 copies) 227 264 9.4E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 SUPERFAMILY SSF141571 217 329 4.97E-30 T 06-07-2017 APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 SUPERFAMILY SSF46565 5 68 5.5E-15 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 SMART SM00271 5 68 2.7E-13 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 Pfam PF00226 DnaJ domain 7 68 9.6E-11 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 PRINTS PR00625 DnaJ domain signature 8 26 2.0E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 PRINTS PR00625 DnaJ domain signature 48 68 2.0E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS16365 11ed525c6c703b2b629b94a11a53675b 339 PRINTS PR00625 DnaJ domain signature 26 41 2.0E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 SMART SM00363 184 246 1.5E-9 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 Gene3D G3DSA:3.10.290.10 183 237 2.1E-18 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 SUPERFAMILY SSF55174 181 240 1.7E-28 T 06-07-2017 APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 SUPERFAMILY SSF55174 60 128 1.7E-28 T 06-07-2017 APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 Pfam PF01479 S4 domain 184 230 5.0E-10 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS06880 191a27970473ddceb59e08192edb1f9a 259 TIGRFAM TIGR03069 PS_II_S4: photosystem II S4 domain protein 2 257 5.6E-112 T 06-07-2017 IPR017506 Photosystem II S4 APT55_RS01315 b71534a6779ca1c46d3360fd9917d0d8 73 ProDom PD015034 FERREDOXIN-THIOREDOXIN VARIABLE CHAIN REDUCTASE REDUCTASE SUBUNIT A THIOREDOXIN OXIDOREDUCTASE FTR-V 1 73 3.0E-29 T 06-07-2017 IPR004207 Ferredoxin thioredoxin reductase, alpha chain GO:0015979 APT55_RS01315 b71534a6779ca1c46d3360fd9917d0d8 73 SUPERFAMILY SSF50090 1 73 1.0E-29 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain APT55_RS01315 b71534a6779ca1c46d3360fd9917d0d8 73 Gene3D G3DSA:2.30.30.50 1 73 8.4E-35 T 06-07-2017 APT55_RS01315 b71534a6779ca1c46d3360fd9917d0d8 73 Pfam PF02941 Ferredoxin thioredoxin reductase variable alpha chain 3 69 7.3E-35 T 06-07-2017 IPR004207 Ferredoxin thioredoxin reductase, alpha chain GO:0015979 APT55_RS30430 23a49f1d80102a030f5a143c8c002b32 807 Gene3D G3DSA:3.30.20.10 562 595 1.1E-11 T 06-07-2017 APT55_RS30430 23a49f1d80102a030f5a143c8c002b32 807 SUPERFAMILY SSF53955 521 654 3.37E-16 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS30430 23a49f1d80102a030f5a143c8c002b32 807 Gene3D G3DSA:3.90.1720.10 676 805 8.8E-6 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain APT55_RS30430 23a49f1d80102a030f5a143c8c002b32 807 Pfam PF00182 Chitinase class I 559 597 1.8E-7 T 06-07-2017 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 APT55_RS19610 f1de382b74067f137650e79717c342b7 168 Pfam PF05163 DinB family 1 158 3.9E-33 T 06-07-2017 IPR007837 DNA damage-inducible protein DinB APT55_RS19610 f1de382b74067f137650e79717c342b7 168 Gene3D G3DSA:1.20.120.450 1 163 2.9E-43 T 06-07-2017 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase APT55_RS19610 f1de382b74067f137650e79717c342b7 168 SUPERFAMILY SSF109854 5 149 2.9E-38 T 06-07-2017 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 247 1.0E-31 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 SUPERFAMILY SSF88659 170 253 9.35E-14 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Gene3D G3DSA:1.10.10.10 191 251 1.3E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Pfam PF04539 Sigma-70 region 3 117 182 1.5E-7 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Gene3D G3DSA:1.10.10.10 100 152 6.9E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 SUPERFAMILY SSF88659 104 181 7.85E-14 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Pfam PF08281 Sigma-70, region 4 194 247 6.4E-14 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 SUPERFAMILY SSF88946 12 99 3.45E-28 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Gene3D G3DSA:1.10.601.10 23 99 1.6E-19 T 06-07-2017 APT55_RS08645 1aface2d2b8b99614c882d3c51a2cf5c 260 Pfam PF04542 Sigma-70 region 2 30 99 5.4E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 SUPERFAMILY SSF140869 188 328 4.97E-42 T 06-07-2017 APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 SUPERFAMILY SSF52200 4 143 3.66E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 SMART SM00255 2 138 5.9E-14 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 Gene3D G3DSA:3.40.50.10140 5 123 5.9E-13 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 Pfam PF05419 GUN4-like 187 314 9.9E-40 T 06-07-2017 IPR008629 GUN4-like APT55_RS26360 1f2dc55de5b64602020b2bdb20d45821 334 Pfam PF13676 TIR domain 5 114 1.2E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SMART SM00304 618 669 4.1 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SMART SM00304 373 425 1.8E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SMART SM00065 456 607 1.1E-16 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 Gene3D G3DSA:1.10.287.950 698 916 1.3E-44 T 06-07-2017 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SUPERFAMILY SSF58104 644 950 1.28E-59 T 06-07-2017 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 Pfam PF01590 GAF domain 459 597 7.1E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SMART SM00283 684 945 1.5E-59 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SUPERFAMILY SSF158472 373 422 3.66E-10 T 06-07-2017 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 SUPERFAMILY SSF55781 436 607 9.16E-31 T 06-07-2017 IPR029016 GAF domain-like APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 Pfam PF00672 HAMP domain 355 421 2.0E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 749 944 9.9E-41 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS18255 9aa2cc367116694ed2dfe65cc5cb2378 954 Gene3D G3DSA:3.30.450.40 442 600 2.3E-23 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 7.9E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 7.9E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 7.9E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 Gene3D G3DSA:1.10.10.10 124 205 2.4E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 Gene3D G3DSA:3.40.50.2300 4 123 2.9E-40 T 06-07-2017 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 SUPERFAMILY SSF52172 5 132 3.98E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 Pfam PF00072 Response regulator receiver domain 7 119 3.5E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 SMART SM00421 142 199 6.6E-27 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 SMART SM00448 5 118 4.9E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 199 7.3E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 SUPERFAMILY SSF46894 139 205 9.18E-23 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS28530 bc9be7311d091dffc8739b8687f7dd84 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 Gene3D G3DSA:3.40.1010.10 208 325 1.4E-27 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 209 420 1.6E-35 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 Gene3D G3DSA:3.30.950.10 326 436 4.8E-14 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 SUPERFAMILY SSF53790 207 447 5.63E-50 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 SUPERFAMILY SSF159672 4 204 1.31E-43 T 06-07-2017 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 210 456 2.3E-91 T 06-07-2017 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 APT55_RS27130 99d436b75ae49725232b48185fba80f2 459 Pfam PF11760 Cobalamin synthesis G N-terminal 49 129 1.8E-27 T 06-07-2017 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 APT55_RS21990 0ef317833f766469488cdc2b4549409c 165 Gene3D G3DSA:3.40.630.30 5 153 5.8E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS21990 0ef317833f766469488cdc2b4549409c 165 SUPERFAMILY SSF55729 5 145 1.24E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS21990 0ef317833f766469488cdc2b4549409c 165 Pfam PF00583 Acetyltransferase (GNAT) family 60 137 1.7E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS09900 5863b5a5d662ef392032c0e242c46ae3 636 SUPERFAMILY SSF52540 160 368 1.79E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09900 5863b5a5d662ef392032c0e242c46ae3 636 Gene3D G3DSA:3.40.50.300 156 368 1.4E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09900 5863b5a5d662ef392032c0e242c46ae3 636 Pfam PF13481 AAA domain 145 317 3.7E-24 T 06-07-2017 APT55_RS09900 5863b5a5d662ef392032c0e242c46ae3 636 SUPERFAMILY SSF46785 393 452 1.51E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09900 5863b5a5d662ef392032c0e242c46ae3 636 Gene3D G3DSA:1.10.10.10 406 450 1.4E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 SUPERFAMILY SSF56266 14 415 2.75E-135 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 418 154.217 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 Pfam PF01960 ArgJ family 18 418 8.5E-151 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 Gene3D G3DSA:3.60.70.12 8 277 2.5E-102 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 25 418 3.0E-168 T 06-07-2017 APT55_RS17590 4b3b5c750448a35ebd9443e8109e1222 418 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 7 418 6.3E-163 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 SMART SM01130 3 291 1.2E-137 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 06-07-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 5.9E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 5.9E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 5.9E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 5.9E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 PIRSF PIRSF001365 1 297 2.5E-92 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 Pfam PF00701 Dihydrodipicolinate synthetase family 4 288 4.3E-106 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 289 64.916 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 289 3.5E-114 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 SUPERFAMILY SSF51569 3 293 4.4E-101 T 06-07-2017 APT55_RS16660 a0802f2d2972c675f37448c119bbccb2 298 Gene3D G3DSA:3.20.20.70 3 294 1.7E-117 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 Gene3D G3DSA:1.10.510.10 74 264 4.3E-34 T 06-07-2017 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 137 149 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 SMART SM00220 12 265 1.1E-17 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 Pfam PF00069 Protein kinase domain 14 253 3.0E-28 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 Gene3D G3DSA:3.30.200.20 4 73 3.9E-12 T 06-07-2017 APT55_RS01185 7c47798df5e27f8faa372c4f74a25a90 442 SUPERFAMILY SSF56112 6 264 1.08E-47 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 Gene3D G3DSA:1.25.40.10 62 144 3.9E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 Gene3D G3DSA:1.25.40.10 145 236 7.9E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 Pfam PF13181 Tetratricopeptide repeat 159 188 0.14 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SUPERFAMILY SSF48452 65 235 5.31E-36 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SMART SM00028 158 191 0.012 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SMART SM00028 124 157 3.4E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SMART SM00028 203 236 0.014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SMART SM00028 56 89 240.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 SMART SM00028 90 123 8.2E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27335 392483487da0015918ef7edd7d59cf89 257 Pfam PF13414 TPR repeat 97 138 3.4E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08970 673270021804c437016169ebf00f81a5 303 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 217 281 3.3E-9 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT55_RS08970 673270021804c437016169ebf00f81a5 303 Gene3D G3DSA:3.30.70.1400 15 100 8.9E-8 T 06-07-2017 APT55_RS08970 673270021804c437016169ebf00f81a5 303 Pfam PF01571 Aminomethyltransferase folate-binding domain 5 209 2.3E-22 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal APT55_RS08970 673270021804c437016169ebf00f81a5 303 SUPERFAMILY SSF103025 4 229 3.61E-48 T 06-07-2017 APT55_RS08970 673270021804c437016169ebf00f81a5 303 PIRSF PIRSF006487 1 292 6.0E-21 T 06-07-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APT55_RS08970 673270021804c437016169ebf00f81a5 303 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 179 242 1.6E-19 T 06-07-2017 IPR017703 YgfZ/GcvT conserved site APT55_RS15070 70a0ed6dbfab2f30c1c6ee5e0b8022a5 302 Pfam PF00535 Glycosyl transferase family 2 4 125 1.3E-26 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS15070 70a0ed6dbfab2f30c1c6ee5e0b8022a5 302 SUPERFAMILY SSF53448 1 227 7.97E-42 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS15070 70a0ed6dbfab2f30c1c6ee5e0b8022a5 302 Gene3D G3DSA:3.90.550.10 3 230 9.7E-40 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25540 d15582923db0c2d6d1f970715b493c7f 311 Pfam PF02485 Core-2/I-Branching enzyme 47 270 5.6E-15 T 06-07-2017 IPR003406 Glycosyl transferase, family 14 GO:0008375|GO:0016020 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SMART SM00306 133 227 3.8E-20 T 06-07-2017 IPR003587 Hint domain N-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:2.170.16.10 136 236 2.7E-37 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:2.170.16.10 599 635 2.7E-37 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SUPERFAMILY SSF51294 135 235 3.34E-32 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SUPERFAMILY SSF51294 582 646 3.34E-32 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SUPERFAMILY SSF48019 763 886 3.32E-21 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 644 875 3.5E-63 T 06-07-2017 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 8 135 4.8E-60 T 06-07-2017 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SUPERFAMILY SSF52540 11 136 2.1E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 751 888 1.9E-15 T 06-07-2017 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:3.40.50.300 8 135 2.4E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SUPERFAMILY SSF52540 642 749 1.47E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:1.10.8.60 686 760 2.0E-27 T 06-07-2017 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 PRINTS PR00379 Intein signature 194 207 1.0E-5 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 PRINTS PR00379 Intein signature 623 640 1.0E-5 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 PRINTS PR00379 Intein signature 641 650 1.0E-5 T 06-07-2017 IPR006142 Intein GO:0016539 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Pfam PF14890 Intein splicing domain 110 646 1.4E-15 T 06-07-2017 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:3.40.50.300 636 685 3.5E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 625 647 2.0E-11 T 06-07-2017 IPR030934 Intein C-terminal splicing region APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 TIGRFAM TIGR01445 intein_Nterm: intein N-terminal splicing region 135 207 5.3E-8 T 06-07-2017 IPR006141 Intein N-terminal splicing region GO:0016539 Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 SMART SM00305 607 652 1.5E-11 T 06-07-2017 IPR003586 Hint domain C-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Gene3D G3DSA:1.20.272.10 761 877 2.2E-14 T 06-07-2017 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Pfam PF13177 DNA polymerase III, delta subunit 643 697 5.5E-16 T 06-07-2017 APT55_RS21600 1b06ef7c969073e79e132d984fe072f5 1133 Pfam PF13177 DNA polymerase III, delta subunit 25 134 6.0E-21 T 06-07-2017 APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 SUPERFAMILY SSF63411 295 445 1.07E-28 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 Pfam PF05193 Peptidase M16 inactive domain 181 379 5.5E-29 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 46 69 - T 06-07-2017 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 Gene3D G3DSA:3.30.830.10 17 224 2.0E-59 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 Pfam PF00675 Insulinase (Peptidase family M16) 31 172 1.2E-31 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 Gene3D G3DSA:3.30.830.10 296 443 6.1E-24 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS19270 1ffbc7ed32974675c2816de6c707d3f7 447 SUPERFAMILY SSF63411 14 224 1.58E-62 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 SMART SM00825 Beta-ketoacyl synthase 9 406 9.6E-15 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 Gene3D G3DSA:3.40.47.10 267 416 7.6E-59 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 PIRSF PIRSF000447 4 417 8.5E-190 T 06-07-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 7 413 5.3E-194 T 06-07-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 SUPERFAMILY SSF53901 6 255 1.07E-76 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 372 3.1E-37 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 SUPERFAMILY SSF53901 217 415 1.38E-72 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 Gene3D G3DSA:3.40.47.10 3 263 7.4E-78 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS22585 135e2deb54e830340d6fee32fc14aaca 417 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 7 250 1.5E-57 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal APT55_RS10730 559025f63680df1fffaf67d94f544224 634 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 373 396 - T 06-07-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 SMART SM01228 550 621 4.4E-42 T 06-07-2017 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 Pfam PF13932 GidA associated domain 407 619 1.3E-69 T 06-07-2017 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 SUPERFAMILY SSF51905 101 266 1.05E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 SUPERFAMILY SSF51905 11 70 1.05E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 Gene3D G3DSA:3.50.50.60 11 229 2.5E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 11 626 1.9E-279 T 06-07-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 278 292 - T 06-07-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 Pfam PF01134 Glucose inhibited division protein A 12 404 3.0E-157 T 06-07-2017 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 APT55_RS10730 559025f63680df1fffaf67d94f544224 634 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 9 628 40.216 T 06-07-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 APT55_RS29730 b0aeb43e21fe706ccc18b7a830fbe487 166 Pfam PF00990 Diguanylate cyclase, GGDEF domain 34 118 1.7E-5 T 06-07-2017 IPR000160 GGDEF domain APT55_RS29730 b0aeb43e21fe706ccc18b7a830fbe487 166 SUPERFAMILY SSF55073 46 152 1.96E-6 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS29730 b0aeb43e21fe706ccc18b7a830fbe487 166 Gene3D G3DSA:3.30.70.270 35 152 5.6E-7 T 06-07-2017 APT55_RS27470 50eec4722d8c37406efff6936486881a 417 SUPERFAMILY SSF53300 85 140 3.12E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27470 50eec4722d8c37406efff6936486881a 417 SUPERFAMILY SSF53300 298 335 3.12E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27470 50eec4722d8c37406efff6936486881a 417 SUPERFAMILY SSF53300 171 268 3.12E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27470 50eec4722d8c37406efff6936486881a 417 Pfam PF00092 von Willebrand factor type A domain 90 295 3.2E-5 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27470 50eec4722d8c37406efff6936486881a 417 SMART SM00327 86 330 1.4E-5 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27470 50eec4722d8c37406efff6936486881a 417 Gene3D G3DSA:3.40.50.410 86 325 2.6E-7 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS19955 8b9aece2958c51e773f2910393cb9f15 260 Gene3D G3DSA:3.60.20.10 1 251 1.7E-63 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS19955 8b9aece2958c51e773f2910393cb9f15 260 SUPERFAMILY SSF56235 2 251 4.25E-46 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS19955 8b9aece2958c51e773f2910393cb9f15 260 Pfam PF13230 Glutamine amidotransferases class-II 1 256 2.4E-119 T 06-07-2017 IPR026869 Putative glutamine amidotransferase type 2 APT55_RS20710 1df050f09dcffcb0f35c9f053849e190 237 PIRSF PIRSF018008 1 237 5.9E-89 T 06-07-2017 IPR008306 Uncharacterised conserved protein UCP018008 APT55_RS20710 1df050f09dcffcb0f35c9f053849e190 237 Pfam PF04250 Protein of unknown function (DUF429) 5 219 1.1E-34 T 06-07-2017 IPR007362 Protein of unknown function DUF429 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 Pfam PF00366 Ribosomal protein S17 8 75 7.5E-33 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 8.3E-14 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 8.3E-14 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 8.3E-14 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 SUPERFAMILY SSF50249 4 79 2.7E-32 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 Gene3D G3DSA:2.40.50.140 3 79 6.4E-35 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 06-07-2017 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 73 4.0E-32 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 79 24.777 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24750 56aa4ee079e32c072a2f64b0348aaa6b 81 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 4 73 6.8E-35 T 06-07-2017 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS12445 883332ab0338f451437bbf89b041310b 141 SUPERFAMILY SSF88723 1 129 4.77E-20 T 06-07-2017 IPR029060 PIN domain-like APT55_RS12445 883332ab0338f451437bbf89b041310b 141 Pfam PF13470 PIN domain 2 116 1.3E-17 T 06-07-2017 IPR002716 PIN domain APT55_RS12445 883332ab0338f451437bbf89b041310b 141 Gene3D G3DSA:3.40.50.1010 1 121 1.1E-9 T 06-07-2017 IPR029060 PIN domain-like APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 11 242 1.7E-95 T 06-07-2017 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 Pfam PF13353 4Fe-4S single cluster domain 22 134 4.4E-16 T 06-07-2017 APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 SUPERFAMILY SSF102114 27 218 2.75E-29 T 06-07-2017 APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 Pfam PF04055 Radical SAM superfamily 29 184 1.1E-25 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 Gene3D G3DSA:3.80.30.10 74 247 3.4E-66 T 06-07-2017 APT55_RS11760 0802eddc7e73c6234a71bf80c053a77e 248 ProSitePatterns PS01087 Radical activating enzymes signature. 23 44 - T 06-07-2017 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 APT55_RS15005 25b11bba29892d6cd51cfccb757ca410 352 Pfam PF00534 Glycosyl transferases group 1 168 328 2.8E-35 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15005 25b11bba29892d6cd51cfccb757ca410 352 Pfam PF13439 Glycosyltransferase Family 4 67 167 1.3E-8 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS15005 25b11bba29892d6cd51cfccb757ca410 352 Gene3D G3DSA:3.40.50.2000 175 329 1.9E-24 T 06-07-2017 APT55_RS15005 25b11bba29892d6cd51cfccb757ca410 352 SUPERFAMILY SSF53756 8 350 5.02E-76 T 06-07-2017 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 6 132 9.3E-36 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 9 23 1.8E-9 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 80 88 1.8E-9 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 98 1.8E-9 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 6 129 1.1E-33 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 6 136 22.46 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS11180 8044a1aab21723a0b6017c6b383924eb 136 SUPERFAMILY SSF81330 15 106 6.8E-27 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 SUPERFAMILY SSF47090 81 147 3.4E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 SUPERFAMILY SSF47090 13 77 9.16E-20 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 Gene3D G3DSA:1.10.101.10 82 147 3.7E-14 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 Gene3D G3DSA:1.10.101.10 14 77 6.9E-22 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 Pfam PF01471 Putative peptidoglycan binding domain 92 146 7.5E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS01175 d83c7f9c3bd72418381f7b0602181994 169 Pfam PF01471 Putative peptidoglycan binding domain 20 75 1.9E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 SUPERFAMILY SSF51735 7 330 1.91E-100 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 Gene3D G3DSA:3.40.50.720 7 177 1.3E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 Gene3D G3DSA:3.90.25.10 261 330 9.7E-45 T 06-07-2017 APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 Gene3D G3DSA:3.90.25.10 178 229 9.7E-45 T 06-07-2017 APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 259 5.6E-57 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS13185 a0ff80d3b4107466f05ff696b8ab724b 332 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 8 330 1.7E-138 T 06-07-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS28395 ecf68550322948301386fb329137dd84 450 SUPERFAMILY SSF52540 118 364 1.06E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28395 ecf68550322948301386fb329137dd84 450 Pfam PF14516 AAA-like domain 118 447 1.7E-139 T 06-07-2017 APT55_RS28395 ecf68550322948301386fb329137dd84 450 Gene3D G3DSA:3.40.50.300 155 278 1.1E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25550 9820966c5aede822d698f64045779b7c 209 SMART SM00474 1 177 1.4E-41 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT55_RS25550 9820966c5aede822d698f64045779b7c 209 SUPERFAMILY SSF53098 16 199 9.83E-56 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25550 9820966c5aede822d698f64045779b7c 209 Gene3D G3DSA:3.30.420.10 14 184 9.8E-27 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25550 9820966c5aede822d698f64045779b7c 209 Pfam PF01612 3'-5' exonuclease 10 177 1.9E-43 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT55_RS09465 4134c398b73588f03259e2b34925d7cf 140 SUPERFAMILY SSF54427 1 139 1.89E-72 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS09465 4134c398b73588f03259e2b34925d7cf 140 Gene3D G3DSA:3.10.450.50 12 139 6.7E-68 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS09465 4134c398b73588f03259e2b34925d7cf 140 Pfam PF07080 Protein of unknown function (DUF1348) 4 139 2.9E-71 T 06-07-2017 IPR009783 Protein of unknown function DUF1348 APT55_RS28950 07c289b6c2c7e5ec5f2a9f506486be63 222 Gene3D G3DSA:3.40.1760.10 1 205 2.9E-19 T 06-07-2017 IPR015068 Protein of unknown function DUF1877 APT55_RS28950 07c289b6c2c7e5ec5f2a9f506486be63 222 SUPERFAMILY SSF111069 59 206 2.48E-9 T 06-07-2017 IPR015068 Protein of unknown function DUF1877 APT55_RS28950 07c289b6c2c7e5ec5f2a9f506486be63 222 Pfam PF08974 Domain of unknown function (DUF1877) 1 205 2.5E-13 T 06-07-2017 IPR015068 Protein of unknown function DUF1877 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 SUPERFAMILY SSF49503 67 197 7.99E-31 T 06-07-2017 IPR008972 Cupredoxin APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 Pfam PF07732 Multicopper oxidase 95 197 6.5E-18 T 06-07-2017 IPR011707 Multicopper oxidase, type 3 GO:0005507 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 Gene3D G3DSA:2.60.40.420 196 328 2.4E-16 T 06-07-2017 IPR008972 Cupredoxin APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 Gene3D G3DSA:2.60.40.420 74 195 6.1E-29 T 06-07-2017 IPR008972 Cupredoxin APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 Pfam PF07731 Multicopper oxidase 221 327 3.9E-13 T 06-07-2017 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 PRINTS PR00695 Copper containing nitrite reductase signature 105 121 9.4E-5 T 06-07-2017 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 PRINTS PR00695 Copper containing nitrite reductase signature 162 177 9.4E-5 T 06-07-2017 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 PRINTS PR00695 Copper containing nitrite reductase signature 179 195 9.4E-5 T 06-07-2017 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APT55_RS10080 cfca5845d50d5046c624af3f835427d9 333 SUPERFAMILY SSF49503 200 328 6.0E-20 T 06-07-2017 IPR008972 Cupredoxin APT55_RS27730 fd6d4309b2184bd46417c0f5df8dfaa8 232 SUPERFAMILY SSF51182 1 231 5.65E-78 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS27730 fd6d4309b2184bd46417c0f5df8dfaa8 232 PIRSF PIRSF006232 1 230 3.4E-58 T 06-07-2017 IPR012093 Pirin APT55_RS27730 fd6d4309b2184bd46417c0f5df8dfaa8 232 Pfam PF02678 Pirin 9 119 8.7E-38 T 06-07-2017 IPR003829 Pirin, N-terminal domain APT55_RS27730 fd6d4309b2184bd46417c0f5df8dfaa8 232 Gene3D G3DSA:2.60.120.10 4 231 8.8E-72 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS14495 e592cf8f1141663aa03dc8851edaeff1 310 SUPERFAMILY SSF53448 250 263 4.41E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS14495 e592cf8f1141663aa03dc8851edaeff1 310 SUPERFAMILY SSF53448 10 210 4.41E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS14495 e592cf8f1141663aa03dc8851edaeff1 310 Gene3D G3DSA:3.90.550.10 10 214 3.4E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS14495 e592cf8f1141663aa03dc8851edaeff1 310 Pfam PF00535 Glycosyl transferase family 2 11 121 2.1E-15 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS20805 6a782be072c669fe89b66f2a22be1533 722 Pfam PF13576 Pentapeptide repeats (9 copies) 236 283 4.4E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20805 6a782be072c669fe89b66f2a22be1533 722 Pfam PF13576 Pentapeptide repeats (9 copies) 295 339 1.3E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20805 6a782be072c669fe89b66f2a22be1533 722 SUPERFAMILY SSF47781 416 478 5.11E-6 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 SUPERFAMILY SSF53850 40 264 5.59E-63 T 06-07-2017 APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 Gene3D G3DSA:3.40.190.10 120 223 8.5E-35 T 06-07-2017 APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 Gene3D G3DSA:3.40.190.10 40 113 6.7E-11 T 06-07-2017 APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 PIRSF PIRSF004846 7 265 4.0E-66 T 06-07-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 Pfam PF13531 Bacterial extracellular solute-binding protein 41 261 2.1E-49 T 06-07-2017 APT55_RS11720 b0d551502bee3f572d2e1827714ee0e1 271 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 46 260 1.1E-56 T 06-07-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SUPERFAMILY SSF48452 39 149 8.13E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 280 313 12.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 40 73 35.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 160 193 0.092 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 80 113 33.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 120 153 0.43 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 240 273 27.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SMART SM00028 200 233 2.4E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 Pfam PF13424 Tetratricopeptide repeat 82 151 1.9E-11 T 06-07-2017 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 Pfam PF13424 Tetratricopeptide repeat 160 230 1.5E-13 T 06-07-2017 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 SUPERFAMILY SSF48452 120 275 9.48E-28 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 Gene3D G3DSA:1.25.40.10 181 346 4.9E-28 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28055 30ac9c424ea059f211d208477f139407 349 Gene3D G3DSA:1.25.40.10 39 180 2.1E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10175 da2b7eb41fdb30f0862fbb43ab6899a7 293 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 30 292 7.1E-85 T 06-07-2017 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 APT55_RS10175 da2b7eb41fdb30f0862fbb43ab6899a7 293 Gene3D G3DSA:1.10.3720.10 32 293 2.2E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10175 da2b7eb41fdb30f0862fbb43ab6899a7 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 292 1.2E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10175 da2b7eb41fdb30f0862fbb43ab6899a7 293 SUPERFAMILY SSF161098 38 285 5.89E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS28205 856b2d84c0e764e7cb314530fade7895 323 Pfam PF01791 DeoC/LacD family aldolase 39 286 1.8E-32 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS28205 856b2d84c0e764e7cb314530fade7895 323 Gene3D G3DSA:3.20.20.70 17 307 8.1E-75 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS28205 856b2d84c0e764e7cb314530fade7895 323 SMART SM01133 38 286 8.3E-40 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS28205 856b2d84c0e764e7cb314530fade7895 323 SUPERFAMILY SSF51569 18 302 6.41E-61 T 06-07-2017 APT55_RS28205 856b2d84c0e764e7cb314530fade7895 323 PIRSF PIRSF038992 18 315 5.4E-64 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 Gene3D G3DSA:3.90.780.10 346 516 1.6E-28 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 Gene3D G3DSA:3.60.21.10 40 330 4.9E-66 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 PRINTS PR01607 Apyrase family signature 236 259 2.3E-18 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 PRINTS PR01607 Apyrase family signature 217 234 2.3E-18 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 PRINTS PR01607 Apyrase family signature 464 483 2.3E-18 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 PRINTS PR01607 Apyrase family signature 43 61 2.3E-18 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 PRINTS PR01607 Apyrase family signature 402 425 2.3E-18 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 ProSitePatterns PS00786 5'-nucleotidase signature 2. 122 133 - T 06-07-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 SUPERFAMILY SSF55816 344 517 6.02E-29 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 Pfam PF02872 5'-nucleotidase, C-terminal domain 346 484 1.7E-22 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 Pfam PF00149 Calcineurin-like phosphoesterase 46 253 6.1E-9 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS19945 51ea463ed7c1b4364dd07c5a2a967a4d 518 SUPERFAMILY SSF56300 43 330 9.7E-64 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS02780 e483caaf7557b60b3c78cc8867aac054 362 SMART SM00062 64 285 2.2E-4 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS02780 e483caaf7557b60b3c78cc8867aac054 362 Gene3D G3DSA:3.40.190.10 150 270 2.8E-19 T 06-07-2017 APT55_RS02780 e483caaf7557b60b3c78cc8867aac054 362 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 76 345 2.7E-53 T 06-07-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 APT55_RS02780 e483caaf7557b60b3c78cc8867aac054 362 SUPERFAMILY SSF53850 62 287 5.78E-41 T 06-07-2017 APT55_RS02780 e483caaf7557b60b3c78cc8867aac054 362 Pfam PF13379 NMT1-like family 62 290 2.0E-14 T 06-07-2017 APT55_RS17375 8d7bb06b1158a76a61328529dcc49440 59 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 06-07-2017 IPR000612 Proteolipid membrane potential modulator GO:0016021 APT55_RS17375 8d7bb06b1158a76a61328529dcc49440 59 Pfam PF01679 Proteolipid membrane potential modulator 3 49 2.7E-20 T 06-07-2017 IPR000612 Proteolipid membrane potential modulator GO:0016021 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF00512 His Kinase A (phospho-acceptor) domain 338 405 6.3E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Gene3D G3DSA:3.40.50.2300 586 701 4.0E-33 T 06-07-2017 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SMART SM00387 451 563 2.0E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF00072 Response regulator receiver domain 712 796 7.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF00072 Response regulator receiver domain 592 700 1.1E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF00672 HAMP domain 223 299 2.9E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 452 562 3.0E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Gene3D G3DSA:3.40.50.2300 707 830 1.5E-31 T 06-07-2017 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SUPERFAMILY SSF52172 589 703 1.71E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Gene3D G3DSA:3.30.565.10 391 561 5.0E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 541 1.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 516 1.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 502 1.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 560 1.8E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SMART SM00448 710 824 5.7E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SMART SM00448 590 700 1.6E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SUPERFAMILY SSF47384 325 406 2.35E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Gene3D G3DSA:1.10.287.130 330 390 2.1E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SUPERFAMILY SSF55874 394 562 9.17E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SUPERFAMILY SSF52172 705 828 1.71E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 Pfam PF11845 Protein of unknown function (DUF3365) 17 205 3.6E-41 T 06-07-2017 IPR021796 Protein of unknown function DUF3365 APT55_RS01900 9a7f0af58f524b397e4c2aa91bb5dcaa 833 SMART SM00388 337 405 4.0E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22015 6a3bfec57ee51da7d2212db8cb07586e 393 Gene3D G3DSA:3.40.50.300 1 115 1.1E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22015 6a3bfec57ee51da7d2212db8cb07586e 393 Gene3D G3DSA:3.40.50.300 203 351 1.1E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22015 6a3bfec57ee51da7d2212db8cb07586e 393 Pfam PF13175 AAA ATPase domain 1 343 8.8E-24 T 06-07-2017 APT55_RS22015 6a3bfec57ee51da7d2212db8cb07586e 393 SUPERFAMILY SSF52540 1 98 1.13E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22015 6a3bfec57ee51da7d2212db8cb07586e 393 SUPERFAMILY SSF52540 192 347 1.13E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 SUPERFAMILY SSF52317 1 227 5.84E-78 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 PIRSF PIRSF001586 1 230 3.2E-88 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 226 45.097 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 4 211 1.2E-46 T 06-07-2017 APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 226 2.1E-97 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 Gene3D G3DSA:3.40.50.880 1 227 6.2E-39 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS06900 dedeb168dc6cd4a21ea9ad326bceddf3 232 SMART SM01211 1 228 2.4E-138 T 06-07-2017 APT55_RS26015 bbbd9d5f26ff7dd7202fd6b9e206de5f 46 Pfam PF04255 Protein of unknown function (DUF433) 6 42 1.2E-10 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS26015 bbbd9d5f26ff7dd7202fd6b9e206de5f 46 Gene3D G3DSA:1.10.10.10 5 42 7.2E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26015 bbbd9d5f26ff7dd7202fd6b9e206de5f 46 SUPERFAMILY SSF46689 3 46 2.51E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 SUPERFAMILY SSF52016 380 558 5.65E-59 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 557 4.5E-243 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 SUPERFAMILY SSF143975 3 378 2.09E-136 T 06-07-2017 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 Pfam PF00920 Dehydratase family 35 554 5.4E-213 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS26790 59cc437cbc35d92c134a2320aa898694 561 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 5 557 45.976 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS18380 23a79ee7b82d73ee06254ba90cb9f4c5 256 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 254 2.6E-120 T 06-07-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 APT55_RS18380 23a79ee7b82d73ee06254ba90cb9f4c5 256 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 254 48.95 T 06-07-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 APT55_RS18380 23a79ee7b82d73ee06254ba90cb9f4c5 256 Gene3D G3DSA:3.20.20.70 4 254 3.2E-103 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS18380 23a79ee7b82d73ee06254ba90cb9f4c5 256 SUPERFAMILY SSF51366 1 254 5.81E-82 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS18380 23a79ee7b82d73ee06254ba90cb9f4c5 256 Pfam PF00977 Histidine biosynthesis protein 5 237 4.9E-91 T 06-07-2017 IPR006062 Histidine biosynthesis GO:0000105 APT55_RS29025 e44b6adff57eb0f3333a37fb847e201f 185 Pfam PF12804 MobA-like NTP transferase domain 5 153 1.9E-34 T 06-07-2017 IPR025877 MobA-like NTP transferase APT55_RS29025 e44b6adff57eb0f3333a37fb847e201f 185 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 183 23.337 T 06-07-2017 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 APT55_RS29025 e44b6adff57eb0f3333a37fb847e201f 185 SUPERFAMILY SSF53448 1 180 1.29E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS29025 e44b6adff57eb0f3333a37fb847e201f 185 Gene3D G3DSA:3.90.550.10 1 183 3.3E-50 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22190 63f789c055e69f0817ea38832a78ee3d 126 Gene3D G3DSA:3.40.50.2300 3 121 2.7E-33 T 06-07-2017 APT55_RS22190 63f789c055e69f0817ea38832a78ee3d 126 SMART SM00448 3 117 8.9E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22190 63f789c055e69f0817ea38832a78ee3d 126 SUPERFAMILY SSF52172 3 122 3.42E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22190 63f789c055e69f0817ea38832a78ee3d 126 Pfam PF00072 Response regulator receiver domain 5 117 3.5E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26460 3a012a55ecef774b92491b2113b98f62 203 SUPERFAMILY SSF53335 47 191 7.3E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26460 3a012a55ecef774b92491b2113b98f62 203 Gene3D G3DSA:3.40.50.150 55 179 1.1E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26460 3a012a55ecef774b92491b2113b98f62 203 Pfam PF13847 Methyltransferase domain 70 133 1.4E-9 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 SUPERFAMILY SSF48371 18 47 2.54E-5 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 Gene3D G3DSA:1.25.10.10 20 46 8.9E-5 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 SUPERFAMILY SSF48452 58 166 2.06E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 Pfam PF00515 Tetratricopeptide repeat 88 119 6.9E-12 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 Pfam PF00515 Tetratricopeptide repeat 124 153 2.3E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 SMART SM00028 122 155 2.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 SMART SM00028 54 87 320.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 SMART SM00028 88 121 6.2E-9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS15110 75fca8a599c650ffcd6c287e6a5f5a56 170 Gene3D G3DSA:1.25.40.10 59 157 5.8E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Pfam PF00512 His Kinase A (phospho-acceptor) domain 171 267 3.5E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SUPERFAMILY SSF47384 165 206 9.02E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SUPERFAMILY SSF47384 236 268 9.02E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Gene3D G3DSA:1.10.287.130 235 264 4.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Gene3D G3DSA:1.10.287.130 166 197 4.1E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Pfam PF00072 Response regulator receiver domain 7 118 5.8E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Gene3D G3DSA:3.40.50.2300 4 133 5.8E-40 T 06-07-2017 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SMART SM00448 5 118 1.6E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SMART SM00387 313 435 2.3E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SUPERFAMILY SSF55874 258 433 1.03E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SMART SM00388 171 268 0.0037 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 SUPERFAMILY SSF52172 7 164 1.71E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 391 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 412 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 377 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 432 1.6E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 316 433 5.8E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09720 89dc757b62be39e988ea7e86ad647a5c 436 Gene3D G3DSA:3.30.565.10 265 433 2.6E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS25510 5d2f55aed002137d3eeef0754eeda1bc 378 Pfam PF13439 Glycosyltransferase Family 4 51 176 5.9E-11 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS25510 5d2f55aed002137d3eeef0754eeda1bc 378 SUPERFAMILY SSF53756 17 357 6.28E-54 T 06-07-2017 APT55_RS25510 5d2f55aed002137d3eeef0754eeda1bc 378 Pfam PF13692 Glycosyl transferases group 1 190 323 1.7E-22 T 06-07-2017 APT55_RS25510 5d2f55aed002137d3eeef0754eeda1bc 378 Gene3D G3DSA:3.40.50.2000 157 335 1.4E-18 T 06-07-2017 APT55_RS00135 45583ad9c98d7b447a979959ef0170c2 258 SUPERFAMILY SSF101852 163 252 3.79E-23 T 06-07-2017 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal APT55_RS00135 45583ad9c98d7b447a979959ef0170c2 258 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 3 251 1.3E-84 T 06-07-2017 IPR002747 SAM-dependent chlorinase/fluorinase APT55_RS00135 45583ad9c98d7b447a979959ef0170c2 258 SUPERFAMILY SSF102522 2 159 9.15E-59 T 06-07-2017 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal APT55_RS00135 45583ad9c98d7b447a979959ef0170c2 258 PIRSF PIRSF006779 1 256 9.8E-84 T 06-07-2017 IPR002747 SAM-dependent chlorinase/fluorinase APT55_RS00135 45583ad9c98d7b447a979959ef0170c2 258 Gene3D G3DSA:2.40.30.90 160 251 3.1E-21 T 06-07-2017 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal APT55_RS02300 55198332c7965a59d58142c6ec83b40f 158 Pfam PF13301 Protein of unknown function (DUF4079) 24 158 7.5E-25 T 06-07-2017 IPR025067 Protein of unknown function DUF4079 APT55_RS05070 3f46a728c86267a8e17976b1f2a7d015 491 Gene3D G3DSA:3.20.20.80 2 490 1.5E-178 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS05070 3f46a728c86267a8e17976b1f2a7d015 491 Pfam PF02446 4-alpha-glucanotransferase 10 468 2.2E-164 T 06-07-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS05070 3f46a728c86267a8e17976b1f2a7d015 491 SUPERFAMILY SSF51445 4 490 1.55E-171 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS05070 3f46a728c86267a8e17976b1f2a7d015 491 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 3 490 1.3E-127 T 06-07-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS09570 857d8e66b550bf5083822c8491cd6e95 268 Gene3D G3DSA:2.40.128.20 137 266 1.2E-41 T 06-07-2017 IPR012674 Calycin APT55_RS09570 857d8e66b550bf5083822c8491cd6e95 268 Pfam PF12204 Domain of unknown function (DUF3598) 3 264 8.9E-112 T 06-07-2017 IPR022017 Domain of unknown function DUF3598 APT55_RS09570 857d8e66b550bf5083822c8491cd6e95 268 SUPERFAMILY SSF50814 1 132 9.93E-35 T 06-07-2017 IPR011038 Calycin-like APT55_RS09570 857d8e66b550bf5083822c8491cd6e95 268 Gene3D G3DSA:2.40.128.20 1 133 7.1E-40 T 06-07-2017 IPR012674 Calycin APT55_RS09570 857d8e66b550bf5083822c8491cd6e95 268 SUPERFAMILY SSF50814 137 266 3.16E-35 T 06-07-2017 IPR011038 Calycin-like APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 Gene3D G3DSA:1.10.10.60 204 255 6.1E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 SMART SM00342 219 302 3.0E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 Pfam PF12833 Helix-turn-helix domain 225 302 5.3E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 Gene3D G3DSA:1.10.10.60 256 303 1.5E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 SUPERFAMILY SSF46689 255 303 2.96E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30315 3e5916060cc7eff3321e9feb62fb37e4 304 SUPERFAMILY SSF46689 205 253 1.08E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS31500 f7bb05aa4ade6ab0c76fbcc6bbf3d27d 298 Gene3D G3DSA:3.30.20.10 198 241 5.9E-5 T 06-07-2017 APT55_RS31500 f7bb05aa4ade6ab0c76fbcc6bbf3d27d 298 Pfam PF01471 Putative peptidoglycan binding domain 15 67 8.0E-7 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS31500 f7bb05aa4ade6ab0c76fbcc6bbf3d27d 298 SUPERFAMILY SSF53955 105 292 3.66E-33 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS31500 f7bb05aa4ade6ab0c76fbcc6bbf3d27d 298 SUPERFAMILY SSF47090 14 67 2.98E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS31500 f7bb05aa4ade6ab0c76fbcc6bbf3d27d 298 Gene3D G3DSA:1.10.101.10 14 67 6.0E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04850 6bdaaf270ea127de0225a4c213ea23bc 172 PIRSF PIRSF000847 1 170 5.2E-44 T 06-07-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 APT55_RS04850 6bdaaf270ea127de0225a4c213ea23bc 172 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 169 7.0E-51 T 06-07-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 APT55_RS04850 6bdaaf270ea127de0225a4c213ea23bc 172 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT55_RS04850 6bdaaf270ea127de0225a4c213ea23bc 172 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 2.7E-16 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SUPERFAMILY SSF55785 177 247 4.35E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Gene3D G3DSA:3.30.450.20 133 251 4.9E-18 T 06-07-2017 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SUPERFAMILY SSF55785 407 503 4.03E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 178 249 8.2E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 502 1.6E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Gene3D G3DSA:3.30.450.20 252 372 1.6E-8 T 06-07-2017 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Gene3D G3DSA:3.30.450.20 6 110 3.5E-5 T 06-07-2017 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Pfam PF08447 PAS fold 174 238 5.1E-13 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SMART SM00086 329 375 71.0 T 06-07-2017 IPR001610 PAC motif APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SMART SM00086 203 245 9.7E-8 T 06-07-2017 IPR001610 PAC motif APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SMART SM00086 78 121 34.0 T 06-07-2017 IPR001610 PAC motif APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Pfam PF08448 PAS fold 411 507 2.3E-12 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Gene3D G3DSA:3.30.450.20 373 502 3.5E-14 T 06-07-2017 APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SUPERFAMILY SSF55785 22 116 1.39E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SMART SM00091 397 463 0.0035 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SMART SM00091 134 198 29.0 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 SUPERFAMILY SSF55785 242 373 1.11E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Pfam PF13426 PAS domain 270 373 0.0018 T 06-07-2017 IPR000014 PAS domain APT55_RS30620 652a072b42d59c28b2352e1977702bb2 510 Pfam PF13426 PAS domain 22 114 1.1 T 06-07-2017 IPR000014 PAS domain APT55_RS26060 fa779e8c24cec6d507d4f9923e958dc4 199 Pfam PF00814 Glycoprotease family 53 129 6.7E-13 T 06-07-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 APT55_RS26060 fa779e8c24cec6d507d4f9923e958dc4 199 Gene3D G3DSA:3.30.420.40 6 126 1.8E-20 T 06-07-2017 APT55_RS26060 fa779e8c24cec6d507d4f9923e958dc4 199 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 6 190 6.0E-37 T 06-07-2017 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 APT55_RS26060 fa779e8c24cec6d507d4f9923e958dc4 199 SUPERFAMILY SSF53067 5 100 4.4E-19 T 06-07-2017 APT55_RS24260 4f42d2253cc9d032a678edd05ddfc50b 228 SUPERFAMILY SSF53335 114 165 1.33E-7 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24260 4f42d2253cc9d032a678edd05ddfc50b 228 SUPERFAMILY SSF53335 20 72 1.33E-7 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24260 4f42d2253cc9d032a678edd05ddfc50b 228 Gene3D G3DSA:3.40.50.150 31 73 3.3E-5 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24260 4f42d2253cc9d032a678edd05ddfc50b 228 Gene3D G3DSA:3.40.50.150 117 154 3.3E-5 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27850 60b57744f717999a8dba7114286056dc 271 SUPERFAMILY SSF53448 1 208 6.4E-50 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27850 60b57744f717999a8dba7114286056dc 271 Pfam PF00535 Glycosyl transferase family 2 3 131 6.7E-26 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS27850 60b57744f717999a8dba7114286056dc 271 Gene3D G3DSA:3.90.550.10 2 233 1.4E-45 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS01430 eed342496be5df93a1b0ce04874de4a9 140 SUPERFAMILY SSF140663 4 118 1.14E-37 T 06-07-2017 IPR023203 TTHA0068-like domain APT55_RS01430 eed342496be5df93a1b0ce04874de4a9 140 Pfam PF03745 Domain of unknown function (DUF309) 9 67 8.3E-24 T 06-07-2017 IPR005500 Protein of unknown function DUF309 APT55_RS01430 eed342496be5df93a1b0ce04874de4a9 140 Gene3D G3DSA:1.10.3450.10 2 116 4.2E-39 T 06-07-2017 IPR023203 TTHA0068-like domain APT55_RS24085 d45655182038678693d84f5d770de071 287 SUPERFAMILY SSF81799 106 204 2.09E-35 T 06-07-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 Gene3D G3DSA:1.10.150.170 106 207 2.4E-39 T 06-07-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 Pfam PF01795 MraW methylase family 5 282 4.9E-106 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 283 37.014 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 PIRSF PIRSF004486 1 284 5.1E-102 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 283 5.2E-103 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS24085 d45655182038678693d84f5d770de071 287 SUPERFAMILY SSF53335 6 106 1.02E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24085 d45655182038678693d84f5d770de071 287 SUPERFAMILY SSF53335 205 282 1.02E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24085 d45655182038678693d84f5d770de071 287 Gene3D G3DSA:3.40.50.150 7 103 9.0E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24085 d45655182038678693d84f5d770de071 287 Gene3D G3DSA:3.40.50.150 208 282 9.0E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 SUPERFAMILY SSF53901 9 330 1.21E-67 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 Gene3D G3DSA:3.40.47.10 7 163 5.2E-61 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 Gene3D G3DSA:3.40.47.10 164 330 4.3E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 110 187 2.6E-33 T 06-07-2017 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 6 330 69.182 T 06-07-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 8 330 9.9E-113 T 06-07-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT55_RS20645 4f8fe2dc3d4861a07ec1adb780b4528e 332 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 243 330 1.7E-37 T 06-07-2017 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT55_RS07515 4967e6402009f202db3936c0ea779a65 225 TIGRFAM TIGR02117 chp_urease_rgn: conserved hypothetical protein 18 220 1.1E-42 T 06-07-2017 IPR011727 Conserved hypothetical protein CHP02117 APT55_RS07515 4967e6402009f202db3936c0ea779a65 225 Pfam PF09601 Protein of unknown function (DUF2459) 48 215 2.4E-49 T 06-07-2017 IPR011727 Conserved hypothetical protein CHP02117 APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 SUPERFAMILY SSF54427 180 317 2.66E-35 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 Gene3D G3DSA:3.10.450.50 191 319 3.0E-53 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 Pfam PF02136 Nuclear transport factor 2 (NTF2) domain 197 308 5.9E-15 T 06-07-2017 IPR002075 Nuclear transport factor 2 GO:0005622|GO:0006810 APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 SUPERFAMILY SSF81930 3 172 3.4E-70 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 Gene3D G3DSA:1.10.2090.10 19 168 2.7E-68 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS18500 815302f8472b5aeba8056d45cd9b353c 319 Pfam PF09150 Orange carotenoid protein, N-terminal 15 164 8.1E-66 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS28930 c32471abeb3d2d29ec071d89cc1a7608 189 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 5 170 9.2E-43 T 06-07-2017 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 APT55_RS28930 c32471abeb3d2d29ec071d89cc1a7608 189 SUPERFAMILY SSF56399 7 180 1.65E-57 T 06-07-2017 APT55_RS28930 c32471abeb3d2d29ec071d89cc1a7608 189 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 5 178 32.198 T 06-07-2017 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 APT55_RS09285 656d633a09c5a372eb7dac4180b0f172 315 SUPERFAMILY SSF53448 3 247 2.44E-54 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS09285 656d633a09c5a372eb7dac4180b0f172 315 Gene3D G3DSA:3.90.550.10 5 233 2.7E-50 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS09285 656d633a09c5a372eb7dac4180b0f172 315 Pfam PF00535 Glycosyl transferase family 2 8 136 9.5E-30 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 6.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 424 6.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 6.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 383 6.1E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 SMART SM00448 7 120 9.0E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Pfam PF00072 Response regulator receiver domain 9 121 2.5E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Gene3D G3DSA:3.40.50.2300 4 132 2.0E-40 T 06-07-2017 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 SMART SM00387 311 427 4.0E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Gene3D G3DSA:1.10.287.130 164 261 4.7E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Pfam PF00512 His Kinase A (phospho-acceptor) domain 169 265 2.1E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 SUPERFAMILY SSF52172 4 139 1.57E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 SUPERFAMILY SSF47384 163 204 5.89E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 SUPERFAMILY SSF55874 253 427 2.1E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 314 426 5.2E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24445 4d3f037dc6be56e152a02a8b0566f52a 453 Gene3D G3DSA:3.30.565.10 264 428 4.4E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS31300 b17ea9f985f2d70d5197ef07074acb8d 276 Gene3D G3DSA:3.40.50.300 58 229 1.7E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31300 b17ea9f985f2d70d5197ef07074acb8d 276 SUPERFAMILY SSF52540 80 229 7.11E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31300 b17ea9f985f2d70d5197ef07074acb8d 276 PIRSF PIRSF003073 1 252 1.7E-77 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS31300 b17ea9f985f2d70d5197ef07074acb8d 276 Pfam PF01695 IstB-like ATP binding protein 58 228 7.5E-43 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS31300 b17ea9f985f2d70d5197ef07074acb8d 276 SMART SM00382 101 231 4.0E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03190 b17ea9f985f2d70d5197ef07074acb8d 276 Gene3D G3DSA:3.40.50.300 58 229 1.7E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03190 b17ea9f985f2d70d5197ef07074acb8d 276 SUPERFAMILY SSF52540 80 229 7.11E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03190 b17ea9f985f2d70d5197ef07074acb8d 276 PIRSF PIRSF003073 1 252 1.7E-77 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS03190 b17ea9f985f2d70d5197ef07074acb8d 276 Pfam PF01695 IstB-like ATP binding protein 58 228 7.5E-43 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS03190 b17ea9f985f2d70d5197ef07074acb8d 276 SMART SM00382 101 231 4.0E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 7.9E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 7.9E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 7.9E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 Pfam PF00106 short chain dehydrogenase 3 181 6.5E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 Gene3D G3DSA:3.40.50.720 2 258 1.9E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 1.1E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 1.1E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 1.1E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 1.1E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22370 c4a1dfe62fcfcee56070094df6486c33 266 SUPERFAMILY SSF51735 2 237 1.71E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26235 d832f5d40ecb5d07236343ea28f4cf2b 106 Gene3D G3DSA:3.30.70.330 2 96 8.3E-32 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS26235 d832f5d40ecb5d07236343ea28f4cf2b 106 SMART SM00360 2 75 4.4E-26 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS26235 d832f5d40ecb5d07236343ea28f4cf2b 106 SUPERFAMILY SSF54928 2 104 3.76E-34 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS26235 d832f5d40ecb5d07236343ea28f4cf2b 106 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 3.2E-21 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS16755 3e84b3b9bc02b2f35587348bf1691486 325 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 33 321 2.0E-122 T 06-07-2017 IPR006372 Bacteriochlorophyll/chlorophyll synthetase APT55_RS16755 3e84b3b9bc02b2f35587348bf1691486 325 Pfam PF01040 UbiA prenyltransferase family 44 284 1.0E-34 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 APT55_RS16755 3e84b3b9bc02b2f35587348bf1691486 325 TIGRFAM TIGR02056 ChlG: chlorophyll synthase ChlG 17 322 4.0E-173 T 06-07-2017 IPR011799 Chlorophyll synthase, ChlG GO:0015995|GO:0016021|GO:0046408 KEGG: 00860+2.5.1.62|MetaCyc: PWY-5068|MetaCyc: PWY-5086 APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 SUPERFAMILY SSF141571 4 166 4.19E-41 T 06-07-2017 APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF13599 Pentapeptide repeats (9 copies) 73 164 1.5E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF13599 Pentapeptide repeats (9 copies) 406 480 4.8E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 SUPERFAMILY SSF141571 249 378 8.37E-31 T 06-07-2017 APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 SUPERFAMILY SSF141571 339 486 9.42E-31 T 06-07-2017 APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 SUPERFAMILY SSF141571 139 285 1.18E-35 T 06-07-2017 APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF00805 Pentapeptide repeats (8 copies) 14 51 1.7E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF00805 Pentapeptide repeats (8 copies) 243 282 3.5E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF00805 Pentapeptide repeats (8 copies) 318 357 3.8E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF00805 Pentapeptide repeats (8 copies) 363 401 4.4E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05405 adad6b343be9a97c055c2c949a235314 664 Pfam PF00805 Pentapeptide repeats (8 copies) 178 215 6.5E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS00730 dada9c6d24099e7ee14da320bf3a09a4 92 Pfam PF13455 Meiotically up-regulated gene 113 13 74 7.3E-7 T 06-07-2017 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 6.5E-218 T 06-07-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 Gene3D G3DSA:1.10.1040.10 180 434 7.3E-110 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 254 266 - T 06-07-2017 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 250 277 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 3 26 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 6.7E-81 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 467 1.3E-127 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 1.6E-52 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 SUPERFAMILY SSF51735 4 175 4.78E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 PIRSF PIRSF000109 1 476 6.6E-228 T 06-07-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 Gene3D G3DSA:3.40.50.720 3 179 1.5E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 SMART SM01350 178 468 1.2E-206 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 Gene3D G3DSA:1.20.5.320 436 474 1.0E-20 T 06-07-2017 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APT55_RS24545 836c8619a62155b5eb9843d5400b30d0 505 SUPERFAMILY SSF48179 176 469 1.16E-122 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 SUPERFAMILY SSF52540 400 566 6.07E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 Gene3D G3DSA:3.40.50.300 394 567 4.3E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 474 492 1.7E-10 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 402 422 1.7E-10 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 423 441 1.7E-10 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 Pfam PF01926 50S ribosome-binding GTPase 402 525 6.4E-20 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 Hamap MF_00900 GTPase HflX [hflX]. 229 572 42.291 T 06-07-2017 IPR016496 GTPase HflX GO:0005525 APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 Pfam PF13167 GTP-binding GTPase N-terminal 227 314 5.2E-31 T 06-07-2017 IPR025121 GTPase HflX, N-terminal APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 Pfam PF16360 GTP-binding GTPase Middle Region 316 394 2.1E-27 T 06-07-2017 IPR032305 GTP-binding protein, middle domain APT55_RS13255 215c8339bc4895d758cb13443f3b3cf0 572 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 210 564 2.2E-141 T 06-07-2017 IPR016496 GTPase HflX GO:0005525 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 SMART SM00342 242 325 7.5E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 Gene3D G3DSA:1.10.10.60 281 327 9.9E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 Pfam PF12833 Helix-turn-helix domain 248 326 3.3E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 Gene3D G3DSA:1.10.10.60 224 280 2.7E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 SUPERFAMILY SSF46689 278 329 7.17E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 SUPERFAMILY SSF46689 225 276 1.52E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 309 1.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS25105 ef412fcc3ab3fa9acc20f19a2c0d79f8 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 309 325 1.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 Pfam PF00682 HMGL-like 3 261 6.2E-77 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 Gene3D G3DSA:3.20.20.70 2 333 8.9E-109 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 190 203 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 SUPERFAMILY SSF51569 1 279 6.96E-82 T 06-07-2017 APT55_RS11600 bcaf2717dea0143585df92a007df1a21 369 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 4 366 6.7E-160 T 06-07-2017 IPR013477 Homocitrate synthase NifV-type GO:0004410|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 7 1056 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:3.30.70.1430 43 143 2.6E-30 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82693 286 347 3.14E-21 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82693 158 193 3.14E-21 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 380 401 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 567 584 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 487 510 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 408 432 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 634 648 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 PRINTS PR00702 Acriflavin resistance protein family signature 353 376 1.5E-87 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82866 832 1053 7.59E-49 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82714 194 284 1.96E-23 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:3.30.70.1430 582 691 5.4E-28 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82693 580 691 5.93E-27 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:1.10.3850.10 301 516 3.1E-56 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:1.10.3850.10 838 1051 7.4E-61 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82693 43 138 2.72E-25 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82866 313 515 2.09E-46 T 06-07-2017 APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:3.30.2090.10 193 287 2.6E-29 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Gene3D G3DSA:3.30.2090.10 746 835 1.8E-24 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 SUPERFAMILY SSF82714 747 832 5.36E-22 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS26855 6741d26a4063fb948ce56c17481d7738 1089 Pfam PF00873 AcrB/AcrD/AcrF family 7 1052 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS30750 40c3112cf67dcf94f5e5cc9c75b68544 435 Gene3D G3DSA:1.20.1250.20 2 186 4.3E-14 T 06-07-2017 APT55_RS30750 40c3112cf67dcf94f5e5cc9c75b68544 435 Pfam PF07690 Major Facilitator Superfamily 8 354 1.3E-20 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS30750 40c3112cf67dcf94f5e5cc9c75b68544 435 SUPERFAMILY SSF103473 2 414 4.32E-33 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS11945 fbfc5938a9a8b6ec1a198aa85ab58d89 119 Pfam PF08848 Domain of unknown function (DUF1818) 6 106 5.0E-44 T 06-07-2017 IPR014947 Protein of unknown function DUF1818 APT55_RS11945 fbfc5938a9a8b6ec1a198aa85ab58d89 119 SUPERFAMILY SSF54447 1 106 3.18E-41 T 06-07-2017 IPR009044 ssDNA-binding transcriptional regulator GO:0003677|GO:0006355 APT55_RS11945 fbfc5938a9a8b6ec1a198aa85ab58d89 119 Gene3D G3DSA:2.30.31.10 2 106 1.3E-43 T 06-07-2017 IPR009044 ssDNA-binding transcriptional regulator GO:0003677|GO:0006355 APT55_RS13550 7d1801fa86f1abd0e7094137dbea722d 741 Gene3D G3DSA:2.120.10.30 564 591 3.9E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS13550 7d1801fa86f1abd0e7094137dbea722d 741 Gene3D G3DSA:2.120.10.30 718 726 3.9E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS13550 7d1801fa86f1abd0e7094137dbea722d 741 Pfam PF05787 Bacterial protein of unknown function (DUF839) 70 669 2.3E-111 T 06-07-2017 IPR008557 Protein of unknown function DUF839 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Gene3D G3DSA:1.25.60.10 15 121 3.2E-23 T 06-07-2017 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SUPERFAMILY SSF54631 128 260 6.82E-30 T 06-07-2017 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Pfam PF01769 Divalent cation transporter 313 437 2.2E-22 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Gene3D G3DSA:3.10.580.10 122 255 3.0E-21 T 06-07-2017 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Gene3D G3DSA:1.10.357.20 275 443 2.7E-40 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Pfam PF03448 MgtE intracellular N domain 28 126 1.8E-23 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SMART SM00924 26 129 1.0E-33 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 TIGRFAM TIGR00400 mgtE: magnesium transporter 12 442 5.7E-112 T 06-07-2017 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Pfam PF00571 CBS domain 194 247 7.0E-8 T 06-07-2017 IPR000644 CBS domain APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 Pfam PF00571 CBS domain 129 188 4.0E-5 T 06-07-2017 IPR000644 CBS domain APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SUPERFAMILY SSF161093 274 442 1.7E-37 T 06-07-2017 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SUPERFAMILY SSF158791 15 126 4.19E-25 T 06-07-2017 APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SMART SM00116 200 248 2.6E-9 T 06-07-2017 IPR000644 CBS domain APT55_RS18225 b263e41cc8532f2b0ee88899d645a1f6 450 SMART SM00116 136 189 3.7 T 06-07-2017 IPR000644 CBS domain APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Gene3D G3DSA:3.40.120.10 31 174 1.9E-44 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 119 133 5.8E-9 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 261 276 5.8E-9 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Gene3D G3DSA:3.40.120.10 203 277 1.2E-21 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 28 476 41.942 T 06-07-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 285 398 1.5E-30 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 SUPERFAMILY SSF53738 181 283 8.63E-25 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Gene3D G3DSA:3.30.310.50 397 476 8.2E-17 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 182 281 7.4E-18 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 31 160 4.5E-42 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 SUPERFAMILY SSF53738 285 392 3.37E-31 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 32 474 2.0E-171 T 06-07-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 404 471 5.5E-14 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 120 129 - T 06-07-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 SUPERFAMILY SSF55957 389 477 3.79E-21 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 Gene3D G3DSA:3.40.120.10 278 393 1.7E-34 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS01625 117bec93ed8f13563841417f6bf15822 478 SUPERFAMILY SSF53738 28 207 6.28E-45 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 Gene3D G3DSA:3.40.50.170 1 204 2.5E-68 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 Pfam PF02911 Formyl transferase, C-terminal domain 204 312 4.0E-22 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 06-07-2017 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 SUPERFAMILY SSF53328 1 206 3.14E-63 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 SUPERFAMILY SSF50486 204 320 3.53E-23 T 06-07-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 315 35.25 T 06-07-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 Gene3D G3DSA:3.10.25.10 207 320 2.4E-24 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 Pfam PF00551 Formyl transferase 1 181 3.6E-39 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS19280 b70a4790f7aef6f3647007ad2ddf581e 320 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 318 1.0E-84 T 06-07-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 95 6.3E-7 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 SMART SM00829 16 332 8.5E-14 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 Pfam PF00107 Zinc-binding dehydrogenase 157 288 7.3E-30 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 SUPERFAMILY SSF51735 124 298 1.04E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 Gene3D G3DSA:3.90.180.10 20 97 7.3E-14 T 06-07-2017 IPR011032 GroES-like APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 Gene3D G3DSA:3.40.50.720 129 300 1.7E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS19980 58578bc8b8cfc058a3bf06a42ac84e15 334 SUPERFAMILY SSF50129 21 159 3.8E-26 T 06-07-2017 IPR011032 GroES-like APT55_RS00525 746bfd5069a7d8226f3b280872bdad23 366 Gene3D G3DSA:3.40.50.2000 157 336 1.4E-27 T 06-07-2017 APT55_RS00525 746bfd5069a7d8226f3b280872bdad23 366 SUPERFAMILY SSF53756 5 365 4.49E-64 T 06-07-2017 APT55_RS00525 746bfd5069a7d8226f3b280872bdad23 366 Pfam PF00534 Glycosyl transferases group 1 193 339 1.8E-30 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 SUPERFAMILY SSF111369 201 319 7.85E-10 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 273 294 2.7E-6 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 305 329 2.7E-6 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 83 103 2.7E-6 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 Gene3D G3DSA:2.40.50.100 82 105 1.1E-8 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 Gene3D G3DSA:2.40.50.100 260 284 1.1E-8 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 Pfam PF13437 HlyD family secretion protein 263 367 3.2E-7 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 Pfam PF13533 Biotin-lipoyl like 79 121 1.7E-5 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 SUPERFAMILY SSF111369 82 165 5.49E-5 T 06-07-2017 APT55_RS10335 6d4e7fb648841888956d348b550219d6 383 TIGRFAM TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family 52 381 5.7E-97 T 06-07-2017 IPR014315 ABC transporter, membrane fusion protein, DevB type APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 205 217 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 205 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 189 1.3E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 SUPERFAMILY SSF52172 3 140 3.13E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 Pfam PF00072 Response regulator receiver domain 6 122 1.6E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 Gene3D G3DSA:1.10.10.10 127 235 3.8E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 ProSitePatterns PS00622 LuxR-type HTH domain signature. 189 216 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 SMART SM00448 4 122 1.9E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 SMART SM00421 172 229 1.3E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 SUPERFAMILY SSF46894 168 235 7.48E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 Gene3D G3DSA:3.40.50.2300 3 126 2.3E-31 T 06-07-2017 APT55_RS20510 7c478a74d6ca083c8923d36101d7715c 236 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 228 5.5E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 116 1.4E-41 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 Pfam PF02033 Ribosome-binding factor A 6 111 1.4E-31 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 98 9.0E-41 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 Gene3D G3DSA:3.30.300.20 4 119 1.2E-40 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 SUPERFAMILY SSF89919 2 114 2.09E-35 T 06-07-2017 IPR023799 Ribosome-binding factor A domain APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 2 118 22.63 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 APT55_RS09840 ab55d187b6da01004fb642f96d1a6c3c 123 ProSitePatterns PS01319 Ribosome-binding factor A signature. 77 98 - T 06-07-2017 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 APT55_RS27725 5009040f31e26f161bc1194fdb2afc8e 591 SUPERFAMILY SSF69318 155 298 4.19E-7 T 06-07-2017 APT55_RS18695 184db1bb6f40ce6ea211bad1cf03d05f 294 Pfam PF11927 Protein of unknown function (DUF3445) 31 253 9.1E-65 T 06-07-2017 IPR021848 Protein of unknown function DUF3445 APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 153 1.5E-37 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 06-07-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 Pfam PF00994 Probable molybdopterin binding domain 17 156 2.8E-35 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 SMART SM00852 17 158 8.2E-31 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 Gene3D G3DSA:3.40.980.10 14 165 3.4E-47 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 SUPERFAMILY SSF53218 14 163 5.63E-42 T 06-07-2017 IPR001453 MoaB/Mog domain APT55_RS17185 1aca45c11fc4113c98bd92bee8a7d505 167 PIRSF PIRSF006443 1 166 2.0E-63 T 06-07-2017 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 20 111 1.1E-19 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 Gene3D G3DSA:2.60.40.420 192 326 1.8E-40 T 06-07-2017 IPR008972 Cupredoxin APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 219 286 5.7E-15 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 PRINTS PR01166 Cytochrome c oxidase subunit II signature 97 117 4.1E-11 T 06-07-2017 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 PRINTS PR01166 Cytochrome c oxidase subunit II signature 235 255 4.1E-11 T 06-07-2017 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 PRINTS PR01166 Cytochrome c oxidase subunit II signature 273 290 4.1E-11 T 06-07-2017 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 PRINTS PR01166 Cytochrome c oxidase subunit II signature 85 97 4.1E-11 T 06-07-2017 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 SUPERFAMILY SSF49503 191 311 8.13E-43 T 06-07-2017 IPR008972 Cupredoxin APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 Gene3D G3DSA:1.10.287.90 30 113 8.7E-16 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 236 284 - T 06-07-2017 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05880 e6d30cf0878cf251dabd711569e4b78a 357 SUPERFAMILY SSF81464 14 112 2.29E-19 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS08715 12186a095817ed371cb4bd180356318a 344 Gene3D G3DSA:3.40.50.10140 11 132 1.1E-14 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08715 12186a095817ed371cb4bd180356318a 344 Pfam PF13676 TIR domain 11 121 1.3E-23 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08715 12186a095817ed371cb4bd180356318a 344 SMART SM00255 8 149 1.2E-11 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08715 12186a095817ed371cb4bd180356318a 344 SUPERFAMILY SSF52200 9 150 2.09E-25 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS30390 a35fc1b1cd705442aa3f1ea8194354e3 785 Gene3D G3DSA:3.40.50.300 325 389 2.3E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30390 a35fc1b1cd705442aa3f1ea8194354e3 785 SUPERFAMILY SSF52309 20 92 7.32E-6 T 06-07-2017 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 SUPERFAMILY SSF47203 237 369 3.7E-12 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Gene3D G3DSA:1.10.540.10 8 94 4.6E-17 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 242 352 1.7E-8 T 06-07-2017 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Gene3D G3DSA:2.40.110.10 123 209 2.1E-26 T 06-07-2017 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 91 1.2E-8 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Gene3D G3DSA:1.20.140.10 210 369 1.7E-19 T 06-07-2017 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 SUPERFAMILY SSF56645 11 216 3.4E-38 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 PIRSF PIRSF016578 1 375 1.2E-36 T 06-07-2017 APT55_RS18450 687054e3872f0d40257958012e78ad35 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 209 3.3E-10 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 APT55_RS25690 d0bd132f81d866362a8ea95d68b02bce 240 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 240 42.226 T 06-07-2017 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS25690 d0bd132f81d866362a8ea95d68b02bce 240 Pfam PF02654 Cobalamin-5-phosphate synthase 12 235 9.5E-52 T 06-07-2017 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS25690 d0bd132f81d866362a8ea95d68b02bce 240 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 9 236 1.2E-45 T 06-07-2017 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 Pfam PF13282 Domain of unknown function (DUF4070) 359 505 5.4E-43 T 06-07-2017 IPR025274 Domain of unknown function DUF4070 APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 SMART SM00729 167 380 5.6E-14 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 Pfam PF02310 B12 binding domain 28 129 4.6E-13 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 SUPERFAMILY SSF102114 164 364 5.23E-26 T 06-07-2017 APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 Gene3D G3DSA:3.80.30.20 168 370 2.4E-30 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS11530 c248a35d60d7ded0ecec3798e40abfe6 526 Pfam PF04055 Radical SAM superfamily 171 330 7.3E-11 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 SMART SM00846 4 155 2.1E-90 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 329 2.9E-134 T 06-07-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PIRSF PIRSF000149 2 338 1.5E-134 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 317 3.2E-72 T 06-07-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 Gene3D G3DSA:3.30.360.10 164 319 1.8E-84 T 06-07-2017 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 233 250 1.2E-47 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.2E-47 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.2E-47 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 273 288 1.2E-47 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.2E-47 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 SUPERFAMILY SSF51735 4 171 9.65E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07915 7ca842efe9e582495e524650624de69f 342 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 155 2.9E-58 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 SUPERFAMILY SSF55347 154 317 3.12E-79 T 06-07-2017 APT55_RS07915 7ca842efe9e582495e524650624de69f 342 Gene3D G3DSA:3.40.50.720 1 163 5.9E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07915 7ca842efe9e582495e524650624de69f 342 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 06-07-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 SUPERFAMILY SSF51713 7 365 7.46E-149 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 Gene3D G3DSA:3.20.20.105 3 365 3.8E-157 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 365 5.3E-161 T 06-07-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 360 4.4E-85 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 362 52.304 T 06-07-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS11360 3133b4a454bb4ec80a1b6be3806db7cb 368 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 364 2.3E-153 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT55_RS05255 a603bc2be051e17acda9d9a0c63855e7 103 SUPERFAMILY SSF53098 3 51 5.61E-6 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS16490 3a20d32145235ff5632513e2301887ec 140 Pfam PF02531 PsaD 6 138 3.7E-70 T 06-07-2017 IPR003685 Photosystem I PsaD GO:0009522|GO:0009538|GO:0015979 APT55_RS16490 3a20d32145235ff5632513e2301887ec 140 Gene3D G3DSA:3.30.1470.10 4 139 1.1E-68 T 06-07-2017 IPR003685 Photosystem I PsaD GO:0009522|GO:0009538|GO:0015979 APT55_RS16490 3a20d32145235ff5632513e2301887ec 140 SUPERFAMILY SSF64234 4 139 2.75E-65 T 06-07-2017 IPR003685 Photosystem I PsaD GO:0009522|GO:0009538|GO:0015979 APT55_RS05455 70d5c046765cb99ad401a959e493bcb2 262 Pfam PF11103 Protein of unknown function (DUF2887) 3 204 1.3E-69 T 06-07-2017 IPR022573 Protein of unknown function DUF2887 APT55_RS05455 70d5c046765cb99ad401a959e493bcb2 262 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 2 258 2.1E-16 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS02405 0a19b7e3d0389642dcf012c120a3ef69 148 Gene3D G3DSA:2.60.120.10 34 126 9.9E-24 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS02405 0a19b7e3d0389642dcf012c120a3ef69 148 Pfam PF07883 Cupin domain 54 121 4.2E-11 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS02405 0a19b7e3d0389642dcf012c120a3ef69 148 SUPERFAMILY SSF51182 47 137 7.6E-17 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 Gene3D G3DSA:2.40.30.10 273 349 2.1E-27 T 06-07-2017 APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 347 1.9E-124 T 06-07-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 Pfam PF03054 tRNA methyl transferase 3 347 2.7E-119 T 06-07-2017 APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 Gene3D G3DSA:3.40.50.620 2 206 5.6E-73 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 Gene3D G3DSA:2.30.30.280 208 268 1.7E-20 T 06-07-2017 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 2 348 38.875 T 06-07-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 APT55_RS25885 5ec808239e9f97c65be9a9390f390a19 350 SUPERFAMILY SSF52402 1 239 1.72E-48 T 06-07-2017 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 Gene3D G3DSA:3.90.1150.10 316 412 3.1E-39 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 Gene3D G3DSA:3.90.1150.10 16 64 3.1E-39 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 SUPERFAMILY SSF53383 21 411 7.75E-129 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS23860 62015be966c617fe22c262b9346383c4 414 Pfam PF00202 Aminotransferase class-III 27 410 1.8E-118 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 Gene3D G3DSA:3.40.640.10 65 315 3.4E-86 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 18 411 47.02 T 06-07-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 270 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 PIRSF PIRSF000521 7 413 1.9E-50 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS23860 62015be966c617fe22c262b9346383c4 414 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 20 410 1.2E-159 T 06-07-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 SUPERFAMILY SSF55060 163 279 2.88E-32 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PRINTS PR00958 Homoserine kinase signature 93 108 3.0E-39 T 06-07-2017 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PRINTS PR00958 Homoserine kinase signature 127 140 3.0E-39 T 06-07-2017 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PRINTS PR00958 Homoserine kinase signature 10 25 3.0E-39 T 06-07-2017 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PRINTS PR00958 Homoserine kinase signature 167 184 3.0E-39 T 06-07-2017 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PRINTS PR00958 Homoserine kinase signature 246 261 3.0E-39 T 06-07-2017 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 86 97 - T 06-07-2017 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 PIRSF PIRSF000676 1 302 2.4E-91 T 06-07-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 Pfam PF00288 GHMP kinases N terminal domain 80 140 3.1E-8 T 06-07-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 Hamap MF_00384 Homoserine kinase [thrB]. 3 299 31.791 T 06-07-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 Gene3D G3DSA:3.30.70.890 159 290 1.4E-42 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 Gene3D G3DSA:3.30.230.10 2 146 1.4E-50 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 SUPERFAMILY SSF54211 1 144 9.87E-30 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 Pfam PF08544 GHMP kinases C terminal 206 271 9.5E-8 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS03315 4099a17c647362341efd1f15574cb0ff 303 TIGRFAM TIGR00191 thrB: homoserine kinase 4 300 5.9E-88 T 06-07-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APT55_RS10525 28f112d15b441bc5318ddcd72266cb2c 70 Pfam PF10716 NADH dehydrogenase transmembrane subunit 3 67 1.4E-29 T 06-07-2017 IPR019654 NAD(P)H-quinone oxidoreductase subunit L GO:0016655|GO:0055114 APT55_RS10525 28f112d15b441bc5318ddcd72266cb2c 70 Hamap MF_01355 NAD(P)H-quinone oxidoreductase subunit L [ndhL]. 2 68 18.123 T 06-07-2017 IPR019654 NAD(P)H-quinone oxidoreductase subunit L GO:0016655|GO:0055114 APT55_RS05585 efeed1152610a7e1a0b8247b74881104 132 Pfam PF01850 PIN domain 5 114 4.8E-6 T 06-07-2017 IPR002716 PIN domain APT55_RS05585 efeed1152610a7e1a0b8247b74881104 132 SUPERFAMILY SSF88723 4 114 3.92E-9 T 06-07-2017 IPR029060 PIN domain-like APT55_RS00640 3b86405ae83cc456f422ca4eb550e718 139 Gene3D G3DSA:1.10.10.10 3 40 3.4E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00640 3b86405ae83cc456f422ca4eb550e718 139 Pfam PF13384 Homeodomain-like domain 12 47 2.0E-6 T 06-07-2017 APT55_RS22170 5e637b67f4c0ccb9034a89f9ab024bdd 238 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 1 50 5.0E-15 T 06-07-2017 IPR027805 Transposase, Helix-turn-helix domain APT55_RS22170 5e637b67f4c0ccb9034a89f9ab024bdd 238 Pfam PF13359 DDE superfamily endonuclease 78 227 1.0E-26 T 06-07-2017 IPR027806 Harbinger transposase-derived nuclease domain APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 Gene3D G3DSA:1.10.10.10 4 75 2.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 SMART SM00345 16 74 2.0E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 SUPERFAMILY SSF46785 8 78 9.97E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 6.9E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 SUPERFAMILY SSF48008 80 218 3.14E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 SMART SM00895 84 212 4.0E-15 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 Gene3D G3DSA:1.20.120.530 77 223 1.1E-27 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS22145 0f896a74f32a61abb7387e59c04a85a8 234 Pfam PF07729 FCD domain 84 210 1.3E-20 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS04025 3056e29d805126ea89cd8e97b75aabc5 127 Gene3D G3DSA:3.30.1330.40 1 125 5.5E-31 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS04025 3056e29d805126ea89cd8e97b75aabc5 127 Pfam PF01042 Endoribonuclease L-PSP 14 123 1.1E-20 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family APT55_RS04025 3056e29d805126ea89cd8e97b75aabc5 127 SUPERFAMILY SSF55298 1 124 1.1E-27 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 Gene3D G3DSA:2.130.10.10 125 398 2.7E-30 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 SMART SM00320 321 356 360.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 SMART SM00320 278 318 9.8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 SMART SM00320 359 398 0.035 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 SMART SM00320 173 222 260.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS02185 a3adf0a9bcdd4686cee22b706a80e644 402 SUPERFAMILY SSF50998 121 397 8.37E-33 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS27150 1fdaf0c73bf101b2ded7eccebb94d09f 145 Gene3D G3DSA:3.40.50.1010 3 135 1.2E-7 T 06-07-2017 IPR029060 PIN domain-like APT55_RS27150 1fdaf0c73bf101b2ded7eccebb94d09f 145 SUPERFAMILY SSF88723 3 137 2.27E-19 T 06-07-2017 IPR029060 PIN domain-like APT55_RS27150 1fdaf0c73bf101b2ded7eccebb94d09f 145 Pfam PF01850 PIN domain 4 134 8.6E-9 T 06-07-2017 IPR002716 PIN domain APT55_RS27150 1fdaf0c73bf101b2ded7eccebb94d09f 145 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 140 10.336 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 TIGRFAM TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein 39 337 1.5E-127 T 06-07-2017 IPR026351 Radical SAM/Cys-rich domain protein APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 SUPERFAMILY SSF102114 48 334 3.01E-34 T 06-07-2017 APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 Pfam PF13353 4Fe-4S single cluster domain 55 114 1.3E-4 T 06-07-2017 APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 Pfam PF12345 Protein of unknown function (DUF3641) 205 336 1.2E-51 T 06-07-2017 IPR024521 Domain of unknown function DUF3641 APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 Gene3D G3DSA:3.20.20.70 40 335 3.4E-23 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS07375 c6fd3d6fce3f135ec9a0bb81162592d0 338 Pfam PF04055 Radical SAM superfamily 49 186 6.0E-10 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Pfam PF00270 DEAD/DEAH box helicase 3 150 3.0E-17 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SUPERFAMILY SSF52540 6 152 1.59E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SUPERFAMILY SSF52540 210 262 1.59E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SUPERFAMILY SSF52540 297 389 1.59E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Gene3D G3DSA:3.40.50.300 4 175 4.8E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SMART SM01142 695 865 1.3E-56 T 06-07-2017 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Pfam PF00271 Helicase conserved C-terminal domain 304 377 5.1E-6 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Gene3D G3DSA:3.40.50.300 300 385 4.3E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Gene3D G3DSA:3.40.50.300 229 265 4.3E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SMART SM00487 1 179 6.8E-25 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 Pfam PF08148 DSHCT (NUC185) domain 699 862 2.2E-40 T 06-07-2017 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal APT55_RS29225 d3f524e66bea89339b04eb34cff7e519 866 SMART SM00490 276 377 4.8E-12 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 SMART SM00257 37 81 9.2E-9 T 06-07-2017 IPR018392 LysM domain APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 SUPERFAMILY SSF51261 72 280 3.61E-43 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 Pfam PF01476 LysM domain 38 81 1.4E-7 T 06-07-2017 IPR018392 LysM domain APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 Gene3D G3DSA:3.10.350.10 37 81 4.9E-11 T 06-07-2017 IPR018392 LysM domain APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 Gene3D G3DSA:2.70.70.10 150 281 2.6E-37 T 06-07-2017 APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 SUPERFAMILY SSF54106 37 81 6.67E-8 T 06-07-2017 IPR018392 LysM domain APT55_RS15540 b32af9b13776307492eda8aafff7902b 282 Pfam PF01551 Peptidase family M23 176 267 2.3E-30 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS26260 808cb22d2d35bf5f74c39312acaf7876 126 Gene3D G3DSA:3.30.750.24 15 121 1.4E-32 T 06-07-2017 IPR002645 STAS domain APT55_RS26260 808cb22d2d35bf5f74c39312acaf7876 126 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 19 115 1.1E-20 T 06-07-2017 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT55_RS26260 808cb22d2d35bf5f74c39312acaf7876 126 Pfam PF01740 STAS domain 19 116 5.7E-15 T 06-07-2017 IPR002645 STAS domain APT55_RS26260 808cb22d2d35bf5f74c39312acaf7876 126 SUPERFAMILY SSF52091 19 117 3.53E-26 T 06-07-2017 IPR002645 STAS domain APT55_RS29160 b23fa8613dac918c88273cba107401c5 340 Pfam PF00795 Carbon-nitrogen hydrolase 18 264 6.0E-37 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS29160 b23fa8613dac918c88273cba107401c5 340 Gene3D G3DSA:3.60.110.10 27 269 6.2E-51 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS29160 b23fa8613dac918c88273cba107401c5 340 SUPERFAMILY SSF56317 16 275 5.89E-57 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS29160 b23fa8613dac918c88273cba107401c5 340 Hamap MF_01243 Formamidase [amiF]. 1 329 69.713 T 06-07-2017 IPR022843 Formamidase GO:0004328|GO:0006807 KEGG: 00460+3.5.1.49|KEGG: 00630+3.5.1.49|KEGG: 00910+3.5.1.49|MetaCyc: PWY-7142 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 SUPERFAMILY SSF51569 281 353 5.13E-66 T 06-07-2017 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 SUPERFAMILY SSF51569 64 247 5.13E-66 T 06-07-2017 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 SMART SM01133 74 336 1.2E-39 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 Gene3D G3DSA:3.20.20.70 61 247 5.4E-101 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 Gene3D G3DSA:3.20.20.70 281 354 5.4E-101 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS15055 fddad6282f00feab0fdb9c138b22d768 360 Pfam PF01791 DeoC/LacD family aldolase 74 336 4.0E-72 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 APT55_RS16160 8efa0fe026edcc42de555f4f12a968a8 289 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 121 6.0E-24 T 06-07-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 APT55_RS16160 8efa0fe026edcc42de555f4f12a968a8 289 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 7 289 3.5E-51 T 06-07-2017 IPR005218 Diacylglycerol/lipid kinase APT55_RS16160 8efa0fe026edcc42de555f4f12a968a8 289 Gene3D G3DSA:3.40.50.10330 47 94 9.0E-5 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS16160 8efa0fe026edcc42de555f4f12a968a8 289 SMART SM00046 4 126 1.3E-6 T 06-07-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 APT55_RS16160 8efa0fe026edcc42de555f4f12a968a8 289 SUPERFAMILY SSF111331 3 289 1.96E-74 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00073 1095 1192 7.7E-6 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:1.10.287.130 549 607 5.7E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF01590 GAF domain 373 520 1.4E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF01590 GAF domain 26 153 7.4E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF00512 His Kinase A (phospho-acceptor) domain 556 621 6.3E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF01627 Hpt domain 1104 1186 1.3E-10 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.30.450.40 359 523 4.2E-33 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00387 668 784 5.0E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF52172 951 1069 1.35E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.40.50.2300 946 1058 5.6E-43 T 06-07-2017 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF55781 26 170 8.51E-23 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 737 7.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 PRINTS PR00344 Bacterial sensor protein C-terminal signature 768 781 7.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 PRINTS PR00344 Bacterial sensor protein C-terminal signature 744 762 7.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 PRINTS PR00344 Bacterial sensor protein C-terminal signature 709 723 7.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF00072 Response regulator receiver domain 811 924 1.7E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF00072 Response regulator receiver domain 955 1066 5.3E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.30.450.40 24 172 2.9E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.30.450.40 181 357 3.3E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.30.565.10 608 786 1.4E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF52172 804 930 7.4E-27 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 668 782 2.9E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:3.40.50.2300 806 932 1.7E-28 T 06-07-2017 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF47226 1049 1183 1.11E-23 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF55781 352 530 6.76E-53 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00388 556 621 3.3E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Gene3D G3DSA:1.20.120.160 1059 1188 3.8E-19 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00065 197 352 2.8E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00065 373 530 7.7E-34 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00065 24 167 2.2E-5 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 Pfam PF13185 GAF domain 197 343 1.9E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF55781 197 355 1.5E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF47384 542 622 6.28E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SUPERFAMILY SSF55874 610 780 1.07E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00448 808 926 2.3E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10245 34d67ebecf8cd9e68f97b4156f38451b 1192 SMART SM00448 953 1066 4.2E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12955 9ff6715b4bac082ee4994daffa0c1f5a 181 SUPERFAMILY SSF88697 22 170 4.89E-56 T 06-07-2017 IPR015947 PUA-like domain APT55_RS12955 9ff6715b4bac082ee4994daffa0c1f5a 181 Pfam PF01878 EVE domain 24 168 9.9E-48 T 06-07-2017 IPR002740 EVE domain APT55_RS12955 9ff6715b4bac082ee4994daffa0c1f5a 181 Gene3D G3DSA:3.10.590.10 23 169 4.4E-21 T 06-07-2017 IPR002740 EVE domain APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 Pfam PF00805 Pentapeptide repeats (8 copies) 51 90 8.5E-13 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 SUPERFAMILY SSF48452 138 223 3.53E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 SMART SM00028 175 208 62.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 SMART SM00028 141 174 0.029 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 Gene3D G3DSA:1.25.40.10 139 220 4.7E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20900 5215b06dfaae12613678bf51cf0b327f 255 SUPERFAMILY SSF141571 37 134 1.09E-26 T 06-07-2017 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:3.40.50.2300 491 617 5.4E-31 T 06-07-2017 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:1.10.10.10 133 230 3.2E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 228 5.5E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SUPERFAMILY SSF55073 624 774 2.75E-38 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF00072 Response regulator receiver domain 494 605 1.5E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF00072 Response regulator receiver domain 369 480 5.4E-6 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF00072 Response regulator receiver domain 3 121 6.3E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SUPERFAMILY SSF52172 368 488 6.97E-12 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF01627 Hpt domain 256 337 3.0E-13 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SMART SM00448 367 480 0.0029 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SMART SM00448 492 605 2.5E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SMART SM00448 1 120 4.1E-44 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:1.20.120.160 247 342 2.3E-7 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Pfam PF00990 Diguanylate cyclase, GGDEF domain 621 774 1.4E-37 T 06-07-2017 IPR000160 GGDEF domain APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SUPERFAMILY SSF52172 490 619 1.2E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SMART SM00862 153 228 1.3E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:3.40.50.2300 1 129 2.1E-38 T 06-07-2017 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SUPERFAMILY SSF52172 1 178 3.7E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 621 777 2.8E-39 T 06-07-2017 IPR000160 GGDEF domain APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:3.40.50.2300 367 487 1.3E-11 T 06-07-2017 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SMART SM00267 608 781 3.9E-39 T 06-07-2017 IPR000160 GGDEF domain APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 SUPERFAMILY SSF47226 270 362 1.96E-9 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 APT55_RS26720 c0cae8dbf03766fb3cbf5fd93b615c49 797 Gene3D G3DSA:3.30.70.270 621 776 8.1E-44 T 06-07-2017 APT55_RS25130 eab3930f29f1b8910759fe413a108920 339 Gene3D G3DSA:1.10.3470.10 19 336 1.3E-96 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25130 eab3930f29f1b8910759fe413a108920 339 SUPERFAMILY SSF81345 16 333 1.7E-78 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25130 eab3930f29f1b8910759fe413a108920 339 Pfam PF01032 FecCD transport family 26 333 2.8E-91 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 Gene3D G3DSA:3.50.50.60 2 152 1.8E-8 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 SUPERFAMILY SSF51905 263 382 4.21E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 SUPERFAMILY SSF51905 1 219 4.21E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 Gene3D G3DSA:3.50.50.60 170 218 2.3E-13 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 Gene3D G3DSA:3.50.50.60 258 316 2.3E-13 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS07275 12e2e3f5376fe89d886937d5f4b17135 401 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 319 1.2E-38 T 06-07-2017 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 Gene3D G3DSA:3.80.30.20 194 412 4.5E-34 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 Pfam PF13282 Domain of unknown function (DUF4070) 386 526 4.0E-30 T 06-07-2017 IPR025274 Domain of unknown function DUF4070 APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 Pfam PF04055 Radical SAM superfamily 200 367 1.4E-14 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 SUPERFAMILY SSF102114 174 398 2.35E-37 T 06-07-2017 APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 Pfam PF02310 B12 binding domain 51 148 5.5E-9 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT55_RS28890 8cd11ee995365ee6ff1ea99e459f1f3c 538 SMART SM00729 194 405 3.0E-14 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS15180 47410017cbc701565635838e953d30ae 285 Gene3D G3DSA:3.40.50.1010 20 158 3.6E-29 T 06-07-2017 IPR029060 PIN domain-like APT55_RS15180 47410017cbc701565635838e953d30ae 285 Pfam PF01936 NYN domain 23 156 2.6E-30 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS15180 47410017cbc701565635838e953d30ae 285 Pfam PF12872 OST-HTH/LOTUS domain 205 272 1.8E-11 T 06-07-2017 IPR025605 OST-HTH/LOTUS domain APT55_RS06790 e0dba9c15293977adaff575877a6a506 156 Pfam PF02605 Photosystem I reaction centre subunit XI 6 144 1.3E-62 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS06790 e0dba9c15293977adaff575877a6a506 156 SUPERFAMILY SSF81568 6 155 5.89E-60 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS06790 e0dba9c15293977adaff575877a6a506 156 ProDom PD005947 PHOTOSYSTEM SUBUNIT I XI REACTION CENTER MEMBRANE PSI PHOTOSYNTHESIS V 6 121 9.0E-40 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS06790 e0dba9c15293977adaff575877a6a506 156 Hamap MF_00447 Photosystem I reaction center subunit XI [psaL]. 6 148 34.027 T 06-07-2017 IPR022980 Photosystem I, reaction centre subunit XI APT55_RS06790 e0dba9c15293977adaff575877a6a506 156 Gene3D G3DSA:1.20.1240.10 4 155 8.8E-67 T 06-07-2017 IPR003757 Photosystem I PsaL, reaction centre subunit XI GO:0009522|GO:0009538|GO:0015979 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 547 560 - T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 Gene3D G3DSA:3.40.50.300 367 573 2.1E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 SMART SM00962 372 574 1.4E-103 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 Pfam PF00448 SRP54-type protein, GTPase domain 373 573 2.2E-73 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 SUPERFAMILY SSF52540 319 572 2.92E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 Pfam PF02881 SRP54-type protein, helical bundle domain 285 348 3.8E-7 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 SMART SM00382 371 574 3.9E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 297 574 57.175 T 06-07-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 Gene3D G3DSA:1.20.120.140 259 348 8.1E-22 T 06-07-2017 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 299 572 2.2E-102 T 06-07-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APT55_RS10780 0f3b35c463cdd1e92fcad48b70cb1f6b 575 SMART SM00963 274 353 6.9E-14 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT55_RS15305 f402f125c8429f302e236171975f89c8 464 PIRSF PIRSF016565 1 464 1.0E-167 T 06-07-2017 IPR026036 PucC protein APT55_RS15305 f402f125c8429f302e236171975f89c8 464 SUPERFAMILY SSF103473 6 439 1.57E-26 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS15305 f402f125c8429f302e236171975f89c8 464 Gene3D G3DSA:1.20.1250.20 25 227 8.2E-8 T 06-07-2017 APT55_RS15305 f402f125c8429f302e236171975f89c8 464 Gene3D G3DSA:1.20.1250.20 254 439 2.0E-8 T 06-07-2017 APT55_RS15305 f402f125c8429f302e236171975f89c8 464 Pfam PF03209 PUCC protein 35 445 3.9E-121 T 06-07-2017 IPR004896 PucC-related APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 Pfam PF00005 ABC transporter 19 160 1.1E-38 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 SMART SM00382 27 210 3.2E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 Gene3D G3DSA:3.40.50.300 3 233 3.1E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 238 3.2E-131 T 06-07-2017 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 Pfam PF12857 TOBE-like domain 274 328 6.1E-8 T 06-07-2017 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 SUPERFAMILY SSF50331 254 330 5.53E-8 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS02965 1ddf0f1eca0ca9fa1f34aa3ba4fdc886 339 SUPERFAMILY SSF52540 3 240 3.96E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06990 8c48368ddbe077e49bacdf402cf9830a 105 Gene3D G3DSA:3.30.70.900 1 65 3.5E-8 T 06-07-2017 APT55_RS06990 8c48368ddbe077e49bacdf402cf9830a 105 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 65 9.4E-6 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain APT55_RS06990 8c48368ddbe077e49bacdf402cf9830a 105 TIGRFAM TIGR03792 TIGR03792: uncharacterized cyanobacterial protein, TIGR03792 family 2 89 6.1E-31 T 06-07-2017 IPR022512 Conserved hypothetical protein CHP03792 APT55_RS06990 8c48368ddbe077e49bacdf402cf9830a 105 SUPERFAMILY SSF54909 1 70 3.58E-9 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS07215 8e83882cce4ef188fdf9a7114d1ee076 616 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 135 253 3.6E-7 T 06-07-2017 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 1.1E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 1.1E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 1.1E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 1.1E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 240 264 1.1E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 9 495 5.2E-178 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 Hamap MF_00491 NAD(P)H-quinone oxidoreductase chain 4 [ndhD]. 3 500 39.838 T 06-07-2017 IPR022997 NADH-quinone oxidoreductase chain 4 GO:0016655|GO:0055114 APT55_RS24605 090e8940211bf9ef8330679a2e3cbc9e 531 Pfam PF00361 Proton-conducting membrane transporter 133 417 1.2E-67 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 Gene3D G3DSA:3.30.70.270 151 313 7.0E-51 T 06-07-2017 APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 SUPERFAMILY SSF52172 10 148 2.56E-38 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 Gene3D G3DSA:3.40.50.2300 10 142 1.1E-39 T 06-07-2017 APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 Pfam PF00990 Diguanylate cyclase, GGDEF domain 149 310 1.5E-51 T 06-07-2017 IPR000160 GGDEF domain APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 SMART SM00448 12 125 2.7E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 SUPERFAMILY SSF55073 154 313 3.45E-48 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 SMART SM00267 138 314 4.1E-67 T 06-07-2017 IPR000160 GGDEF domain APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 Pfam PF00072 Response regulator receiver domain 14 125 2.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS00100 2cdf551ebc08993ef45964ceafde3be2 316 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 145 311 9.4E-54 T 06-07-2017 IPR000160 GGDEF domain APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 Gene3D G3DSA:3.30.300.70 8 80 1.3E-14 T 06-07-2017 IPR028989 Ribosome maturation factor RimP, N-terminal APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 Pfam PF02576 Putative ribosome maturation factor RimP 13 146 6.1E-23 T 06-07-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 7 151 16.843 T 06-07-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 SUPERFAMILY SSF74942 86 148 4.05E-8 T 06-07-2017 IPR028998 Ribosome maturation factor RimP, C-terminal APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 Gene3D G3DSA:2.30.30.180 89 147 2.6E-5 T 06-07-2017 IPR028998 Ribosome maturation factor RimP, C-terminal APT55_RS17420 0753e41dba0cea2cb5d548d213cefe14 153 SUPERFAMILY SSF75420 1 82 1.03E-17 T 06-07-2017 IPR028989 Ribosome maturation factor RimP, N-terminal APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 230 428 2.2E-46 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 SUPERFAMILY SSF56601 88 450 1.19E-73 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 230 446 6.1E-51 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 Gene3D G3DSA:3.40.710.10 225 449 1.6E-59 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 Gene3D G3DSA:3.40.710.10 104 142 4.7E-4 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 329 343 8.6E-25 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 406 419 8.6E-25 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 344 358 8.6E-25 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 114 133 8.6E-25 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS21305 c4afffbbe8c1d6ef4ac5723de4a4c175 453 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 270 292 8.6E-25 T 06-07-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT55_RS03230 5ac42cae69c7631df5f03939c99cb9ff 409 Gene3D G3DSA:3.20.20.140 70 393 6.0E-81 T 06-07-2017 APT55_RS03230 5ac42cae69c7631df5f03939c99cb9ff 409 SUPERFAMILY SSF51556 55 357 4.54E-79 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS03230 5ac42cae69c7631df5f03939c99cb9ff 409 SUPERFAMILY SSF51338 3 64 2.01E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS03230 5ac42cae69c7631df5f03939c99cb9ff 409 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 21 400 2.6E-96 T 06-07-2017 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 APT55_RS03230 5ac42cae69c7631df5f03939c99cb9ff 409 Gene3D G3DSA:2.30.40.10 19 69 9.1E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 SUPERFAMILY SSF48498 85 196 1.33E-5 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 SUPERFAMILY SSF46689 3 63 6.98E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 Gene3D G3DSA:1.10.357.10 3 196 2.3E-31 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 Gene3D G3DSA:1.10.443.10 212 325 1.2E-4 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 SUPERFAMILY SSF56349 211 325 7.36E-6 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 9.0E-13 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.5E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS22445 e6214eca1bcc4bbd0567bd58436aae72 391 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.5E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS07250 5ee103bd1f5b4408d097e39203be9f65 284 Pfam PF00950 ABC 3 transport family 11 265 1.0E-76 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APT55_RS07250 5ee103bd1f5b4408d097e39203be9f65 284 Gene3D G3DSA:1.10.3470.10 37 264 5.5E-7 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS07250 5ee103bd1f5b4408d097e39203be9f65 284 SUPERFAMILY SSF81345 6 263 1.44E-40 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 06-07-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 SUPERFAMILY SSF52313 6 234 1.44E-96 T 06-07-2017 IPR023591 Ribosomal protein S2, flavodoxin-like domain APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 Gene3D G3DSA:1.10.287.610 100 152 2.8E-26 T 06-07-2017 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 Gene3D G3DSA:3.40.50.10490 23 99 1.2E-71 T 06-07-2017 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 Gene3D G3DSA:3.40.50.10490 158 251 1.2E-71 T 06-07-2017 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 Pfam PF00318 Ribosomal protein S2 9 224 1.4E-93 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 6 24 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 158 175 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 87 104 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 175 186 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 37 46 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 PRINTS PR00395 Ribosomal protein S2 signature 196 210 4.9E-43 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 43.487 T 06-07-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 2.7E-105 T 06-07-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 APT55_RS01940 4a0be35fbe135f762fe12f92ed6d28e7 259 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 06-07-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 432 449 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 380 399 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 282 308 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 143 167 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 42 61 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PRINTS PR01806 Virulence factor MviN signature 167 188 1.2E-12 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 Pfam PF03023 MviN-like protein 37 491 2.5E-101 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 12 531 2.4E-118 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS02380 2ed172bdeecd54d0985f071109c58af7 541 PIRSF PIRSF002869 8 537 1.3E-90 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS18960 65e2431d942c8af1b745901de03274f2 156 Pfam PF13301 Protein of unknown function (DUF4079) 14 152 3.4E-45 T 06-07-2017 IPR025067 Protein of unknown function DUF4079 APT55_RS22280 811d2beb716b1f534abe9a1a97802b02 472 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 12 84 8.0E-24 T 06-07-2017 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 APT55_RS22280 811d2beb716b1f534abe9a1a97802b02 472 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 236 462 7.8E-56 T 06-07-2017 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 Gene3D G3DSA:3.40.190.10 194 285 3.8E-22 T 06-07-2017 APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 Gene3D G3DSA:3.40.190.10 103 193 2.2E-23 T 06-07-2017 APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 SUPERFAMILY SSF46785 10 102 2.49E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 Pfam PF03466 LysR substrate binding domain 102 310 6.4E-39 T 06-07-2017 IPR005119 LysR, substrate-binding APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 Gene3D G3DSA:1.10.10.10 10 100 5.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 77 3.7E-14 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT55_RS04350 547df9d7eb60ae5e2c9fba3d9a1418a2 319 SUPERFAMILY SSF53850 104 312 4.34E-33 T 06-07-2017 APT55_RS20700 f1d6654ad3309cb3178da7fa929af67b 280 SMART SM00554 162 260 9.0E-25 T 06-07-2017 IPR000782 FAS1 domain APT55_RS20700 f1d6654ad3309cb3178da7fa929af67b 280 Gene3D G3DSA:2.30.180.10 123 260 4.7E-29 T 06-07-2017 IPR000782 FAS1 domain APT55_RS20700 f1d6654ad3309cb3178da7fa929af67b 280 SUPERFAMILY SSF82153 122 260 6.15E-29 T 06-07-2017 IPR000782 FAS1 domain APT55_RS20700 f1d6654ad3309cb3178da7fa929af67b 280 Pfam PF02469 Fasciclin domain 138 258 1.3E-23 T 06-07-2017 IPR000782 FAS1 domain APT55_RS24065 34ca16902b0a46d5be26515071039a97 534 Pfam PF11832 Protein of unknown function (DUF3352) 12 533 8.2E-166 T 06-07-2017 IPR021787 Protein of unknown function DUF3352 APT55_RS30720 dbf0c21603de6907ae9333aade9b36f2 353 Gene3D G3DSA:3.60.130.10 47 189 7.9E-67 T 06-07-2017 APT55_RS30720 dbf0c21603de6907ae9333aade9b36f2 353 Gene3D G3DSA:3.60.130.10 221 342 7.9E-67 T 06-07-2017 APT55_RS30720 dbf0c21603de6907ae9333aade9b36f2 353 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 52 339 1.1E-48 T 06-07-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 APT55_RS30720 dbf0c21603de6907ae9333aade9b36f2 353 SUPERFAMILY SSF51197 41 340 5.95E-89 T 06-07-2017 APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 11 400 52.123 T 06-07-2017 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 SUPERFAMILY SSF52440 6 115 5.18E-31 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 Gene3D G3DSA:3.30.1490.20 126 201 6.6E-27 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 Gene3D G3DSA:3.40.50.20 9 123 2.6E-37 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 Gene3D G3DSA:3.30.470.20 202 396 2.3E-71 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 Pfam PF02222 ATP-grasp domain 126 303 5.0E-55 T 06-07-2017 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 17 399 8.2E-179 T 06-07-2017 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APT55_RS14380 77252e42d276e3d2723c7108926f9ac5 410 SUPERFAMILY SSF56059 123 393 4.99E-57 T 06-07-2017 APT55_RS02495 49e4e16b9aa53c054e11fd4e7421975e 105 SUPERFAMILY SSF46626 1 104 2.36E-20 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS02495 49e4e16b9aa53c054e11fd4e7421975e 105 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 24 96 3.8E-12 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS02495 49e4e16b9aa53c054e11fd4e7421975e 105 PRINTS PR00605 Class IC cytochrome C signature 74 96 3.2E-8 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS02495 49e4e16b9aa53c054e11fd4e7421975e 105 PRINTS PR00605 Class IC cytochrome C signature 31 42 3.2E-8 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS02495 49e4e16b9aa53c054e11fd4e7421975e 105 Gene3D G3DSA:1.10.760.10 26 104 2.9E-21 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS14570 f80c10b42de306b2308773b54e64c9cf 172 Pfam PF14279 HNH endonuclease 95 146 2.5E-18 T 06-07-2017 IPR029471 HNH endonuclease 5 APT55_RS14570 f80c10b42de306b2308773b54e64c9cf 172 SMART SM00507 82 132 3.6E-15 T 06-07-2017 IPR003615 HNH nuclease APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 SUPERFAMILY SSF50621 257 392 9.07E-50 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 SMART SM01005 263 391 7.4E-70 T 06-07-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 TIGRFAM TIGR00492 alr: alanine racemase 17 391 1.2E-121 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 Gene3D G3DSA:3.20.20.10 24 235 1.7E-71 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 SUPERFAMILY SSF51419 22 264 7.2E-67 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 46 56 - T 06-07-2017 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 Pfam PF00842 Alanine racemase, C-terminal domain 263 389 9.7E-40 T 06-07-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 Gene3D G3DSA:2.40.37.10 236 393 6.3E-59 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 77 95 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 373 386 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 41 57 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 137 149 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 279 294 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 171 182 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 317 334 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 215 242 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 PRINTS PR00992 Alanine racemase signature 296 311 1.9E-63 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 Hamap MF_01201 Alanine racemase. 15 391 33.095 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS01480 0333956e3589e9f23cab864104f73d0f 410 Pfam PF01168 Alanine racemase, N-terminal domain 22 242 8.0E-66 T 06-07-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF00501 AMP-binding enzyme 507 897 3.6E-95 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF13193 AMP-binding enzyme C-terminal domain 905 978 2.4E-10 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:3.30.300.30 891 989 1.2E-34 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:2.30.38.10 812 887 1.9E-20 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SUPERFAMILY SSF52777 228 492 1.07E-60 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 PRINTS PR00154 AMP-binding signature 641 652 5.5E-5 T 06-07-2017 IPR020459 AMP-binding APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 PRINTS PR00154 AMP-binding signature 653 661 5.5E-5 T 06-07-2017 IPR020459 AMP-binding APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF00668 Condensation domain 44 344 7.4E-76 T 06-07-2017 IPR001242 Condensation domain APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:3.40.50.980 656 811 3.5E-39 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SUPERFAMILY SSF53474 1100 1338 4.87E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF13745 HxxPF-repeated domain 366 453 1.7E-28 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SMART SM00823 Phosphopantetheine attachment site 1007 1076 8.2E-6 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 528 921 6.8E-124 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF00975 Thioesterase domain 1124 1336 2.3E-18 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Pfam PF00550 Phosphopantetheine attachment site 1009 1072 1.5E-11 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:3.40.50.1820 1083 1187 2.6E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:3.40.50.1820 1270 1339 2.6E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:3.40.50.980 500 655 5.5E-57 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SUPERFAMILY SSF52777 49 220 4.34E-52 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 ProSitePatterns PS00455 Putative AMP-binding domain signature. 646 657 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SUPERFAMILY SSF56801 465 1017 2.75E-147 T 06-07-2017 APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 SUPERFAMILY SSF47336 1004 1073 8.64E-18 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09615 bba5414e4d21e53d6b8a6f24a0426c06 1344 Gene3D G3DSA:1.10.1200.10 1003 1076 3.4E-22 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 190 5.8E-45 T 06-07-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 SUPERFAMILY SSF48179 191 306 5.61E-23 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 351 401 1.8E-7 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 193 292 3.6E-13 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 SUPERFAMILY SSF51735 5 191 3.16E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Gene3D G3DSA:3.90.226.10 446 589 1.2E-31 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 SUPERFAMILY SSF48179 344 412 8.25E-15 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 SUPERFAMILY SSF52096 431 744 5.39E-42 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Gene3D G3DSA:1.10.1040.10 347 403 2.1E-12 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Gene3D G3DSA:1.10.1040.10 194 293 5.0E-18 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Gene3D G3DSA:3.40.50.720 4 193 3.7E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03470 35cf4553898ecfea1f910900dd8f8385 748 Pfam PF00378 Enoyl-CoA hydratase/isomerase 449 588 7.4E-23 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 SMART SM00387 250 360 3.2E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 SUPERFAMILY SSF55874 190 360 8.91E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 Gene3D G3DSA:1.10.287.130 124 195 5.9E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 Gene3D G3DSA:3.30.565.10 202 358 1.6E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 250 358 1.0E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 315 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 338 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 301 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 344 357 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 SMART SM00388 132 200 2.2E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 SUPERFAMILY SSF47384 120 200 4.71E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29010 6bf3835525ceb07ec411c531b7a192c3 365 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 199 2.7E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06540 737d6c95dd1f03b3b50e219a11e75ada 167 Gene3D G3DSA:2.20.25.10 2 41 5.4E-4 T 06-07-2017 APT55_RS06540 737d6c95dd1f03b3b50e219a11e75ada 167 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 155 69.952 T 06-07-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APT55_RS06540 737d6c95dd1f03b3b50e219a11e75ada 167 Pfam PF03477 ATP cone domain 50 134 2.8E-13 T 06-07-2017 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APT55_RS06540 737d6c95dd1f03b3b50e219a11e75ada 167 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 1.4E-52 T 06-07-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APT55_RS14980 34dbd339a4f7de95ca08dfa9d4838925 347 Pfam PF00534 Glycosyl transferases group 1 175 328 2.1E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS14980 34dbd339a4f7de95ca08dfa9d4838925 347 SUPERFAMILY SSF53756 1 345 2.86E-45 T 06-07-2017 APT55_RS14980 34dbd339a4f7de95ca08dfa9d4838925 347 Gene3D G3DSA:3.40.50.2000 172 327 1.3E-14 T 06-07-2017 APT55_RS13265 b936c26b3ad890d9061ae2d7ad61b7bd 149 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 1 130 1.3E-41 T 06-07-2017 IPR027565 Cupin fold metalloprotein, WbuC family APT55_RS13265 b936c26b3ad890d9061ae2d7ad61b7bd 149 SUPERFAMILY SSF51182 21 118 4.67E-9 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS05570 99778c8b92eadde30071be23ac920d80 386 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 77 353 5.6E-33 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS05570 99778c8b92eadde30071be23ac920d80 386 Gene3D G3DSA:1.10.10.10 294 351 1.6E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05570 99778c8b92eadde30071be23ac920d80 386 SUPERFAMILY SSF88659 290 350 2.99E-8 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS28955 aa80871ed58ef10fc725e39ac1e22592 347 Gene3D G3DSA:2.102.10.10 30 145 2.9E-29 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS28955 aa80871ed58ef10fc725e39ac1e22592 347 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 70 92 - T 06-07-2017 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 APT55_RS28955 aa80871ed58ef10fc725e39ac1e22592 347 SUPERFAMILY SSF50022 23 145 4.19E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS28955 aa80871ed58ef10fc725e39ac1e22592 347 Pfam PF00355 Rieske [2Fe-2S] domain 31 121 2.0E-16 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS28955 aa80871ed58ef10fc725e39ac1e22592 347 SUPERFAMILY SSF55961 141 340 9.06E-28 T 06-07-2017 APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 Gene3D G3DSA:3.40.50.300 250 461 5.4E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 SMART SM00382 23 209 4.8E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 Gene3D G3DSA:3.40.50.300 3 227 4.6E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 SUPERFAMILY SSF52540 241 461 1.3E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 Pfam PF00005 ABC transporter 16 162 2.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 Pfam PF00005 ABC transporter 266 408 1.1E-9 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 ProSitePatterns PS00211 ABC transporters family signature. 381 395 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS30935 774538cb863f29a3c42cae63a9c31bbd 487 SUPERFAMILY SSF52540 3 222 7.48E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18670 b33cb1f58091b537b71bd01d61317192 313 SUPERFAMILY SSF52540 88 276 7.0E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18670 b33cb1f58091b537b71bd01d61317192 313 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 57 283 5.3E-116 T 06-07-2017 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 APT55_RS18670 b33cb1f58091b537b71bd01d61317192 313 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 57 281 8.1E-106 T 06-07-2017 IPR022488 Polyphosphate kinase-2-related APT55_RS18670 b33cb1f58091b537b71bd01d61317192 313 PIRSF PIRSF028756 10 313 2.6E-130 T 06-07-2017 IPR016898 Polyphosphate kinase 2 APT55_RS18670 b33cb1f58091b537b71bd01d61317192 313 Gene3D G3DSA:3.40.50.300 25 291 6.9E-107 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00235 346855e34d93343e84bbeb58d62c15e5 688 SUPERFAMILY SSF51905 172 348 1.54E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00235 346855e34d93343e84bbeb58d62c15e5 688 SUPERFAMILY SSF51905 449 553 1.54E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00235 346855e34d93343e84bbeb58d62c15e5 688 Gene3D G3DSA:3.50.50.60 454 487 3.8E-12 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00235 346855e34d93343e84bbeb58d62c15e5 688 Gene3D G3DSA:3.50.50.60 172 343 3.8E-12 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS31015 b58f80735ac9474f58277765fd99e607 689 Pfam PF12696 TraM recognition site of TraD and TraG 406 538 6.1E-10 T 06-07-2017 IPR032689 TraD/TraG, TraM recognition site APT55_RS31015 b58f80735ac9474f58277765fd99e607 689 Gene3D G3DSA:3.40.50.300 350 538 1.7E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31015 b58f80735ac9474f58277765fd99e607 689 Gene3D G3DSA:3.40.50.300 111 213 1.7E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31015 b58f80735ac9474f58277765fd99e607 689 SUPERFAMILY SSF52540 117 538 4.52E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16320 e8b80aff2e3caab38cd0a9dd5ece831c 354 SUPERFAMILY SSF103481 206 310 5.62E-14 T 06-07-2017 APT55_RS16320 e8b80aff2e3caab38cd0a9dd5ece831c 354 SUPERFAMILY SSF103481 41 142 9.68E-16 T 06-07-2017 APT55_RS16320 e8b80aff2e3caab38cd0a9dd5ece831c 354 Pfam PF00892 EamA-like transporter family 173 307 2.8E-25 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS16320 e8b80aff2e3caab38cd0a9dd5ece831c 354 Pfam PF00892 EamA-like transporter family 9 138 5.5E-21 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS06815 7ccf695edafdfa1898f1020e3e7cb7bb 133 Pfam PF10990 Protein of unknown function (DUF2809) 28 111 3.4E-27 T 06-07-2017 IPR021257 Protein of unknown function DUF2809 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 TIGRFAM TIGR02656 cyanin_plasto: plastocyanin 38 134 4.6E-29 T 06-07-2017 IPR002387 Plastocyanin GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 SUPERFAMILY SSF49503 36 133 1.01E-19 T 06-07-2017 IPR008972 Cupredoxin APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00157 Plastocyanin signature 113 132 3.7E-14 T 06-07-2017 IPR002387 Plastocyanin GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00157 Plastocyanin signature 41 60 3.7E-14 T 06-07-2017 IPR002387 Plastocyanin GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00157 Plastocyanin signature 64 82 3.7E-14 T 06-07-2017 IPR002387 Plastocyanin GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00156 Type I copper blue protein family signature 111 125 1.4E-6 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00156 Type I copper blue protein family signature 70 85 1.4E-6 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 PRINTS PR00156 Type I copper blue protein family signature 55 68 1.4E-6 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 113 127 - T 06-07-2017 IPR028871 Blue (type 1) copper protein, binding site APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 Gene3D G3DSA:2.60.40.420 36 134 1.1E-21 T 06-07-2017 IPR008972 Cupredoxin APT55_RS03395 b3bdd54156ffab50c1687df6bb69e777 134 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 40 134 2.4E-18 T 06-07-2017 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 APT55_RS14870 30b8193e13eca7e2dc2b7bdf103a6df2 502 Pfam PF02517 CAAX protease self-immunity 403 488 2.0E-20 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS05340 3ac888d46d62c8e6e445f597e3d05c9e 248 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 30 235 7.8E-88 T 06-07-2017 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 APT55_RS05340 3ac888d46d62c8e6e445f597e3d05c9e 248 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 30 244 29.33 T 06-07-2017 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 APT55_RS05340 3ac888d46d62c8e6e445f597e3d05c9e 248 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 31 236 6.1E-51 T 06-07-2017 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 APT55_RS10550 1b7e58355edb1ca150348e0cde3813a0 233 SUPERFAMILY SSF53335 20 202 1.66E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10550 1b7e58355edb1ca150348e0cde3813a0 233 Pfam PF08241 Methyltransferase domain 93 146 9.2E-12 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS10550 1b7e58355edb1ca150348e0cde3813a0 233 Gene3D G3DSA:3.40.50.150 87 201 9.6E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SUPERFAMILY SSF57997 410 503 1.77E-5 T 06-07-2017 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SUPERFAMILY SSF55785 488 609 2.09E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SMART SM00138 7 268 9.0E-76 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Gene3D G3DSA:3.40.50.150 72 267 4.7E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Gene3D G3DSA:1.10.155.10 6 70 2.5E-14 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Gene3D G3DSA:3.30.450.20 496 611 1.6E-17 T 06-07-2017 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Gene3D G3DSA:3.30.450.20 302 410 1.4E-10 T 06-07-2017 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SUPERFAMILY SSF53335 73 267 2.36E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 208 222 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 29 42 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 66 78 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 142 158 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 227 250 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 1.9E-28 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 60 9.0E-15 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Pfam PF00989 PAS fold 301 409 1.7E-7 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Pfam PF00989 PAS fold 502 611 3.1E-12 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 498 610 1.5E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 301 419 4.4E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 Pfam PF01739 CheR methyltransferase, SAM binding domain 73 264 2.1E-51 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SMART SM00091 501 567 5.4E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SMART SM00091 299 364 3.1 T 06-07-2017 IPR000014 PAS domain APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SUPERFAMILY SSF47757 6 75 3.92E-13 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS11255 5d5e34d1f08fab1b30ad069e1671e78e 621 SUPERFAMILY SSF55785 300 410 5.23E-9 T 06-07-2017 IPR000014 PAS domain APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 9 362 1.2E-125 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 PIRSF PIRSF009283 1 362 1.1E-128 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 Gene3D G3DSA:3.10.180.10 2 167 1.3E-42 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 114 2.8E-9 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 166 316 3.7E-13 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 Gene3D G3DSA:3.10.180.10 168 362 3.6E-78 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS00330 4995e4e8ac2eddb2aa6a880b248ed222 362 SUPERFAMILY SSF54593 2 349 3.84E-86 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS00950 820dfedb56323075d35b0921a3c03836 654 SMART SM00240 25 85 6.8E-9 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS00950 820dfedb56323075d35b0921a3c03836 654 Pfam PF00498 FHA domain 27 99 8.2E-12 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS00950 820dfedb56323075d35b0921a3c03836 654 Gene3D G3DSA:2.60.200.20 24 106 1.5E-16 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS00950 820dfedb56323075d35b0921a3c03836 654 SUPERFAMILY SSF49879 24 113 7.46E-17 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS26525 55d820d73d34af1b1d7b84b9dce38396 425 Pfam PF00534 Glycosyl transferases group 1 223 384 2.8E-18 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS26525 55d820d73d34af1b1d7b84b9dce38396 425 Gene3D G3DSA:3.40.50.2000 23 188 7.5E-5 T 06-07-2017 APT55_RS26525 55d820d73d34af1b1d7b84b9dce38396 425 Gene3D G3DSA:3.40.50.2000 191 304 5.2E-9 T 06-07-2017 APT55_RS26525 55d820d73d34af1b1d7b84b9dce38396 425 Pfam PF13579 Glycosyl transferase 4-like domain 16 200 1.1E-18 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS26525 55d820d73d34af1b1d7b84b9dce38396 425 SUPERFAMILY SSF53756 2 407 1.5E-61 T 06-07-2017 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 Pfam PF00421 Photosystem II protein 31 470 3.8E-155 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 SUPERFAMILY SSF161077 27 471 1.7E-202 T 06-07-2017 IPR000932 Photosystem antenna protein-like GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 Gene3D G3DSA:1.10.10.670 303 398 1.7E-58 T 06-07-2017 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 TIGRFAM TIGR01153 psbC: photosystem II 44 kDa subunit reaction center protein 32 463 2.7E-264 T 06-07-2017 IPR005869 Photosystem II CP43 reaction centre protein GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 Hamap MF_01496 Photosystem II CP43 reaction center protein [psbC]. 15 472 65.051 T 06-07-2017 IPR005869 Photosystem II CP43 reaction centre protein GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 APT55_RS11965 a51561eb9a294148fddc2e926229a7fe 472 TIGRFAM TIGR03041 PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein 34 304 7.6E-104 T 06-07-2017 APT55_RS12290 5ee1a5ee0628ee8f35965c5c4b21a4c6 416 Gene3D G3DSA:3.40.50.2000 167 351 1.7E-19 T 06-07-2017 APT55_RS12290 5ee1a5ee0628ee8f35965c5c4b21a4c6 416 Pfam PF00534 Glycosyl transferases group 1 196 347 6.8E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12290 5ee1a5ee0628ee8f35965c5c4b21a4c6 416 Pfam PF13439 Glycosyltransferase Family 4 16 183 5.3E-23 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS12290 5ee1a5ee0628ee8f35965c5c4b21a4c6 416 SUPERFAMILY SSF53756 1 374 5.02E-69 T 06-07-2017 APT55_RS24565 33b176fc962181233e1382edd6a4f8e1 195 Pfam PF05685 Putative restriction endonuclease 19 189 7.8E-41 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS24565 33b176fc962181233e1382edd6a4f8e1 195 Gene3D G3DSA:3.90.1570.10 13 191 4.9E-72 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS24565 33b176fc962181233e1382edd6a4f8e1 195 SUPERFAMILY SSF52980 12 191 3.75E-53 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS12805 4ed763f8290563f7bd476974e34fd290 97 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 31 49 - T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS12805 4ed763f8290563f7bd476974e34fd290 97 SUPERFAMILY SSF52833 4 93 3.69E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS12805 4ed763f8290563f7bd476974e34fd290 97 Gene3D G3DSA:3.40.30.10 3 89 5.4E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Pfam PF00512 His Kinase A (phospho-acceptor) domain 530 595 8.6E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Pfam PF00360 Phytochrome region 334 513 3.8E-64 T 06-07-2017 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SMART SM00388 529 597 5.3E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SUPERFAMILY SSF55785 13 129 4.1E-29 T 06-07-2017 IPR000014 PAS domain APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 639 746 6.9E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11095 42a938570e5085a9f0305368015634ca 762 PRINTS PR01033 Phytochrome signature 353 373 6.2E-25 T 06-07-2017 IPR001294 Phytochrome GO:0006355|GO:0009584 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 PRINTS PR01033 Phytochrome signature 168 187 6.2E-25 T 06-07-2017 IPR001294 Phytochrome GO:0006355|GO:0009584 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 PRINTS PR01033 Phytochrome signature 255 276 6.2E-25 T 06-07-2017 IPR001294 Phytochrome GO:0006355|GO:0009584 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 PRINTS PR01033 Phytochrome signature 436 455 6.2E-25 T 06-07-2017 IPR001294 Phytochrome GO:0006355|GO:0009584 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 PRINTS PR01033 Phytochrome signature 472 490 6.2E-25 T 06-07-2017 IPR001294 Phytochrome GO:0006355|GO:0009584 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SMART SM00387 638 749 7.5E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Gene3D G3DSA:3.30.565.10 606 748 5.2E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SUPERFAMILY SSF55781 328 515 2.84E-59 T 06-07-2017 IPR029016 GAF domain-like APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SMART SM00065 153 331 1.1E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Gene3D G3DSA:3.30.450.40 145 295 2.0E-13 T 06-07-2017 IPR029016 GAF domain-like APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SUPERFAMILY SSF55781 137 317 8.34E-61 T 06-07-2017 IPR029016 GAF domain-like APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Pfam PF01590 GAF domain 153 318 8.1E-22 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Gene3D G3DSA:1.10.287.130 520 593 2.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SUPERFAMILY SSF47384 514 595 3.14E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 Pfam PF08446 PAS fold 18 126 7.0E-24 T 06-07-2017 IPR013654 PAS fold-2 GO:0006355 APT55_RS11095 42a938570e5085a9f0305368015634ca 762 SUPERFAMILY SSF55874 587 747 1.76E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 PIRSF PIRSF039088 2 504 2.8E-245 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 SUPERFAMILY SSF50615 11 95 8.89E-29 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 372 496 5.9E-47 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 SUPERFAMILY SSF52540 97 371 5.6E-97 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Gene3D G3DSA:2.40.30.20 3 94 1.5E-36 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 93 3.2E-17 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 502 50.433 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 SUPERFAMILY SSF47917 373 500 1.57E-47 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Gene3D G3DSA:1.20.150.20 373 501 1.8E-52 T 06-07-2017 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Gene3D G3DSA:3.40.50.300 96 372 5.1E-116 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 500 1.1E-251 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 356 365 - T 06-07-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS08595 9e4ab090c6161744d002093ae57e42e6 505 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 365 1.2E-74 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 APT55_RS21195 5d2ceba15ee61a1295a9de66a8bb602e 104 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 2 96 22.132 T 06-07-2017 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS21195 5d2ceba15ee61a1295a9de66a8bb602e 104 Pfam PF01250 Ribosomal protein S6 5 93 3.2E-29 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS21195 5d2ceba15ee61a1295a9de66a8bb602e 104 Gene3D G3DSA:3.30.70.60 3 100 2.1E-35 T 06-07-2017 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 APT55_RS21195 5d2ceba15ee61a1295a9de66a8bb602e 104 TIGRFAM TIGR00166 S6: ribosomal protein bS6 4 95 5.4E-26 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS21195 5d2ceba15ee61a1295a9de66a8bb602e 104 SUPERFAMILY SSF54995 3 99 1.57E-33 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS05030 fbb681b3fa94063d815410cee6bb6cb2 426 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 32 403 1.8E-25 T 06-07-2017 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 APT55_RS28845 f931003822ea499e4523614a54d1dd29 210 Gene3D G3DSA:3.40.50.150 39 175 6.2E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28845 f931003822ea499e4523614a54d1dd29 210 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 23 209 1.1E-51 T 06-07-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APT55_RS28845 f931003822ea499e4523614a54d1dd29 210 SUPERFAMILY SSF53335 22 196 3.41E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28845 f931003822ea499e4523614a54d1dd29 210 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 6 210 23.935 T 06-07-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APT55_RS28845 f931003822ea499e4523614a54d1dd29 210 Pfam PF02390 Putative methyltransferase 35 205 1.6E-48 T 06-07-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 Gene3D G3DSA:2.160.20.10 418 427 2.6E-18 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 Gene3D G3DSA:2.160.20.10 44 285 2.6E-18 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 SUPERFAMILY SSF51126 503 645 1.44E-11 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 SUPERFAMILY SSF51126 339 442 3.77E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 56 133 2.0E-21 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 SUPERFAMILY SSF51126 22 321 1.76E-34 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 SMART SM00912 31 138 1.5E-18 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07405 ee2e15d60a0dad70d0f3b6e0324acceb 884 Pfam PF05860 haemagglutination activity domain 26 137 1.9E-25 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS15420 1c146d0f4f0b77d5c54d50d65275ff88 314 Gene3D G3DSA:3.40.50.720 1 171 1.3E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15420 1c146d0f4f0b77d5c54d50d65275ff88 314 SUPERFAMILY SSF51735 1 307 4.69E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS15420 1c146d0f4f0b77d5c54d50d65275ff88 314 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 239 7.9E-52 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS15420 1c146d0f4f0b77d5c54d50d65275ff88 314 Gene3D G3DSA:3.90.25.10 172 295 3.7E-30 T 06-07-2017 APT55_RS26820 39a9d9b0e239a2055641aabe80fe2da5 242 SUPERFAMILY SSF56281 37 208 3.16E-34 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26820 39a9d9b0e239a2055641aabe80fe2da5 242 Gene3D G3DSA:3.60.15.10 38 223 5.1E-45 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26820 39a9d9b0e239a2055641aabe80fe2da5 242 SMART SM00849 47 209 1.3E-10 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS30325 5f101fc7e0ca2c9ba5919777374289e3 125 SUPERFAMILY SSF54427 5 122 4.52E-28 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS30325 5f101fc7e0ca2c9ba5919777374289e3 125 Gene3D G3DSA:3.10.450.50 5 124 7.8E-38 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS30325 5f101fc7e0ca2c9ba5919777374289e3 125 Pfam PF14534 Domain of unknown function (DUF4440) 9 116 5.5E-20 T 06-07-2017 IPR027843 Domain of unknown function DUF4440 APT55_RS03900 4990061ca2a4c446b9f46f94a6ca8dce 343 Gene3D G3DSA:3.90.550.10 6 224 3.4E-5 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03900 4990061ca2a4c446b9f46f94a6ca8dce 343 SUPERFAMILY SSF53448 3 292 8.44E-18 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 Gene3D G3DSA:3.40.50.150 220 272 6.3E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 Gene3D G3DSA:3.40.50.150 332 391 6.3E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 Gene3D G3DSA:3.40.50.150 7 82 1.6E-10 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 242 247 - T 06-07-2017 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 Pfam PF01555 DNA methylase 28 80 7.8E-11 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 SUPERFAMILY SSF53335 214 247 1.96E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 SUPERFAMILY SSF53335 337 394 1.96E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 SUPERFAMILY SSF53335 15 91 1.96E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 SUPERFAMILY SSF53335 39 107 6.79E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25280 f3f0240dfe4cc76c5958448857817418 422 SUPERFAMILY SSF53335 145 321 6.79E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 Pfam PF00664 ABC transporter transmembrane region 27 287 6.5E-22 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 Gene3D G3DSA:3.40.50.300 339 574 1.2E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 Gene3D G3DSA:1.20.1560.10 12 319 1.3E-46 T 06-07-2017 APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 SUPERFAMILY SSF52540 336 573 4.28E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 SMART SM00382 364 550 9.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 Pfam PF00005 ABC transporter 355 503 3.0E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS25070 afe93a917c999dec5f80b9395bc35052 577 SUPERFAMILY SSF90123 12 321 1.07E-48 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS03390 c241f282b4f4741f7c0b3d3941eb0e48 168 SUPERFAMILY SSF46626 60 163 1.22E-19 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03390 c241f282b4f4741f7c0b3d3941eb0e48 168 Gene3D G3DSA:1.10.760.10 49 166 9.0E-30 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03390 c241f282b4f4741f7c0b3d3941eb0e48 168 PIRSF PIRSF005890 10 168 3.6E-43 T 06-07-2017 IPR016003 Photosystem II cytochrome c-550 precursor GO:0005506|GO:0009523|GO:0015979|GO:0020037|GO:0022904 APT55_RS03390 c241f282b4f4741f7c0b3d3941eb0e48 168 Pfam PF14495 Cytochrome c-550 domain 48 166 5.6E-41 T 06-07-2017 IPR029490 Cytochrome c-550 domain APT55_RS03390 c241f282b4f4741f7c0b3d3941eb0e48 168 TIGRFAM TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2 24 167 1.0E-62 T 06-07-2017 IPR017490 Photosystem II PsbV2, cytochrome GO:0009523|GO:0015979|GO:0016020|GO:0020037 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 SUPERFAMILY SSF55205 27 445 4.25E-133 T 06-07-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 27 445 3.9E-172 T 06-07-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 25 446 45.109 T 06-07-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 Gene3D G3DSA:3.65.10.10 249 445 6.2E-54 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 Gene3D G3DSA:3.65.10.10 45 248 2.6E-62 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS05225 c76624f0247c71c74bfd0707b6fb0758 460 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 32 436 1.7E-101 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Gene3D G3DSA:3.30.450.20 115 234 7.6E-10 T 06-07-2017 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Gene3D G3DSA:3.30.450.20 3 106 1.0E-18 T 06-07-2017 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Gene3D G3DSA:3.30.450.20 235 359 5.4E-17 T 06-07-2017 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 251 362 3.0E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 109 1.5E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SUPERFAMILY SSF55785 3 95 4.19E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SUPERFAMILY SSF55785 102 225 6.81E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SMART SM00091 248 314 5.2E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SMART SM00091 117 186 78.0 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SMART SM00091 1 67 4.1E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Pfam PF08448 PAS fold 8 108 1.1E-11 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Pfam PF00989 PAS fold 249 363 3.6E-12 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 Pfam PF13188 PAS domain 119 167 0.0029 T 06-07-2017 IPR000014 PAS domain APT55_RS15800 ed9727cddd366701e6f60e63dc3f6c45 365 SUPERFAMILY SSF55785 233 360 2.27E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS26300 24ec910ead41f06d136b29e3ef7104ff 117 Pfam PF01934 Protein of unknown function DUF86 15 105 5.6E-22 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS26300 24ec910ead41f06d136b29e3ef7104ff 117 Gene3D G3DSA:1.20.120.580 69 103 2.2E-4 T 06-07-2017 APT55_RS11050 a4f8e99bf85c26a1aa49331237e66a0b 210 Gene3D G3DSA:2.160.10.10 16 208 1.9E-55 T 06-07-2017 APT55_RS11050 a4f8e99bf85c26a1aa49331237e66a0b 210 SUPERFAMILY SSF51161 18 206 3.47E-48 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS11050 a4f8e99bf85c26a1aa49331237e66a0b 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 115 150 5.1E-9 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS11050 a4f8e99bf85c26a1aa49331237e66a0b 210 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 124 152 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 SUPERFAMILY SSF53067 249 493 1.48E-64 T 06-07-2017 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 247 7.6E-65 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 SUPERFAMILY SSF53067 3 250 6.05E-66 T 06-07-2017 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 Gene3D G3DSA:3.30.420.40 1 247 1.3E-65 T 06-07-2017 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 PIRSF PIRSF000538 1 498 3.6E-147 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 Gene3D G3DSA:3.30.420.40 250 489 7.0E-58 T 06-07-2017 APT55_RS18645 3463c30380e6e8e258ac0dc28f6d469d 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 447 5.5E-38 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT55_RS19045 2d020e97a1a3f84296fe911ac8fa995c 105 Pfam PF11352 Protein of unknown function (DUF3155) 3 90 3.7E-50 T 06-07-2017 IPR021498 Protein of unknown function DUF3155 APT55_RS14930 961c46333de54c455c2bbba915107f09 287 Pfam PF01471 Putative peptidoglycan binding domain 22 86 1.0E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14930 961c46333de54c455c2bbba915107f09 287 SUPERFAMILY SSF53955 144 271 4.5E-26 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS14930 961c46333de54c455c2bbba915107f09 287 Gene3D G3DSA:3.30.20.10 192 229 3.2E-9 T 06-07-2017 APT55_RS14930 961c46333de54c455c2bbba915107f09 287 SUPERFAMILY SSF47090 21 88 5.02E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14930 961c46333de54c455c2bbba915107f09 287 Gene3D G3DSA:1.10.101.10 22 89 9.5E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS30110 1a2cfe3a5fb229b98b18dd7b09664ed2 267 Pfam PF05406 WGR domain 16 84 1.4E-10 T 06-07-2017 IPR008893 WGR domain APT55_RS30110 1a2cfe3a5fb229b98b18dd7b09664ed2 267 SMART SM00773 14 88 6.9E-5 T 06-07-2017 IPR008893 WGR domain APT55_RS30110 1a2cfe3a5fb229b98b18dd7b09664ed2 267 Gene3D G3DSA:2.20.140.10 20 85 4.5E-9 T 06-07-2017 IPR008893 WGR domain APT55_RS30110 1a2cfe3a5fb229b98b18dd7b09664ed2 267 Gene3D G3DSA:1.20.142.10 135 211 6.7E-4 T 06-07-2017 IPR004102 Poly(ADP-ribose) polymerase, regulatory domain GO:0003950|GO:0006471 APT55_RS30110 1a2cfe3a5fb229b98b18dd7b09664ed2 267 SUPERFAMILY SSF142921 15 86 5.49E-9 T 06-07-2017 IPR008893 WGR domain APT55_RS09170 f1201a77f40c71441e92bf956f52f6cc 116 Gene3D G3DSA:3.90.1030.10 1 115 8.4E-46 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09170 f1201a77f40c71441e92bf956f52f6cc 116 Pfam PF01196 Ribosomal protein L17 20 115 2.1E-33 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09170 f1201a77f40c71441e92bf956f52f6cc 116 SUPERFAMILY SSF64263 1 116 9.42E-43 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09170 f1201a77f40c71441e92bf956f52f6cc 116 TIGRFAM TIGR00059 L17: ribosomal protein bL17 10 116 7.8E-43 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09170 f1201a77f40c71441e92bf956f52f6cc 116 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.838 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS16150 c2acf695e8b108a87133140eefe01271 196 Gene3D G3DSA:3.90.1570.10 4 191 5.3E-24 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS16150 c2acf695e8b108a87133140eefe01271 196 Pfam PF05685 Putative restriction endonuclease 11 188 4.7E-34 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS16150 c2acf695e8b108a87133140eefe01271 196 SUPERFAMILY SSF52980 2 191 1.07E-24 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS17600 29729713c938475ea0653fc39a44b113 600 SMART SM00331 343 590 4.3E-36 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS17600 29729713c938475ea0653fc39a44b113 600 Gene3D G3DSA:3.60.40.10 326 589 8.1E-54 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS17600 29729713c938475ea0653fc39a44b113 600 SUPERFAMILY SSF81606 323 589 1.7E-48 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS17600 29729713c938475ea0653fc39a44b113 600 SMART SM00332 315 588 1.5E-22 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS17600 29729713c938475ea0653fc39a44b113 600 Pfam PF12773 Double zinc ribbon 4 48 7.9E-9 T 06-07-2017 IPR025874 Double zinc ribbon APT55_RS17600 29729713c938475ea0653fc39a44b113 600 Pfam PF13672 Protein phosphatase 2C 361 559 9.0E-10 T 06-07-2017 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Pfam PF13193 AMP-binding enzyme C-terminal domain 423 498 8.6E-11 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 SUPERFAMILY SSF47336 517 590 6.54E-20 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Gene3D G3DSA:2.30.38.10 335 404 2.8E-23 T 06-07-2017 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Gene3D G3DSA:1.10.1200.10 528 594 2.6E-26 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Gene3D G3DSA:3.30.300.30 410 527 5.5E-29 T 06-07-2017 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 ProSitePatterns PS00012 Phosphopantetheine attachment site. 549 564 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Pfam PF00501 AMP-binding enzyme 17 414 1.4E-87 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Pfam PF00550 Phosphopantetheine attachment site 525 590 9.8E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 SMART SM00823 Phosphopantetheine attachment site 524 594 0.001 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Gene3D G3DSA:3.40.50.980 173 334 9.0E-40 T 06-07-2017 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 SUPERFAMILY SSF56801 7 536 1.13E-139 T 06-07-2017 APT55_RS09625 fb49f83a8c4f30969b51fc6cf433453f 624 Gene3D G3DSA:3.40.50.980 8 172 2.1E-30 T 06-07-2017 APT55_RS02305 9020d99fc4701c1c8a2cddc119eb6526 187 Pfam PF12527 Protein of unknown function (DUF3727) 87 185 1.5E-32 T 06-07-2017 IPR022203 Protein of unknown function DUF3727 APT55_RS02305 9020d99fc4701c1c8a2cddc119eb6526 187 Pfam PF06949 Protein of unknown function (DUF1292) 21 84 7.8E-5 T 06-07-2017 IPR009711 Uncharacterised protein family UPF0473 APT55_RS02290 4df3c94ffeb26c2c90c5fd9298e538ce 740 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 240 410 2.2E-27 T 06-07-2017 IPR004477 ComEC/Rec2-related protein APT55_RS02290 4df3c94ffeb26c2c90c5fd9298e538ce 740 Pfam PF13567 Domain of unknown function (DUF4131) 12 180 6.4E-38 T 06-07-2017 IPR025405 Domain of unknown function DUF4131 APT55_RS02290 4df3c94ffeb26c2c90c5fd9298e538ce 740 Pfam PF03772 Competence protein 221 478 1.5E-50 T 06-07-2017 IPR004477 ComEC/Rec2-related protein APT55_RS03850 08197f087eeec64078e2ec58c9082f32 148 Pfam PF04273 Putative phosphatase (DUF442) 7 104 1.3E-12 T 06-07-2017 IPR005939 Beta-lactamase hydrolase-like GO:0016787 APT55_RS03850 08197f087eeec64078e2ec58c9082f32 148 Gene3D G3DSA:3.90.190.10 3 128 1.5E-27 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like APT55_RS03850 08197f087eeec64078e2ec58c9082f32 148 SUPERFAMILY SSF52799 4 128 6.68E-15 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like APT55_RS25715 d6903956716263f9334ef05346ad770a 241 Pfam PF00005 ABC transporter 22 166 3.9E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25715 d6903956716263f9334ef05346ad770a 241 Gene3D G3DSA:3.40.50.300 2 234 5.3E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25715 d6903956716263f9334ef05346ad770a 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS25715 d6903956716263f9334ef05346ad770a 241 SMART SM00382 31 216 9.5E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25715 d6903956716263f9334ef05346ad770a 241 SUPERFAMILY SSF52540 4 236 1.28E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23555 044f88cfed12c31c47ee57581efc7eaa 262 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 235 257 1.4E-6 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS23555 044f88cfed12c31c47ee57581efc7eaa 262 Pfam PF07589 PEP-CTERM motif 235 256 5.1E-5 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS10815 e0c804755d0a3c311b74e1623a1938b3 81 SUPERFAMILY SSF82657 2 80 2.88E-25 T 06-07-2017 IPR002634 BolA protein APT55_RS10815 e0c804755d0a3c311b74e1623a1938b3 81 Pfam PF01722 BolA-like protein 26 76 2.7E-18 T 06-07-2017 IPR002634 BolA protein APT55_RS10815 e0c804755d0a3c311b74e1623a1938b3 81 PIRSF PIRSF003113 1 81 2.7E-23 T 06-07-2017 IPR002634 BolA protein APT55_RS10815 e0c804755d0a3c311b74e1623a1938b3 81 Gene3D G3DSA:3.30.300.90 1 80 1.0E-26 T 06-07-2017 IPR002634 BolA protein APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 Pfam PF08751 TrwC relaxase 10 275 6.9E-48 T 06-07-2017 IPR014862 TrwC relaxase APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 Pfam PF13604 AAA domain 416 610 1.1E-24 T 06-07-2017 APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 SUPERFAMILY SSF55464 1 299 1.6E-42 T 06-07-2017 APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 SUPERFAMILY SSF52540 375 550 1.51E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 SUPERFAMILY SSF52540 541 593 9.29E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 SUPERFAMILY SSF52540 631 734 9.29E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31195 80009642d3ddd5d31fb60e18746797bb 808 Gene3D G3DSA:3.40.50.300 380 593 8.5E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21695 4047ec7ea7845567631ff0ff7c423a4e 188 Gene3D G3DSA:3.40.630.30 2 181 1.4E-45 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS21695 4047ec7ea7845567631ff0ff7c423a4e 188 Pfam PF13302 Acetyltransferase (GNAT) domain 11 157 8.6E-19 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS21695 4047ec7ea7845567631ff0ff7c423a4e 188 SUPERFAMILY SSF55729 2 181 3.17E-42 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS12885 820ae0daf32ff42cc5e0baf533099e65 801 Pfam PF00534 Glycosyl transferases group 1 558 731 2.5E-22 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS12885 820ae0daf32ff42cc5e0baf533099e65 801 SUPERFAMILY SSF53756 267 756 1.3E-50 T 06-07-2017 APT55_RS12885 820ae0daf32ff42cc5e0baf533099e65 801 Pfam PF00862 Sucrose synthase 2 545 9.7E-215 T 06-07-2017 IPR000368 Sucrose synthase GO:0005985|GO:0016157 APT55_RS12885 820ae0daf32ff42cc5e0baf533099e65 801 TIGRFAM TIGR02470 sucr_synth: sucrose synthase 15 795 0.0 T 06-07-2017 IPR012820 Sucrose synthase, plant/cyanobacteria GO:0005985|GO:0016157 KEGG: 00500+2.4.1.13|MetaCyc: PWY-3801 APT55_RS12885 820ae0daf32ff42cc5e0baf533099e65 801 Gene3D G3DSA:3.40.50.2000 540 739 5.5E-18 T 06-07-2017 APT55_RS24460 971bb62f3ce7f5d0de2683b50263e23f 151 Pfam PF00436 Single-strand binding protein family 1 97 7.4E-15 T 06-07-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APT55_RS24460 971bb62f3ce7f5d0de2683b50263e23f 151 SUPERFAMILY SSF50249 1 151 4.11E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS24460 971bb62f3ce7f5d0de2683b50263e23f 151 Gene3D G3DSA:2.40.50.140 1 151 1.0E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS23050 8599260c9e73ef7daab978d8bb76e1e8 275 Gene3D G3DSA:2.40.160.30 223 272 7.2E-81 T 06-07-2017 APT55_RS23050 8599260c9e73ef7daab978d8bb76e1e8 275 Gene3D G3DSA:2.40.160.30 53 182 7.2E-81 T 06-07-2017 APT55_RS23050 8599260c9e73ef7daab978d8bb76e1e8 275 SUPERFAMILY SSF56925 32 272 1.73E-103 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 APT55_RS23050 8599260c9e73ef7daab978d8bb76e1e8 275 Pfam PF01716 Manganese-stabilising protein / photosystem II polypeptide 32 271 1.3E-118 T 06-07-2017 IPR002628 Photosystem II PsbO, manganese-stabilising GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898|GO:0042549 APT55_RS23050 8599260c9e73ef7daab978d8bb76e1e8 275 Gene3D G3DSA:3.30.2050.10 183 215 3.3E-21 T 06-07-2017 APT55_RS15380 09693eab7fd3672e19b965c772c956f5 491 Gene3D G3DSA:2.40.160.10 153 418 3.7E-4 T 06-07-2017 IPR023614 Porin domain APT55_RS15380 09693eab7fd3672e19b965c772c956f5 491 Pfam PF04966 Carbohydrate-selective porin, OprB family 125 475 4.7E-24 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS15380 09693eab7fd3672e19b965c772c956f5 491 Pfam PF00395 S-layer homology domain 43 85 6.3E-12 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS15380 09693eab7fd3672e19b965c772c956f5 491 SUPERFAMILY SSF56935 151 396 2.71E-5 T 06-07-2017 APT55_RS15380 09693eab7fd3672e19b965c772c956f5 491 SUPERFAMILY SSF56935 440 460 2.71E-5 T 06-07-2017 APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Gene3D G3DSA:3.40.50.1220 184 332 5.0E-40 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 SUPERFAMILY SSF52518 355 540 4.83E-64 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Gene3D G3DSA:3.40.50.970 2 175 2.3E-68 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 415 434 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 524 1.0E-47 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 319 1.0E-35 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 SUPERFAMILY SSF52518 2 172 4.63E-55 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 167 1.6E-56 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 Gene3D G3DSA:3.40.50.970 350 540 1.4E-69 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17065 387dd97199d32ee1dc192f7b0d8a6179 545 SUPERFAMILY SSF52467 180 360 3.27E-40 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain APT55_RS18390 8ba393034772202cb57f6a57a3affab0 109 Gene3D G3DSA:1.10.1220.10 5 41 1.3E-5 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT55_RS25490 74ed8fc02a49d18f6bea41fe9cf4ba60 682 Pfam PF02706 Chain length determinant protein 10 145 2.5E-10 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS25490 74ed8fc02a49d18f6bea41fe9cf4ba60 682 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 500 665 7.8E-14 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS25490 74ed8fc02a49d18f6bea41fe9cf4ba60 682 SUPERFAMILY SSF52540 497 666 2.5E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25490 74ed8fc02a49d18f6bea41fe9cf4ba60 682 Pfam PF13807 G-rich domain on putative tyrosine kinase 362 438 6.5E-8 T 06-07-2017 IPR032807 Tyrosine kinase, G-rich domain APT55_RS25490 74ed8fc02a49d18f6bea41fe9cf4ba60 682 Gene3D G3DSA:3.40.50.300 498 660 1.7E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14215 d33b3b997e329156385c34173ab17eaa 339 SUPERFAMILY SSF51445 42 272 1.31E-25 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS14215 d33b3b997e329156385c34173ab17eaa 339 Pfam PF02449 Beta-galactosidase 43 162 3.7E-10 T 06-07-2017 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APT55_RS14215 d33b3b997e329156385c34173ab17eaa 339 Gene3D G3DSA:3.20.20.80 42 276 2.2E-24 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 PIRSF PIRSF039102 1 347 2.6E-112 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 95 106 - T 06-07-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Gene3D G3DSA:3.30.470.20 118 144 2.0E-49 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Gene3D G3DSA:3.30.470.20 220 345 2.0E-49 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 286 315 - T 06-07-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Pfam PF07478 D-ala D-ala ligase C-terminus 137 342 4.2E-77 T 06-07-2017 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 SUPERFAMILY SSF52440 3 127 1.44E-34 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 345 41.318 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Pfam PF01820 D-ala D-ala ligase N-terminus 5 118 6.2E-30 T 06-07-2017 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Gene3D G3DSA:3.30.1490.20 163 216 4.9E-24 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 SUPERFAMILY SSF56059 128 345 6.54E-59 T 06-07-2017 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 344 7.6E-115 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10540 c68b164f1c6e70b7b50ef7ba43cc59cc 347 Gene3D G3DSA:3.40.50.20 1 117 7.7E-31 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 Gene3D G3DSA:3.40.30.10 1 83 2.0E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 Gene3D G3DSA:1.20.1050.10 84 199 1.1E-49 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 Pfam PF00043 Glutathione S-transferase, C-terminal domain 135 196 1.8E-10 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 SUPERFAMILY SSF47616 78 206 2.18E-38 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 SUPERFAMILY SSF52833 1 85 4.49E-23 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18010 2aaf78d43d523cf5b3544e43b75ee3c9 234 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 2.9E-14 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 84 104 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 Pfam PF00484 Carbonic anhydrase 37 194 4.9E-48 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 SUPERFAMILY SSF53056 4 211 1.14E-60 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 Gene3D G3DSA:3.40.1050.10 3 209 4.7E-65 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 41 48 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS07950 a42845a569835fddc8f7ebab53ed1448 224 SMART SM00947 29 198 2.1E-56 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 22 82 11.978 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 17 62 4.0E-6 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 Gene3D G3DSA:1.10.287.1040 19 82 1.2E-14 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 Pfam PF02609 Exonuclease VII small subunit 23 73 3.1E-12 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 22 77 1.7E-12 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11060 1466f8d7d2c3b9b327b2e83b3c565f32 85 SUPERFAMILY SSF116842 17 82 5.49E-14 T 06-07-2017 APT55_RS22530 5923a37c9d98a059b8dc875babc62210 106 Pfam PF08865 Domain of unknown function (DUF1830) 18 83 9.1E-35 T 06-07-2017 IPR014964 Protein of unknown function DUF1830 APT55_RS22660 fa8f2a102ccfe2272d8e050683f443b4 165 Pfam PF04248 Domain of unknown function (DUF427) 32 123 9.7E-36 T 06-07-2017 IPR007361 Domain of unknown function DUF427 APT55_RS05795 118590f95b7b9ce5c0d11b1dbdabe162 200 Pfam PF05685 Putative restriction endonuclease 27 196 4.6E-39 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS05795 118590f95b7b9ce5c0d11b1dbdabe162 200 Gene3D G3DSA:3.90.1570.10 16 200 2.9E-71 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS05795 118590f95b7b9ce5c0d11b1dbdabe162 200 SUPERFAMILY SSF52980 17 200 4.24E-53 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 Gene3D G3DSA:1.20.1560.10 18 327 1.3E-22 T 06-07-2017 APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 Pfam PF00005 ABC transporter 363 517 4.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 SMART SM00382 372 563 1.9E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 SUPERFAMILY SSF90123 10 309 1.7E-26 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 Gene3D G3DSA:3.40.50.300 346 581 3.0E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 SUPERFAMILY SSF52540 337 587 9.5E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11165 3eb8ea1ab0b36ccc2955ed8348d3b8b3 592 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 266 281 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 230 241 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 45 59 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 13 26 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 93 104 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 PRINTS PR01041 Methionyl-tRNA synthetase signature 358 369 4.9E-34 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 7 99 1.3E-9 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Gene3D G3DSA:2.170.220.10 122 231 4.2E-43 T 06-07-2017 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Pfam PF09334 tRNA synthetases class I (M) 145 370 8.1E-62 T 06-07-2017 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Gene3D G3DSA:3.40.50.620 8 119 4.8E-67 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Gene3D G3DSA:3.40.50.620 232 343 4.8E-67 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Pfam PF08264 Anticodon-binding domain of tRNA 400 501 4.0E-8 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 SUPERFAMILY SSF52374 8 356 5.63E-105 T 06-07-2017 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 12 525 2.1E-163 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Gene3D G3DSA:1.10.730.10 349 524 2.8E-45 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 SUPERFAMILY SSF47323 363 527 2.24E-40 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS24230 fd51e074ba9ddfe6ae911e2d4b463468 532 Hamap MF_01228 Methionine--tRNA ligase [metG]. 6 514 46.66 T 06-07-2017 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 56 285 1.5E-62 T 06-07-2017 APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 SUPERFAMILY SSF51735 46 287 3.89E-84 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 Gene3D G3DSA:3.40.50.720 42 288 2.5E-87 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 4.4E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 4.4E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 4.4E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 185 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 134 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 250 270 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 233 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 214 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 48 65 6.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS01345 6dfc77b417fc979af5512d26e12de190 290 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 182 210 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 Pfam PF01266 FAD dependent oxidoreductase 5 361 1.4E-30 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 Gene3D G3DSA:3.50.50.60 2 81 1.3E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 Gene3D G3DSA:3.50.50.60 133 208 1.3E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 Gene3D G3DSA:3.50.50.60 327 384 1.3E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 SUPERFAMILY SSF51905 327 365 2.78E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18945 76a706e497b4d6d505f4fa2755534f6b 386 SUPERFAMILY SSF51905 3 209 2.78E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS16220 55262e5db9328e5c048afd01c88e5f01 171 Gene3D G3DSA:3.40.50.1820 48 138 3.5E-5 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 11 248 8.8E-99 T 06-07-2017 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 Gene3D G3DSA:3.30.950.10 127 258 1.3E-48 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 12 223 3.9E-48 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 Gene3D G3DSA:3.40.1010.10 11 126 4.8E-43 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 16 30 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 SUPERFAMILY SSF53790 8 249 7.07E-78 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS26755 1aceb7cb26d5821e0719096f9bb20ac3 269 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 91 124 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 APT55_RS22525 a60f0eb5f8e7d37ea2250276cb580677 523 SUPERFAMILY SSF102114 228 464 9.81E-29 T 06-07-2017 APT55_RS22525 a60f0eb5f8e7d37ea2250276cb580677 523 Gene3D G3DSA:3.80.30.20 236 436 2.8E-33 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS22525 a60f0eb5f8e7d37ea2250276cb580677 523 Pfam PF04055 Radical SAM superfamily 242 387 2.5E-17 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS22525 a60f0eb5f8e7d37ea2250276cb580677 523 SMART SM00729 235 449 9.0E-22 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS13450 7592907330eb8911850708b7bffd003a 85 SMART SM01094 13 71 4.1E-22 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS13450 7592907330eb8911850708b7bffd003a 85 Pfam PF01383 CpcD/allophycocyanin linker domain 13 70 5.7E-23 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS26115 727a5de5700223ff2e293896e701a36f 424 SUPERFAMILY SSF53756 76 403 5.76E-28 T 06-07-2017 APT55_RS26115 727a5de5700223ff2e293896e701a36f 424 Pfam PF00534 Glycosyl transferases group 1 227 385 1.6E-16 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS26115 727a5de5700223ff2e293896e701a36f 424 Gene3D G3DSA:3.40.50.2000 201 385 3.3E-5 T 06-07-2017 APT55_RS29780 dc3abb01068a48133d56f11aa27b1734 414 Pfam PF00589 Phage integrase family 154 330 4.6E-14 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS29780 dc3abb01068a48133d56f11aa27b1734 414 SUPERFAMILY SSF56349 50 329 5.3E-31 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS29780 dc3abb01068a48133d56f11aa27b1734 414 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 52 125 2.3E-8 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS29780 dc3abb01068a48133d56f11aa27b1734 414 Gene3D G3DSA:1.10.443.10 154 331 7.7E-28 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS29780 dc3abb01068a48133d56f11aa27b1734 414 Gene3D G3DSA:1.10.150.130 54 139 1.2E-9 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 1.1E-7 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 1.1E-7 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.1E-7 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 18 37 5.3E-11 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 5.3E-11 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 5.3E-11 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 5.3E-11 T 06-07-2017 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 Gene3D G3DSA:3.50.50.60 16 116 5.6E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 SUPERFAMILY SSF51905 17 356 1.97E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 342 2.1E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20315 8065af05b61cf478ee2eb51424de1e05 447 Gene3D G3DSA:3.50.50.60 117 348 9.8E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 180 207 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 SMART SM00421 163 220 1.7E-26 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 Gene3D G3DSA:1.10.10.10 172 226 4.0E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 166 220 1.3E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 Pfam PF00072 Response regulator receiver domain 12 128 7.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 1.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 1.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 1.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 SMART SM00448 10 128 4.2E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 SUPERFAMILY SSF52172 9 190 4.87E-25 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS15665 dc384a975494852b0eb5e5df9c4c076a 229 Gene3D G3DSA:3.40.50.2300 8 171 1.9E-30 T 06-07-2017 APT55_RS03895 ec35e53ff235f2f78f62641e89c75437 292 Gene3D G3DSA:3.90.550.10 7 282 6.5E-8 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03895 ec35e53ff235f2f78f62641e89c75437 292 SUPERFAMILY SSF53448 2 276 1.66E-21 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 Gene3D G3DSA:3.40.190.10 83 156 4.0E-15 T 06-07-2017 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 134 150 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 163 177 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 181 200 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 103 116 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 262 281 1.9E-13 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 Pfam PF13343 Bacterial extracellular solute-binding protein 85 328 3.0E-37 T 06-07-2017 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 Gene3D G3DSA:3.40.190.10 157 310 5.5E-44 T 06-07-2017 APT55_RS26490 de79a7e60627cab594a7024f145679c8 365 SUPERFAMILY SSF53850 42 361 1.14E-53 T 06-07-2017 APT55_RS09835 c9cd2d99144f1d2fb1a25624d015e60c 310 Gene3D G3DSA:3.90.260.10 178 249 2.4E-12 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS09835 c9cd2d99144f1d2fb1a25624d015e60c 310 SMART SM00460 175 246 4.0E-22 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS09835 c9cd2d99144f1d2fb1a25624d015e60c 310 Pfam PF01841 Transglutaminase-like superfamily 131 244 1.5E-21 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS09835 c9cd2d99144f1d2fb1a25624d015e60c 310 SUPERFAMILY SSF54001 93 273 1.18E-37 T 06-07-2017 APT55_RS09835 c9cd2d99144f1d2fb1a25624d015e60c 310 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 81 1.8E-13 T 06-07-2017 IPR013589 Bacterial transglutaminase-like, N-terminal APT55_RS12040 14cf7e48287e6219da757d0e85d14b27 240 Gene3D G3DSA:3.40.50.300 2 237 7.6E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12040 14cf7e48287e6219da757d0e85d14b27 240 Pfam PF00005 ABC transporter 21 164 4.4E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS12040 14cf7e48287e6219da757d0e85d14b27 240 SMART SM00382 28 217 3.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12040 14cf7e48287e6219da757d0e85d14b27 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS12040 14cf7e48287e6219da757d0e85d14b27 240 SUPERFAMILY SSF52540 4 229 9.32E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SUPERFAMILY SSF47384 83 140 5.1E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 463 671 2.7E-21 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SUPERFAMILY SSF52540 461 706 3.99E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Pfam PF00072 Response regulator receiver domain 188 297 1.3E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Pfam PF00512 His Kinase A (phospho-acceptor) domain 84 140 2.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Pfam PF00512 His Kinase A (phospho-acceptor) domain 8 72 5.8E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Gene3D G3DSA:1.10.287.130 90 138 2.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Gene3D G3DSA:1.10.287.130 7 69 5.1E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SMART SM00448 186 297 8.8E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SUPERFAMILY SSF52172 186 318 2.28E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Gene3D G3DSA:3.40.50.300 459 706 3.1E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SUPERFAMILY SSF47384 6 74 9.22E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SMART SM00388 79 143 6.5E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 SMART SM00388 6 74 8.2E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01895 a9fed4109ca824215e4f613357a4399a 708 Gene3D G3DSA:3.40.50.2300 184 309 2.2E-38 T 06-07-2017 APT55_RS11465 a4bd4699b962ccbd34fce3986feb4221 184 SUPERFAMILY SSF141571 14 178 9.81E-48 T 06-07-2017 APT55_RS11465 a4bd4699b962ccbd34fce3986feb4221 184 Pfam PF00805 Pentapeptide repeats (8 copies) 50 89 9.8E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS11465 a4bd4699b962ccbd34fce3986feb4221 184 Pfam PF00805 Pentapeptide repeats (8 copies) 16 49 8.6E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS11465 a4bd4699b962ccbd34fce3986feb4221 184 Pfam PF00805 Pentapeptide repeats (8 copies) 95 133 5.0E-16 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS11465 a4bd4699b962ccbd34fce3986feb4221 184 Pfam PF00805 Pentapeptide repeats (8 copies) 135 169 2.6E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 SMART SM00387 255 367 7.9E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 SUPERFAMILY SSF55874 202 365 1.31E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 Pfam PF00512 His Kinase A (phospho-acceptor) domain 147 211 4.2E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 345 2.8E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 364 2.8E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 306 2.8E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 2.8E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 SMART SM00388 146 212 4.1E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 258 365 5.7E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 SUPERFAMILY SSF47384 130 211 1.29E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 Gene3D G3DSA:1.10.287.130 142 198 1.7E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28170 7327d999905aed09a3ad1088f21e3fc9 368 Gene3D G3DSA:3.30.565.10 199 367 2.4E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 Gene3D G3DSA:3.40.50.300 35 229 4.5E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 37 212 2.3E-53 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 SUPERFAMILY SSF90002 257 345 4.18E-22 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 258 345 2.2E-21 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 SMART SM00833 257 345 3.7E-18 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 Gene3D G3DSA:3.30.1220.10 255 345 7.3E-23 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07320 c11fd1d7a64e7677c6c61b57b8050dd4 347 SUPERFAMILY SSF52540 35 231 7.67E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 SUPERFAMILY SSF54631 241 366 2.07E-13 T 06-07-2017 APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 Gene3D G3DSA:3.10.580.10 237 367 7.8E-15 T 06-07-2017 APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 SMART SM00116 317 365 0.012 T 06-07-2017 IPR000644 CBS domain APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 SMART SM00116 250 300 3.1 T 06-07-2017 IPR000644 CBS domain APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 Pfam PF00571 CBS domain 317 365 0.0023 T 06-07-2017 IPR000644 CBS domain APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 PIRSF PIRSF006404 1 373 5.4E-111 T 06-07-2017 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS APT55_RS10580 4bb7313761d02ac3c25977a092a74d3f 373 Pfam PF02163 Peptidase family M50 137 190 2.3E-8 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 533 3.1E-35 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 Pfam PF00672 HAMP domain 186 254 4.8E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 Gene3D G3DSA:1.10.287.950 287 501 5.5E-46 T 06-07-2017 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 SUPERFAMILY SSF58104 225 535 3.14E-57 T 06-07-2017 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 SMART SM00304 201 258 7.6E-7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS10015 cc7ece6937121130f45633960818eccd 535 SMART SM00283 273 534 1.6E-35 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Gene3D G3DSA:2.60.120.10 16 141 4.4E-15 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 631 642 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 SUPERFAMILY SSF51206 15 140 2.62E-16 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 SMART SM00100 15 132 5.6E-6 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 SUPERFAMILY SSF52540 163 390 2.23E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Gene3D G3DSA:1.10.8.60 321 392 2.6E-14 T 06-07-2017 APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Pfam PF00027 Cyclic nucleotide-binding domain 37 119 1.8E-8 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 SUPERFAMILY SSF54862 558 650 1.2E-6 T 06-07-2017 APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Gene3D G3DSA:3.40.50.300 162 308 3.2E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Pfam PF12801 4Fe-4S binding domain 454 495 1.0E-6 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Pfam PF12801 4Fe-4S binding domain 543 580 2.3E-6 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS08865 d2ef6a71659fde0a22f03430bf6fdde4 843 Pfam PF00158 Sigma-54 interaction domain 164 303 1.4E-13 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 ProSitePatterns PS01015 Ribosomal protein L19 signature. 88 103 - T 06-07-2017 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 PIRSF PIRSF002191 1 120 9.5E-48 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 Pfam PF01245 Ribosomal protein L19 6 115 3.7E-44 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 4 116 31.148 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 5 115 2.1E-43 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 SUPERFAMILY SSF50104 3 117 2.11E-44 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 PRINTS PR00061 Ribosomal protein L19 signature 90 115 3.0E-38 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 PRINTS PR00061 Ribosomal protein L19 signature 36 65 3.0E-38 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17515 8ee160dcc2d2a1306bce07c78e1d7336 121 PRINTS PR00061 Ribosomal protein L19 signature 6 35 3.0E-38 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 SUPERFAMILY SSF51905 5 207 2.83E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 328 2.6E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 SUPERFAMILY SSF51905 151 342 3.85E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 3.7E-7 T 06-07-2017 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.7E-7 T 06-07-2017 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 160 178 3.7E-7 T 06-07-2017 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 Gene3D G3DSA:3.50.50.60 105 336 3.9E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28305 22119909ac93a82aeed274ea844d7c66 475 Gene3D G3DSA:3.50.50.60 9 104 4.9E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05465 c9933c089dc5ed582fd7e2ffb35b7d4b 481 Pfam PF03781 Sulfatase-modifying factor enzyme 1 239 474 2.9E-59 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS05465 c9933c089dc5ed582fd7e2ffb35b7d4b 481 SUPERFAMILY SSF52980 31 132 2.04E-13 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS05465 c9933c089dc5ed582fd7e2ffb35b7d4b 481 SUPERFAMILY SSF56436 237 476 8.95E-79 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS05465 c9933c089dc5ed582fd7e2ffb35b7d4b 481 Gene3D G3DSA:3.40.1350.10 60 133 1.2E-7 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS05465 c9933c089dc5ed582fd7e2ffb35b7d4b 481 Gene3D G3DSA:3.90.1580.10 232 478 5.1E-76 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 467 56.105 T 06-07-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 Gene3D G3DSA:3.30.499.10 329 466 2.6E-58 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 Gene3D G3DSA:3.30.499.10 24 160 7.4E-22 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 Pfam PF00330 Aconitase family (aconitate hydratase) 8 458 1.3E-145 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 Gene3D G3DSA:3.40.1060.10 168 281 1.2E-38 T 06-07-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 SUPERFAMILY SSF53732 5 466 3.92E-156 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 120 133 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 399 412 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 196 209 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 210 223 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 83 96 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 109 117 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 134 149 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 343 354 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 PRINTS PR00415 Aconitase family signature 287 301 4.7E-41 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT55_RS21165 07cb7fa50c941f8fad1d0ee788ae41ac 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 5 466 2.7E-191 T 06-07-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 Gene3D G3DSA:2.40.50.100 93 125 1.4E-14 T 06-07-2017 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 Gene3D G3DSA:2.40.50.100 306 340 1.4E-14 T 06-07-2017 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 SUPERFAMILY SSF111369 92 244 6.41E-7 T 06-07-2017 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 Pfam PF13437 HlyD family secretion protein 309 416 4.8E-19 T 06-07-2017 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 378 401 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 354 378 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 61 84 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 436 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 103 123 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 342 2.3E-32 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 62 448 7.5E-68 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 APT55_RS18745 48a300f59c3d81669b30d3e6bae5e1a1 457 Pfam PF13533 Biotin-lipoyl like 97 137 2.6E-7 T 06-07-2017 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 52 60 4.4E-15 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 143 159 4.4E-15 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 95 110 4.4E-15 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 Pfam PF01252 Signal peptidase (SPase) II 11 161 1.3E-32 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 ProSitePatterns PS00855 Signal peptidases II signature. 98 110 - T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 TIGRFAM TIGR00077 lspA: signal peptidase II 4 159 7.6E-29 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS07880 2ab067eeec66fc8f4553b76ac2ceb93e 172 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 168 14.917 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 APT55_RS10640 f7f4b231387e780b07139bc338701606 274 Pfam PF01061 ABC-2 type transporter 28 233 6.9E-24 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS13820 17b97f128ca4f13b3ac97498e9d95b5a 144 Gene3D G3DSA:3.40.50.300 2 134 8.9E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13820 17b97f128ca4f13b3ac97498e9d95b5a 144 SUPERFAMILY SSF52540 2 131 7.97E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13820 17b97f128ca4f13b3ac97498e9d95b5a 144 Pfam PF13361 UvrD-like helicase C-terminal domain 63 128 1.9E-17 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT55_RS21080 4265cd87258d15649d109a29d2ee26d3 616 Pfam PF00395 S-layer homology domain 136 178 2.4E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS21080 4265cd87258d15649d109a29d2ee26d3 616 Pfam PF04966 Carbohydrate-selective porin, OprB family 202 616 4.8E-84 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 06-07-2017 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 SUPERFAMILY SSF55021 349 422 4.23E-24 T 06-07-2017 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 419 4.3E-127 T 06-07-2017 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Pfam PF01842 ACT domain 456 516 5.0E-11 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Pfam PF01842 ACT domain 275 333 8.8E-9 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 SUPERFAMILY SSF55021 260 332 2.55E-12 T 06-07-2017 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Pfam PF13840 ACT domain 353 415 5.2E-15 T 06-07-2017 IPR027795 GATS-like ACT domain APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Pfam PF13840 ACT domain 527 589 3.4E-12 T 06-07-2017 IPR027795 GATS-like ACT domain APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 419 8.6E-119 T 06-07-2017 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 SUPERFAMILY SSF55021 519 596 1.88E-24 T 06-07-2017 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 SUPERFAMILY SSF55021 438 516 1.37E-13 T 06-07-2017 APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 SUPERFAMILY SSF53633 4 243 8.12E-75 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Gene3D G3DSA:3.40.1160.10 1 244 4.6E-74 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS25895 453baa3bbc3e3e461f6f8a976d263fee 604 Pfam PF00696 Amino acid kinase family 3 232 4.1E-56 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase APT55_RS13260 02fdd78b5975421ba1de55c7ed39083e 145 SUPERFAMILY SSF51283 4 145 1.83E-49 T 06-07-2017 IPR029054 dUTPase-like APT55_RS13260 02fdd78b5975421ba1de55c7ed39083e 145 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 145 30.658 T 06-07-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 APT55_RS13260 02fdd78b5975421ba1de55c7ed39083e 145 TIGRFAM TIGR00576 dut: dUTP diphosphatase 6 144 2.4E-53 T 06-07-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 APT55_RS13260 02fdd78b5975421ba1de55c7ed39083e 145 Gene3D G3DSA:2.70.40.10 1 145 2.8E-57 T 06-07-2017 IPR029054 dUTPase-like APT55_RS13260 02fdd78b5975421ba1de55c7ed39083e 145 Pfam PF00692 dUTPase 14 144 3.0E-30 T 06-07-2017 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 Gene3D G3DSA:3.50.50.60 150 247 1.8E-22 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 SUPERFAMILY SSF51905 14 317 2.15E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 121 129 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 17 39 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 48 63 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 161 185 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 146 158 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 278 296 4.3E-17 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 303 2.6E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 Gene3D G3DSA:3.50.50.60 16 149 3.9E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 18 37 2.4E-11 T 06-07-2017 APT55_RS04400 5c65dbede2ea37b8ed5eead9d4b83c3b 338 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 290 2.4E-11 T 06-07-2017 APT55_RS16305 ce87838b2db7f0ec7cbd7899e30ca74a 59 Gene3D G3DSA:1.20.1620.10 25 54 6.1E-8 T 06-07-2017 APT55_RS16305 ce87838b2db7f0ec7cbd7899e30ca74a 59 Pfam PF00504 Chlorophyll A-B binding protein 11 50 5.1E-7 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS16305 ce87838b2db7f0ec7cbd7899e30ca74a 59 SUPERFAMILY SSF103511 10 58 4.84E-15 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1160 1189 2.3E-6 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1259 1288 2.3E-6 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00065 893 1048 1.7E-27 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00065 127 278 1.1E-21 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00065 499 674 1.1E-31 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00065 299 471 4.6E-27 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00065 710 865 8.8E-33 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF58104 1088 1394 1.1E-63 T 06-07-2017 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SMART SM00283 1132 1393 9.8E-71 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 1190 1392 1.5E-45 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF55781 279 469 9.16E-56 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF01590 GAF domain 711 855 4.5E-19 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF01590 GAF domain 299 461 1.4E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF01590 GAF domain 499 664 5.8E-18 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF01590 GAF domain 127 266 1.5E-16 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Pfam PF01590 GAF domain 893 1038 7.1E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:3.30.450.40 699 858 1.0E-45 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:3.30.450.40 284 464 6.0E-48 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:3.30.450.40 883 1040 4.5E-42 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:3.30.450.40 483 667 5.0E-47 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:3.30.450.40 113 270 3.4E-28 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF55781 480 671 1.24E-56 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF55781 865 1046 4.91E-50 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF55781 700 862 4.58E-54 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 SUPERFAMILY SSF55781 111 272 1.96E-42 T 06-07-2017 IPR029016 GAF domain-like APT55_RS16980 a57ab7e230f7ac58aeaa712b17ad07f8 1395 Gene3D G3DSA:1.10.287.950 1147 1364 1.0E-48 T 06-07-2017 APT55_RS22505 6b3cb65c3f9f0cb87e74ba527e73bd24 416 Pfam PF01368 DHH family 72 217 9.9E-7 T 06-07-2017 IPR001667 DDH domain APT55_RS22505 6b3cb65c3f9f0cb87e74ba527e73bd24 416 Gene3D G3DSA:3.90.1640.10 67 252 9.1E-23 T 06-07-2017 APT55_RS22505 6b3cb65c3f9f0cb87e74ba527e73bd24 416 SUPERFAMILY SSF64182 64 372 2.35E-46 T 06-07-2017 APT55_RS26985 622914b595056b8234bcbd01909321fe 422 Gene3D G3DSA:3.40.640.10 68 273 7.1E-36 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS26985 622914b595056b8234bcbd01909321fe 422 Pfam PF00155 Aminotransferase class I and II 65 412 8.8E-27 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS26985 622914b595056b8234bcbd01909321fe 422 Gene3D G3DSA:3.90.1150.10 274 417 1.2E-19 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS26985 622914b595056b8234bcbd01909321fe 422 SUPERFAMILY SSF53383 26 418 7.8E-64 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS10340 585c5ebcad3ee5ae12c78f2a08b45b93 409 PIRSF PIRSF031773 1 409 5.6E-151 T 06-07-2017 IPR005891 DevC protein APT55_RS10340 585c5ebcad3ee5ae12c78f2a08b45b93 409 TIGRFAM TIGR01185 devC: ABC exporter transmembrane subunit, DevC protein 4 409 5.1E-156 T 06-07-2017 IPR005891 DevC protein APT55_RS10340 585c5ebcad3ee5ae12c78f2a08b45b93 409 Pfam PF02687 FtsX-like permease family 295 401 4.7E-15 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 319 643 1.6E-129 T 06-07-2017 IPR032696 Squalene cyclase, C-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 7 643 4.5E-216 T 06-07-2017 IPR018333 Squalene cyclase GO:0016866 Reactome: R-HSA-191273|Reactome: R-HSA-2426168 APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 SUPERFAMILY SSF48239 311 643 4.39E-92 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 SUPERFAMILY SSF48239 31 314 5.76E-69 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 TIGRFAM TIGR01507 hopene_cyclase: squalene-hopene cyclase 5 646 1.9E-267 T 06-07-2017 IPR006400 Squalene hopene cyclase GO:0016866|GO:0019746 KEGG: 00030+4.2.1.12|KEGG: 00909+4.2.1.129+5.4.99.17|MetaCyc: PWY-6098|MetaCyc: PWY-7072 APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 Gene3D G3DSA:1.50.10.20 30 308 3.3E-59 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 ProSitePatterns PS01074 Terpene synthases signature. 497 511 - T 06-07-2017 IPR002365 Terpene synthase, conserved site GO:0016866 Reactome: R-HSA-191273|Reactome: R-HSA-2426168 APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 Gene3D G3DSA:1.50.10.20 309 647 2.4E-102 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS25940 129c6dd87d6c9d917a5d21ccab498976 673 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 8 310 6.4E-110 T 06-07-2017 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 SUPERFAMILY SSF82861 40 122 1.27E-11 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 SUPERFAMILY SSF50182 124 189 3.07E-19 T 06-07-2017 IPR010920 LSM domain APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 Pfam PF00924 Mechanosensitive ion channel 81 281 2.1E-50 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 Gene3D G3DSA:2.30.30.60 139 188 1.1E-18 T 06-07-2017 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 Pfam PF00027 Cyclic nucleotide-binding domain 353 437 3.8E-20 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 Gene3D G3DSA:2.60.120.10 325 452 3.9E-33 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 Gene3D G3DSA:3.30.70.100 194 280 7.0E-11 T 06-07-2017 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 SUPERFAMILY SSF51206 325 451 9.69E-32 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 SUPERFAMILY SSF82689 194 281 2.22E-9 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 399 416 - T 06-07-2017 IPR018488 Cyclic nucleotide-binding, conserved site APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 SMART SM00100 334 449 1.2E-21 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 PRINTS PR00103 cAMP-dependent protein kinase signature 397 406 2.3E-5 T 06-07-2017 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 PRINTS PR00103 cAMP-dependent protein kinase signature 370 384 2.3E-5 T 06-07-2017 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 PRINTS PR00103 cAMP-dependent protein kinase signature 409 420 2.3E-5 T 06-07-2017 APT55_RS20480 6f74e9615a907141408de056ec3fb078 485 PRINTS PR00103 cAMP-dependent protein kinase signature 355 369 2.3E-5 T 06-07-2017 APT55_RS15580 0239ca64ae70b760ce10013998beef4f 729 Gene3D G3DSA:2.60.450.10 116 222 1.1E-17 T 06-07-2017 APT55_RS15580 0239ca64ae70b760ce10013998beef4f 729 Pfam PF12600 Protein of unknown function (DUF3769) 267 703 4.1E-186 T 06-07-2017 IPR022244 Protein of unknown function DUF3769 APT55_RS27220 3cab6ade9620c71d1ee30cf402beae76 225 Pfam PF05685 Putative restriction endonuclease 20 191 2.4E-26 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27220 3cab6ade9620c71d1ee30cf402beae76 225 SUPERFAMILY SSF52980 10 194 8.58E-25 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS27220 3cab6ade9620c71d1ee30cf402beae76 225 Gene3D G3DSA:3.90.1570.10 12 194 3.0E-16 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 PIRSF PIRSF009283 1 363 7.4E-131 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 Gene3D G3DSA:3.10.180.10 169 363 2.3E-81 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 SUPERFAMILY SSF54593 4 350 4.93E-85 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 167 317 2.1E-15 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 10 363 7.8E-126 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 Gene3D G3DSA:3.10.180.10 3 168 9.9E-44 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS03515 a014cc6a24c8d38e8de4a92ff1f9bcc5 363 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 8 141 2.2E-6 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 Pfam PF13533 Biotin-lipoyl like 72 120 3.7E-14 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 SUPERFAMILY SSF111369 237 407 8.5E-11 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 Pfam PF13437 HlyD family secretion protein 287 397 1.0E-10 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 SUPERFAMILY SSF111369 60 154 6.15E-14 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 Gene3D G3DSA:2.40.50.100 284 311 8.6E-17 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 Gene3D G3DSA:2.40.50.100 72 105 8.6E-17 T 06-07-2017 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 339 363 4.1E-8 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 83 103 4.1E-8 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS07935 5d6a950b3b53b46aa0d2544a818bf77b 501 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 243 467 5.3E-34 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 368 1.4E-88 T 06-07-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 390 94.5 T 06-07-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 SUPERFAMILY SSF52540 1 366 2.3E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 06-07-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 ProSitePatterns PS00618 RecF protein signature 2. 316 334 - T 06-07-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 350 1.5E-15 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 Gene3D G3DSA:3.40.50.300 1 171 4.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23345 d419df30d5199cf248a65c8b6cc914e9 390 Gene3D G3DSA:3.40.50.300 248 352 4.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 PIRSF PIRSF000171 1 568 6.6E-48 T 06-07-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 SUPERFAMILY SSF56425 227 349 5.23E-41 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Gene3D G3DSA:1.20.58.100 426 530 2.4E-36 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Gene3D G3DSA:4.10.80.40 531 572 4.9E-14 T 06-07-2017 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Pfam PF02910 Fumarate reductase flavoprotein C-term 450 575 1.6E-40 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 5 575 1.1E-252 T 06-07-2017 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 SUPERFAMILY SSF46977 442 575 1.3E-44 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 SUPERFAMILY SSF51905 353 431 1.83E-72 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 SUPERFAMILY SSF51905 2 250 1.83E-72 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 41 50 - T 06-07-2017 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Gene3D G3DSA:3.50.50.60 3 233 7.0E-112 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Gene3D G3DSA:3.50.50.60 345 417 7.0E-112 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Gene3D G3DSA:3.90.700.10 234 344 4.8E-38 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09430 5644a4347d55417a68a60fb0d811fae7 575 Pfam PF00890 FAD binding domain 5 395 2.7E-114 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 SUPERFAMILY SSF51366 13 223 8.57E-51 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 10 227 32.679 T 06-07-2017 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 34 227 3.9E-47 T 06-07-2017 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 Pfam PF00583 Acetyltransferase (GNAT) family 299 364 8.4E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 SUPERFAMILY SSF55729 252 385 1.28E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 Gene3D G3DSA:3.40.630.30 287 385 3.8E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11035 efcf0b9430091b331dcf6ded76df0c74 385 Gene3D G3DSA:3.20.20.70 6 228 7.1E-75 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PRINTS PR00990 Ribokinase signature 34 53 1.1E-32 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PRINTS PR00990 Ribokinase signature 173 188 1.1E-32 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PRINTS PR00990 Ribokinase signature 106 119 1.1E-32 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PRINTS PR00990 Ribokinase signature 217 228 1.1E-32 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PRINTS PR00990 Ribokinase signature 7 28 1.1E-32 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 Hamap MF_01987 Ribokinase [rbsK]. 3 301 24.513 T 06-07-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 SUPERFAMILY SSF53613 5 302 5.3E-83 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 296 2.3E-100 T 06-07-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 PIRSF PIRSF000535 10 306 4.5E-30 T 06-07-2017 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 Gene3D G3DSA:3.40.1190.20 4 305 5.4E-94 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 Pfam PF00294 pfkB family carbohydrate kinase 5 293 2.2E-69 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB APT55_RS24480 49235d5f7e7af86bf604ce3b1c40f3e0 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT55_RS21705 080ba84717783b63048a500502fecbae 431 SMART SM01192 144 428 1.3E-213 T 06-07-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 SUPERFAMILY SSF51604 146 422 3.96E-126 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS21705 080ba84717783b63048a500502fecbae 431 Gene3D G3DSA:3.20.20.120 133 423 4.6E-131 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS21705 080ba84717783b63048a500502fecbae 431 Pfam PF03952 Enolase, N-terminal domain 9 139 1.2E-56 T 06-07-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 SMART SM01193 9 139 6.4E-89 T 06-07-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 145 423 1.6E-127 T 06-07-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PIRSF PIRSF001400 5 426 7.5E-188 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 9 423 1.0E-202 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 SUPERFAMILY SSF54826 8 143 8.1E-55 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 Hamap MF_00318 Enolase [eno]. 7 414 44.67 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 112 128 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 42 56 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 166 179 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 337 351 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 366 383 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 PRINTS PR00148 Enolase signature 314 325 2.1E-46 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21705 080ba84717783b63048a500502fecbae 431 ProSitePatterns PS00164 Enolase signature. 337 350 - T 06-07-2017 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS21705 080ba84717783b63048a500502fecbae 431 Gene3D G3DSA:3.30.390.10 9 131 3.0E-52 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS14890 2b4b8621e85f63e538485127135e5b40 141 SUPERFAMILY SSF49879 6 111 4.21E-26 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS14890 2b4b8621e85f63e538485127135e5b40 141 Gene3D G3DSA:2.60.200.20 4 105 1.7E-20 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS14890 2b4b8621e85f63e538485127135e5b40 141 Pfam PF00498 FHA domain 29 102 2.8E-15 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS14890 2b4b8621e85f63e538485127135e5b40 141 SMART SM00240 28 88 4.0E-11 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 Gene3D G3DSA:1.10.560.10 6 195 1.1E-39 T 06-07-2017 IPR027413 GroEL-like equatorial domain APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 SUPERFAMILY SSF52029 184 374 3.14E-80 T 06-07-2017 IPR027409 GroEL-like apical domain APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 525 1.1E-108 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 Hamap MF_00600 60 kDa chaperonin [groL]. 1 544 41.924 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 PRINTS PR00298 60kDa chaperonin signature 267 290 4.9E-73 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 PRINTS PR00298 60kDa chaperonin signature 396 417 4.9E-73 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 PRINTS PR00298 60kDa chaperonin signature 26 52 4.9E-73 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 PRINTS PR00298 60kDa chaperonin signature 82 109 4.9E-73 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 PRINTS PR00298 60kDa chaperonin signature 348 373 4.9E-73 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 Gene3D G3DSA:3.50.7.10 196 368 1.6E-90 T 06-07-2017 IPR027409 GroEL-like apical domain APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 526 5.0E-253 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 SUPERFAMILY SSF48592 6 133 2.29E-74 T 06-07-2017 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 SUPERFAMILY SSF48592 404 521 2.29E-74 T 06-07-2017 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 SUPERFAMILY SSF54849 136 203 5.04E-23 T 06-07-2017 APT55_RS22020 0564ababc22fdccbf9170c1a365beb90 546 Gene3D G3DSA:1.10.560.10 369 518 7.3E-39 T 06-07-2017 IPR027413 GroEL-like equatorial domain APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 SUPERFAMILY SSF54060 48 283 1.35E-66 T 06-07-2017 APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 Gene3D G3DSA:3.40.570.10 71 283 9.5E-61 T 06-07-2017 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 SMART SM00477 72 274 6.0E-51 T 06-07-2017 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 Pfam PF01223 DNA/RNA non-specific endonuclease 71 273 3.3E-51 T 06-07-2017 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 131 139 - T 06-07-2017 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 APT55_RS17910 ebfc934349d138a73fb438d32c792cfe 286 SMART SM00892 71 274 1.6E-51 T 06-07-2017 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 Gene3D G3DSA:2.130.10.10 122 211 3.5E-6 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 Gene3D G3DSA:3.90.260.10 424 490 1.9E-4 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 SUPERFAMILY SSF54001 362 508 8.55E-24 T 06-07-2017 APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 SUPERFAMILY SSF63825 24 208 1.15E-12 T 06-07-2017 APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 Pfam PF01841 Transglutaminase-like superfamily 379 486 3.7E-19 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS00485 9b562dff2ffa23ba718336d47ce07f4f 556 SMART SM00460 419 489 8.2E-22 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Pfam PF13432 Tetratricopeptide repeat 225 277 2.4E-4 T 06-07-2017 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Pfam PF13432 Tetratricopeptide repeat 117 172 8.6E-7 T 06-07-2017 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 44 77 0.014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 78 111 2.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 112 145 8.8E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 214 247 3.0E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 248 281 64.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 146 179 0.048 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SMART SM00028 180 213 1.6E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Gene3D G3DSA:1.25.40.10 163 277 4.2E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Gene3D G3DSA:1.25.40.10 48 162 1.1E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 SUPERFAMILY SSF48452 34 276 3.03E-43 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Pfam PF13414 TPR repeat 192 223 5.9E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11895 7d2e76fb3a7db5b434259e3d39edfa2d 308 Pfam PF13414 TPR repeat 55 90 1.2E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17470 a677d68ecd867d2fb2f461d0b82ba45f 240 Gene3D G3DSA:1.10.10.10 145 202 1.6E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS17470 a677d68ecd867d2fb2f461d0b82ba45f 240 SUPERFAMILY SSF46785 140 194 6.23E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20785 654b3884f0b46318912c4081eab28e21 308 SUPERFAMILY SSF160964 25 55 9.55E-5 T 06-07-2017 APT55_RS20785 654b3884f0b46318912c4081eab28e21 308 Gene3D G3DSA:1.20.58.370 23 54 6.4E-6 T 06-07-2017 APT55_RS20785 654b3884f0b46318912c4081eab28e21 308 Gene3D G3DSA:1.10.3720.10 74 300 6.6E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20785 654b3884f0b46318912c4081eab28e21 308 SUPERFAMILY SSF161098 68 292 7.59E-65 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20785 654b3884f0b46318912c4081eab28e21 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 297 1.3E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS28840 1d0f1cd64bcee96a6cff18f565752fee 419 Pfam PF08495 FIST N domain 41 232 5.9E-33 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS28840 1d0f1cd64bcee96a6cff18f565752fee 419 Pfam PF10442 FIST C domain 253 398 1.1E-32 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS28840 1d0f1cd64bcee96a6cff18f565752fee 419 SMART SM00897 39 237 1.4E-37 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS28840 1d0f1cd64bcee96a6cff18f565752fee 419 SMART SM01204 252 399 6.2E-36 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS28840 1d0f1cd64bcee96a6cff18f565752fee 419 PIRSF PIRSF018953 1 419 8.7E-168 T 06-07-2017 IPR016741 Uncharacterised conserved protein UCP018953 APT55_RS23330 0b2ed564259a07007a4f72b6228b5d1f 138 Pfam PF01850 PIN domain 5 119 4.4E-8 T 06-07-2017 IPR002716 PIN domain APT55_RS23330 0b2ed564259a07007a4f72b6228b5d1f 138 Gene3D G3DSA:3.40.50.1010 2 133 4.0E-32 T 06-07-2017 IPR029060 PIN domain-like APT55_RS23330 0b2ed564259a07007a4f72b6228b5d1f 138 SUPERFAMILY SSF88723 4 131 4.49E-27 T 06-07-2017 IPR029060 PIN domain-like APT55_RS20890 274ef4553f912d5529101e82522f2044 264 Pfam PF01975 Survival protein SurE 4 190 9.6E-62 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20890 274ef4553f912d5529101e82522f2044 264 Gene3D G3DSA:3.40.1210.10 1 260 7.5E-91 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20890 274ef4553f912d5529101e82522f2044 264 SUPERFAMILY SSF64167 1 259 2.75E-83 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20890 274ef4553f912d5529101e82522f2044 264 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 263 39.88 T 06-07-2017 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20890 274ef4553f912d5529101e82522f2044 264 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 246 3.1E-81 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Gene3D G3DSA:3.40.1110.10 324 541 7.0E-61 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SMART SM00831 13 87 3.0E-27 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF81660 341 538 1.37E-53 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 669 694 1.7E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 637 653 1.7E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 492 510 1.7E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 1.7E-18 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 637 656 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 334 348 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 172 186 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 545 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 566 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 673 3.5E-43 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 605 725 1.0E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 226 356 1.2E-28 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 93 190 7.6E-21 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 439 580 6.5E-19 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF81653 125 233 1.7E-30 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Pfam PF00689 Cation transporting ATPase, C-terminus 722 898 1.6E-31 T 06-07-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF81665 235 328 1.15E-108 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF81665 17 125 1.15E-108 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF81665 687 897 1.15E-108 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Pfam PF13246 Cation transport ATPase (P-type) 396 481 3.0E-19 T 06-07-2017 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Pfam PF00122 E1-E2 ATPase 92 325 4.8E-68 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Gene3D G3DSA:1.20.1110.10 67 119 3.5E-98 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Gene3D G3DSA:1.20.1110.10 606 893 3.5E-98 T 06-07-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Gene3D G3DSA:2.70.150.10 24 66 1.5E-44 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Gene3D G3DSA:2.70.150.10 120 234 1.5E-44 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 336 342 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 Pfam PF00690 Cation transporter/ATPase, N-terminus 16 81 7.8E-19 T 06-07-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF56784 489 735 2.5E-60 T 06-07-2017 IPR023214 HAD-like domain APT55_RS14275 84d9087e41e4bb9ffa88a4ef814e3ada 904 SUPERFAMILY SSF56784 332 352 2.5E-60 T 06-07-2017 IPR023214 HAD-like domain APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 Pfam PF13431 Tetratricopeptide repeat 107 137 8.9E-5 T 06-07-2017 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 Pfam PF07719 Tetratricopeptide repeat 223 252 3.5E-6 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SUPERFAMILY SSF48452 83 251 3.54E-35 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SMART SM00028 117 150 0.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SMART SM00028 222 255 0.0021 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SMART SM00028 188 221 34.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SMART SM00028 151 185 0.61 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 SMART SM00028 83 116 2.9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 Gene3D G3DSA:1.25.40.10 187 268 5.4E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS03750 3261aa8e885b91ed74d86d9a56860474 295 Gene3D G3DSA:1.25.40.10 74 180 4.3E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS15495 cc81f07f95cb31a343b4615918434b5b 78 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 14 77 2.0E-29 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APT55_RS15495 cc81f07f95cb31a343b4615918434b5b 78 SUPERFAMILY SSF117916 7 77 4.8E-26 T 06-07-2017 APT55_RS15495 cc81f07f95cb31a343b4615918434b5b 78 Pfam PF01106 NifU-like domain 10 75 4.7E-29 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APT55_RS28230 8a58889865a7cbe0efef398505e12af0 189 Pfam PF02685 Glucokinase 18 171 7.3E-50 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 APT55_RS28230 8a58889865a7cbe0efef398505e12af0 189 Gene3D G3DSA:3.40.367.20 18 156 1.3E-43 T 06-07-2017 APT55_RS28230 8a58889865a7cbe0efef398505e12af0 189 SUPERFAMILY SSF53067 18 172 5.44E-20 T 06-07-2017 APT55_RS07170 f5b52606dbf037e30b46906cdc472675 413 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 265 367 6.0E-6 T 06-07-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 APT55_RS07170 f5b52606dbf037e30b46906cdc472675 413 SUPERFAMILY SSF53756 170 372 1.43E-14 T 06-07-2017 APT55_RS07170 f5b52606dbf037e30b46906cdc472675 413 Gene3D G3DSA:3.40.50.2000 202 372 5.4E-21 T 06-07-2017 APT55_RS07170 f5b52606dbf037e30b46906cdc472675 413 PIRSF PIRSF017085 7 411 3.3E-147 T 06-07-2017 IPR016683 Glycosyl transferase, family 28, RedA, predicted APT55_RS17785 f15ce95c810743050bd6fa80433b168a 571 Gene3D G3DSA:3.10.20.310 78 155 1.1E-22 T 06-07-2017 APT55_RS17785 f15ce95c810743050bd6fa80433b168a 571 Gene3D G3DSA:2.40.160.50 191 568 2.2E-66 T 06-07-2017 APT55_RS17785 f15ce95c810743050bd6fa80433b168a 571 Pfam PF01103 Surface antigen 258 565 1.3E-13 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 APT55_RS17785 f15ce95c810743050bd6fa80433b168a 571 Pfam PF08479 POTRA domain, ShlB-type 81 155 3.0E-22 T 06-07-2017 IPR013686 Polypeptide-transport-associated, ShlB-type APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 214 230 - T 06-07-2017 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 10 425 8.1E-202 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 SUPERFAMILY SSF52283 354 425 8.5E-95 T 06-07-2017 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 SUPERFAMILY SSF52283 8 191 8.5E-95 T 06-07-2017 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 PIRSF PIRSF001109 2 425 2.8E-187 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 5 425 48.428 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 SUPERFAMILY SSF51735 192 354 1.04E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Gene3D G3DSA:3.40.50.720 194 352 5.1E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 SMART SM00996 9 424 1.2E-147 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 146 421 9.8E-31 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 9 144 4.9E-32 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Gene3D G3DSA:3.40.50.1480 9 193 4.8E-92 T 06-07-2017 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Gene3D G3DSA:3.40.50.1480 354 424 4.8E-92 T 06-07-2017 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 81 95 - T 06-07-2017 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 192 352 9.5E-59 T 06-07-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS26375 031af4c90e36b888aadea0a6c7726430 425 SMART SM00997 192 353 1.2E-107 T 06-07-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT55_RS11800 adde403602242a3f7450e33c4adda159 357 Gene3D G3DSA:3.40.50.150 161 355 7.2E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11800 adde403602242a3f7450e33c4adda159 357 Gene3D G3DSA:1.10.10.10 25 81 2.3E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11800 adde403602242a3f7450e33c4adda159 357 SUPERFAMILY SSF46785 18 82 5.69E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11800 adde403602242a3f7450e33c4adda159 357 Pfam PF13847 Methyltransferase domain 173 334 4.3E-27 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS11800 adde403602242a3f7450e33c4adda159 357 SUPERFAMILY SSF53335 161 352 1.98E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18535 a785190ec7c2d83dcbe890758ddd6bf2 484 Pfam PF13641 Glycosyltransferase like family 2 111 338 1.4E-22 T 06-07-2017 APT55_RS18535 a785190ec7c2d83dcbe890758ddd6bf2 484 Gene3D G3DSA:3.90.550.10 111 354 1.2E-20 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS18535 a785190ec7c2d83dcbe890758ddd6bf2 484 SUPERFAMILY SSF53448 97 376 4.69E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 SUPERFAMILY SSF56519 58 249 1.1E-41 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 SUPERFAMILY SSF56601 250 584 4.95E-89 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 233 1.1E-37 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 Gene3D G3DSA:3.40.710.10 249 584 4.8E-101 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 22 581 8.6E-167 T 06-07-2017 IPR017790 Penicillin-binding protein 2 GO:0016020 APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 Gene3D G3DSA:3.90.1310.10 134 248 4.1E-27 T 06-07-2017 APT55_RS21605 9e9849cbe04f6a397f01957f5c9476f6 589 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 578 2.7E-63 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 55 250 1.1E-81 T 06-07-2017 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 36 251 7.7E-52 T 06-07-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 PIRSF PIRSF000857 2 256 1.0E-79 T 06-07-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 226 1.9E-48 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 Gene3D G3DSA:3.40.50.620 20 222 2.9E-55 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS24635 d0e0f9d07a55dca42605490fce4dbed2 258 SUPERFAMILY SSF52402 22 214 2.78E-50 T 06-07-2017 APT55_RS19095 43677a17e1d458e6c128d5ab2a3d26d8 97 Pfam PF10052 Protein of unknown function (DUF2288) 3 94 7.6E-32 T 06-07-2017 IPR018741 Protein of unknown function DUF2288 APT55_RS30140 08ee22d357e91bf01c18264f8d00c9e4 355 Gene3D G3DSA:3.40.50.300 114 288 2.9E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30140 08ee22d357e91bf01c18264f8d00c9e4 355 SUPERFAMILY SSF52540 111 348 2.64E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30140 08ee22d357e91bf01c18264f8d00c9e4 355 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 153 279 1.4E-31 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS30140 08ee22d357e91bf01c18264f8d00c9e4 355 SMART SM00382 149 282 6.0E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS30140 08ee22d357e91bf01c18264f8d00c9e4 355 Gene3D G3DSA:1.10.8.60 289 351 1.7E-4 T 06-07-2017 APT55_RS29185 7f137f69cb92c0842137a66b405cf05d 137 Gene3D G3DSA:3.30.565.10 6 133 2.1E-10 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29185 7f137f69cb92c0842137a66b405cf05d 137 SUPERFAMILY SSF55874 5 132 6.02E-10 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15880 ca61b1eb2094298da26a640735ca9cc1 97 SUPERFAMILY SSF46785 12 56 8.16E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05435 2aa6203a34e626f0ca360f932a53288b 154 SUPERFAMILY SSF55729 9 148 7.62E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS05435 2aa6203a34e626f0ca360f932a53288b 154 Pfam PF00583 Acetyltransferase (GNAT) family 63 141 8.2E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS05435 2aa6203a34e626f0ca360f932a53288b 154 Gene3D G3DSA:3.40.630.30 11 140 3.3E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS05110 1311c0e10616d13986463822ef1beb22 122 Gene3D G3DSA:2.60.40.10 58 114 4.5E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS05110 1311c0e10616d13986463822ef1beb22 122 Pfam PF00041 Fibronectin type III domain 54 104 8.1E-6 T 06-07-2017 IPR003961 Fibronectin type III GO:0005515 APT55_RS05110 1311c0e10616d13986463822ef1beb22 122 SUPERFAMILY SSF49265 54 116 1.31E-7 T 06-07-2017 IPR003961 Fibronectin type III GO:0005515 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Gene3D G3DSA:2.130.10.120 280 342 1.7E-4 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Pfam PF00326 Prolyl oligopeptidase family 418 625 4.0E-47 T 06-07-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 SUPERFAMILY SSF82171 31 352 2.16E-20 T 06-07-2017 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Pfam PF07676 WD40-like Beta Propeller Repeat 225 241 0.014 T 06-07-2017 IPR011659 WD40-like Beta Propeller APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Gene3D G3DSA:2.120.10.60 31 92 3.3E-16 T 06-07-2017 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Gene3D G3DSA:2.120.10.60 141 261 3.3E-16 T 06-07-2017 APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 Gene3D G3DSA:3.40.50.1820 343 622 5.7E-74 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26240 209567fb1100164a72c7ac7d9d6ce956 640 SUPERFAMILY SSF53474 368 624 1.92E-64 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS15405 9bc3d1203e2855ee72b2e6a815cfb695 395 SUPERFAMILY SSF53756 17 385 6.63E-39 T 06-07-2017 APT55_RS15405 9bc3d1203e2855ee72b2e6a815cfb695 395 Pfam PF00534 Glycosyl transferases group 1 198 360 1.3E-14 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15405 9bc3d1203e2855ee72b2e6a815cfb695 395 Gene3D G3DSA:3.40.50.2000 168 367 9.6E-8 T 06-07-2017 APT55_RS15405 9bc3d1203e2855ee72b2e6a815cfb695 395 Pfam PF13439 Glycosyltransferase Family 4 17 176 2.5E-7 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Pfam PF07724 AAA domain (Cdc48 subfamily) 531 707 2.8E-53 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 319 5.2E-13 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 298 310 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SMART SM00382 532 714 1.4E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SMART SM00382 203 347 3.4E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 713 791 1.4E-21 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:1.10.8.60 724 803 1.7E-27 T 06-07-2017 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:3.40.50.300 166 346 1.2E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SUPERFAMILY SSF52540 166 417 1.42E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:3.40.50.300 485 658 6.7E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:3.40.50.300 696 723 6.7E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:1.10.1780.10 1 140 2.8E-39 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SMART SM01086 713 802 2.4E-27 T 06-07-2017 IPR019489 Clp ATPase, C-terminal APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 566 584 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 610 628 1.7E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 581 599 1.7E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 643 657 1.7E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 536 554 1.7E-41 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Gene3D G3DSA:1.10.8.60 347 429 1.5E-31 T 06-07-2017 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 91 140 1.4E-9 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 2.3E-14 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SUPERFAMILY SSF81923 3 140 3.63E-26 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS01280 16f74d3a1a6f4ea22c0e63c9136581b3 816 SUPERFAMILY SSF52540 481 800 3.2E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24935 557f477ac924d0a0602052f078ab95b3 224 SUPERFAMILY SSF50475 44 176 2.13E-13 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS24935 557f477ac924d0a0602052f078ab95b3 224 Gene3D G3DSA:2.30.110.10 33 170 4.2E-22 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS24935 557f477ac924d0a0602052f078ab95b3 224 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 42 135 1.9E-10 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Gene3D G3DSA:1.25.40.10 57 121 1.1E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Pfam PF13432 Tetratricopeptide repeat 132 190 2.8E-10 T 06-07-2017 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Pfam PF13432 Tetratricopeptide repeat 63 126 2.6E-11 T 06-07-2017 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 126 159 2.0E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 274 307 0.014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 232 265 0.028 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 58 91 0.0054 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 160 193 0.17 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 198 231 0.0015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SMART SM00028 92 125 1.7E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Pfam PF13181 Tetratricopeptide repeat 200 230 6.5E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SUPERFAMILY SSF48439 67 260 3.66E-33 T 06-07-2017 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 SUPERFAMILY SSF48452 269 321 1.07E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Gene3D G3DSA:1.25.40.10 122 176 2.2E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Gene3D G3DSA:1.25.40.10 177 317 2.5E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19240 e072785b5021be879c46c2bc8fb38a79 333 Pfam PF13424 Tetratricopeptide repeat 232 302 7.8E-9 T 06-07-2017 APT55_RS04920 bc696718f904f3ae6e1a2e4e937f888f 390 SUPERFAMILY SSF53383 13 379 9.62E-101 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS04920 bc696718f904f3ae6e1a2e4e937f888f 390 PIRSF PIRSF000390 8 383 2.0E-100 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS04920 bc696718f904f3ae6e1a2e4e937f888f 390 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 21 376 6.4E-115 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS04920 bc696718f904f3ae6e1a2e4e937f888f 390 Gene3D G3DSA:3.90.1150.10 251 380 7.2E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS04920 bc696718f904f3ae6e1a2e4e937f888f 390 Gene3D G3DSA:3.40.640.10 18 249 4.7E-71 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS29935 b122f278d767f5f4d14b27a1801b5a31 308 Gene3D G3DSA:1.10.150.130 44 119 7.7E-14 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS29935 b122f278d767f5f4d14b27a1801b5a31 308 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 46 108 8.3E-11 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS29935 b122f278d767f5f4d14b27a1801b5a31 308 SUPERFAMILY SSF56349 34 300 1.09E-56 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS29935 b122f278d767f5f4d14b27a1801b5a31 308 Gene3D G3DSA:1.10.443.10 136 302 1.5E-47 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS29935 b122f278d767f5f4d14b27a1801b5a31 308 Pfam PF00589 Phage integrase family 136 297 4.6E-35 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS06985 5a0c8842798b56714a2aa08161acff91 116 Pfam PF12773 Double zinc ribbon 4 58 1.3E-8 T 06-07-2017 IPR025874 Double zinc ribbon APT55_RS17445 ac54ac25f48d523b8843d23457ed85e3 784 SUPERFAMILY SSF48208 343 768 9.72E-39 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS17445 ac54ac25f48d523b8843d23457ed85e3 784 Pfam PF12215 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term 39 354 2.7E-89 T 06-07-2017 IPR024462 Glycosyl-hydrolase family 116, N-terminal KEGG: 00511+3.2.1.45|KEGG: 00600+3.2.1.45|Reactome: R-HSA-1660662 APT55_RS17445 ac54ac25f48d523b8843d23457ed85e3 784 PIRSF PIRSF028944 1 782 0.0 T 06-07-2017 IPR014551 Beta-glucosidase GBA2-type GO:0004348|GO:0006680|GO:0016020 KEGG: 00511+3.2.1.45|KEGG: 00600+3.2.1.45|Reactome: R-HSA-1660662 APT55_RS17445 ac54ac25f48d523b8843d23457ed85e3 784 Pfam PF04685 Glycosyl-hydrolase family 116, catalytic region 403 773 2.8E-129 T 06-07-2017 IPR006775 Glycosyl-hydrolase family 116, catalytic region GO:0004553 KEGG: 00511+3.2.1.45|KEGG: 00600+3.2.1.45|Reactome: R-HSA-1660662 APT55_RS13800 1836b35c9b05903ed9c17eb4e7d5e25f 84 SUPERFAMILY SSF47413 2 56 5.22E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13800 1836b35c9b05903ed9c17eb4e7d5e25f 84 Gene3D G3DSA:1.10.260.40 1 54 2.5E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13800 1836b35c9b05903ed9c17eb4e7d5e25f 84 Pfam PF01381 Helix-turn-helix 16 54 7.6E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 Pfam PF01478 Type IV leader peptidase family 108 225 5.3E-21 T 06-07-2017 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 15 96 3.0E-31 T 06-07-2017 IPR010627 Peptidase A24A, N-terminal APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 182 192 1.3E-13 T 06-07-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 193 204 1.3E-13 T 06-07-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 205 220 1.3E-13 T 06-07-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT55_RS26430 aa5c73b0064d6c17f52f97769ab3e1e5 269 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 116 133 1.3E-13 T 06-07-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.450.20 245 276 5.7E-4 T 06-07-2017 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55874 1057 1224 3.01E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55781 393 562 1.26E-16 T 06-07-2017 IPR029016 GAF domain-like APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 710 813 7.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1115 1224 2.2E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55874 647 813 2.62E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00065 414 563 0.0015 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF00512 His Kinase A (phospho-acceptor) domain 593 658 1.1E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1002 1066 5.5E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF47384 580 659 7.06E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.40.50.2300 864 988 6.4E-40 T 06-07-2017 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00448 867 979 1.3E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55785 34 134 2.09E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF47384 989 1069 7.06E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00387 1115 1226 6.1E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00387 704 815 1.5E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.450.20 21 132 4.0E-14 T 06-07-2017 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.450.20 277 390 1.2E-15 T 06-07-2017 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55785 262 390 3.14E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 35 138 9.0E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 275 398 2.3E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF00072 Response regulator receiver domain 869 980 2.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.565.10 1069 1227 2.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.565.10 659 815 2.9E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00388 1002 1068 6.7E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SMART SM00388 592 658 9.4E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 775 793 1.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 740 754 1.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 758 768 1.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 812 1.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:1.10.287.130 583 654 1.8E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:1.10.287.130 995 1064 4.9E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF08448 PAS fold 36 134 4.0E-15 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF13188 PAS domain 151 214 0.0012 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Pfam PF13188 PAS domain 277 338 0.015 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.450.40 391 567 6.5E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF52172 858 992 1.85E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 SUPERFAMILY SSF55785 138 262 1.38E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS05050 afba82e21a893212b0b7024191ab8d5c 1238 Gene3D G3DSA:3.30.450.20 138 244 7.3E-15 T 06-07-2017 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 Pfam PF01979 Amidohydrolase family 11 307 1.9E-19 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 Gene3D G3DSA:3.20.20.140 2 341 3.1E-137 T 06-07-2017 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 3 341 6.7E-157 T 06-07-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 SUPERFAMILY SSF51556 1 341 1.23E-146 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 PIRSF PIRSF001237 1 342 6.2E-147 T 06-07-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 ProSitePatterns PS00483 Dihydroorotase signature 2. 244 255 - T 06-07-2017 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 APT55_RS13355 e84f343e594d3697b05ea0504f629f5d 342 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 06-07-2017 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 APT55_RS28465 423414d180bd513d0982161a526abb6b 121 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 59 120 3.4E-12 T 06-07-2017 APT55_RS28465 423414d180bd513d0982161a526abb6b 121 SUPERFAMILY SSF69318 19 120 7.59E-12 T 06-07-2017 APT55_RS28465 423414d180bd513d0982161a526abb6b 121 Gene3D G3DSA:2.130.10.130 35 120 4.4E-8 T 06-07-2017 APT55_RS09550 374e364d181f81fdafe42c50202502c6 100 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 100 28.079 T 06-07-2017 IPR023036 Ribosomal protein S14, bacterial/plastid APT55_RS09550 374e364d181f81fdafe42c50202502c6 100 SUPERFAMILY SSF57716 2 100 3.64E-38 T 06-07-2017 APT55_RS09550 374e364d181f81fdafe42c50202502c6 100 ProSitePatterns PS00527 Ribosomal protein S14 signature. 62 84 - T 06-07-2017 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS09550 374e364d181f81fdafe42c50202502c6 100 Gene3D G3DSA:4.10.830.10 41 100 1.6E-32 T 06-07-2017 APT55_RS09550 374e364d181f81fdafe42c50202502c6 100 Pfam PF00253 Ribosomal protein S14p/S29e 46 99 2.3E-27 T 06-07-2017 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS28585 6fc4cb1e17f5ea64a3b4ed5557c867fc 133 SUPERFAMILY SSF55298 9 133 1.73E-29 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS28585 6fc4cb1e17f5ea64a3b4ed5557c867fc 133 Pfam PF01042 Endoribonuclease L-PSP 21 131 5.4E-25 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family APT55_RS28585 6fc4cb1e17f5ea64a3b4ed5557c867fc 133 Gene3D G3DSA:3.30.1330.40 2 133 2.4E-35 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS22470 ed47507a195ac192b593ddd1edefaf39 110 SUPERFAMILY SSF51182 4 102 4.75E-18 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS22470 ed47507a195ac192b593ddd1edefaf39 110 Pfam PF07883 Cupin domain 35 102 1.3E-11 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS22470 ed47507a195ac192b593ddd1edefaf39 110 Gene3D G3DSA:2.60.120.10 16 104 1.1E-39 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 SUPERFAMILY SSF46785 16 79 3.95E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 SUPERFAMILY SSF53067 91 395 1.4E-41 T 06-07-2017 APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 Gene3D G3DSA:3.30.420.40 229 354 1.2E-27 T 06-07-2017 APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 Gene3D G3DSA:3.30.420.40 88 228 5.7E-34 T 06-07-2017 APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 Gene3D G3DSA:1.10.10.10 16 87 2.7E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 Pfam PF13412 Winged helix-turn-helix DNA-binding 24 65 1.4E-6 T 06-07-2017 APT55_RS20325 3dac04e87d4d71ad1649bb447f13feec 409 Pfam PF00480 ROK family 115 394 5.2E-36 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 PIRSF PIRSF000388 1 260 1.1E-101 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 Gene3D G3DSA:3.20.20.60 3 259 1.6E-107 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 3 260 40.291 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 258 1.2E-106 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 2 259 1.5E-105 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT55_RS02425 a50d8510b4922f09051346bfb0299f8d 260 SUPERFAMILY SSF51621 3 259 3.27E-97 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS01145 c4a15f4455f6c2bbb75145baafaff662 502 SUPERFAMILY SSF51445 4 495 5.41E-174 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS01145 c4a15f4455f6c2bbb75145baafaff662 502 Gene3D G3DSA:3.20.20.80 3 495 5.0E-181 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS01145 c4a15f4455f6c2bbb75145baafaff662 502 Pfam PF02446 4-alpha-glucanotransferase 11 474 2.4E-166 T 06-07-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS01145 c4a15f4455f6c2bbb75145baafaff662 502 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 5 495 4.8E-134 T 06-07-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 PIRSF PIRSF000804 1 377 4.9E-129 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 SUPERFAMILY SSF55979 1 123 1.17E-20 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 SUPERFAMILY SSF55979 136 252 1.29E-20 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 123 1.8E-29 T 06-07-2017 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Gene3D G3DSA:3.10.150.10 126 255 1.8E-36 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Gene3D G3DSA:3.10.150.10 1 125 1.0E-27 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Pfam PF02767 DNA polymerase III beta subunit, central domain 135 251 6.4E-33 T 06-07-2017 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 253 375 2.5E-36 T 06-07-2017 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 Gene3D G3DSA:3.10.150.10 257 376 1.1E-34 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 SMART SM00480 17 372 3.6E-137 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 SUPERFAMILY SSF55979 253 376 1.01E-33 T 06-07-2017 APT55_RS09685 0f0a0706b8218b921e39c4a1d975233d 378 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 375 1.1E-110 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 Pfam PF01380 SIS domain 43 173 2.9E-27 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 Gene3D G3DSA:3.10.580.10 194 324 9.8E-30 T 06-07-2017 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 SUPERFAMILY SSF53697 15 324 6.9E-58 T 06-07-2017 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 PIRSF PIRSF004692 1 327 4.5E-119 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 47 317 3.9E-84 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 Pfam PF00571 CBS domain 203 257 2.3E-4 T 06-07-2017 IPR000644 CBS domain APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 Pfam PF00571 CBS domain 271 324 4.7E-8 T 06-07-2017 IPR000644 CBS domain APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 Gene3D G3DSA:3.40.50.10490 15 193 1.7E-46 T 06-07-2017 APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 SMART SM00116 277 327 2.1 T 06-07-2017 IPR000644 CBS domain APT55_RS27780 67e31e87436cac9ae9072248754569f6 327 SMART SM00116 210 258 8.1 T 06-07-2017 IPR000644 CBS domain APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 SMART SM00823 Phosphopantetheine attachment site 7 79 4.2E-4 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 SUPERFAMILY SSF47336 1 80 1.09E-25 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 4 77 2.1E-36 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 Gene3D G3DSA:1.10.1200.10 5 79 1.6E-35 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 Pfam PF00550 Phosphopantetheine attachment site 8 75 2.0E-17 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 22.785 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS22590 c89f93871becbbc8e8e5560fc4aef5c7 83 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS10050 ad76222a069fe152e56e9403832948b8 390 Gene3D G3DSA:1.10.630.10 156 292 2.1E-4 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS10050 ad76222a069fe152e56e9403832948b8 390 SUPERFAMILY SSF48264 153 295 8.87E-9 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS25305 64ae7902b88969bd86ceb444f95beaa6 337 Pfam PF00072 Response regulator receiver domain 219 329 7.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS25305 64ae7902b88969bd86ceb444f95beaa6 337 SUPERFAMILY SSF52172 216 334 6.55E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS25305 64ae7902b88969bd86ceb444f95beaa6 337 Gene3D G3DSA:3.40.50.2300 216 334 3.0E-32 T 06-07-2017 APT55_RS25305 64ae7902b88969bd86ceb444f95beaa6 337 SMART SM00448 217 329 9.4E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS20670 3ee5a1f28fe66a048e89401019eaeab8 229 SUPERFAMILY SSF141571 40 207 1.57E-45 T 06-07-2017 APT55_RS20670 3ee5a1f28fe66a048e89401019eaeab8 229 Pfam PF00805 Pentapeptide repeats (8 copies) 113 142 1.0E-5 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20670 3ee5a1f28fe66a048e89401019eaeab8 229 Pfam PF00805 Pentapeptide repeats (8 copies) 169 207 6.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20670 3ee5a1f28fe66a048e89401019eaeab8 229 Pfam PF00805 Pentapeptide repeats (8 copies) 74 111 9.8E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS01395 dcc31a175d930635a70420ae10c77edd 118 SUPERFAMILY SSF54909 1 112 1.93E-34 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS01395 dcc31a175d930635a70420ae10c77edd 118 Pfam PF03795 YCII-related domain 1 112 3.2E-22 T 06-07-2017 IPR005545 YCII-related APT55_RS01395 dcc31a175d930635a70420ae10c77edd 118 Gene3D G3DSA:3.30.70.1060 1 112 6.6E-40 T 06-07-2017 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Gene3D G3DSA:1.10.287.130 148 199 9.9E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Gene3D G3DSA:1.10.287.130 222 266 8.8E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SUPERFAMILY SSF52172 315 426 1.07E-17 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SMART SM00388 211 269 2.8E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SMART SM00388 138 206 0.075 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SUPERFAMILY SSF52172 480 600 3.13E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Gene3D G3DSA:3.40.50.2300 317 417 4.9E-16 T 06-07-2017 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Gene3D G3DSA:3.40.50.2300 473 602 1.5E-40 T 06-07-2017 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Gene3D G3DSA:3.40.50.2300 1 121 2.4E-41 T 06-07-2017 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SMART SM00448 2 115 9.4E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SMART SM00448 303 405 1.0E-5 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SMART SM00448 482 595 1.1E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SUPERFAMILY SSF47384 146 204 1.45E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SUPERFAMILY SSF52172 1 121 5.98E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 266 1.3E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Pfam PF00072 Response regulator receiver domain 337 405 8.1E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Pfam PF00072 Response regulator receiver domain 4 115 5.6E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 Pfam PF00072 Response regulator receiver domain 484 595 2.6E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS01890 0533087e60a0c9655ba7b10fa53897eb 605 SUPERFAMILY SSF47384 205 268 1.57E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 SUPERFAMILY SSF48452 157 193 2.68E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 SUPERFAMILY SSF48452 222 275 2.68E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 SUPERFAMILY SSF48452 53 101 2.68E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 Pfam PF13432 Tetratricopeptide repeat 223 279 1.2E-6 T 06-07-2017 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 Gene3D G3DSA:1.25.40.10 52 286 3.4E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 SMART SM00028 216 249 1.6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01740 c2a62881216d718c1e40e111b85572b1 305 SMART SM00028 250 283 22.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26735 2f77af2db0efba223e242a9bae021d5d 330 Pfam PF00535 Glycosyl transferase family 2 19 156 5.7E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS26735 2f77af2db0efba223e242a9bae021d5d 330 SUPERFAMILY SSF53448 13 270 3.47E-45 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS26735 2f77af2db0efba223e242a9bae021d5d 330 Gene3D G3DSA:3.90.550.10 15 187 2.6E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS31165 b89ae117367554d9f158fbf314765756 267 Gene3D G3DSA:3.40.50.300 20 129 8.7E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31165 b89ae117367554d9f158fbf314765756 267 SUPERFAMILY SSF52540 13 124 2.13E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03510 79bfd321a6cbe087a5f1f0936e83441b 385 SUPERFAMILY SSF51182 7 384 2.0E-89 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS03510 79bfd321a6cbe087a5f1f0936e83441b 385 Pfam PF04209 homogentisate 1,2-dioxygenase 116 382 4.2E-15 T 06-07-2017 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 APT55_RS03510 79bfd321a6cbe087a5f1f0936e83441b 385 Gene3D G3DSA:2.60.120.10 88 175 3.9E-13 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS03510 79bfd321a6cbe087a5f1f0936e83441b 385 Gene3D G3DSA:2.60.120.10 227 363 1.2E-36 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS12950 d9658e5d47f53e1fed9b96f8be8e1143 272 Pfam PF00494 Squalene/phytoene synthase 11 206 2.5E-17 T 06-07-2017 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 APT55_RS12950 d9658e5d47f53e1fed9b96f8be8e1143 272 Gene3D G3DSA:1.10.600.10 6 260 8.6E-48 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS12950 d9658e5d47f53e1fed9b96f8be8e1143 272 SUPERFAMILY SSF48576 5 259 1.18E-35 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS16960 15f0e75d56afd2381f733185e68cf463 367 Gene3D G3DSA:1.10.150.130 82 171 2.3E-7 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS16960 15f0e75d56afd2381f733185e68cf463 367 Gene3D G3DSA:1.10.443.10 177 358 8.9E-32 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS16960 15f0e75d56afd2381f733185e68cf463 367 SUPERFAMILY SSF56349 87 357 2.53E-47 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS16960 15f0e75d56afd2381f733185e68cf463 367 Pfam PF00589 Phage integrase family 180 356 1.4E-20 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS15320 47b3152b9bd2b488dcb956f5ab25aee7 145 SUPERFAMILY SSF88723 1 138 1.37E-17 T 06-07-2017 IPR029060 PIN domain-like APT55_RS15320 47b3152b9bd2b488dcb956f5ab25aee7 145 Gene3D G3DSA:3.40.50.1010 4 138 5.7E-27 T 06-07-2017 IPR029060 PIN domain-like APT55_RS15320 47b3152b9bd2b488dcb956f5ab25aee7 145 Pfam PF01850 PIN domain 6 135 1.7E-5 T 06-07-2017 IPR002716 PIN domain APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 Pfam PF13580 SIS domain 36 165 3.0E-8 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 5 298 39.473 T 06-07-2017 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 SUPERFAMILY SSF53697 7 252 4.45E-62 T 06-07-2017 APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 Gene3D G3DSA:3.40.50.10490 5 251 9.7E-76 T 06-07-2017 APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 188 205 - T 06-07-2017 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 APT55_RS25610 f574ef9902862ea6b8cee0ba72375370 302 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 9 298 5.5E-127 T 06-07-2017 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 APT55_RS20600 3a3413e6fafbbbac17f8617ccd3b8b3c 240 Pfam PF02397 Bacterial sugar transferase 41 232 1.0E-56 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS10390 19137cf6fd40097eefa83588d9a998b4 1014 Gene3D G3DSA:3.40.50.300 327 393 4.2E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10390 19137cf6fd40097eefa83588d9a998b4 1014 Gene3D G3DSA:3.40.1360.10 166 288 3.6E-5 T 06-07-2017 APT55_RS10390 19137cf6fd40097eefa83588d9a998b4 1014 SUPERFAMILY SSF52540 482 595 5.4E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10390 19137cf6fd40097eefa83588d9a998b4 1014 SUPERFAMILY SSF52540 326 454 5.4E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10390 19137cf6fd40097eefa83588d9a998b4 1014 Pfam PF12965 Domain of unknown function (DUF3854) 160 278 2.0E-41 T 06-07-2017 IPR024385 Domain of unknown function DUF3854 APT55_RS12555 992ebbf25ddfb893ff35f5f1e147d33c 184 SUPERFAMILY SSF52833 40 160 2.35E-11 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS12555 992ebbf25ddfb893ff35f5f1e147d33c 184 Gene3D G3DSA:3.40.30.10 53 153 2.0E-9 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 SUPERFAMILY SSF51306 75 201 1.1E-21 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 Gene3D G3DSA:2.10.109.10 76 202 9.9E-27 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 Hamap MF_00015 LexA repressor [lexA]. 3 203 27.045 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 Gene3D G3DSA:1.10.10.10 1 69 6.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 Pfam PF01726 LexA DNA binding domain 1 65 6.6E-25 T 06-07-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 9.8E-6 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 9.8E-6 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 153 165 9.8E-6 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 TIGRFAM TIGR00498 lexA: repressor LexA 1 201 9.1E-56 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 SUPERFAMILY SSF46785 3 70 2.41E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01505 e052924db1dabdd9e60a850485263a68 206 Pfam PF00717 Peptidase S24-like 114 180 6.7E-9 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B APT55_RS14450 b9c567eb2020afb27becda4d2eff5755 399 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 17 394 1.4E-90 T 06-07-2017 IPR018721 Protein of unknown function DUF2252 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 104 124 8.4E-6 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 317 341 8.4E-6 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 229 451 9.5E-35 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 SUPERFAMILY SSF51230 87 126 2.57E-5 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 Gene3D G3DSA:2.40.50.100 88 124 1.9E-11 T 06-07-2017 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 Gene3D G3DSA:2.40.50.100 265 302 1.9E-11 T 06-07-2017 APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 208 377 6.0E-32 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS23405 66d6c08abdd8c23ee831283533310a0e 552 SUPERFAMILY SSF111369 223 381 2.88E-13 T 06-07-2017 APT55_RS09275 929799d6f03f5f069c6f6826854da5ba 280 SUPERFAMILY SSF55874 134 275 9.82E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09275 929799d6f03f5f069c6f6826854da5ba 280 Pfam PF13581 Histidine kinase-like ATPase domain 172 252 1.3E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09275 929799d6f03f5f069c6f6826854da5ba 280 Gene3D G3DSA:3.30.565.10 134 235 4.4E-9 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09275 929799d6f03f5f069c6f6826854da5ba 280 SMART SM00387 180 276 1.2E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS09275 929799d6f03f5f069c6f6826854da5ba 280 Pfam PF07568 Histidine kinase 83 158 5.9E-28 T 06-07-2017 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain APT55_RS08660 5e5d64ea7df052379a2b7f74ecb5e71b 126 SUPERFAMILY SSF81301 1 122 3.04E-21 T 06-07-2017 APT55_RS27770 fd28d603bd37934e1317f328f2134440 339 Pfam PF00535 Glycosyl transferase family 2 10 131 5.8E-14 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS27770 fd28d603bd37934e1317f328f2134440 339 SUPERFAMILY SSF53448 8 257 4.78E-26 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27770 fd28d603bd37934e1317f328f2134440 339 Gene3D G3DSA:3.90.550.10 8 242 3.1E-17 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Pfam PF01336 OB-fold nucleic acid binding domain 18 103 1.3E-17 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 588 2.3E-252 T 06-07-2017 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 Reactome: R-HSA-379726 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 SUPERFAMILY SSF50249 1 105 8.0E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 197 209 1.4E-26 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 214 227 1.4E-26 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 1.4E-26 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 1.4E-26 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Pfam PF00152 tRNA synthetases class II (D, K and N) 124 564 2.9E-111 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 SUPERFAMILY SSF55261 296 429 7.52E-35 T 06-07-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 569 36.54 T 06-07-2017 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Pfam PF02938 GAD domain 315 415 4.0E-23 T 06-07-2017 IPR029351 GAD domain Reactome: R-HSA-379726 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Gene3D G3DSA:3.30.1360.30 284 423 1.6E-38 T 06-07-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Gene3D G3DSA:2.40.50.140 1 106 1.1E-37 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 SUPERFAMILY SSF55681 124 318 1.21E-106 T 06-07-2017 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 SUPERFAMILY SSF55681 414 564 1.21E-106 T 06-07-2017 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Gene3D G3DSA:3.30.930.10 424 588 1.8E-117 T 06-07-2017 APT55_RS05685 a6ff03a159822e1a1a3183b2e412edf1 598 Gene3D G3DSA:3.30.930.10 138 283 1.8E-117 T 06-07-2017 APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 SMART SM00382 385 570 5.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 Pfam PF00664 ABC transporter transmembrane region 28 312 3.1E-44 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 SUPERFAMILY SSF90123 16 346 3.66E-72 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 Pfam PF00005 ABC transporter 376 524 1.3E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 Gene3D G3DSA:3.40.50.300 360 587 2.7E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 Gene3D G3DSA:1.20.1560.10 16 342 5.6E-75 T 06-07-2017 APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 SUPERFAMILY SSF52540 350 595 6.56E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16130 872ad2a17aeab41ed717133a89651906 598 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.0E-42 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 PIRSF PIRSF039144 1 112 1.5E-52 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 06-07-2017 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 06-07-2017 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 Gene3D G3DSA:3.30.70.120 2 111 1.4E-46 T 06-07-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 SMART SM00938 4 105 5.4E-60 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 SUPERFAMILY SSF54913 1 112 9.53E-43 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 PRINTS PR00340 P-II protein signature 23 41 3.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 PRINTS PR00340 P-II protein signature 2 17 3.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 PRINTS PR00340 P-II protein signature 52 75 3.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS17110 95812cc32b98b83cff95febdcc7bda04 112 PRINTS PR00340 P-II protein signature 83 103 3.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT55_RS21770 c0a8b15b3b8c8cbc1c14ccdb5703d57c 184 ProSitePatterns PS00194 Thioredoxin family active site. 59 77 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 APT55_RS21770 c0a8b15b3b8c8cbc1c14ccdb5703d57c 184 Pfam PF00085 Thioredoxin 55 138 4.9E-17 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS21770 c0a8b15b3b8c8cbc1c14ccdb5703d57c 184 Gene3D G3DSA:3.40.30.10 47 141 1.9E-20 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS21770 c0a8b15b3b8c8cbc1c14ccdb5703d57c 184 SUPERFAMILY SSF52833 47 144 4.09E-20 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18180 30d80819529bb81f9d0f5584fd3d7e03 91 Pfam PF02597 ThiS family 5 91 2.6E-19 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 APT55_RS18180 30d80819529bb81f9d0f5584fd3d7e03 91 Gene3D G3DSA:3.10.20.30 3 89 3.7E-29 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS18180 30d80819529bb81f9d0f5584fd3d7e03 91 SUPERFAMILY SSF54285 1 91 4.36E-27 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF13599 Pentapeptide repeats (9 copies) 205 269 1.6E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 SUPERFAMILY SSF141571 52 128 2.75E-22 T 06-07-2017 APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 SUPERFAMILY SSF141571 151 315 1.64E-36 T 06-07-2017 APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Gene3D G3DSA:3.80.10.10 50 285 5.7E-6 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF00805 Pentapeptide repeats (8 copies) 355 393 1.8E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF00805 Pentapeptide repeats (8 copies) 51 88 1.3E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF00805 Pentapeptide repeats (8 copies) 281 317 1.6E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF00805 Pentapeptide repeats (8 copies) 151 187 1.2E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 Pfam PF00805 Pentapeptide repeats (8 copies) 91 128 1.3E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS09535 c893ad87ed8cccd26468a03f8b844df8 435 SUPERFAMILY SSF141571 262 428 1.22E-40 T 06-07-2017 APT55_RS20695 1d73351e870f6f85e904c4f02f99cf1b 153 PIRSF PIRSF005859 1 150 2.1E-31 T 06-07-2017 IPR004307 TspO/MBR-related protein GO:0016021 APT55_RS20695 1d73351e870f6f85e904c4f02f99cf1b 153 Pfam PF03073 TspO/MBR family 10 145 1.7E-23 T 06-07-2017 IPR004307 TspO/MBR-related protein GO:0016021 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 PRINTS PR01035 Tetracycline resistance protein signature 68 87 4.7E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 PRINTS PR01035 Tetracycline resistance protein signature 153 175 4.7E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 Pfam PF07690 Major Facilitator Superfamily 37 431 5.0E-59 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 Gene3D G3DSA:1.20.1250.20 26 211 2.1E-32 T 06-07-2017 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 33 519 2.2E-133 T 06-07-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 Gene3D G3DSA:1.20.1250.20 502 525 1.9E-14 T 06-07-2017 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 Gene3D G3DSA:1.20.1250.20 280 445 1.9E-14 T 06-07-2017 APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 SUPERFAMILY SSF103473 22 215 1.83E-72 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 SUPERFAMILY SSF103473 501 528 1.83E-72 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS03155 03c86f23eb176dc1f684edda808d8e8d 537 SUPERFAMILY SSF103473 270 441 1.83E-72 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 6.3E-16 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 SUPERFAMILY SSF46689 7 83 1.2E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 8.1E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 8.1E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 Gene3D G3DSA:1.10.357.10 7 196 1.7E-45 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS13535 8ab22cca9194ebd895001e26fce042b2 212 SUPERFAMILY SSF48498 85 195 4.77E-8 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS26715 7d3aace1497f85ac52994a260646ef44 244 SMART SM00909 132 218 1.3E-18 T 06-07-2017 IPR019606 GerMN domain APT55_RS26715 7d3aace1497f85ac52994a260646ef44 244 Pfam PF10646 Sporulation and spore germination 102 214 1.1E-17 T 06-07-2017 IPR019606 GerMN domain APT55_RS27635 d2acd2993bc3f30073fec814a42767a8 146 Gene3D G3DSA:3.30.530.20 1 143 2.5E-9 T 06-07-2017 IPR023393 START-like domain APT55_RS27635 d2acd2993bc3f30073fec814a42767a8 146 SUPERFAMILY SSF55961 4 143 1.87E-22 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 SUPERFAMILY SSF53756 160 381 2.96E-43 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 SUPERFAMILY SSF53756 60 122 2.96E-43 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 Pfam PF00534 Glycosyl transferases group 1 216 365 3.1E-27 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 Gene3D G3DSA:3.40.50.2000 582 725 6.6E-6 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 Gene3D G3DSA:3.40.50.2000 217 365 3.8E-16 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 Pfam PF13692 Glycosyl transferases group 1 625 752 8.6E-16 T 06-07-2017 APT55_RS14990 aaabff6b1ed0bfbbc94a42ad1e7174ea 792 SUPERFAMILY SSF53756 401 786 5.76E-36 T 06-07-2017 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 111 130 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 243 262 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 359 377 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 214 230 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 93 111 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 27 52 5.3E-34 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 SUPERFAMILY SSF56235 2 385 2.12E-122 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS14755 6ba6e13161e02477b2448148d1f0ca4f 397 Pfam PF01019 Gamma-glutamyltranspeptidase 20 385 2.8E-113 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 1.6E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 1.6E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 SMART SM00342 245 328 7.3E-29 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 Gene3D G3DSA:1.10.10.60 284 330 1.6E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 SUPERFAMILY SSF46689 229 279 2.2E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 Pfam PF12833 Helix-turn-helix domain 251 329 1.6E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 SUPERFAMILY SSF46689 283 330 2.28E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS25055 26cfd24bae12874c4d4095dcd3ed6d65 330 Gene3D G3DSA:1.10.10.60 227 283 5.2E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 SMART SM00729 99 314 0.0093 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 Gene3D G3DSA:3.20.20.70 101 320 1.7E-19 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 PIRSF PIRSF006004 1 337 3.9E-129 T 06-07-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 1 337 66.727 T 06-07-2017 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 4 334 7.4E-139 T 06-07-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 Pfam PF04055 Radical SAM superfamily 104 265 5.1E-17 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 SUPERFAMILY SSF102114 98 313 1.96E-20 T 06-07-2017 APT55_RS29150 85ad89bc1b29fa21ea6ecab81e4e4a1c 338 Pfam PF13394 4Fe-4S single cluster domain 108 187 2.8E-5 T 06-07-2017 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 123 137 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 253 268 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 305 321 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 9 22 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 210 226 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 61 77 1.4E-16 T 06-07-2017 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 SUPERFAMILY SSF51735 7 165 5.5E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 146 250 7.7E-5 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 Gene3D G3DSA:3.30.360.10 155 343 3.4E-41 T 06-07-2017 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 11 133 5.0E-29 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 SUPERFAMILY SSF55347 142 304 3.92E-34 T 06-07-2017 APT55_RS05195 4044dc645aa50608edb2ff33862d8e9b 374 Gene3D G3DSA:3.40.50.720 6 154 2.9E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 3 432 6.6E-207 T 06-07-2017 IPR017536 Glutamine synthetase, type III GO:0004356|GO:0006542 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 223 238 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 Pfam PF00120 Glutamine synthetase, catalytic domain 96 429 3.2E-108 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 SUPERFAMILY SSF55931 96 432 1.08E-107 T 06-07-2017 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 SUPERFAMILY SSF54368 4 94 3.4E-22 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 Gene3D G3DSA:3.10.20.70 4 98 1.6E-17 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 Gene3D G3DSA:3.30.590.10 99 418 3.4E-110 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT55_RS04470 e4942b8888bc2bfea022d969f65b4fbd 433 SMART SM01230 95 347 2.2E-114 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS31250 9e696a0579f28488f8af8746f92d5fc8 432 Pfam PF14281 PD-(D/E)XK nuclease superfamily 55 246 2.0E-33 T 06-07-2017 IPR029470 PD-(D/E)XK nuclease superfamily 4 APT55_RS03695 b61117337f898aa99001156e555ec81c 81 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 75 3.0E-20 T 06-07-2017 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APT55_RS03695 b61117337f898aa99001156e555ec81c 81 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.5E-11 T 06-07-2017 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APT55_RS03695 b61117337f898aa99001156e555ec81c 81 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 43 59 2.5E-11 T 06-07-2017 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APT55_RS03695 b61117337f898aa99001156e555ec81c 81 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 22 38 2.5E-11 T 06-07-2017 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APT55_RS03695 b61117337f898aa99001156e555ec81c 81 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 06-07-2017 IPR019812 Hydrogenase assembly chaperone, conserved site APT55_RS03695 b61117337f898aa99001156e555ec81c 81 SUPERFAMILY SSF159127 1 77 4.32E-21 T 06-07-2017 APT55_RS03695 b61117337f898aa99001156e555ec81c 81 Pfam PF01455 HupF/HypC family 1 68 4.6E-23 T 06-07-2017 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 Gene3D G3DSA:3.40.190.10 5 130 6.5E-31 T 06-07-2017 APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 Gene3D G3DSA:3.40.190.10 282 322 6.5E-31 T 06-07-2017 APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 PIRSF PIRSF002825 3 350 3.8E-96 T 06-07-2017 IPR026045 Ferric binding protein APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 SUPERFAMILY SSF53850 35 346 1.13E-86 T 06-07-2017 APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 Pfam PF13416 Bacterial extracellular solute-binding protein 49 314 2.9E-27 T 06-07-2017 APT55_RS26535 6af08edfd8ed2d6b2615c45b5fb6a52e 350 Gene3D G3DSA:3.40.190.10 134 281 1.0E-53 T 06-07-2017 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SMART SM00388 623 720 0.0079 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SUPERFAMILY SSF47384 688 720 3.73E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SUPERFAMILY SSF47384 618 658 3.73E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Gene3D G3DSA:3.30.450.20 257 386 2.5E-10 T 06-07-2017 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 886 1.2E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 834 844 2.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 872 885 2.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 830 2.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 847 865 2.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SUPERFAMILY SSF55781 406 573 1.98E-55 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Gene3D G3DSA:3.30.565.10 717 887 7.9E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF03707 Bacterial signalling protein N terminal repeat 117 167 1.1E-17 T 06-07-2017 IPR005330 MHYT domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF03707 Bacterial signalling protein N terminal repeat 54 112 5.9E-19 T 06-07-2017 IPR005330 MHYT domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF03707 Bacterial signalling protein N terminal repeat 185 245 3.2E-5 T 06-07-2017 IPR005330 MHYT domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF01590 GAF domain 424 564 4.4E-20 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SMART SM00387 765 888 3.6E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SUPERFAMILY SSF55874 707 886 4.45E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Gene3D G3DSA:3.30.450.40 408 566 1.5E-40 T 06-07-2017 IPR029016 GAF domain-like APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Pfam PF00512 His Kinase A (phospho-acceptor) domain 624 719 1.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SMART SM00065 424 574 1.4E-32 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 SUPERFAMILY SSF55785 252 311 5.02E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Gene3D G3DSA:1.10.287.130 687 716 5.2E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14730 cc66c0ae01f224d0ae479ae3fb26bba9 888 Gene3D G3DSA:1.10.287.130 619 649 5.2E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS31105 46d4e133561f9b07ca67cf9c1d59d64d 284 SUPERFAMILY SSF52540 8 270 1.09E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31105 46d4e133561f9b07ca67cf9c1d59d64d 284 Gene3D G3DSA:3.40.50.300 5 272 4.7E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31105 46d4e133561f9b07ca67cf9c1d59d64d 284 Pfam PF13614 AAA domain 9 193 9.5E-35 T 06-07-2017 IPR025669 AAA domain APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 510 670 1.6E-35 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 SUPERFAMILY SSF50447 917 1011 1.92E-28 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 SUPERFAMILY SSF50447 683 766 6.85E-25 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 PRINTS PR00315 GTP-binding elongation factor signature 615 624 3.3E-10 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 PRINTS PR00315 GTP-binding elongation factor signature 511 524 3.3E-10 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 PRINTS PR00315 GTP-binding elongation factor signature 563 573 3.3E-10 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 PRINTS PR00315 GTP-binding elongation factor signature 579 590 3.3E-10 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Gene3D G3DSA:3.40.50.10050 814 892 7.5E-21 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Pfam PF00009 Elongation factor Tu GTP binding domain 512 671 1.5E-33 T 06-07-2017 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Gene3D G3DSA:2.40.30.10 682 774 1.7E-22 T 06-07-2017 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 4 50 2.9E-12 T 06-07-2017 IPR006847 Translation initiation factor IF-2, N-terminal APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 431 478 2.1E-12 T 06-07-2017 IPR006847 Translation initiation factor IF-2, N-terminal APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 423 1013 3.7E-258 T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 SUPERFAMILY SSF52156 806 921 7.98E-33 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 5 1011 17.208 T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 SUPERFAMILY SSF52540 499 679 2.85E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 ProSitePatterns PS01176 Initiation factor 2 signature. 964 986 - T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Gene3D G3DSA:2.40.30.10 917 1011 5.7E-32 T 06-07-2017 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 ProSitePatterns PS00824 Elongation factor 1 beta/beta'/delta chain signature 1. 352 360 - T 06-07-2017 IPR001326 Translation elongation factor EF1B, beta/delta chains, conserved site GO:0003746|GO:0005853|GO:0006414 Reactome: R-HSA-156842 APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Gene3D G3DSA:3.40.50.300 506 670 1.0E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17435 de19f1444b944f728176faf6a50d52ec 1015 Pfam PF11987 Translation-initiation factor 2 802 904 7.2E-33 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 193 224 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 SUPERFAMILY SSF54826 3 119 1.93E-24 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 SMART SM00922 137 243 6.0E-9 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 SUPERFAMILY SSF51604 122 354 2.36E-49 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 Pfam PF13378 Enolase C-terminal domain-like 158 354 1.2E-30 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 Gene3D G3DSA:3.20.20.120 112 351 1.7E-58 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 5 119 6.9E-14 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT55_RS03335 da6763bc0535acb81997adf6c13186c9 358 Gene3D G3DSA:3.30.390.10 1 109 4.3E-26 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS21365 8c5e6ecb0d70392b02cd1a31420c4d10 415 Pfam PF06838 Methionine gamma-lyase 6 406 3.1E-200 T 06-07-2017 IPR009651 Putative methionine gamma-lyase APT55_RS21365 8c5e6ecb0d70392b02cd1a31420c4d10 415 SUPERFAMILY SSF53383 29 381 3.1E-45 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS21365 8c5e6ecb0d70392b02cd1a31420c4d10 415 Gene3D G3DSA:3.40.640.10 48 260 6.1E-39 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS25380 b478918c3eb72ac835dd6d2c843075d4 194 Pfam PF01949 Protein of unknown function DUF99 13 186 1.6E-54 T 06-07-2017 IPR002802 Protein of unknown function DUF99 APT55_RS25380 b478918c3eb72ac835dd6d2c843075d4 194 PIRSF PIRSF006380 1 194 7.5E-49 T 06-07-2017 IPR002802 Protein of unknown function DUF99 APT55_RS25380 b478918c3eb72ac835dd6d2c843075d4 194 ProDom PD016744 UPF0215 ST0304 TK2033 MA4269 PAE0952 SSO0256 NEQ431 MK0057 PTO0905 TV0037 69 189 9.0E-21 T 06-07-2017 IPR002802 Protein of unknown function DUF99 APT55_RS25380 b478918c3eb72ac835dd6d2c843075d4 194 Hamap MF_00582 UPF0215 protein . 13 187 27.621 T 06-07-2017 IPR002802 Protein of unknown function DUF99 APT55_RS25380 b478918c3eb72ac835dd6d2c843075d4 194 Gene3D G3DSA:3.30.2170.10 10 193 2.6E-57 T 06-07-2017 APT55_RS25095 be2f37a1c2d48b0f8492cc2965072607 337 Pfam PF01497 Periplasmic binding protein 73 312 5.8E-32 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS25095 be2f37a1c2d48b0f8492cc2965072607 337 SUPERFAMILY SSF53807 51 329 2.98E-58 T 06-07-2017 APT55_RS25095 be2f37a1c2d48b0f8492cc2965072607 337 Gene3D G3DSA:3.40.50.1980 53 165 3.7E-29 T 06-07-2017 APT55_RS25095 be2f37a1c2d48b0f8492cc2965072607 337 Gene3D G3DSA:3.40.50.1980 166 335 5.2E-34 T 06-07-2017 APT55_RS12970 7634b98f44507dfa71942238b2883e95 148 SUPERFAMILY SSF46785 3 136 1.17E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12970 7634b98f44507dfa71942238b2883e95 148 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 50 68 - T 06-07-2017 IPR030489 Transcription regulator Rrf2-type, conserved site APT55_RS12970 7634b98f44507dfa71942238b2883e95 148 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 133 3.7E-30 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS12970 7634b98f44507dfa71942238b2883e95 148 Pfam PF02082 Transcriptional regulator 2 83 2.9E-24 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS12970 7634b98f44507dfa71942238b2883e95 148 Gene3D G3DSA:1.10.10.10 3 140 1.5E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 SUPERFAMILY SSF90123 16 313 3.66E-29 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 Pfam PF00664 ABC transporter transmembrane region 30 291 3.4E-9 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 Gene3D G3DSA:3.40.50.300 350 585 7.5E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 SMART SM00382 376 567 3.9E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 SUPERFAMILY SSF52540 342 591 2.83E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 Gene3D G3DSA:1.20.1560.10 25 327 1.9E-23 T 06-07-2017 APT55_RS15425 fc5e979c763b068538127760c87c2da9 596 Pfam PF00005 ABC transporter 368 521 1.8E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS20380 e70ba23df8ae20f6b6c5f10108e54bbe 335 Gene3D G3DSA:2.130.10.10 221 297 3.9E-4 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS20380 e70ba23df8ae20f6b6c5f10108e54bbe 335 Gene3D G3DSA:2.130.10.10 19 114 3.9E-4 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS20380 e70ba23df8ae20f6b6c5f10108e54bbe 335 SUPERFAMILY SSF50998 228 298 4.0E-7 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS20380 e70ba23df8ae20f6b6c5f10108e54bbe 335 SUPERFAMILY SSF50998 70 112 4.0E-7 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 Gene3D G3DSA:3.90.1530.10 17 117 1.4E-24 T 06-07-2017 APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 Pfam PF02195 ParB-like nuclease domain 25 111 4.7E-14 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 SMART SM00470 23 112 1.8E-16 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 22 147 2.4E-23 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 SUPERFAMILY SSF109709 183 244 6.8E-5 T 06-07-2017 APT55_RS31075 9c8f75d735f659cf1b1faacb1d32e7c3 300 SUPERFAMILY SSF110849 22 133 4.19E-21 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 Gene3D G3DSA:3.30.390.10 1 110 2.3E-27 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 SUPERFAMILY SSF51604 100 278 2.23E-38 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 SUPERFAMILY SSF54826 1 86 1.13E-16 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 Gene3D G3DSA:3.20.20.120 111 279 6.4E-53 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 Pfam PF13378 Enolase C-terminal domain-like 100 270 3.3E-21 T 06-07-2017 IPR029065 Enolase C-terminal domain-like APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 SMART SM00922 97 194 1.9E-12 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT55_RS23640 7b1eecce65060f1bc6051b9c4f45cf4b 293 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 277 4.6E-69 T 06-07-2017 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 Gene3D G3DSA:1.20.1560.10 19 353 6.8E-64 T 06-07-2017 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 SUPERFAMILY SSF52540 357 600 1.17E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 Gene3D G3DSA:3.40.50.300 364 594 2.8E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 SUPERFAMILY SSF90123 19 353 2.09E-63 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 Pfam PF00005 ABC transporter 381 529 5.2E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 Pfam PF00664 ABC transporter transmembrane region 33 312 9.9E-40 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS07155 a7625d44299b3ea39f403b1029266452 616 SMART SM00382 390 576 8.6E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 Gene3D G3DSA:1.10.1520.10 12 158 5.6E-33 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 Pfam PF00035 Double-stranded RNA binding motif 166 233 5.1E-12 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 26 230 4.0E-54 T 06-07-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 SUPERFAMILY SSF54768 119 233 1.04E-20 T 06-07-2017 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 SUPERFAMILY SSF69065 6 161 7.85E-34 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 Gene3D G3DSA:3.30.160.20 165 230 6.4E-21 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 SMART SM00358 166 234 5.1E-11 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 Hamap MF_00104 Ribonuclease 3 [rnc]. 15 230 24.408 T 06-07-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 ProSitePatterns PS00517 Ribonuclease III family signature. 48 56 - T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 SMART SM00535 30 159 4.8E-34 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS22775 a87fc316527ca48db425084b4ad2bc58 238 Pfam PF00636 Ribonuclease III domain 48 135 2.3E-17 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 APT55_RS25065 f59ca755e25697fa374341856aff9977 275 Gene3D G3DSA:3.40.50.300 11 243 2.7E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25065 f59ca755e25697fa374341856aff9977 275 Pfam PF00005 ABC transporter 28 175 3.0E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25065 f59ca755e25697fa374341856aff9977 275 SUPERFAMILY SSF52540 12 237 1.63E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25065 f59ca755e25697fa374341856aff9977 275 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS25065 f59ca755e25697fa374341856aff9977 275 SMART SM00382 36 225 1.5E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17875 73c368560b1c86fffc9a9ee88ac85f00 366 Pfam PF13439 Glycosyltransferase Family 4 18 176 2.1E-10 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS17875 73c368560b1c86fffc9a9ee88ac85f00 366 SUPERFAMILY SSF53756 4 366 4.89E-62 T 06-07-2017 APT55_RS17875 73c368560b1c86fffc9a9ee88ac85f00 366 Gene3D G3DSA:3.40.50.2000 174 339 6.2E-22 T 06-07-2017 APT55_RS17875 73c368560b1c86fffc9a9ee88ac85f00 366 Pfam PF00534 Glycosyl transferases group 1 198 340 1.0E-28 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS01275 7f942e416823dc7b3c972efde1587df5 140 Pfam PF00472 RF-1 domain 6 132 4.8E-29 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS01275 7f942e416823dc7b3c972efde1587df5 140 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT55_RS01275 7f942e416823dc7b3c972efde1587df5 140 SUPERFAMILY SSF75620 7 128 3.06E-15 T 06-07-2017 APT55_RS01275 7f942e416823dc7b3c972efde1587df5 140 Gene3D G3DSA:3.30.160.200 2 106 7.2E-38 T 06-07-2017 APT55_RS16530 cf4a7c20d152bd1a78be735f0d9618b0 93 Gene3D G3DSA:3.30.1390.10 4 92 7.2E-28 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS16530 cf4a7c20d152bd1a78be735f0d9618b0 93 SUPERFAMILY SSF54736 13 90 1.2E-23 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS16530 cf4a7c20d152bd1a78be735f0d9618b0 93 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 16 82 9.2E-21 T 06-07-2017 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 APT55_RS16530 cf4a7c20d152bd1a78be735f0d9618b0 93 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 4 93 15.759 T 06-07-2017 IPR022935 ATP-dependent Clp protease adaptor protein ClpS APT55_RS21785 890de58b4fbc827b282b2482289b95f2 314 Gene3D G3DSA:3.90.420.10 9 197 9.8E-50 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS21785 890de58b4fbc827b282b2482289b95f2 314 Gene3D G3DSA:2.60.40.650 203 294 1.7E-13 T 06-07-2017 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 APT55_RS21785 890de58b4fbc827b282b2482289b95f2 314 SUPERFAMILY SSF56524 9 202 5.89E-53 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS21785 890de58b4fbc827b282b2482289b95f2 314 Pfam PF00174 Oxidoreductase molybdopterin binding domain 32 180 6.6E-38 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS21785 890de58b4fbc827b282b2482289b95f2 314 SUPERFAMILY SSF81296 203 288 7.7E-14 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Pfam PF08463 EcoEI R protein C-terminal 942 1104 7.9E-37 T 06-07-2017 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Gene3D G3DSA:3.40.50.300 524 597 2.9E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Gene3D G3DSA:3.40.50.300 406 489 2.9E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Gene3D G3DSA:3.40.50.300 664 807 4.0E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 SMART SM00490 706 795 0.0063 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Pfam PF04851 Type III restriction enzyme, res subunit 406 589 4.8E-34 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 232 346 4.0E-9 T 06-07-2017 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 Pfam PF00271 Helicase conserved C-terminal domain 692 793 6.4E-7 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 SMART SM00487 404 617 3.0E-13 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 SUPERFAMILY SSF52540 658 798 7.53E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19925 d3645dea5e79131173ebf6b4b6e93004 1108 SUPERFAMILY SSF52540 424 591 7.53E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Pfam PF13492 GAF domain 355 401 6.3E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Pfam PF00512 His Kinase A (phospho-acceptor) domain 449 513 1.1E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SMART SM00065 76 220 0.0024 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SMART SM00065 241 411 7.6E-10 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SMART SM00387 560 678 3.5E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SUPERFAMILY SSF47384 431 514 5.49E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Pfam PF01590 GAF domain 78 210 1.0E-5 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Gene3D G3DSA:3.30.450.40 222 424 1.3E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Gene3D G3DSA:3.30.450.40 65 221 9.5E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 616 626 8.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 651 8.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 612 8.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 662 675 8.9E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SUPERFAMILY SSF55781 78 221 1.61E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SMART SM00388 448 514 5.8E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SUPERFAMILY SSF55781 221 410 1.61E-15 T 06-07-2017 IPR029016 GAF domain-like APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 563 676 4.2E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Gene3D G3DSA:1.10.287.130 439 508 1.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 Gene3D G3DSA:3.30.565.10 520 675 2.7E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07640 9a32b55f7bc2fbb849b9a7d705fa50df 683 SUPERFAMILY SSF55874 503 676 5.76E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05790 c010f8368a554de626d1a1071db5bf32 163 Pfam PF02517 CAAX protease self-immunity 56 145 4.1E-13 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 Pfam PF05860 haemagglutination activity domain 13 125 6.6E-34 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 SMART SM00912 15 126 3.2E-24 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 SUPERFAMILY SSF51126 9 353 7.85E-46 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 SUPERFAMILY SSF51126 367 499 2.32E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 SUPERFAMILY SSF51126 529 559 2.32E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 44 121 7.1E-27 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 Gene3D G3DSA:2.160.20.10 28 274 2.0E-28 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS26625 3b1840087c6af1bc73977410960d4945 807 Gene3D G3DSA:2.160.20.10 342 408 2.0E-28 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 SUPERFAMILY SSF53474 201 273 1.73E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 SUPERFAMILY SSF53474 7 136 1.73E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 7.4E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 7.4E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 7.4E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 7.4E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 Gene3D G3DSA:3.40.50.1820 13 274 1.4E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS03460 27b9241260e8d352a2c06fea7e551b86 287 Pfam PF12146 Serine aminopeptidase, S33 26 257 2.4E-63 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 Pfam PF01649 Ribosomal protein S20 2 91 8.0E-29 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 93 1.4E-24 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 93 17.714 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 15 88 1.0E-20 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 SUPERFAMILY SSF46992 3 93 3.53E-28 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS00165 3e3982707bcd30e0258ffee643e77a97 99 Gene3D G3DSA:1.20.58.110 2 93 9.9E-31 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 354 435 1.0E-30 T 06-07-2017 IPR032859 GTPase Der, C-terminal KH-domain-like APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 434 2.9E-166 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 7.3E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 74 92 7.3E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 PIRSF PIRSF006485 2 443 1.2E-166 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Pfam PF01926 50S ribosome-binding GTPase 6 121 6.2E-25 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Pfam PF01926 50S ribosome-binding GTPase 178 296 9.0E-26 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 SUPERFAMILY SSF52540 4 173 3.84E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 176 344 8.4E-26 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 127 2.3E-19 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 SUPERFAMILY SSF52540 140 437 1.7E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Hamap MF_00195 GTPase Der [der]. 3 438 38.405 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Gene3D G3DSA:3.40.50.300 3 170 5.7E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Gene3D G3DSA:3.40.50.300 174 358 2.4E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05095 ae179fa4f4fb00e67ce9fffc6a93636e 454 Gene3D G3DSA:3.30.300.20 359 438 3.3E-33 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS09400 9449c3ea7843a405c5b05c02540c24e9 120 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 119 8.6E-37 T 06-07-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 APT55_RS09400 9449c3ea7843a405c5b05c02540c24e9 120 Pfam PF01521 Iron-sulphur cluster biosynthesis 14 116 3.3E-21 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS09400 9449c3ea7843a405c5b05c02540c24e9 120 Gene3D G3DSA:2.60.300.12 14 109 1.7E-31 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS09400 9449c3ea7843a405c5b05c02540c24e9 120 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 101 118 - T 06-07-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site APT55_RS09400 9449c3ea7843a405c5b05c02540c24e9 120 SUPERFAMILY SSF89360 14 108 5.1E-31 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Gene3D G3DSA:3.30.565.10 286 451 1.5E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Gene3D G3DSA:1.10.287.130 185 215 1.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Gene3D G3DSA:1.10.287.130 251 280 1.0E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 450 8.4E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SMART SM00448 9 122 3.7E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Gene3D G3DSA:3.40.50.2300 9 135 3.7E-40 T 06-07-2017 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 190 282 2.0E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SUPERFAMILY SSF52172 9 170 9.53E-42 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 Pfam PF00072 Response regulator receiver domain 11 122 1.2E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SUPERFAMILY SSF47384 184 224 2.35E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SUPERFAMILY SSF47384 252 262 2.35E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SUPERFAMILY SSF55874 272 451 5.24E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 SMART SM00387 329 451 8.7E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 7.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 7.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 7.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS03275 6d5ecbb4bd1cc2f16d67023f4213dee9 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 450 7.8E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 405 2.0E-156 T 06-07-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Gene3D G3DSA:3.30.930.10 1 183 5.5E-96 T 06-07-2017 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Gene3D G3DSA:3.30.930.10 219 318 5.5E-96 T 06-07-2017 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 SUPERFAMILY SSF52954 322 411 8.61E-23 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Gene3D G3DSA:3.40.50.800 323 411 1.5E-26 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 SUPERFAMILY SSF55681 3 317 2.11E-99 T 06-07-2017 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 418 33.367 T 06-07-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Pfam PF13393 Histidyl-tRNA synthetase 8 310 2.3E-48 T 06-07-2017 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 PIRSF PIRSF001549 1 415 2.6E-119 T 06-07-2017 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 APT55_RS09370 6b89b279ea77c19eedfc67f87095ad5b 424 Pfam PF03129 Anticodon binding domain 329 410 1.0E-13 T 06-07-2017 IPR004154 Anticodon-binding APT55_RS15330 35c5733478cdaef93834c28200a1a871 241 Gene3D G3DSA:3.40.50.300 4 230 1.3E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15330 35c5733478cdaef93834c28200a1a871 241 SMART SM00382 30 207 9.3E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS15330 35c5733478cdaef93834c28200a1a871 241 SUPERFAMILY SSF52540 5 222 6.45E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15330 35c5733478cdaef93834c28200a1a871 241 Pfam PF00005 ABC transporter 22 162 1.1E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Pfam PF13193 AMP-binding enzyme C-terminal domain 915 988 6.7E-15 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SUPERFAMILY SSF52777 42 214 1.56E-41 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:3.40.50.1820 1092 1199 2.9E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:3.40.50.1820 1265 1336 2.9E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:3.40.50.980 486 653 3.6E-54 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Pfam PF00975 Thioesterase domain 1133 1325 3.2E-17 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 649 660 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SUPERFAMILY SSF53474 1091 1332 7.13E-37 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Pfam PF00668 Condensation domain 37 332 2.2E-62 T 06-07-2017 IPR001242 Condensation domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Pfam PF00501 AMP-binding enzyme 492 907 1.1E-92 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Pfam PF00550 Phosphopantetheine attachment site 1018 1080 1.5E-14 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1040 1055 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SUPERFAMILY SSF47336 1011 1082 2.88E-17 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 513 931 1.4E-124 T 06-07-2017 IPR010071 Amino acid adenylation domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:2.30.38.10 822 897 9.0E-24 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:1.10.1200.10 1022 1085 1.2E-21 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:3.40.50.980 654 821 1.6E-41 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 Gene3D G3DSA:3.30.300.30 902 1021 2.1E-42 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SUPERFAMILY SSF56801 449 1029 5.36E-157 T 06-07-2017 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SMART SM00823 Phosphopantetheine attachment site 1016 1085 3.3E-5 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT55_RS25740 0b4c3c66b9636d8b527168c5cac78770 1338 SUPERFAMILY SSF52777 215 479 3.22E-54 T 06-07-2017 APT55_RS15500 d666f058b05784cfac95434033a921ae 215 Pfam PF11866 Protein of unknown function (DUF3386) 5 209 7.0E-88 T 06-07-2017 IPR021809 Protein of unknown function DUF3386 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 ProSitePatterns PS01270 Band 7 protein family signature. 130 158 - T 06-07-2017 IPR018080 Band 7/stomatin-like, conserved site APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 SMART SM00244 16 174 6.3E-57 T 06-07-2017 IPR001107 Band 7 domain APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 SUPERFAMILY SSF117892 48 181 7.32E-37 T 06-07-2017 IPR001107 Band 7 domain APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 71 92 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 106 123 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 150 168 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 23 45 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 126 149 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 PRINTS PR00721 Stomatin signature 169 190 2.9E-24 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS01300 02d6ebee5c7d120b3f66dd066edf8c8c 314 Pfam PF01145 SPFH domain / Band 7 family 20 190 2.6E-31 T 06-07-2017 IPR001107 Band 7 domain APT55_RS00580 e354c1ab9a34ee2a82b91e42dd1cb5cd 211 Pfam PF11237 Protein of unknown function (DUF3038) 39 207 9.4E-71 T 06-07-2017 IPR021399 Protein of unknown function DUF3038 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 9 151 1.5E-23 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 Gene3D G3DSA:3.30.420.10 8 154 3.0E-36 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 SUPERFAMILY SSF53098 8 152 3.03E-28 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 109 128 5.1E-16 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 85 101 5.1E-16 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 10 23 5.1E-16 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 141 153 5.1E-16 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS25870 38f557487d460bc343df1a419ea9e95d 162 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 63 79 5.1E-16 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT55_RS30685 c7446a5cb8c235def8fd522d9f99a639 74 Gene3D G3DSA:1.10.443.10 7 53 4.4E-6 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS30685 c7446a5cb8c235def8fd522d9f99a639 74 SUPERFAMILY SSF56349 8 54 2.27E-6 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS12380 5c4489711ec56abae55c91317ba38e86 157 Gene3D G3DSA:3.40.50.150 12 139 2.2E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12380 5c4489711ec56abae55c91317ba38e86 157 Pfam PF13847 Methyltransferase domain 30 139 3.9E-12 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS12380 5c4489711ec56abae55c91317ba38e86 157 SUPERFAMILY SSF53335 12 130 2.46E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15490 3b8978401ab8f9243fc0d97770e7f089 744 Gene3D G3DSA:3.20.110.10 4 76 1.7E-89 T 06-07-2017 IPR027291 Glycoside hydrolase 38/57, N-terminal domain APT55_RS15490 3b8978401ab8f9243fc0d97770e7f089 744 Gene3D G3DSA:3.20.110.10 146 460 1.7E-89 T 06-07-2017 IPR027291 Glycoside hydrolase 38/57, N-terminal domain APT55_RS15490 3b8978401ab8f9243fc0d97770e7f089 744 SUPERFAMILY SSF88713 4 99 8.29E-98 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS15490 3b8978401ab8f9243fc0d97770e7f089 744 SUPERFAMILY SSF88713 143 460 8.29E-98 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS15490 3b8978401ab8f9243fc0d97770e7f089 744 Pfam PF03065 Glycosyl hydrolase family 57 8 472 1.1E-120 T 06-07-2017 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 SUPERFAMILY SSF56784 5 241 7.9E-31 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 TIGRFAM TIGR01485 SPP_plant-cyano: sucrose phosphatase 4 246 1.2E-92 T 06-07-2017 IPR012847 Sucrose phosphatase, plant/cyanobacteria GO:0000287|GO:0005986|GO:0050307 KEGG: 00500+3.1.3.24|MetaCyc: PWY-7238|MetaCyc: PWY-7347 APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 Gene3D G3DSA:3.40.50.1000 5 82 6.4E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 Gene3D G3DSA:3.40.50.1000 160 245 6.4E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 TIGRFAM TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily 7 239 1.6E-46 T 06-07-2017 APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 205 1.7E-30 T 06-07-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 3 246 2.0E-82 T 06-07-2017 IPR006380 Sucrose-phosphatase, N-terminal APT55_RS21750 2127e56e5994fa05324cbb5c9f76ba81 247 Gene3D G3DSA:3.90.1070.10 92 159 6.8E-25 T 06-07-2017 APT55_RS17355 135668fd1e44a71ff88502d545bd38e5 537 Gene3D G3DSA:1.25.40.10 88 254 1.2E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17355 135668fd1e44a71ff88502d545bd38e5 537 SUPERFAMILY SSF48452 158 254 2.95E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS17355 135668fd1e44a71ff88502d545bd38e5 537 Pfam PF01435 Peptidase family M48 323 492 3.4E-27 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS17355 135668fd1e44a71ff88502d545bd38e5 537 Gene3D G3DSA:3.30.2010.10 318 397 7.5E-16 T 06-07-2017 APT55_RS03620 45bfef16821154535f029f5637bbc024 152 SUPERFAMILY SSF49764 22 148 5.76E-36 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS03620 45bfef16821154535f029f5637bbc024 152 Gene3D G3DSA:2.60.40.790 3 148 7.6E-40 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS03620 45bfef16821154535f029f5637bbc024 152 Pfam PF00011 Hsp20/alpha crystallin family 49 147 1.2E-22 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain APT55_RS00305 25740a2297b21251277ae46ca6f5d50a 157 Hamap MF_01353 NAD(P)H-quinone oxidoreductase subunit N [ndhN]. 1 156 40.666 T 06-07-2017 IPR020874 NAD(P)H-quinone oxidoreductase, subunit N GO:0016020|GO:0016655|GO:0055114 APT55_RS00305 25740a2297b21251277ae46ca6f5d50a 157 Pfam PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N 1 153 3.9E-74 T 06-07-2017 IPR020874 NAD(P)H-quinone oxidoreductase, subunit N GO:0016020|GO:0016655|GO:0055114 APT55_RS16410 1b82e30bd74cacf1750f87ed8c9b4f00 327 Pfam PF13460 NAD(P)H-binding 7 191 4.1E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16410 1b82e30bd74cacf1750f87ed8c9b4f00 327 Gene3D G3DSA:3.40.50.720 1 225 1.1E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16410 1b82e30bd74cacf1750f87ed8c9b4f00 327 SUPERFAMILY SSF51735 3 305 6.58E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 Gene3D G3DSA:3.40.50.80 296 433 3.0E-38 T 06-07-2017 APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 SUPERFAMILY SSF52343 295 435 2.1E-35 T 06-07-2017 APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 SUPERFAMILY SSF63380 208 303 1.97E-16 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 Gene3D G3DSA:2.40.30.10 210 295 1.8E-14 T 06-07-2017 APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 Pfam PF08022 FAD-binding domain 232 287 4.3E-6 T 06-07-2017 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 Pfam PF01794 Ferric reductase like transmembrane component 45 160 1.9E-12 T 06-07-2017 IPR013130 Ferric reductase transmembrane component-like domain APT55_RS14200 c79ec968c4aa849b8d870f3eea8cc600 440 Pfam PF00175 Oxidoreductase NAD-binding domain 315 419 1.3E-19 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT55_RS14520 39967efa45ca6c9dea6bf680ec9c0def 435 Gene3D G3DSA:3.40.190.10 162 370 7.2E-59 T 06-07-2017 APT55_RS14520 39967efa45ca6c9dea6bf680ec9c0def 435 Pfam PF01547 Bacterial extracellular solute-binding protein 59 347 1.8E-43 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 APT55_RS14520 39967efa45ca6c9dea6bf680ec9c0def 435 SUPERFAMILY SSF53850 47 412 2.17E-85 T 06-07-2017 APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PIRSF PIRSF000126 1 237 4.4E-58 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 SUPERFAMILY SSF51735 6 227 2.21E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 8.0E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.0E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.0E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.0E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 8.0E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 Gene3D G3DSA:3.40.50.720 7 233 5.0E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 Pfam PF00106 short chain dehydrogenase 9 195 6.8E-57 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS07195 0ef4f22087953c68c17e905fa2b0d6a0 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 196 0.0051 T 06-07-2017 APT55_RS28555 1f8919228a770a659302d6257ad2bfb1 320 Pfam PF02517 CAAX protease self-immunity 164 261 1.6E-9 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 Gene3D G3DSA:1.10.10.10 151 226 1.3E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 SUPERFAMILY SSF46785 151 226 1.12E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 Gene3D G3DSA:2.60.120.10 10 140 3.1E-28 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 Pfam PF13545 Crp-like helix-turn-helix domain 151 224 7.5E-7 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 Pfam PF00027 Cyclic nucleotide-binding domain 31 117 2.3E-19 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 SUPERFAMILY SSF51206 10 139 9.3E-32 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS26670 6b464306f2807d8ceeeedb3f5b62c4ef 230 SMART SM00100 12 131 3.4E-27 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 Pfam PF00005 ABC transporter 22 175 1.6E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 5 245 3.1E-111 T 06-07-2017 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 223 244 8.4E-10 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 Gene3D G3DSA:3.40.50.300 2 244 4.2E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 SMART SM00382 30 222 3.9E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17725 b6f242cb709eaea8289955e0cedb7f2f 251 SUPERFAMILY SSF52540 5 245 7.33E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02865 6b8acbf8a6aca0af4221283ddf91d56f 270 SUPERFAMILY SSF161098 67 248 3.66E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02865 6b8acbf8a6aca0af4221283ddf91d56f 270 Gene3D G3DSA:1.10.3720.10 67 260 1.4E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS02865 6b8acbf8a6aca0af4221283ddf91d56f 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 259 5.2E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04665 2e247c1f1fa34583be12f0455e06300e 387 SUPERFAMILY SSF53756 21 387 6.57E-65 T 06-07-2017 APT55_RS04665 2e247c1f1fa34583be12f0455e06300e 387 Gene3D G3DSA:3.40.50.2000 175 366 1.2E-28 T 06-07-2017 APT55_RS04665 2e247c1f1fa34583be12f0455e06300e 387 Pfam PF00534 Glycosyl transferases group 1 189 366 2.3E-36 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Pfam PF08479 POTRA domain, ShlB-type 238 314 5.3E-11 T 06-07-2017 IPR013686 Polypeptide-transport-associated, ShlB-type APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Gene3D G3DSA:2.40.160.50 421 760 4.9E-32 T 06-07-2017 APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Gene3D G3DSA:3.10.20.310 238 314 2.5E-5 T 06-07-2017 APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Pfam PF07244 Surface antigen variable number repeat 167 234 1.2E-5 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Pfam PF07244 Surface antigen variable number repeat 341 397 3.3E-7 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 APT55_RS05845 02d315f762c6bbe23468626d19bef6f5 775 Pfam PF01103 Surface antigen 429 775 2.9E-61 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 APT55_RS10455 57de8989870603d1183646ab95ceb7af 286 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 93 269 1.1E-38 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS10455 57de8989870603d1183646ab95ceb7af 286 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 93 266 3.9E-54 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS14565 db9499f9b73fc0f3e2aa048a34f2324e 440 Gene3D G3DSA:3.30.465.10 96 202 2.8E-14 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS14565 db9499f9b73fc0f3e2aa048a34f2324e 440 SUPERFAMILY SSF56176 20 202 2.15E-31 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS14565 db9499f9b73fc0f3e2aa048a34f2324e 440 Gene3D G3DSA:3.30.43.10 22 82 8.0E-5 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS14565 db9499f9b73fc0f3e2aa048a34f2324e 440 Pfam PF01565 FAD binding domain 37 172 9.8E-19 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 Gene3D G3DSA:3.40.80.10 6 187 2.4E-37 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 Gene3D G3DSA:1.10.101.10 207 269 2.8E-22 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 27 172 1.2E-10 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 Pfam PF01471 Putative peptidoglycan binding domain 214 267 4.1E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 SMART SM00701 5 166 3.6E-5 T 06-07-2017 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 SUPERFAMILY SSF55846 6 186 2.22E-34 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS14935 d23a799516b6cea5a3aaf346b84cc330 272 SUPERFAMILY SSF47090 207 270 8.63E-20 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Pfam PF00140 Sigma-70 factor, region 1.2 56 86 1.8E-12 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 SUPERFAMILY SSF88659 170 243 2.01E-18 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Gene3D G3DSA:1.10.601.10 45 166 2.2E-61 T 06-07-2017 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 SUPERFAMILY SSF88659 229 326 2.99E-27 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Gene3D G3DSA:1.10.10.10 261 328 3.5E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Pfam PF04545 Sigma-70, region 4 265 318 2.4E-21 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 290 316 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Pfam PF04539 Sigma-70 region 3 176 252 6.5E-21 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Pfam PF04542 Sigma-70 region 2 97 167 2.4E-22 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 318 1.1E-41 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 Gene3D G3DSA:1.10.10.10 170 220 1.6E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 SUPERFAMILY SSF88946 56 164 1.7E-50 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 121 134 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 PRINTS PR00046 Major sigma-70 factor signature 145 153 2.4E-27 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 PRINTS PR00046 Major sigma-70 factor signature 305 316 2.4E-27 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 PRINTS PR00046 Major sigma-70 factor signature 269 281 2.4E-27 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 PRINTS PR00046 Major sigma-70 factor signature 121 134 2.4E-27 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS22720 1d7d47eef260c2280700178e4b04fcd6 329 PRINTS PR00046 Major sigma-70 factor signature 290 305 2.4E-27 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 Pfam PF01061 ABC-2 type transporter 20 232 1.0E-20 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 PIRSF PIRSF006648 2 267 1.5E-28 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 PRINTS PR00164 ABC-2 type transport system membrane protein signature 37 58 4.8E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 PRINTS PR00164 ABC-2 type transport system membrane protein signature 211 230 4.8E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 PRINTS PR00164 ABC-2 type transport system membrane protein signature 191 210 4.8E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS09960 8fd254a76ed24156b6d597fd3d4e6ffb 268 PRINTS PR00164 ABC-2 type transport system membrane protein signature 154 178 4.8E-6 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 Gene3D G3DSA:1.10.10.10 154 212 3.2E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 7.2E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 7.2E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 7.2E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 211 6.1E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 SUPERFAMILY SSF46894 149 213 2.79E-17 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS04290 147a72aa6abde31cbef75d8fdeab2445 219 SMART SM00421 155 212 8.2E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS02725 9de747e8ff0e589840c7374c5eaa2740 402 Pfam PF05935 Arylsulfotransferase (ASST) 42 323 8.5E-20 T 06-07-2017 IPR010262 Arylsulfotransferase APT55_RS02725 9de747e8ff0e589840c7374c5eaa2740 402 Gene3D G3DSA:2.120.10.30 43 351 5.4E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS02725 9de747e8ff0e589840c7374c5eaa2740 402 SUPERFAMILY SSF63829 150 342 2.03E-7 T 06-07-2017 APT55_RS02725 9de747e8ff0e589840c7374c5eaa2740 402 SUPERFAMILY SSF63829 43 123 2.03E-7 T 06-07-2017 APT55_RS03615 7ae2230b79b997ac86b628ffe5d5aff2 344 Gene3D G3DSA:3.40.109.30 23 108 2.3E-16 T 06-07-2017 APT55_RS03615 7ae2230b79b997ac86b628ffe5d5aff2 344 Gene3D G3DSA:3.40.109.10 240 342 1.0E-8 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS03615 7ae2230b79b997ac86b628ffe5d5aff2 344 SUPERFAMILY SSF55469 22 99 2.22E-12 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS03615 7ae2230b79b997ac86b628ffe5d5aff2 344 SUPERFAMILY SSF55469 247 339 1.48E-9 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS03615 7ae2230b79b997ac86b628ffe5d5aff2 344 SUPERFAMILY SSF55469 128 182 1.48E-9 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS14500 3de4394adbd9484eecfbc070e460994a 387 Gene3D G3DSA:3.40.50.2000 185 346 8.3E-29 T 06-07-2017 APT55_RS14500 3de4394adbd9484eecfbc070e460994a 387 Pfam PF00534 Glycosyl transferases group 1 182 347 2.8E-32 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS14500 3de4394adbd9484eecfbc070e460994a 387 SUPERFAMILY SSF53756 24 368 2.34E-61 T 06-07-2017 APT55_RS15585 428d3a989ea444649b20836b4075a865 38 Pfam PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) 1 36 4.3E-24 T 06-07-2017 IPR003686 Photosystem II PsbI GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS15585 428d3a989ea444649b20836b4075a865 38 SUPERFAMILY SSF161041 1 35 6.41E-16 T 06-07-2017 APT55_RS15585 428d3a989ea444649b20836b4075a865 38 Hamap MF_01316 Photosystem II reaction center protein I [psbI]. 1 36 17.452 T 06-07-2017 IPR003686 Photosystem II PsbI GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS21115 b27b7b7df1cb1a58156fe342c8a9c1fe 185 Pfam PF05991 YacP-like NYN domain 10 178 1.4E-49 T 06-07-2017 IPR010298 Protein of unknown function DUF901 APT55_RS31130 2f103201959aa23ffba7dd1222535005 299 Pfam PF02384 N-6 DNA Methylase 114 223 2.0E-14 T 06-07-2017 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APT55_RS31130 2f103201959aa23ffba7dd1222535005 299 Gene3D G3DSA:3.40.50.150 114 222 1.8E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS31130 2f103201959aa23ffba7dd1222535005 299 SUPERFAMILY SSF53335 37 223 4.16E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS31130 2f103201959aa23ffba7dd1222535005 299 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 118 134 2.2E-7 T 06-07-2017 APT55_RS31130 2f103201959aa23ffba7dd1222535005 299 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 152 166 2.2E-7 T 06-07-2017 APT55_RS02680 9eb5de7f288d3855e1b996350005e28f 173 TIGRFAM TIGR01339 phycocy_beta: phycocyanin, beta subunit 4 172 6.9E-89 T 06-07-2017 IPR006247 Phycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS02680 9eb5de7f288d3855e1b996350005e28f 173 SUPERFAMILY SSF46458 3 172 1.82E-57 T 06-07-2017 IPR009050 Globin-like APT55_RS02680 9eb5de7f288d3855e1b996350005e28f 173 Gene3D G3DSA:1.10.490.20 3 171 8.1E-65 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS02680 9eb5de7f288d3855e1b996350005e28f 173 Pfam PF00502 Phycobilisome protein 8 171 5.4E-55 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS02680 9eb5de7f288d3855e1b996350005e28f 173 PIRSF PIRSF000081 2 173 1.1E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS16070 a55830ffd5679e6d7adced1aa0912ae1 216 Pfam PF09335 SNARE associated Golgi protein 61 178 6.8E-15 T 06-07-2017 IPR032816 SNARE associated Golgi protein APT55_RS02765 873f5c8e579a8ed3b5efb4cabb122d97 192 Pfam PF05685 Putative restriction endonuclease 13 180 1.5E-32 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS02765 873f5c8e579a8ed3b5efb4cabb122d97 192 Gene3D G3DSA:3.90.1570.10 6 171 4.3E-20 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS02765 873f5c8e579a8ed3b5efb4cabb122d97 192 SUPERFAMILY SSF52980 5 164 9.65E-21 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 333 37.17 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 Gene3D G3DSA:3.40.50.720 3 141 4.8E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 Gene3D G3DSA:3.30.360.10 142 315 4.7E-78 T 06-07-2017 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 7.7E-35 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 SMART SM00859 6 121 6.0E-44 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 PIRSF PIRSF000148 4 338 9.0E-128 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 319 3.3E-50 T 06-07-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 SUPERFAMILY SSF55347 129 320 3.57E-71 T 06-07-2017 APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 SUPERFAMILY SSF51735 5 157 1.38E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16665 a295d0359adbfcc684f63db95b89f6c5 346 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 334 1.0E-126 T 06-07-2017 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 APT55_RS25505 e0d8c5fa94253e947dcccd26805a34f4 393 Pfam PF00534 Glycosyl transferases group 1 211 359 1.6E-36 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS25505 e0d8c5fa94253e947dcccd26805a34f4 393 SUPERFAMILY SSF53756 24 381 4.54E-73 T 06-07-2017 APT55_RS25505 e0d8c5fa94253e947dcccd26805a34f4 393 Gene3D G3DSA:3.40.50.2000 181 355 8.7E-26 T 06-07-2017 APT55_RS25505 e0d8c5fa94253e947dcccd26805a34f4 393 Pfam PF13439 Glycosyltransferase Family 4 34 192 8.6E-18 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS25230 3e6dab3e9f1ec39dcdf845b8923ebfe4 211 Gene3D G3DSA:3.40.50.2020 4 211 2.2E-77 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS25230 3e6dab3e9f1ec39dcdf845b8923ebfe4 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 5 211 3.8E-81 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT55_RS25230 3e6dab3e9f1ec39dcdf845b8923ebfe4 211 SUPERFAMILY SSF53271 5 209 1.84E-66 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS25230 3e6dab3e9f1ec39dcdf845b8923ebfe4 211 Pfam PF14681 Uracil phosphoribosyltransferase 8 210 2.1E-71 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS25230 3e6dab3e9f1ec39dcdf845b8923ebfe4 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 4 211 43.786 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT55_RS12295 28a3c9625b78fd5a1909c4308f2d0a9f 509 Gene3D G3DSA:1.20.1250.20 329 506 4.5E-15 T 06-07-2017 APT55_RS12295 28a3c9625b78fd5a1909c4308f2d0a9f 509 Gene3D G3DSA:1.20.1250.20 76 300 8.7E-11 T 06-07-2017 APT55_RS12295 28a3c9625b78fd5a1909c4308f2d0a9f 509 SUPERFAMILY SSF103473 87 505 5.49E-38 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS12295 28a3c9625b78fd5a1909c4308f2d0a9f 509 Pfam PF05977 Transmembrane secretion effector 81 493 7.6E-17 T 06-07-2017 IPR010290 Transmembrane secretion effector APT55_RS17525 f571546073e7397fc7776de4cab16e8e 106 Pfam PF13190 PDGLE domain 19 99 1.7E-17 T 06-07-2017 IPR025937 PDGLE domain APT55_RS17525 f571546073e7397fc7776de4cab16e8e 106 ProDom PD486863 PRECURSOR CBIM SIGNAL COBALT MEMBRANE VITAMIN B12 BIOSYNTHESIS COBALAMIN ABC-TYPE 28 102 1.0E-23 T 06-07-2017 APT55_RS23925 173a6f6137cc94222cdcda56ecaf9c83 353 Pfam PF14249 Tocopherol cyclase 22 338 1.4E-147 T 06-07-2017 IPR025893 Tocopherol cyclase GO:0009976 APT55_RS08235 1ff3883ca020b0c82c2a843843107149 124 SUPERFAMILY SSF52091 17 118 2.75E-23 T 06-07-2017 IPR002645 STAS domain APT55_RS08235 1ff3883ca020b0c82c2a843843107149 124 Gene3D G3DSA:3.30.750.24 18 121 5.9E-26 T 06-07-2017 IPR002645 STAS domain APT55_RS08235 1ff3883ca020b0c82c2a843843107149 124 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 24 114 6.6E-19 T 06-07-2017 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT55_RS08235 1ff3883ca020b0c82c2a843843107149 124 Pfam PF01740 STAS domain 24 116 2.3E-15 T 06-07-2017 IPR002645 STAS domain APT55_RS26340 e96da2689e6431c4a79053e680deeab6 281 Pfam PF00793 DAHP synthetase I family 22 261 5.9E-73 T 06-07-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS26340 e96da2689e6431c4a79053e680deeab6 281 SUPERFAMILY SSF51569 20 271 4.21E-94 T 06-07-2017 APT55_RS26340 e96da2689e6431c4a79053e680deeab6 281 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 13 263 8.8E-111 T 06-07-2017 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT55_RS26340 e96da2689e6431c4a79053e680deeab6 281 Gene3D G3DSA:3.20.20.70 13 271 4.7E-96 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS02570 956d8191fbe6fe4e165cbcc38392409b 411 Pfam PF07690 Major Facilitator Superfamily 18 269 1.1E-33 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS02570 956d8191fbe6fe4e165cbcc38392409b 411 SUPERFAMILY SSF103473 12 386 1.96E-67 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS02570 956d8191fbe6fe4e165cbcc38392409b 411 Gene3D G3DSA:1.20.1250.20 12 199 4.8E-38 T 06-07-2017 APT55_RS02570 956d8191fbe6fe4e165cbcc38392409b 411 Gene3D G3DSA:1.20.1250.20 214 386 2.9E-30 T 06-07-2017 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 Gene3D G3DSA:3.30.565.10 284 449 1.9E-12 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 Gene3D G3DSA:1.10.287.130 180 211 4.9E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 Gene3D G3DSA:1.10.287.130 249 275 4.9E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 185 275 2.0E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 SUPERFAMILY SSF47384 250 280 3.92E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 SUPERFAMILY SSF47384 179 220 3.92E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07955 54f00c1a4ecaa42c3afb9df5cb600224 450 SUPERFAMILY SSF55874 275 449 4.3E-12 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 Pfam PF00731 AIR carboxylase 6 150 3.7E-69 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 157 33.18 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 SMART SM01001 4 153 6.5E-104 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 SUPERFAMILY SSF52255 5 170 2.35E-70 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 PIRSF PIRSF001338 1 164 6.0E-73 T 06-07-2017 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 160 1.4E-70 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS23630 53891cc309092d18a205ff84fbc8d9b2 172 Gene3D G3DSA:3.40.50.7700 2 160 5.1E-78 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS07770 765bf5453b2cea2ad96c5642a3501025 150 Pfam PF01850 PIN domain 4 121 4.3E-7 T 06-07-2017 IPR002716 PIN domain APT55_RS07770 765bf5453b2cea2ad96c5642a3501025 150 Gene3D G3DSA:3.40.50.1010 2 134 1.8E-5 T 06-07-2017 IPR029060 PIN domain-like APT55_RS07770 765bf5453b2cea2ad96c5642a3501025 150 SUPERFAMILY SSF88723 3 137 7.01E-13 T 06-07-2017 IPR029060 PIN domain-like APT55_RS23580 afc0b39a3641b46d3adb4d6dbe715fb2 154 SUPERFAMILY SSF51182 17 151 6.68E-24 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS23580 afc0b39a3641b46d3adb4d6dbe715fb2 154 Gene3D G3DSA:2.60.120.10 4 120 4.3E-22 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS23580 afc0b39a3641b46d3adb4d6dbe715fb2 154 Pfam PF07883 Cupin domain 48 114 4.9E-15 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS00885 73034c7551c519c3505f10306afa075a 314 SUPERFAMILY SSF52266 29 276 1.03E-18 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00885 73034c7551c519c3505f10306afa075a 314 Gene3D G3DSA:3.40.50.1110 14 281 4.8E-68 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00885 73034c7551c519c3505f10306afa075a 314 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 267 7.1E-13 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 Gene3D G3DSA:3.40.50.620 1 132 4.7E-25 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 Gene3D G3DSA:3.40.50.620 139 277 9.6E-25 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 SUPERFAMILY SSF52402 141 278 2.68E-22 T 06-07-2017 APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 SUPERFAMILY SSF52402 3 136 5.23E-25 T 06-07-2017 APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 Pfam PF00582 Universal stress protein family 1 132 2.8E-20 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 Pfam PF00582 Universal stress protein family 141 278 4.3E-24 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 PRINTS PR01438 Universal stress protein signature 110 132 9.8E-9 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 PRINTS PR01438 Universal stress protein signature 92 104 9.8E-9 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS22490 78e2cb556388ff4c46c3c50902ee32c1 281 PRINTS PR01438 Universal stress protein signature 2 20 9.8E-9 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS08675 be523c4bc225eddb8a22255eb9fc097d 152 Pfam PF00011 Hsp20/alpha crystallin family 40 129 2.5E-21 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain APT55_RS08675 be523c4bc225eddb8a22255eb9fc097d 152 Gene3D G3DSA:2.60.40.790 6 133 2.7E-30 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS08675 be523c4bc225eddb8a22255eb9fc097d 152 SUPERFAMILY SSF49764 11 134 2.88E-31 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00069 Protein kinase domain 44 280 2.0E-42 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 50 73 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 460 496 4.9E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 590 627 2.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 546 586 0.0041 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 374 409 1.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 324 367 1.0E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 508 536 0.057 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Pfam PF00400 WD domain, G-beta repeat 413 452 3.8E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 180 192 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 354 368 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Gene3D G3DSA:3.30.200.20 40 125 7.7E-19 T 06-07-2017 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00220 44 312 4.5E-51 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SUPERFAMILY SSF50978 323 628 1.13E-88 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 440 454 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SUPERFAMILY SSF56112 38 310 8.09E-60 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 322 367 2.3E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 412 453 1.6E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 541 586 0.0016 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 457 496 2.6E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 370 409 3.9E-13 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 589 628 1.1E-12 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 SMART SM00320 499 538 0.021 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Gene3D G3DSA:1.10.510.10 126 307 1.4E-44 T 06-07-2017 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 PRINTS PR00320 G protein beta WD-40 repeat signature 354 368 2.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 PRINTS PR00320 G protein beta WD-40 repeat signature 440 454 2.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 PRINTS PR00320 G protein beta WD-40 repeat signature 615 629 2.3E-8 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Gene3D G3DSA:2.130.10.10 558 629 1.7E-24 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS27515 3c81bf366b4c0435bcc6b3256a6f420a 632 Gene3D G3DSA:2.130.10.10 323 554 5.5E-72 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS18320 5463a51b33e58445d96e0afb022e0eef 193 Gene3D G3DSA:2.70.40.10 1 186 3.2E-51 T 06-07-2017 IPR029054 dUTPase-like APT55_RS18320 5463a51b33e58445d96e0afb022e0eef 193 SUPERFAMILY SSF51283 1 186 1.83E-37 T 06-07-2017 IPR029054 dUTPase-like APT55_RS18320 5463a51b33e58445d96e0afb022e0eef 193 Pfam PF00692 dUTPase 87 166 6.7E-5 T 06-07-2017 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 APT55_RS18320 5463a51b33e58445d96e0afb022e0eef 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 189 8.3E-35 T 06-07-2017 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 TIGRFAM TIGR03043 PS_II_psbZ: photosystem II core protein PsbZ 4 61 2.4E-28 T 06-07-2017 IPR002644 Photosystem II PsbZ, reaction centre GO:0009523|GO:0009539|GO:0015979|GO:0042549 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 SUPERFAMILY SSF161055 1 61 1.57E-22 T 06-07-2017 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 ProDom PD004770 PHOTOSYSTEM II CENTER REACTION PHOTOSYNTHESIS TRANSMEMBRANE THYLAKOID CHLOROPLAST Z PLASTID 4 55 4.0E-17 T 06-07-2017 IPR002644 Photosystem II PsbZ, reaction centre GO:0009523|GO:0009539|GO:0015979|GO:0042549 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 Gene3D G3DSA:1.10.287.740 1 61 9.9E-28 T 06-07-2017 IPR002644 Photosystem II PsbZ, reaction centre GO:0009523|GO:0009539|GO:0015979|GO:0042549 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 Pfam PF01737 YCF9 4 61 2.4E-29 T 06-07-2017 IPR002644 Photosystem II PsbZ, reaction centre GO:0009523|GO:0009539|GO:0015979|GO:0042549 APT55_RS02525 8d6053fd3e8068bfa84cb4e038dc4c3a 62 Hamap MF_00644 Photosystem II reaction center protein Z [psbZ]. 1 62 18.072 T 06-07-2017 IPR002644 Photosystem II PsbZ, reaction centre GO:0009523|GO:0009539|GO:0015979|GO:0042549 APT55_RS14350 2fcf150bb7cd17286c63d5063d93b97e 317 Gene3D G3DSA:1.10.3720.10 37 306 1.5E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14350 2fcf150bb7cd17286c63d5063d93b97e 317 SUPERFAMILY SSF161098 52 305 5.7E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14350 2fcf150bb7cd17286c63d5063d93b97e 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 142 307 2.3E-6 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS21945 f914131afca22d8276f2949a7d6b3f01 209 SUPERFAMILY SSF144091 13 188 1.83E-24 T 06-07-2017 APT55_RS21945 f914131afca22d8276f2949a7d6b3f01 209 Gene3D G3DSA:1.20.1540.10 22 187 6.7E-15 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS21945 f914131afca22d8276f2949a7d6b3f01 209 Pfam PF01694 Rhomboid family 53 187 5.1E-20 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS22025 38045aae949134d98664181e07fb0018 103 ProSitePatterns PS00681 Chaperonins cpn10 signature. 11 35 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 Hamap MF_00580 10 kDa chaperonin [groS]. 10 103 25.92 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 Pfam PF00166 Chaperonin 10 Kd subunit 11 102 7.1E-36 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 SMART SM00883 10 102 2.4E-52 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 Gene3D G3DSA:2.30.33.40 11 102 7.4E-38 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 SUPERFAMILY SSF50129 10 102 4.43E-34 T 06-07-2017 IPR011032 GroES-like APT55_RS22025 38045aae949134d98664181e07fb0018 103 PRINTS PR00297 10kDa chaperonin signature 33 54 7.8E-30 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 PRINTS PR00297 10kDa chaperonin signature 11 26 7.8E-30 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 PRINTS PR00297 10kDa chaperonin signature 68 80 7.8E-30 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS22025 38045aae949134d98664181e07fb0018 103 PRINTS PR00297 10kDa chaperonin signature 89 102 7.8E-30 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SUPERFAMILY SSF52540 779 987 2.51E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Gene3D G3DSA:3.40.50.300 796 953 1.3E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SMART SM00487 597 787 3.6E-33 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Pfam PF00271 Helicase conserved C-terminal domain 803 907 5.5E-18 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SMART SM00490 823 907 1.6E-20 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Gene3D G3DSA:3.40.50.300 586 783 5.9E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Pfam PF03461 TRCF domain 1001 1082 6.7E-19 T 06-07-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SMART SM01058 477 573 1.7E-36 T 06-07-2017 IPR003711 CarD-like/TRCF domain APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SUPERFAMILY SSF143517 985 1140 1.57E-33 T 06-07-2017 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Pfam PF00270 DEAD/DEAH box helicase 622 761 6.4E-17 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SUPERFAMILY SSF52540 23 339 2.54E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SUPERFAMILY SSF52540 540 781 2.1E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 158 1074 0.0 T 06-07-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SUPERFAMILY SSF141259 471 545 2.22E-17 T 06-07-2017 IPR003711 CarD-like/TRCF domain APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Pfam PF02559 CarD-like/TRCF domain 478 572 5.6E-24 T 06-07-2017 IPR003711 CarD-like/TRCF domain APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 38 1109 27.793 T 06-07-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 SMART SM00982 1000 1097 1.5E-30 T 06-07-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APT55_RS20095 c6198665629af3a8b05f4aee31092962 1152 Gene3D G3DSA:3.30.2060.10 141 218 1.1E-14 T 06-07-2017 APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 SMART SM00849 106 265 2.1E-14 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 SUPERFAMILY SSF54862 20 73 4.05E-6 T 06-07-2017 APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 18 72 4.1E-16 T 06-07-2017 APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 Gene3D G3DSA:3.60.15.10 85 283 2.3E-73 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 Gene3D G3DSA:3.30.70.20 16 73 1.8E-7 T 06-07-2017 APT55_RS10555 26229d8c2ed702ecffdec4645941fda1 298 SUPERFAMILY SSF56281 86 281 3.61E-48 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 SUPERFAMILY SSF53474 6 286 2.27E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 1.3E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 1.3E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 1.3E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 1.3E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 Gene3D G3DSA:3.40.50.1820 4 287 1.1E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26290 7d6d496432458405248e58eb43a869bd 290 Pfam PF12697 Alpha/beta hydrolase family 35 279 4.1E-19 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS31845 220a87a338698ca3743a10d27d4c3ea1 306 Gene3D G3DSA:3.40.30.10 179 285 1.3E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS31845 220a87a338698ca3743a10d27d4c3ea1 306 SUPERFAMILY SSF52833 183 286 1.23E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS26110 462ec422a242d8f55ba722f551b5fbd2 266 SUPERFAMILY SSF53335 26 221 9.58E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26110 462ec422a242d8f55ba722f551b5fbd2 266 Gene3D G3DSA:3.40.50.150 14 168 4.9E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS26110 462ec422a242d8f55ba722f551b5fbd2 266 Pfam PF08241 Methyltransferase domain 55 150 7.3E-25 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS26925 15bac891957a1023be7485de6000e259 120 Pfam PF02152 Dihydroneopterin aldolase 5 107 2.3E-28 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS26925 15bac891957a1023be7485de6000e259 120 SMART SM00905 5 117 5.4E-37 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS26925 15bac891957a1023be7485de6000e259 120 TIGRFAM TIGR00526 folB_dom: FolB domain 3 119 3.5E-24 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS26925 15bac891957a1023be7485de6000e259 120 SUPERFAMILY SSF55620 1 118 3.17E-32 T 06-07-2017 APT55_RS26925 15bac891957a1023be7485de6000e259 120 Gene3D G3DSA:3.30.1130.10 2 118 7.5E-34 T 06-07-2017 APT55_RS26925 15bac891957a1023be7485de6000e259 120 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 5 115 1.5E-24 T 06-07-2017 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 Gene3D G3DSA:3.40.50.1110 139 208 8.1E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 Gene3D G3DSA:3.40.50.1110 413 439 8.1E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 Gene3D G3DSA:3.40.50.1110 2 38 8.1E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 Gene3D G3DSA:3.40.50.1110 315 376 8.1E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 Gene3D G3DSA:3.40.50.1110 240 274 8.1E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 SUPERFAMILY SSF52266 146 208 5.5E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 SUPERFAMILY SSF52266 328 376 5.5E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 SUPERFAMILY SSF52266 413 439 5.5E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 SUPERFAMILY SSF52266 2 39 5.5E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27955 dae5054bdf2cabcb97fdf39dd1feee54 506 SUPERFAMILY SSF52266 243 274 5.5E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 SUPERFAMILY SSF90002 227 321 1.57E-27 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 Gene3D G3DSA:3.30.1220.10 218 321 9.8E-41 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 SUPERFAMILY SSF52540 10 209 3.48E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 SMART SM00833 227 321 3.6E-11 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 Gene3D G3DSA:3.40.50.300 8 204 9.6E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 228 321 4.6E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS07260 965ce3f88c23a2a7e7d7ba9f1b67b950 322 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 185 2.9E-61 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Pfam PF00005 ABC transporter 833 982 1.2E-38 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 SUPERFAMILY SSF90123 486 801 1.7E-66 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Gene3D G3DSA:3.90.70.10 351 472 1.6E-25 T 06-07-2017 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 SUPERFAMILY SSF51206 71 159 2.62E-14 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 ProSitePatterns PS00211 ABC transporters family signature. 954 968 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Pfam PF00664 ABC transporter transmembrane region 502 769 1.2E-41 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 SUPERFAMILY SSF52540 804 1052 2.15E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Gene3D G3DSA:2.60.120.10 71 160 1.7E-11 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 SMART SM00382 842 1028 1.7E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Gene3D G3DSA:3.40.50.300 815 1046 8.3E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Pfam PF00027 Cyclic nucleotide-binding domain 71 144 8.9E-9 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Gene3D G3DSA:1.20.1560.10 486 799 7.6E-80 T 06-07-2017 APT55_RS18750 6c5a0c914caa9e0b53248bfa93198fa6 1055 Pfam PF03412 Peptidase C39 family 344 473 3.5E-40 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 SUPERFAMILY SSF56024 114 197 4.71E-8 T 06-07-2017 APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 Gene3D G3DSA:3.30.870.10 115 197 6.2E-7 T 06-07-2017 APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 Gene3D G3DSA:3.40.50.300 336 398 2.0E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 Gene3D G3DSA:3.40.50.300 247 323 2.7E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 Pfam PF13091 PLD-like domain 18 195 1.4E-16 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 SUPERFAMILY SSF52540 209 459 3.4E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31735 1bd2819d0514484a8284133f37b6ade7 673 SMART SM00487 251 418 5.2E-8 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 Gene3D G3DSA:3.40.605.10 375 415 2.7E-101 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 Gene3D G3DSA:3.40.605.10 9 225 2.7E-101 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 06-07-2017 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 17 406 1.4E-167 T 06-07-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 SUPERFAMILY SSF53720 11 416 3.14E-114 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 Pfam PF00171 Aldehyde dehydrogenase family 13 288 1.2E-12 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 Gene3D G3DSA:3.40.309.10 227 374 2.4E-41 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 416 38.128 T 06-07-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT55_RS03800 fdfe27cd8f6dcecd6811e542514b61b9 432 PIRSF PIRSF000151 2 417 1.1E-171 T 06-07-2017 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APT55_RS02880 cedf2a96cd8fd74f789c47ffd04e3403 187 SUPERFAMILY SSF52218 4 170 5.0E-33 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS02880 cedf2a96cd8fd74f789c47ffd04e3403 187 Pfam PF03358 NADPH-dependent FMN reductase 4 144 1.5E-32 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT55_RS02880 cedf2a96cd8fd74f789c47ffd04e3403 187 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 4 171 3.5E-71 T 06-07-2017 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 APT55_RS02880 cedf2a96cd8fd74f789c47ffd04e3403 187 Gene3D G3DSA:3.40.50.360 1 175 3.9E-34 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS17815 9d63e75aa413ec3416b7fe3af8bebed6 303 Gene3D G3DSA:3.30.470.20 158 299 1.9E-9 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS17815 9d63e75aa413ec3416b7fe3af8bebed6 303 SUPERFAMILY SSF56059 112 299 2.55E-17 T 06-07-2017 APT55_RS19260 37a6fc2b4e20713d32776ebdce8b020c 180 SUPERFAMILY SSF55729 3 177 5.42E-39 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS19260 37a6fc2b4e20713d32776ebdce8b020c 180 Gene3D G3DSA:3.40.630.30 5 177 1.9E-42 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS19260 37a6fc2b4e20713d32776ebdce8b020c 180 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 2.2E-24 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 231 1.6E-77 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3 229 1.6E-66 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 107 114 - T 06-07-2017 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 SUPERFAMILY SSF53448 2 230 7.66E-57 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 Gene3D G3DSA:3.90.550.10 3 232 7.4E-67 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00780 fd72292a0466640dbe3278e52db80c77 233 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 1 232 26.716 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 Gene3D G3DSA:2.120.10.30 9 286 1.7E-83 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 20 264 4.2E-83 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 159 179 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 204 221 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 136 158 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 21 38 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 97 118 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 246 264 5.4E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS09825 b9e202113d274f3f14d43c79ad134c8a 303 SUPERFAMILY SSF63829 8 267 2.84E-63 T 06-07-2017 APT55_RS21995 a337a21529c368508ab545400e43a3a8 202 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 57 202 2.6E-58 T 06-07-2017 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 APT55_RS21995 a337a21529c368508ab545400e43a3a8 202 SUPERFAMILY SSF47240 11 202 1.47E-74 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS21995 a337a21529c368508ab545400e43a3a8 202 Gene3D G3DSA:1.20.1260.10 10 202 1.9E-73 T 06-07-2017 IPR012347 Ferritin-related APT55_RS21995 a337a21529c368508ab545400e43a3a8 202 PIRSF PIRSF020736 2 202 5.3E-82 T 06-07-2017 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 APT55_RS18705 d1aa128d46d9beca9d5e9f3ff3d08379 205 Gene3D G3DSA:3.40.50.1820 4 196 1.4E-34 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS18705 d1aa128d46d9beca9d5e9f3ff3d08379 205 SUPERFAMILY SSF53474 4 168 2.49E-36 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS18705 d1aa128d46d9beca9d5e9f3ff3d08379 205 Pfam PF00561 alpha/beta hydrolase fold 4 114 2.1E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS03990 d80ca06f8baf7c0136e7d78ab411f930 260 Gene3D G3DSA:3.40.50.300 3 239 6.6E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03990 d80ca06f8baf7c0136e7d78ab411f930 260 SUPERFAMILY SSF52540 3 237 2.96E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03990 d80ca06f8baf7c0136e7d78ab411f930 260 SMART SM00382 30 226 1.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03990 d80ca06f8baf7c0136e7d78ab411f930 260 Pfam PF00005 ABC transporter 21 175 5.4E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS03990 d80ca06f8baf7c0136e7d78ab411f930 260 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS24505 579fb16e3d7eb9b058a9cdfcee63bea3 187 TIGRFAM TIGR04376 TIGR04376: TIGR04376 family protein 2 185 6.5E-73 T 06-07-2017 IPR030816 Conserved hypothetical protein CHP04376 APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 Pfam PF00248 Aldo/keto reductase family 15 309 1.5E-86 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 PRINTS PR00069 Aldo-keto reductase signature 134 151 1.9E-5 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 PRINTS PR00069 Aldo-keto reductase signature 40 64 1.9E-5 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 PRINTS PR00069 Aldo-keto reductase signature 103 121 1.9E-5 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 SUPERFAMILY SSF51430 1 311 4.19E-100 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS14420 6ae2ac54cf807a5d36b375320512e0b2 319 Gene3D G3DSA:3.20.20.100 9 312 3.5E-104 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 PIRSF PIRSF005624 3 209 2.5E-47 T 06-07-2017 APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 Gene3D G3DSA:3.40.50.300 9 200 4.9E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 Hamap MF_01389 Urease accessory protein UreG [ureG]. 8 206 47.653 T 06-07-2017 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 SUPERFAMILY SSF52540 7 200 1.11E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 10 205 1.7E-107 T 06-07-2017 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 APT55_RS17705 323056f9449cc4558940fa082b322e6e 210 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 182 4.2E-37 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Gene3D G3DSA:2.10.240.10 235 268 5.5E-10 T 06-07-2017 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Gene3D G3DSA:2.40.30.10 9 91 2.5E-14 T 06-07-2017 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Pfam PF00175 Oxidoreductase NAD-binding domain 114 216 8.6E-17 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 PIRSF PIRSF006816 5 272 5.5E-67 T 06-07-2017 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 SUPERFAMILY SSF63380 6 102 1.79E-19 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 PRINTS PR00406 Cytochrome B5 reductase signature 151 162 2.7E-8 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 PRINTS PR00406 Cytochrome B5 reductase signature 203 211 2.7E-8 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 PRINTS PR00406 Cytochrome B5 reductase signature 89 103 2.7E-8 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 PRINTS PR00406 Cytochrome B5 reductase signature 113 132 2.7E-8 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Gene3D G3DSA:3.40.50.80 92 231 9.4E-34 T 06-07-2017 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 SUPERFAMILY SSF52343 97 267 3.14E-32 T 06-07-2017 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Pfam PF00970 Oxidoreductase FAD-binding domain 13 100 6.2E-5 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 APT55_RS03725 f465b1168a87ad870ed4c97e59048e43 276 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 235 267 8.7E-9 T 06-07-2017 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain APT55_RS16055 0bce7f550b19f86acbbdcfa1514b2406 299 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 58 109 2.0E-14 T 06-07-2017 IPR027805 Transposase, Helix-turn-helix domain APT55_RS16055 0bce7f550b19f86acbbdcfa1514b2406 299 Pfam PF13359 DDE superfamily endonuclease 137 293 6.0E-26 T 06-07-2017 IPR027806 Harbinger transposase-derived nuclease domain APT55_RS30850 0bce7f550b19f86acbbdcfa1514b2406 299 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 58 109 2.0E-14 T 06-07-2017 IPR027805 Transposase, Helix-turn-helix domain APT55_RS30850 0bce7f550b19f86acbbdcfa1514b2406 299 Pfam PF13359 DDE superfamily endonuclease 137 293 6.0E-26 T 06-07-2017 IPR027806 Harbinger transposase-derived nuclease domain APT55_RS04465 eea4d34b94681968c68782958350bce4 328 PIRSF PIRSF000443 1 328 2.3E-67 T 06-07-2017 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT55_RS04465 eea4d34b94681968c68782958350bce4 328 SUPERFAMILY SSF53474 4 304 4.09E-71 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04465 eea4d34b94681968c68782958350bce4 328 Gene3D G3DSA:3.40.50.1820 19 303 1.5E-28 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04465 eea4d34b94681968c68782958350bce4 328 Pfam PF00561 alpha/beta hydrolase fold 63 293 5.5E-15 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS28155 29f79f711e724cc98d6864efb0f17f0d 352 SUPERFAMILY SSF55961 126 341 1.7E-22 T 06-07-2017 APT55_RS28155 29f79f711e724cc98d6864efb0f17f0d 352 SUPERFAMILY SSF50022 22 137 2.88E-32 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS28155 29f79f711e724cc98d6864efb0f17f0d 352 Pfam PF00355 Rieske [2Fe-2S] domain 27 104 3.9E-16 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS28155 29f79f711e724cc98d6864efb0f17f0d 352 Gene3D G3DSA:2.102.10.10 25 138 7.8E-30 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 TIGRFAM TIGR00115 tig: trigger factor 12 429 1.8E-117 T 06-07-2017 IPR005215 Trigger factor GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Pfam PF05697 Bacterial trigger factor protein (TF) 1 150 1.6E-35 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 SUPERFAMILY SSF54534 107 255 5.89E-23 T 06-07-2017 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 277 429 7.9E-28 T 06-07-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Hamap MF_00303 Trigger factor [tig]. 1 435 21.337 T 06-07-2017 IPR005215 Trigger factor GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 PIRSF PIRSF003095 1 457 3.1E-121 T 06-07-2017 IPR005215 Trigger factor GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Gene3D G3DSA:1.10.3120.10 229 400 3.9E-50 T 06-07-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 SUPERFAMILY SSF109998 262 438 1.03E-34 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Gene3D G3DSA:3.10.50.40 162 228 3.0E-5 T 06-07-2017 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 164 251 2.0E-11 T 06-07-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 SUPERFAMILY SSF102735 1 137 4.19E-30 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 APT55_RS16670 cce335d00e3b16eeeffb0ca3c2dfbcaf 468 Gene3D G3DSA:3.30.70.1050 1 125 2.3E-29 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 APT55_RS20985 6e5a6c2db8f79c53601dbf18f397eaf6 125 Pfam PF01541 GIY-YIG catalytic domain 42 118 1.9E-10 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS20985 6e5a6c2db8f79c53601dbf18f397eaf6 125 SUPERFAMILY SSF82771 41 120 3.14E-8 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS20985 6e5a6c2db8f79c53601dbf18f397eaf6 125 Gene3D G3DSA:3.40.1440.10 42 68 7.7E-4 T 06-07-2017 IPR027299 GIY-YIG domain APT55_RS20985 6e5a6c2db8f79c53601dbf18f397eaf6 125 SMART SM00465 40 123 9.0E-4 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS14015 11af2894dbd0db135730894c08df20f3 146 Gene3D G3DSA:3.40.1350.10 25 135 7.3E-36 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS14015 11af2894dbd0db135730894c08df20f3 146 SUPERFAMILY SSF52980 20 130 1.11E-19 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS14015 11af2894dbd0db135730894c08df20f3 146 Pfam PF02021 Uncharacterised protein family UPF0102 25 118 3.8E-27 T 06-07-2017 IPR003509 Uncharacterised protein family UPF0102 APT55_RS14015 11af2894dbd0db135730894c08df20f3 146 Hamap MF_00048 UPF0102 protein YraN [yraN]. 18 131 22.264 T 06-07-2017 IPR003509 Uncharacterised protein family UPF0102 APT55_RS14015 11af2894dbd0db135730894c08df20f3 146 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 18 123 1.2E-30 T 06-07-2017 IPR003509 Uncharacterised protein family UPF0102 APT55_RS09830 8440bb6cc6ae8ec97d1a4984831a88c1 307 Pfam PF03631 Virulence factor BrkB 27 296 2.0E-52 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS09830 8440bb6cc6ae8ec97d1a4984831a88c1 307 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 24 293 5.5E-21 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS09830 8440bb6cc6ae8ec97d1a4984831a88c1 307 PIRSF PIRSF035875 3 307 8.4E-56 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00412 Epoxide hydrolase signature 140 158 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00412 Epoxide hydrolase signature 369 391 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00412 Epoxide hydrolase signature 217 230 3.6E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 Gene3D G3DSA:3.40.50.1820 114 393 1.2E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 Pfam PF12697 Alpha/beta hydrolase family 136 386 7.9E-25 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 SUPERFAMILY SSF53474 117 392 1.07E-61 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00111 Alpha/beta hydrolase fold signature 203 216 1.0E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00111 Alpha/beta hydrolase fold signature 159 174 1.0E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS25900 769fb74685ca61f63ec05df93002a507 410 PRINTS PR00111 Alpha/beta hydrolase fold signature 217 230 1.0E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS30975 340829c755fa8a7f71814721cff74520 297 Gene3D G3DSA:1.20.120.620 23 122 2.7E-12 T 06-07-2017 APT55_RS30975 340829c755fa8a7f71814721cff74520 297 SUPERFAMILY SSF55785 133 231 6.63E-11 T 06-07-2017 IPR000014 PAS domain APT55_RS30975 340829c755fa8a7f71814721cff74520 297 Pfam PF13493 Domain of unknown function (DUF4118) 26 128 1.0E-17 T 06-07-2017 IPR025201 Sensor protein KdpD, transmembrane domain APT55_RS30975 340829c755fa8a7f71814721cff74520 297 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 136 253 1.6E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS30975 340829c755fa8a7f71814721cff74520 297 Gene3D G3DSA:3.30.450.20 134 230 1.6E-9 T 06-07-2017 APT55_RS27980 300c04321518d379fa10e4f666332211 361 Pfam PF10509 Galactokinase galactose-binding signature 9 55 9.9E-20 T 06-07-2017 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PIRSF PIRSF000530 2 356 2.1E-103 T 06-07-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 Gene3D G3DSA:3.30.230.10 7 200 3.1E-66 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS27980 300c04321518d379fa10e4f666332211 361 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 114 125 - T 06-07-2017 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 APT55_RS27980 300c04321518d379fa10e4f666332211 361 Pfam PF08544 GHMP kinases C terminal 274 347 5.6E-12 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS27980 300c04321518d379fa10e4f666332211 361 Gene3D G3DSA:3.30.70.890 201 352 1.0E-47 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00473 Galactokinase signature 105 123 2.1E-22 T 06-07-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00473 Galactokinase signature 25 43 2.1E-22 T 06-07-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00473 Galactokinase signature 253 267 2.1E-22 T 06-07-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 TIGRFAM TIGR00131 gal_kin: galactokinase 7 349 7.8E-89 T 06-07-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 Pfam PF00288 GHMP kinases N terminal domain 108 172 1.2E-15 T 06-07-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 APT55_RS27980 300c04321518d379fa10e4f666332211 361 SUPERFAMILY SSF54211 8 196 4.25E-58 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00959 Mevalonate kinase family signature 155 174 3.7E-40 T 06-07-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00959 Mevalonate kinase family signature 112 134 3.7E-40 T 06-07-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00959 Mevalonate kinase family signature 314 331 3.7E-40 T 06-07-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 PRINTS PR00959 Mevalonate kinase family signature 23 47 3.7E-40 T 06-07-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APT55_RS27980 300c04321518d379fa10e4f666332211 361 SUPERFAMILY SSF55060 199 348 1.49E-40 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain APT55_RS01095 f183e471c36750a720cb24277202815a 470 SUPERFAMILY SSF88713 37 451 2.72E-63 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS19975 8f90a3505b9b663d3ec5315739097083 144 Pfam PF01042 Endoribonuclease L-PSP 19 89 6.7E-15 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family APT55_RS19975 8f90a3505b9b663d3ec5315739097083 144 Gene3D G3DSA:3.30.1330.40 2 142 2.6E-37 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS19975 8f90a3505b9b663d3ec5315739097083 144 SUPERFAMILY SSF55298 9 142 2.2E-30 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Gene3D G3DSA:3.90.700.10 228 336 4.1E-38 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 PIRSF PIRSF000171 1 538 3.2E-32 T 06-07-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Pfam PF02910 Fumarate reductase flavoprotein C-term 422 532 1.0E-14 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Gene3D G3DSA:3.50.50.60 3 227 1.4E-92 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Gene3D G3DSA:3.50.50.60 337 388 1.4E-92 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 SUPERFAMILY SSF46977 416 535 5.63E-29 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 SUPERFAMILY SSF56425 222 341 2.69E-41 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 5 518 8.0E-192 T 06-07-2017 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 343 365 5.3E-6 T 06-07-2017 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.3E-6 T 06-07-2017 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 SUPERFAMILY SSF51905 344 388 1.2E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 SUPERFAMILY SSF51905 6 248 1.2E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Pfam PF00890 FAD binding domain 7 380 1.8E-94 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS09455 3b029ca5b4240834d6a1a4a7f8ea18e9 542 Gene3D G3DSA:1.20.58.100 415 532 3.2E-29 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 Gene3D G3DSA:3.80.30.20 146 373 2.0E-72 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 Gene3D G3DSA:2.40.50.140 376 437 1.9E-18 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 434 1.4E-137 T 06-07-2017 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 SMART SM00729 144 361 1.7E-52 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 5 436 64.307 T 06-07-2017 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 148 168 - T 06-07-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 Pfam PF04055 Radical SAM superfamily 150 319 1.3E-28 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 Pfam PF00919 Uncharacterized protein family UPF0004 7 100 5.5E-26 T 06-07-2017 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 SUPERFAMILY SSF102114 140 370 9.42E-53 T 06-07-2017 APT55_RS23750 867ac085982d3760b8c76a1aad132b87 450 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 434 7.6E-181 T 06-07-2017 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APT55_RS18525 7e32323010dcfc59b24c7744d3d0b420 142 Gene3D G3DSA:3.10.50.40 124 141 2.1E-31 T 06-07-2017 APT55_RS18525 7e32323010dcfc59b24c7744d3d0b420 142 Gene3D G3DSA:3.10.50.40 3 70 2.1E-31 T 06-07-2017 APT55_RS18525 7e32323010dcfc59b24c7744d3d0b420 142 SUPERFAMILY SSF54534 3 141 7.86E-42 T 06-07-2017 APT55_RS18525 7e32323010dcfc59b24c7744d3d0b420 142 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 139 1.0E-24 T 06-07-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 APT55_RS01670 0eaed79c068071aedfdb0d997d1f1722 379 Pfam PF00534 Glycosyl transferases group 1 197 352 3.7E-24 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS01670 0eaed79c068071aedfdb0d997d1f1722 379 SUPERFAMILY SSF53756 4 372 2.2E-56 T 06-07-2017 APT55_RS01670 0eaed79c068071aedfdb0d997d1f1722 379 Gene3D G3DSA:3.40.50.2000 194 353 6.2E-19 T 06-07-2017 APT55_RS01670 0eaed79c068071aedfdb0d997d1f1722 379 Pfam PF13439 Glycosyltransferase Family 4 20 182 4.0E-11 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS07295 648b0deb58b814a30af6e591f567bc30 242 SUPERFAMILY SSF56300 3 234 1.03E-28 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS07295 648b0deb58b814a30af6e591f567bc30 242 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 5 167 2.8E-6 T 06-07-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 APT55_RS07295 648b0deb58b814a30af6e591f567bc30 242 Gene3D G3DSA:3.60.21.10 3 234 4.4E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS16350 15c6157d8acc9ab3cdbb0e5083881e16 162 SUPERFAMILY SSF54593 80 160 6.38E-8 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS16350 15c6157d8acc9ab3cdbb0e5083881e16 162 SUPERFAMILY SSF54593 24 47 6.38E-8 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS16350 15c6157d8acc9ab3cdbb0e5083881e16 162 Gene3D G3DSA:3.10.180.10 78 159 2.0E-11 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS16350 15c6157d8acc9ab3cdbb0e5083881e16 162 Gene3D G3DSA:3.10.180.10 24 45 2.0E-11 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS00250 60d9a9e436202c38ab7e1dbd38eca847 284 SUPERFAMILY SSF55729 1 263 6.12E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS00250 60d9a9e436202c38ab7e1dbd38eca847 284 Gene3D G3DSA:3.40.630.30 1 126 1.1E-14 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS00250 60d9a9e436202c38ab7e1dbd38eca847 284 Pfam PF00583 Acetyltransferase (GNAT) family 46 100 5.0E-7 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS26955 8b60c04b63da2f5757666658805e8a79 449 SUPERFAMILY SSF51905 6 241 1.62E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26955 8b60c04b63da2f5757666658805e8a79 449 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 6 278 1.9E-24 T 06-07-2017 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APT55_RS26955 8b60c04b63da2f5757666658805e8a79 449 Gene3D G3DSA:3.50.50.60 114 278 4.2E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26955 8b60c04b63da2f5757666658805e8a79 449 Gene3D G3DSA:3.50.50.60 5 53 4.2E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 347 43.525 T 06-07-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 9 345 5.0E-119 T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 10 344 3.0E-124 T 06-07-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 23 32 - T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 SUPERFAMILY SSF51726 7 348 4.45E-108 T 06-07-2017 APT55_RS29210 3ef4545fc33a36eeb00aa8ac1b7dd55c 353 Gene3D G3DSA:3.20.20.210 8 347 7.5E-135 T 06-07-2017 APT55_RS04985 3d30cf793244fdfb2e857a0b80fc0599 145 SUPERFAMILY SSF52833 1 143 1.02E-52 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04985 3d30cf793244fdfb2e857a0b80fc0599 145 Gene3D G3DSA:3.40.30.10 2 143 2.6E-50 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04985 3d30cf793244fdfb2e857a0b80fc0599 145 Pfam PF00578 AhpC/TSA family 5 125 9.8E-41 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS04985 3d30cf793244fdfb2e857a0b80fc0599 145 PIRSF PIRSF000239 1 145 5.1E-26 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS07635 527bd06f69e707e39910042a27839dda 558 Pfam PF03109 ABC1 family 113 231 5.7E-38 T 06-07-2017 IPR004147 UbiB domain APT55_RS07635 527bd06f69e707e39910042a27839dda 558 SUPERFAMILY SSF56112 193 430 4.45E-26 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS07635 527bd06f69e707e39910042a27839dda 558 SUPERFAMILY SSF56112 95 158 4.45E-26 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 SUPERFAMILY SSF52540 5 226 3.07E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 Pfam PF00005 ABC transporter 21 163 1.3E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 Pfam PF13732 Domain of unknown function (DUF4162) 217 312 1.7E-6 T 06-07-2017 IPR025302 Domain of unknown function DUF4162 APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 Gene3D G3DSA:3.40.50.300 2 228 8.6E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 SMART SM00382 29 218 1.6E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18495 20bd91aefddf2d5086124fdfb408fb4a 339 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 314 1.6E-95 T 06-07-2017 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 SMART SM00322 66 134 5.0E-4 T 06-07-2017 IPR004087 K Homology domain GO:0003676 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 Pfam PF07650 KH domain 38 117 3.0E-14 T 06-07-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 Pfam PF00189 Ribosomal protein S3, C-terminal domain 129 211 4.0E-37 T 06-07-2017 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 215 38.82 T 06-07-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 SUPERFAMILY SSF54814 2 115 3.92E-31 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 Gene3D G3DSA:3.30.1140.32 118 216 8.2E-43 T 06-07-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 ProSitePatterns PS00548 Ribosomal protein S3 signature. 172 206 - T 06-07-2017 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 Gene3D G3DSA:3.30.300.20 17 115 2.1E-26 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 218 9.0E-88 T 06-07-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APT55_RS24735 a409ec71300b13702a7959f371a1deb9 250 SUPERFAMILY SSF54821 118 215 1.83E-37 T 06-07-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 Gene3D G3DSA:2.40.10.10 36 150 1.0E-31 T 06-07-2017 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 Pfam PF13365 Trypsin-like peptidase domain 86 223 6.1E-36 T 06-07-2017 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 SUPERFAMILY SSF50156 230 350 8.54E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 Gene3D G3DSA:2.30.42.10 261 362 4.1E-21 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 SUPERFAMILY SSF50494 18 267 2.11E-61 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 95 107 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 116 136 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 194 211 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 156 180 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 7.7E-47 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 SMART SM00228 259 349 5.8E-10 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 Pfam PF13180 PDZ domain 259 355 4.9E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS10330 98a8372e83c6afb9c2ee9d3004c11973 367 Gene3D G3DSA:2.40.10.10 151 260 5.5E-44 T 06-07-2017 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 Gene3D G3DSA:3.40.50.2000 29 425 1.0E-70 T 06-07-2017 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 Pfam PF11897 Protein of unknown function (DUF3417) 17 127 5.4E-35 T 06-07-2017 IPR024517 Glycogen phosphorylase, domain of unknown function DUF3417 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 Gene3D G3DSA:3.40.50.2000 426 723 3.5E-82 T 06-07-2017 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 PIRSF PIRSF000460 4 734 2.4E-263 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 Pfam PF00343 Carbohydrate phosphorylase 276 629 4.7E-19 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 Pfam PF00343 Carbohydrate phosphorylase 131 206 1.7E-5 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 114 723 5.7E-269 T 06-07-2017 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT55_RS25810 55a8ad797d4bff154ec842e0a134710f 739 SUPERFAMILY SSF53756 16 725 1.57E-196 T 06-07-2017 APT55_RS08200 83acb6e5bea1332af2f851f47c6e0ab0 500 Pfam PF07690 Major Facilitator Superfamily 74 434 7.6E-26 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS08200 83acb6e5bea1332af2f851f47c6e0ab0 500 SUPERFAMILY SSF103473 72 473 3.01E-40 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS08200 83acb6e5bea1332af2f851f47c6e0ab0 500 Gene3D G3DSA:1.20.1250.20 286 477 9.1E-22 T 06-07-2017 APT55_RS08200 83acb6e5bea1332af2f851f47c6e0ab0 500 Gene3D G3DSA:1.20.1250.20 73 266 2.5E-12 T 06-07-2017 APT55_RS04720 0e332fd4c39b3110443092fbfb0f48d4 179 SUPERFAMILY SSF52218 3 172 8.56E-44 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS04720 0e332fd4c39b3110443092fbfb0f48d4 179 Gene3D G3DSA:3.40.50.360 1 178 7.0E-57 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS04720 0e332fd4c39b3110443092fbfb0f48d4 179 Pfam PF03358 NADPH-dependent FMN reductase 3 146 1.3E-36 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 SUPERFAMILY SSF53383 6 429 7.85E-130 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 Gene3D G3DSA:3.40.640.10 6 294 1.4E-125 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 Gene3D G3DSA:3.90.1150.10 296 432 3.8E-53 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 PIRSF PIRSF001434 1 433 1.6E-127 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 6 430 4.1E-214 T 06-07-2017 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 APT55_RS03085 f5c2c733c03c5eec2072582f8c24ba65 434 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 430 1.2E-149 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 82 168 1.3E-23 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 31 174 3.4E-66 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 22 173 40.222 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 140 156 - T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 SUPERFAMILY SSF56770 30 180 1.03E-63 T 06-07-2017 APT55_RS06740 3c6671adbc283b9d3ec430df75e7aa65 242 Gene3D G3DSA:3.40.50.700 42 174 1.9E-36 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS14255 7558e8b4f6e603f3bd65f37834449edb 524 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 39 510 5.9E-93 T 06-07-2017 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 APT55_RS14255 7558e8b4f6e603f3bd65f37834449edb 524 PRINTS PR01084 Na+/H+ exchanger signature 135 145 5.8E-5 T 06-07-2017 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 APT55_RS14255 7558e8b4f6e603f3bd65f37834449edb 524 PRINTS PR01084 Na+/H+ exchanger signature 72 83 5.8E-5 T 06-07-2017 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 APT55_RS14255 7558e8b4f6e603f3bd65f37834449edb 524 PRINTS PR01084 Na+/H+ exchanger signature 101 109 5.8E-5 T 06-07-2017 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 APT55_RS14255 7558e8b4f6e603f3bd65f37834449edb 524 Pfam PF00999 Sodium/hydrogen exchanger family 25 405 8.3E-74 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS22345 95cc198bb5e843aa7a9185902e1464ff 85 Pfam PF01809 Haemolytic domain 4 68 5.7E-31 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor APT55_RS22345 95cc198bb5e843aa7a9185902e1464ff 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 4.0E-19 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor APT55_RS22345 95cc198bb5e843aa7a9185902e1464ff 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.744 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor APT55_RS22345 95cc198bb5e843aa7a9185902e1464ff 85 SMART SM01234 1 68 3.5E-49 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor APT55_RS22345 95cc198bb5e843aa7a9185902e1464ff 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 75 3.0E-35 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor APT55_RS20160 2c93a458ad3aa789afbfdd7def51fdbf 162 Pfam PF07813 LTXXQ motif family protein 45 144 4.1E-10 T 06-07-2017 IPR012899 LTXXQ motif family protein GO:0042597 APT55_RS31355 76474c88d010922a5fcb828b8da01698 206 Gene3D G3DSA:3.90.1570.10 3 201 2.6E-21 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS31355 76474c88d010922a5fcb828b8da01698 206 SUPERFAMILY SSF52980 2 201 2.52E-21 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS31355 76474c88d010922a5fcb828b8da01698 206 Pfam PF05685 Putative restriction endonuclease 11 198 2.0E-30 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 Gene3D G3DSA:3.40.50.1400 3 201 1.8E-75 T 06-07-2017 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 Pfam PF00762 Ferrochelatase 4 321 1.3E-120 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 ProSitePatterns PS00534 Ferrochelatase signature. 191 210 - T 06-07-2017 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 SUPERFAMILY SSF53800 1 328 8.18E-118 T 06-07-2017 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 SUPERFAMILY SSF103511 317 386 7.59E-9 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 Hamap MF_00323 Ferrochelatase [hemH]. 2 322 39.247 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 Gene3D G3DSA:3.40.50.1400 202 323 4.7E-48 T 06-07-2017 APT55_RS09715 8cf0027e4f3a0fa88c286ef27752a9bf 388 TIGRFAM TIGR00109 hemH: ferrochelatase 2 322 2.4E-127 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT55_RS11775 140c6990db971d442f580679d40fbcdc 263 Gene3D G3DSA:3.20.20.70 32 207 1.1E-17 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS11775 140c6990db971d442f580679d40fbcdc 263 SUPERFAMILY SSF102114 32 207 2.35E-18 T 06-07-2017 APT55_RS11775 140c6990db971d442f580679d40fbcdc 263 Pfam PF13353 4Fe-4S single cluster domain 30 139 1.1E-4 T 06-07-2017 APT55_RS11775 140c6990db971d442f580679d40fbcdc 263 Pfam PF04055 Radical SAM superfamily 31 168 4.3E-10 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS23205 13444cab3731c19519fd257f40c30d41 272 Pfam PF02616 Segregation and condensation protein ScpA 16 256 3.0E-34 T 06-07-2017 IPR003768 Segregation and condensation protein A APT55_RS14315 030ad19984436249d4c8643a663f54ee 246 Pfam PF01177 Asp/Glu/Hydantoin racemase 4 207 1.1E-12 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS10675 dda6d187d73fdf8c8d3ca3b85a06e67c 779 SUPERFAMILY SSF52540 581 775 3.49E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10675 dda6d187d73fdf8c8d3ca3b85a06e67c 779 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 563 766 1.3E-38 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 APT55_RS10675 dda6d187d73fdf8c8d3ca3b85a06e67c 779 Pfam PF02706 Chain length determinant protein 54 195 7.2E-18 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS10675 dda6d187d73fdf8c8d3ca3b85a06e67c 779 Pfam PF13614 AAA domain 593 707 2.7E-11 T 06-07-2017 IPR025669 AAA domain APT55_RS10675 dda6d187d73fdf8c8d3ca3b85a06e67c 779 Gene3D G3DSA:3.40.50.300 581 775 1.9E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23320 44cf94ba90893ca464595111f15cbe83 565 Pfam PF01935 Domain of unknown function DUF87 161 395 1.0E-36 T 06-07-2017 IPR002789 Helicase HerA, central domain APT55_RS23320 44cf94ba90893ca464595111f15cbe83 565 Gene3D G3DSA:3.40.50.300 150 262 1.4E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23320 44cf94ba90893ca464595111f15cbe83 565 Gene3D G3DSA:3.40.50.300 360 534 1.4E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23320 44cf94ba90893ca464595111f15cbe83 565 Pfam PF09378 HAS barrel domain 8 93 8.0E-9 T 06-07-2017 IPR018538 Helicase HerA, barrel domain APT55_RS23320 44cf94ba90893ca464595111f15cbe83 565 SUPERFAMILY SSF52540 147 540 1.01E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 Gene3D G3DSA:3.40.50.720 5 234 2.7E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 SUPERFAMILY SSF51735 1 261 1.38E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.0E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.0E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.0E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.0E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.0E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 Pfam PF00106 short chain dehydrogenase 6 197 1.2E-53 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS05250 ccc31c13a1021133461d1e0d227ffe1f 274 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 194 0.006 T 06-07-2017 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 SUPERFAMILY SSF111038 1 137 2.35E-52 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 Pfam PF01894 Uncharacterised protein family UPF0047 18 134 7.3E-44 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 PIRSF PIRSF004681 1 137 3.3E-54 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 137 1.6E-51 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 98 116 - T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04485 9fe637ec7e4e0ce1c81b098fb86cb152 137 Gene3D G3DSA:2.60.120.460 1 137 1.5E-57 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 APT55_RS04620 6ee2689354e304fa4da6712f90ec0fe2 415 Gene3D G3DSA:3.40.190.10 143 345 5.8E-43 T 06-07-2017 APT55_RS04620 6ee2689354e304fa4da6712f90ec0fe2 415 Pfam PF13416 Bacterial extracellular solute-binding protein 47 355 4.5E-37 T 06-07-2017 APT55_RS04620 6ee2689354e304fa4da6712f90ec0fe2 415 SUPERFAMILY SSF53850 29 408 2.37E-77 T 06-07-2017 APT55_RS24335 9b9999881676aecc9c8758e0d3a740d4 86 Gene3D G3DSA:3.40.50.1010 14 85 1.7E-11 T 06-07-2017 IPR029060 PIN domain-like APT55_RS24335 9b9999881676aecc9c8758e0d3a740d4 86 SUPERFAMILY SSF88723 14 85 3.08E-12 T 06-07-2017 IPR029060 PIN domain-like APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 12 98 8.0E-19 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 Pfam PF00825 Ribonuclease P 2 109 7.9E-33 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 Gene3D G3DSA:3.30.230.10 2 113 3.7E-33 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 SUPERFAMILY SSF54211 2 113 8.6E-28 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 2 112 18.36 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 110 5.8E-27 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT55_RS00990 339534dae077550c22e2d5a87ddd52ce 115 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 52 66 - T 06-07-2017 IPR020539 Ribonuclease P, conserved site GO:0004526 APT55_RS17555 386055b4881e54296c59a00fa02e525b 438 Pfam PF01094 Receptor family ligand binding region 77 427 1.4E-42 T 06-07-2017 IPR001828 Receptor, ligand binding region APT55_RS17555 386055b4881e54296c59a00fa02e525b 438 SUPERFAMILY SSF53822 56 433 2.52E-69 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS17555 386055b4881e54296c59a00fa02e525b 438 Gene3D G3DSA:3.40.50.2300 182 329 3.1E-8 T 06-07-2017 APT55_RS17555 386055b4881e54296c59a00fa02e525b 438 Gene3D G3DSA:3.40.50.2300 330 415 1.8E-42 T 06-07-2017 APT55_RS17555 386055b4881e54296c59a00fa02e525b 438 Gene3D G3DSA:3.40.50.2300 53 181 1.8E-42 T 06-07-2017 APT55_RS13210 a4d06ab247487231539c7349f6f4871d 206 Pfam PF13559 Domain of unknown function (DUF4129) 125 192 3.6E-8 T 06-07-2017 IPR025403 Domain of unknown function DUF4129 APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 SMART SM00862 148 224 3.6E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 Gene3D G3DSA:1.10.10.10 127 225 3.1E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 7.1E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 SUPERFAMILY SSF52172 1 182 5.41E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 Pfam PF00072 Response regulator receiver domain 3 116 1.3E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 SMART SM00448 1 115 1.9E-44 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS21915 bc714b1fab25dd168af5989cd8fa4ce9 227 Gene3D G3DSA:3.40.50.2300 1 125 1.1E-38 T 06-07-2017 APT55_RS17505 0663101c7e6c4cd38826ae9444bd0962 73 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 19 67 1.1E-15 T 06-07-2017 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS17505 0663101c7e6c4cd38826ae9444bd0962 73 Gene3D G3DSA:1.20.5.1030 16 67 4.5E-17 T 06-07-2017 APT55_RS17505 0663101c7e6c4cd38826ae9444bd0962 73 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 20 48 - T 06-07-2017 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT55_RS17505 0663101c7e6c4cd38826ae9444bd0962 73 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 19 67 8.3E-16 T 06-07-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 APT55_RS04215 26cc4c716c364aad32ee012df608d1b6 403 Pfam PF01548 Transposase 7 167 3.5E-9 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS04215 26cc4c716c364aad32ee012df608d1b6 403 Pfam PF02371 Transposase IS116/IS110/IS902 family 295 342 2.1E-4 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 APT55_RS16195 66468121432b87b24c487eaef29f76c6 346 Pfam PF00953 Glycosyl transferase family 4 82 239 3.7E-38 T 06-07-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APT55_RS16195 66468121432b87b24c487eaef29f76c6 346 ProSitePatterns PS01348 MraY family signature 2. 159 170 - T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT55_RS01610 8ccf5d31a8259e9ac9653f82ca18c306 226 Pfam PF02080 TrkA-C domain 149 218 7.9E-10 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS01610 8ccf5d31a8259e9ac9653f82ca18c306 226 Gene3D G3DSA:3.40.50.720 1 145 3.3E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01610 8ccf5d31a8259e9ac9653f82ca18c306 226 SUPERFAMILY SSF51735 1 144 1.07E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01610 8ccf5d31a8259e9ac9653f82ca18c306 226 Pfam PF02254 TrkA-N domain 3 117 2.5E-22 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT55_RS01610 8ccf5d31a8259e9ac9653f82ca18c306 226 SUPERFAMILY SSF116726 130 221 1.44E-9 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS28755 6ab2943ab6df5b8e52affe28ccd27ae5 188 Pfam PF13302 Acetyltransferase (GNAT) domain 7 149 2.5E-21 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS28755 6ab2943ab6df5b8e52affe28ccd27ae5 188 Gene3D G3DSA:3.40.630.30 2 178 8.1E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28755 6ab2943ab6df5b8e52affe28ccd27ae5 188 SUPERFAMILY SSF55729 2 151 1.15E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS16645 6f35b24280b314b52c8e88886b467390 287 Gene3D G3DSA:3.40.1350.10 148 263 3.1E-17 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS16645 6f35b24280b314b52c8e88886b467390 287 Pfam PF14338 Mrr N-terminal domain 11 88 4.2E-17 T 06-07-2017 IPR025745 Restriction system protein Mrr-like N-terminal domain APT55_RS16645 6f35b24280b314b52c8e88886b467390 287 SUPERFAMILY SSF52980 150 264 1.77E-15 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16645 6f35b24280b314b52c8e88886b467390 287 Pfam PF04471 Restriction endonuclease 146 261 3.1E-31 T 06-07-2017 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 Gene3D G3DSA:3.20.20.70 7 313 1.3E-95 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 Pfam PF04055 Radical SAM superfamily 50 207 1.1E-15 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 SMART SM00729 42 249 4.8E-41 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 Hamap MF_01694 Biotin synthase [bioB]. 4 314 41.176 T 06-07-2017 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 TIGRFAM TIGR00433 bioB: biotin synthase 13 306 5.3E-119 T 06-07-2017 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 305 4.6E-17 T 06-07-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 SUPERFAMILY SSF102114 7 307 9.03E-85 T 06-07-2017 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 PIRSF PIRSF001619 2 316 8.0E-128 T 06-07-2017 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT55_RS07890 281d6d79cc11b5405ae791a360c537f2 316 SMART SM00876 220 313 1.1E-36 T 06-07-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 SUPERFAMILY SSF82771 25 95 1.31E-7 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 Gene3D G3DSA:1.10.260.40 118 173 4.3E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 SUPERFAMILY SSF47413 116 174 3.26E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 Gene3D G3DSA:3.40.1440.10 26 64 4.8E-4 T 06-07-2017 IPR027299 GIY-YIG domain APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 SMART SM00530 121 176 9.1E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 Pfam PF13560 Helix-turn-helix domain 117 172 1.5E-7 T 06-07-2017 APT55_RS06105 a33570a2d4217dc03c8859ab834ec824 180 Pfam PF01541 GIY-YIG catalytic domain 27 61 7.3E-5 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Gene3D G3DSA:3.30.70.870 380 454 4.4E-22 T 06-07-2017 APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Gene3D G3DSA:3.30.230.10 458 570 3.8E-42 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Gene3D G3DSA:3.30.70.240 571 662 1.9E-19 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SUPERFAMILY SSF54980 576 663 3.07E-19 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Pfam PF14492 Elongation Factor G, domain II 380 449 1.4E-20 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SUPERFAMILY SSF54211 453 572 5.69E-37 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Gene3D G3DSA:2.40.30.10 293 376 8.9E-19 T 06-07-2017 APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Pfam PF00679 Elongation factor G C-terminus 573 662 7.2E-19 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Gene3D G3DSA:3.40.50.300 8 279 5.4E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Pfam PF03764 Elongation factor G, domain IV 453 570 2.0E-38 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SUPERFAMILY SSF50447 260 372 1.47E-18 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SUPERFAMILY SSF54980 379 453 9.71E-17 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 Pfam PF00009 Elongation factor Tu GTP binding domain 8 273 9.1E-31 T 06-07-2017 APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SMART SM00889 454 571 2.5E-56 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SMART SM00838 573 663 4.3E-16 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS22625 ae749c186a1e5166e5640ade22a90663 674 SUPERFAMILY SSF52540 8 272 1.7E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03505 dd159ecfa830c844587d67961db756b5 303 Gene3D G3DSA:1.20.910.10 36 115 3.7E-18 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS03505 dd159ecfa830c844587d67961db756b5 303 Gene3D G3DSA:1.20.910.10 158 300 3.7E-18 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS03505 dd159ecfa830c844587d67961db756b5 303 Pfam PF12981 Domain of Unknown Function with PDB structure (DUF3865) 161 299 1.5E-7 T 06-07-2017 IPR024477 Protein of unknown function DUF3865, CADD-like APT55_RS03505 dd159ecfa830c844587d67961db756b5 303 SUPERFAMILY SSF48613 38 115 1.39E-17 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS03505 dd159ecfa830c844587d67961db756b5 303 SUPERFAMILY SSF48613 158 297 1.39E-17 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS01420 5c48795824dcd76d1f28efc4a21517aa 242 SUPERFAMILY SSF52540 3 238 4.91E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01420 5c48795824dcd76d1f28efc4a21517aa 242 Gene3D G3DSA:3.40.50.300 3 234 7.4E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01420 5c48795824dcd76d1f28efc4a21517aa 242 SMART SM00382 27 217 3.7E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01420 5c48795824dcd76d1f28efc4a21517aa 242 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 1.6E-99 T 06-07-2017 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 APT55_RS01420 5c48795824dcd76d1f28efc4a21517aa 242 Pfam PF00005 ABC transporter 19 167 9.9E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 Gene3D G3DSA:2.30.170.10 3 54 1.8E-20 T 06-07-2017 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 ProDom PD019076 METALLOTHIONEIN METALLOTHIONEIN ZINC METAL-BINDING CADMIUM CLUSTER MT METAL-THIOLATE COPPER SMTA 3 54 3.0E-12 T 06-07-2017 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 SUPERFAMILY SSF57868 5 54 1.55E-16 T 06-07-2017 IPR017854 Metallothionein domain GO:0046872 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 Pfam PF02069 Prokaryotic metallothionein 3 54 2.7E-22 T 06-07-2017 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 PRINTS PR00859 Prokaryote metallothionein signature 37 53 1.5E-15 T 06-07-2017 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 PRINTS PR00859 Prokaryote metallothionein signature 2 18 1.5E-15 T 06-07-2017 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 APT55_RS01515 160dc8743e81757cccdc9389ea69c805 54 PRINTS PR00859 Prokaryote metallothionein signature 20 36 1.5E-15 T 06-07-2017 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 APT55_RS03420 931abc92f9e80eca23f4029b7966856d 278 Pfam PF02153 Prephenate dehydrogenase 15 267 2.5E-72 T 06-07-2017 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 APT55_RS03420 931abc92f9e80eca23f4029b7966856d 278 SUPERFAMILY SSF48179 167 277 2.61E-30 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS03420 931abc92f9e80eca23f4029b7966856d 278 SUPERFAMILY SSF51735 1 163 7.12E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03420 931abc92f9e80eca23f4029b7966856d 278 Gene3D G3DSA:3.40.50.720 1 172 7.0E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17830 43f57b276958504d425d7ff7524d8f8c 340 SUPERFAMILY SSF69318 12 323 8.55E-32 T 06-07-2017 APT55_RS17830 43f57b276958504d425d7ff7524d8f8c 340 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 63 122 4.3E-7 T 06-07-2017 APT55_RS17830 43f57b276958504d425d7ff7524d8f8c 340 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 207 269 2.0E-8 T 06-07-2017 APT55_RS17830 43f57b276958504d425d7ff7524d8f8c 340 Gene3D G3DSA:2.130.10.130 55 157 2.5E-15 T 06-07-2017 APT55_RS17830 43f57b276958504d425d7ff7524d8f8c 340 Gene3D G3DSA:2.130.10.130 207 315 2.5E-15 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 6.7E-24 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 6.7E-24 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 6.7E-24 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 6.7E-24 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 6.7E-24 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82866 295 500 4.32E-35 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1018 1.7E-237 T 06-07-2017 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82866 799 1022 1.57E-45 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82714 187 269 4.97E-16 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Gene3D G3DSA:3.30.2090.10 187 270 8.5E-17 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Gene3D G3DSA:3.30.2090.10 715 800 4.7E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82693 147 186 5.58E-18 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82693 272 325 5.58E-18 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Gene3D G3DSA:3.30.70.1430 42 132 2.8E-27 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Pfam PF00873 AcrB/AcrD/AcrF family 5 1019 1.6E-281 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82693 42 133 5.23E-24 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 SUPERFAMILY SSF82714 715 800 4.58E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Gene3D G3DSA:1.10.3850.10 805 1020 1.4E-50 T 06-07-2017 APT55_RS23410 56b3eee24240f0c3193bd79983d8c522 1038 Gene3D G3DSA:1.10.3850.10 280 500 1.1E-46 T 06-07-2017 APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 Pfam PF00301 Rubredoxin 27 72 1.4E-19 T 06-07-2017 IPR024935 Rubredoxin domain GO:0005506 APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 SUPERFAMILY SSF57802 23 77 6.06E-20 T 06-07-2017 APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 ProSitePatterns PS00202 Rubredoxin signature. 56 66 - T 06-07-2017 IPR018527 Rubredoxin, iron-binding site GO:0046872 APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 Gene3D G3DSA:2.20.28.10 23 75 9.3E-24 T 06-07-2017 IPR004039 Rubredoxin-type fold APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 PRINTS PR00163 Rubredoxin signature 56 72 8.9E-9 T 06-07-2017 IPR024935 Rubredoxin domain GO:0005506 APT55_RS06750 1fb7a8df599ea640890251ef864a65b1 124 PRINTS PR00163 Rubredoxin signature 26 42 8.9E-9 T 06-07-2017 IPR024935 Rubredoxin domain GO:0005506 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 Gene3D G3DSA:1.10.940.10 3 36 7.5E-35 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 Gene3D G3DSA:1.10.940.10 104 201 7.5E-35 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 Pfam PF01029 NusB family 110 202 1.2E-28 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 SUPERFAMILY SSF48013 88 204 4.97E-30 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 5 206 20.436 T 06-07-2017 IPR011605 NusB antitermination factor GO:0006353 APT55_RS10785 a3424c1b93bb0d391de489e0a738b9cc 214 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 103 204 1.0E-33 T 06-07-2017 IPR011605 NusB antitermination factor GO:0006353 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 438 455 - T 06-07-2017 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 Gene3D G3DSA:3.40.50.10490 230 447 3.1E-66 T 06-07-2017 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 19 465 27.797 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 SUPERFAMILY SSF53697 6 466 4.11E-141 T 06-07-2017 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 Gene3D G3DSA:3.40.50.10490 109 229 3.4E-33 T 06-07-2017 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 Pfam PF00342 Phosphoglucose isomerase 28 375 1.1E-50 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 Pfam PF00342 Phosphoglucose isomerase 403 465 1.9E-11 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 406 424 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 117 136 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 305 326 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 424 438 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 438 451 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS26085 e019da2e7749fb29a07e5c34e0952a5c 528 PRINTS PR00662 Glucose-6-phosphate isomerase signature 229 247 9.3E-35 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS13040 98d03f67a8b271739caebd6e09a8455f 64 SUPERFAMILY SSF55008 2 63 5.63E-13 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS13040 98d03f67a8b271739caebd6e09a8455f 64 Gene3D G3DSA:3.30.70.100 2 63 1.5E-16 T 06-07-2017 APT55_RS13040 98d03f67a8b271739caebd6e09a8455f 64 Pfam PF00403 Heavy-metal-associated domain 5 62 3.5E-9 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS05730 bc56b94de060ff787df29b9971532f60 102 Pfam PF00936 BMC domain 4 81 4.8E-28 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS05730 bc56b94de060ff787df29b9971532f60 102 SMART SM00877 3 81 3.3E-32 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS05730 bc56b94de060ff787df29b9971532f60 102 SUPERFAMILY SSF143414 4 99 2.75E-31 T 06-07-2017 APT55_RS05730 bc56b94de060ff787df29b9971532f60 102 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 61 2.0E-23 T 06-07-2017 APT55_RS05730 bc56b94de060ff787df29b9971532f60 102 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 06-07-2017 IPR020808 Bacterial microcompartments protein, conserved site APT55_RS12785 ce64079501756a65e0e34acec3a66225 390 SUPERFAMILY SSF53756 1 373 6.63E-70 T 06-07-2017 APT55_RS12785 ce64079501756a65e0e34acec3a66225 390 Gene3D G3DSA:3.40.50.2000 191 351 3.0E-23 T 06-07-2017 APT55_RS12785 ce64079501756a65e0e34acec3a66225 390 Pfam PF13579 Glycosyl transferase 4-like domain 16 176 1.1E-20 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS12785 ce64079501756a65e0e34acec3a66225 390 Pfam PF00534 Glycosyl transferases group 1 198 351 3.0E-28 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 3.5E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 3.5E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 3.5E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 SUPERFAMILY SSF53474 7 292 2.65E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00412 Epoxide hydrolase signature 37 55 2.7E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00412 Epoxide hydrolase signature 269 291 2.7E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 PRINTS PR00412 Epoxide hydrolase signature 118 131 2.7E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 Pfam PF12697 Alpha/beta hydrolase family 33 285 4.9E-24 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS15060 3179100fa90e65677159aeb09c65d907 295 Gene3D G3DSA:3.40.50.1820 8 294 5.8E-68 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14845 0504798510e79d537c4aecd54c0958be 166 Pfam PF02681 Divergent PAP2 family 9 143 4.0E-51 T 06-07-2017 IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase-related APT55_RS11675 ed798a56b75eb6956c02f79f19ce8df3 155 Pfam PF03270 Protein of unknown function, DUF269 34 154 1.8E-48 T 06-07-2017 IPR004952 Uncharacterised protein family UPF0460 APT55_RS11675 ed798a56b75eb6956c02f79f19ce8df3 155 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 15 153 3.5E-47 T 06-07-2017 IPR004952 Uncharacterised protein family UPF0460 APT55_RS11675 ed798a56b75eb6956c02f79f19ce8df3 155 PIRSF PIRSF005788 1 155 2.4E-62 T 06-07-2017 IPR004952 Uncharacterised protein family UPF0460 APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 ProSitePatterns PS01123 Thermonuclease family signature 1. 43 67 - T 06-07-2017 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 Pfam PF00565 Staphylococcal nuclease homologue 57 159 1.2E-25 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 SMART SM00318 32 159 1.1E-32 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 Gene3D G3DSA:2.40.50.90 33 163 7.1E-34 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 ProSitePatterns PS01284 Thermonuclease family signature 2. 99 109 - T 06-07-2017 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 Pfam PF05901 Excalibur calcium-binding domain 198 232 1.6E-7 T 06-07-2017 IPR008613 Excalibur calcium-binding domain APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 SMART SM00894 195 232 1.2E-6 T 06-07-2017 IPR008613 Excalibur calcium-binding domain APT55_RS31375 2fd4549fbc3957393718efa5a6893661 236 SUPERFAMILY SSF50199 34 164 1.11E-38 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold APT55_RS18130 0402860a249439a7d83ef2c611daae3f 104 SUPERFAMILY SSF52833 5 101 3.31E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18130 0402860a249439a7d83ef2c611daae3f 104 Gene3D G3DSA:3.40.30.10 5 101 3.6E-5 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS29135 2442a3d922048431e65cb676765c2967 107 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 29 95 1.0E-18 T 06-07-2017 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 APT55_RS29135 2442a3d922048431e65cb676765c2967 107 SUPERFAMILY SSF54736 27 101 1.57E-21 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS29135 2442a3d922048431e65cb676765c2967 107 Gene3D G3DSA:3.30.1390.10 15 97 5.9E-23 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 ProSitePatterns PS00018 EF-hand calcium-binding domain. 116 128 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Pfam PF12836 Helix-hairpin-helix motif 432 489 2.1E-17 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Gene3D G3DSA:3.30.870.10 2 221 8.4E-32 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Pfam PF13091 PLD-like domain 40 218 4.6E-20 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Pfam PF13091 PLD-like domain 265 400 4.3E-19 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SMART SM00155 346 373 0.01 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SMART SM00155 154 181 3.3E-6 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SUPERFAMILY SSF56024 236 414 6.02E-20 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Gene3D G3DSA:1.10.150.280 401 490 3.6E-26 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SUPERFAMILY SSF56024 14 220 2.46E-22 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 Gene3D G3DSA:3.30.870.10 264 400 1.9E-18 T 06-07-2017 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SUPERFAMILY SSF47781 421 489 2.67E-21 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SMART SM00278 442 461 6.3 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS11950 af70f2bc60d5cadff4cbbc7d55d8b135 490 SMART SM00278 468 487 64.0 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 16 47 1.2E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 162 201 3.0E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 65 103 6.1E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 237 276 8.8E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 110 138 3.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 Pfam PF00805 Pentapeptide repeats (8 copies) 277 316 7.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 SUPERFAMILY SSF141571 144 282 1.18E-39 T 06-07-2017 APT55_RS22745 2dd4082b7a9702c834823969a11515da 331 SUPERFAMILY SSF141571 8 138 1.23E-35 T 06-07-2017 APT55_RS01235 d328e6582a79d9be2a6dff6ca84cad37 259 Gene3D G3DSA:3.30.470.10 3 74 1.6E-10 T 06-07-2017 APT55_RS01235 d328e6582a79d9be2a6dff6ca84cad37 259 Gene3D G3DSA:3.20.10.10 124 239 9.9E-25 T 06-07-2017 APT55_RS01235 d328e6582a79d9be2a6dff6ca84cad37 259 SUPERFAMILY SSF56752 3 240 1.11E-45 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS01235 d328e6582a79d9be2a6dff6ca84cad37 259 Pfam PF01063 Amino-transferase class IV 30 233 5.8E-31 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 SMART SM00487 299 508 3.4E-15 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 SMART SM00490 771 862 1.7E-15 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 SUPERFAMILY SSF52540 289 506 8.65E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 Pfam PF00271 Helicase conserved C-terminal domain 748 862 4.9E-18 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 Gene3D G3DSA:3.40.50.300 295 476 4.7E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 Pfam PF00176 SNF2 family N-terminal domain 319 505 3.6E-19 T 06-07-2017 IPR000330 SNF2-related, N-terminal domain GO:0005524 APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 SUPERFAMILY SSF52540 732 905 1.4E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 SUPERFAMILY SSF52540 425 476 1.4E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30120 cae531e70b284aec70152e77d2750589 1045 Gene3D G3DSA:3.40.50.300 737 895 3.7E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31085 7af9328b04aaa7860ff41f96c91659eb 275 SUPERFAMILY SSF52540 6 262 2.45E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31085 7af9328b04aaa7860ff41f96c91659eb 275 Gene3D G3DSA:3.40.50.300 6 265 1.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31085 7af9328b04aaa7860ff41f96c91659eb 275 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 205 5.9E-24 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 8.3E-25 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 SUPERFAMILY SSF48179 163 289 1.11E-30 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 Gene3D G3DSA:3.40.50.720 2 163 2.2E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 1.1E-44 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 Gene3D G3DSA:1.10.1040.10 165 292 3.6E-33 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 SUPERFAMILY SSF51735 3 163 2.4E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27970 236aa271990e4e3097c0dbe698041d85 295 PIRSF PIRSF000103 1 292 4.6E-84 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT55_RS07095 8a08b700fac0c7ffd4827f5777f61b0c 86 SUPERFAMILY SSF101744 1 76 4.03E-13 T 06-07-2017 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 APT55_RS07095 8a08b700fac0c7ffd4827f5777f61b0c 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 6 73 1.0E-4 T 06-07-2017 IPR009778 Modulator of Rho-dependent transcription termination APT55_RS08850 cfeaf80583609c5b6171cfaf0e464bff 110 SUPERFAMILY SSF143847 1 109 1.83E-43 T 06-07-2017 IPR014968 XisI protein APT55_RS08850 cfeaf80583609c5b6171cfaf0e464bff 110 Gene3D G3DSA:3.30.310.110 1 109 1.4E-45 T 06-07-2017 IPR014968 XisI protein APT55_RS08850 cfeaf80583609c5b6171cfaf0e464bff 110 Pfam PF08869 XisI protein 1 109 3.4E-45 T 06-07-2017 IPR014968 XisI protein APT55_RS29165 8bfdb55e4ec395e9ca7cbb89463e39ef 226 Gene3D G3DSA:3.40.50.850 8 225 1.1E-65 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS29165 8bfdb55e4ec395e9ca7cbb89463e39ef 226 SUPERFAMILY SSF52499 7 220 4.32E-56 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS29165 8bfdb55e4ec395e9ca7cbb89463e39ef 226 Pfam PF00857 Isochorismatase family 23 212 8.3E-44 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 SUPERFAMILY SSF56784 3 273 2.57E-61 T 06-07-2017 IPR023214 HAD-like domain APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 269 4.1E-54 T 06-07-2017 IPR023214 HAD-like domain APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 8 268 9.7E-51 T 06-07-2017 IPR000150 Cof protein GO:0016787 APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 Gene3D G3DSA:3.40.50.1000 187 274 8.4E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 Gene3D G3DSA:3.40.50.1000 3 76 8.4E-43 T 06-07-2017 IPR023214 HAD-like domain APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 Gene3D G3DSA:3.30.1240.10 88 186 2.6E-15 T 06-07-2017 APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 ProSitePatterns PS01229 Hypothetical cof family signature 2. 223 245 - T 06-07-2017 APT55_RS00860 e9ab13b0f2a236331724c3394d9fcbc8 274 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 8 242 9.3E-24 T 06-07-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APT55_RS30365 0dfedc0d9abd2ed7fc3685b90368ec65 167 Gene3D G3DSA:3.40.630.30 11 149 3.0E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30365 0dfedc0d9abd2ed7fc3685b90368ec65 167 SUPERFAMILY SSF55729 10 150 1.16E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30365 0dfedc0d9abd2ed7fc3685b90368ec65 167 Pfam PF00583 Acetyltransferase (GNAT) family 60 143 5.8E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS30365 0dfedc0d9abd2ed7fc3685b90368ec65 167 PIRSF PIRSF000452 5 156 2.6E-45 T 06-07-2017 IPR024170 Aminoglycoside N6-acetyltransferase APT55_RS22690 8bbd4e5730afbc21249f3e1f24ae0ae2 118 Pfam PF01169 Uncharacterized protein family UPF0016 34 107 1.2E-21 T 06-07-2017 IPR001727 Gdt1 family GO:0032472 APT55_RS31260 33e2b6bf78dce62d4700ed5fad10342c 182 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 150 7.2E-9 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS31260 33e2b6bf78dce62d4700ed5fad10342c 182 Gene3D G3DSA:3.60.10.10 1 147 4.4E-13 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS31260 33e2b6bf78dce62d4700ed5fad10342c 182 SUPERFAMILY SSF56219 1 180 2.22E-21 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.498 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 Pfam PF00453 Ribosomal protein L20 3 108 1.2E-47 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 SUPERFAMILY SSF74731 3 115 1.15E-50 T 06-07-2017 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 Gene3D G3DSA:1.10.1900.20 55 115 3.9E-30 T 06-07-2017 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 70 1.0E-10 T 06-07-2017 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.5E-40 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.5E-40 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.5E-40 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17405 5311fadaf28f843d1069c057f16e25ea 116 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 1.8E-50 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS01970 8413eb190701a33b49fdd545f6f8779a 72 Pfam PF16277 Domain of unknown function (DUF4926) 4 60 4.8E-23 T 06-07-2017 IPR032568 Protein of unknown function DUF4926 APT55_RS21460 c457252b1115895cc01ba6ed0b1e138a 152 Gene3D G3DSA:1.10.1510.10 1 94 1.2E-27 T 06-07-2017 APT55_RS21460 c457252b1115895cc01ba6ed0b1e138a 152 Pfam PF09424 Yqey-like protein 4 150 7.1E-50 T 06-07-2017 IPR019004 Uncharacterised domain YOR215C, mitochondrial APT55_RS21460 c457252b1115895cc01ba6ed0b1e138a 152 SUPERFAMILY SSF89095 1 150 5.75E-45 T 06-07-2017 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 APT55_RS21460 c457252b1115895cc01ba6ed0b1e138a 152 Gene3D G3DSA:1.10.10.410 95 150 1.6E-25 T 06-07-2017 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 TIGRFAM TIGR03936 sam_1_link_chp: radical SAM-linked protein 638 849 3.5E-65 T 06-07-2017 IPR018768 Domain of unknown function DUF2344 APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 Pfam PF04055 Radical SAM superfamily 256 418 5.2E-17 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 TIGRFAM TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein 12 608 8.5E-182 T 06-07-2017 IPR023862 Conserved hypothetical protein CHP03960, radical SAM APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 Pfam PF10105 Uncharacterized protein conserved in bacteria (DUF2344) 638 824 8.0E-56 T 06-07-2017 IPR018768 Domain of unknown function DUF2344 APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 SUPERFAMILY SSF102114 236 607 3.53E-35 T 06-07-2017 APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 Gene3D G3DSA:3.80.30.20 250 477 9.3E-44 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS16545 3af352fb682d3683b825ac24ed122efb 852 SMART SM00729 251 471 6.5E-33 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS18585 2d6a4d83be1f79f4ac2236a79973b9c5 490 SUPERFAMILY SSF111283 28 490 1.06E-105 T 06-07-2017 APT55_RS18585 2d6a4d83be1f79f4ac2236a79973b9c5 490 Pfam PF01523 Putative modulator of DNA gyrase 47 345 3.2E-48 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 Pfam PF00571 CBS domain 71 121 5.0E-9 T 06-07-2017 IPR000644 CBS domain APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 Pfam PF00571 CBS domain 6 56 5.3E-6 T 06-07-2017 IPR000644 CBS domain APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 SMART SM00116 11 60 0.12 T 06-07-2017 IPR000644 CBS domain APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 SMART SM00116 78 124 3.3E-5 T 06-07-2017 IPR000644 CBS domain APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 Gene3D G3DSA:3.10.580.10 5 122 3.9E-24 T 06-07-2017 APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 Pfam PF02672 CP12 domain 131 194 8.6E-17 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 SMART SM01093 131 201 2.5E-9 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS03595 7dee6086e6b8a51322b9144f3bf19ece 205 SUPERFAMILY SSF54631 4 122 1.11E-22 T 06-07-2017 APT55_RS19345 b21e03617692df54c91406abe1e8642a 162 Gene3D G3DSA:3.40.140.10 3 157 1.4E-29 T 06-07-2017 APT55_RS19345 b21e03617692df54c91406abe1e8642a 162 SUPERFAMILY SSF53927 4 112 4.25E-28 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 APT55_RS19345 b21e03617692df54c91406abe1e8642a 162 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 103 3.0E-10 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 APT55_RS26555 86464986fba572042ffad1e504f467bb 153 Pfam PF13673 Acetyltransferase (GNAT) domain 28 144 2.6E-19 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS26555 86464986fba572042ffad1e504f467bb 153 SUPERFAMILY SSF55729 1 153 7.8E-35 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS26555 86464986fba572042ffad1e504f467bb 153 Gene3D G3DSA:3.40.630.30 1 153 3.2E-42 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30205 8377fe454e3fe98b39d684a516f451ad 144 Gene3D G3DSA:2.60.120.10 18 115 2.7E-20 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS30205 8377fe454e3fe98b39d684a516f451ad 144 Pfam PF07883 Cupin domain 35 106 1.2E-14 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS30205 8377fe454e3fe98b39d684a516f451ad 144 SUPERFAMILY SSF51182 15 121 9.83E-20 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS13585 da09406250cd2790bd25460546b368b3 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 152 31.244 T 06-07-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 APT55_RS13585 da09406250cd2790bd25460546b368b3 153 SUPERFAMILY SSF75217 4 150 8.5E-39 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS13585 da09406250cd2790bd25460546b368b3 153 Gene3D G3DSA:3.40.1280.10 1 150 6.6E-54 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS13585 da09406250cd2790bd25460546b368b3 153 Pfam PF00588 SpoU rRNA Methylase family 3 142 1.1E-30 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT55_RS13585 da09406250cd2790bd25460546b368b3 153 PIRSF PIRSF029256 1 153 6.1E-56 T 06-07-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 APT55_RS03300 af3a330243a7b14014dea1ccb4abb6ba 288 SUPERFAMILY SSF52540 60 260 2.76E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03300 af3a330243a7b14014dea1ccb4abb6ba 288 PIRSF PIRSF028756 1 288 9.0E-90 T 06-07-2017 IPR016898 Polyphosphate kinase 2 APT55_RS03300 af3a330243a7b14014dea1ccb4abb6ba 288 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 4 274 2.8E-120 T 06-07-2017 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 APT55_RS03300 af3a330243a7b14014dea1ccb4abb6ba 288 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 29 261 2.4E-67 T 06-07-2017 IPR022488 Polyphosphate kinase-2-related APT55_RS03300 af3a330243a7b14014dea1ccb4abb6ba 288 Gene3D G3DSA:3.40.50.300 3 285 1.8E-102 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24515 b3f5b5c63bc481c5b7c81266a5defc56 195 SUPERFAMILY SSF52980 12 191 3.11E-53 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS24515 b3f5b5c63bc481c5b7c81266a5defc56 195 Pfam PF05685 Putative restriction endonuclease 19 189 5.7E-42 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS24515 b3f5b5c63bc481c5b7c81266a5defc56 195 Gene3D G3DSA:3.90.1570.10 14 191 1.8E-72 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS02375 f97bb961a91766b4046b3f2285a3f959 429 SMART SM00563 46 190 9.5E-8 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS02375 f97bb961a91766b4046b3f2285a3f959 429 SUPERFAMILY SSF69593 12 192 1.27E-7 T 06-07-2017 APT55_RS22055 c3483826a295a1b77b9f0153d724788b 286 Pfam PF00427 Phycobilisome Linker polypeptide 27 151 6.0E-50 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS22055 c3483826a295a1b77b9f0153d724788b 286 SMART SM01094 234 286 1.1E-18 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS22055 c3483826a295a1b77b9f0153d724788b 286 Pfam PF01383 CpcD/allophycocyanin linker domain 234 285 1.3E-20 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS22055 c3483826a295a1b77b9f0153d724788b 286 PIRSF PIRSF005898 3 283 1.9E-76 T 06-07-2017 IPR016470 Phycobilisome linker protein GO:0015979|GO:0030089 APT55_RS22055 c3483826a295a1b77b9f0153d724788b 286 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 20 202 2.0E-66 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 ProSitePatterns PS00674 AAA-protein family signature. 217 235 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 SUPERFAMILY SSF52540 78 333 1.06E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Gene3D G3DSA:3.40.50.300 338 520 6.0E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Gene3D G3DSA:3.40.50.300 77 256 2.4E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 SMART SM00382 113 249 3.0E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 SMART SM00382 377 515 6.1E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 381 512 2.9E-41 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 117 246 4.5E-45 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Gene3D G3DSA:1.10.8.60 521 590 1.7E-15 T 06-07-2017 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 Gene3D G3DSA:1.10.8.60 257 330 8.4E-24 T 06-07-2017 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 ProSitePatterns PS00674 AAA-protein family signature. 483 501 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS09770 dbd30efbef7104de45071703ff7c5bfd 597 SUPERFAMILY SSF52540 339 574 2.51E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26075 63a637a74bfa80b72c4e8413485b96a1 141 Gene3D G3DSA:3.90.1570.10 17 133 5.9E-27 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS26075 63a637a74bfa80b72c4e8413485b96a1 141 Pfam PF05685 Putative restriction endonuclease 18 129 3.3E-17 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS26075 63a637a74bfa80b72c4e8413485b96a1 141 SUPERFAMILY SSF52980 11 133 4.77E-30 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS22305 2f13f96a61e30cdbbf45b79100b08db6 67 SUPERFAMILY SSF54580 1 66 1.44E-34 T 06-07-2017 IPR011064 Allophycocyanin linker chain GO:0015979|GO:0030089 APT55_RS22305 2f13f96a61e30cdbbf45b79100b08db6 67 SMART SM01094 1 56 3.0E-19 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS22305 2f13f96a61e30cdbbf45b79100b08db6 67 Gene3D G3DSA:3.30.1490.170 1 55 1.0E-38 T 06-07-2017 IPR011064 Allophycocyanin linker chain GO:0015979|GO:0030089 APT55_RS22305 2f13f96a61e30cdbbf45b79100b08db6 67 Pfam PF01383 CpcD/allophycocyanin linker domain 2 54 2.2E-16 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS22305 2f13f96a61e30cdbbf45b79100b08db6 67 PIRSF PIRSF000083 1 67 2.8E-44 T 06-07-2017 IPR011134 Allophycocyanin linker protein GO:0015979|GO:0030089 APT55_RS23315 3f60c041e63331a48a0734f36f364e5d 120 TIGRFAM TIGR02058 lin0512_fam: conserved hypothetical protein 4 116 7.3E-50 T 06-07-2017 IPR011719 Conserved hypothetical protein CHP02058 APT55_RS23315 3f60c041e63331a48a0734f36f364e5d 120 Gene3D G3DSA:3.30.1330.20 1 119 2.1E-47 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 APT55_RS23315 3f60c041e63331a48a0734f36f364e5d 120 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 5 116 1.6E-43 T 06-07-2017 IPR011719 Conserved hypothetical protein CHP02058 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.4E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.4E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.4E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 SUPERFAMILY SSF47729 1 90 2.21E-31 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 Gene3D G3DSA:4.10.520.10 1 90 4.4E-35 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 9.7E-32 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APT55_RS21285 730427626fb668b9453d3f2ffccd5985 92 SMART SM00411 1 90 1.2E-43 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS28610 80b1f8a58de93f2ac7e8043febe4c075 99 Pfam PF03811 InsA N-terminal domain 2 30 1.9E-7 T 06-07-2017 IPR003220 InsA N-terminal domain GO:0006313 APT55_RS23350 7247d05134e0658342b85424273b0772 458 Pfam PF00067 Cytochrome P450 15 435 1.5E-83 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 386 395 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 393 416 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 310 328 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 250 267 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 270 296 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 351 375 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00463 E-class P450 group I signature 383 393 7.7E-25 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 Gene3D G3DSA:1.10.630.10 10 443 1.2E-109 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 SUPERFAMILY SSF48264 12 441 1.24E-101 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00385 P450 superfamily signature 384 393 4.6E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00385 P450 superfamily signature 311 322 4.6E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00385 P450 superfamily signature 393 404 4.6E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23350 7247d05134e0658342b85424273b0772 458 PRINTS PR00385 P450 superfamily signature 261 278 4.6E-15 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 Gene3D G3DSA:3.30.300.30 365 458 6.9E-23 T 06-07-2017 APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 ProSitePatterns PS00455 Putative AMP-binding domain signature. 149 160 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 Gene3D G3DSA:3.40.50.980 144 294 2.8E-11 T 06-07-2017 APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 SUPERFAMILY SSF56801 45 459 1.44E-69 T 06-07-2017 APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 Pfam PF13193 AMP-binding enzyme C-terminal domain 376 450 6.1E-12 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain APT55_RS23645 9ae165535a928fe3763e52f1da00a2d7 468 Pfam PF00501 AMP-binding enzyme 45 366 4.0E-25 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PIRSF PIRSF000350 20 483 3.4E-96 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 201 226 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 367 388 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 165 174 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 327 334 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 285 299 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 426 441 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 67 82 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 33 55 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 448 468 3.2E-55 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Gene3D G3DSA:3.50.50.60 172 355 1.6E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 32 343 8.4E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Gene3D G3DSA:3.30.390.30 367 477 1.3E-28 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Gene3D G3DSA:3.50.50.60 29 94 3.6E-15 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Gene3D G3DSA:3.50.50.60 132 171 3.6E-15 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 371 473 3.7E-20 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 201 219 8.2E-30 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 34 53 8.2E-30 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 284 300 8.2E-30 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 312 334 8.2E-30 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 162 180 8.2E-30 T 06-07-2017 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 SUPERFAMILY SSF51905 21 386 2.75E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 SUPERFAMILY SSF55424 371 482 1.27E-27 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 68 78 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT55_RS21225 839caeefc559a4e4883e0ae442d19e48 497 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 202 230 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 18 200 1.3E-64 T 06-07-2017 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 Gene3D G3DSA:3.40.50.300 3 230 4.0E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 SUPERFAMILY SSF52540 3 232 5.33E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 Pfam PF00005 ABC transporter 21 168 8.2E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS05355 8be1624087d93be5275e0bb6fe9dc4bb 275 SMART SM00382 29 231 3.8E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Gene3D G3DSA:3.30.470.20 211 370 9.4E-55 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 PIRSF PIRSF000854 15 812 0.0 T 06-07-2017 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Pfam PF00391 PEP-utilising enzyme, mobile domain 405 476 2.7E-26 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Gene3D G3DSA:3.50.30.10 395 494 5.7E-36 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 20 812 0.0 T 06-07-2017 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Gene3D G3DSA:3.20.20.60 500 811 2.6E-107 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 SUPERFAMILY SSF52009 371 488 1.83E-33 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 716 734 - T 06-07-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 SUPERFAMILY SSF51621 486 811 3.93E-100 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 493 811 1.2E-63 T 06-07-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 33 365 1.0E-121 T 06-07-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 Gene3D G3DSA:3.30.1490.20 19 209 3.0E-70 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 SUPERFAMILY SSF56059 18 406 1.18E-108 T 06-07-2017 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 435 446 - T 06-07-2017 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 769 781 9.1E-5 T 06-07-2017 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 733 748 9.1E-5 T 06-07-2017 APT55_RS17895 cd9412e80b2f184871a64c80db383461 812 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 716 731 9.1E-5 T 06-07-2017 APT55_RS28485 a7e35a50ec579374e96485fa4524b1ff 170 SUPERFAMILY SSF69318 38 169 1.03E-18 T 06-07-2017 APT55_RS28485 a7e35a50ec579374e96485fa4524b1ff 170 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 59 123 5.2E-12 T 06-07-2017 APT55_RS28485 a7e35a50ec579374e96485fa4524b1ff 170 Gene3D G3DSA:2.130.10.130 35 169 6.5E-12 T 06-07-2017 APT55_RS20415 14af9dfc0451d4d7fb5c6492199a674c 401 Pfam PF07007 Protein of unknown function (DUF1311) 246 331 4.7E-13 T 06-07-2017 IPR009739 Protein of unknown function DUF1311 APT55_RS20415 14af9dfc0451d4d7fb5c6492199a674c 401 Pfam PF07007 Protein of unknown function (DUF1311) 78 144 4.3E-5 T 06-07-2017 IPR009739 Protein of unknown function DUF1311 APT55_RS00420 56f2092945f39108f587e69a97194cdb 283 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 26 274 3.1E-100 T 06-07-2017 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 APT55_RS00420 56f2092945f39108f587e69a97194cdb 283 Pfam PF03575 Peptidase family S51 26 230 2.6E-22 T 06-07-2017 IPR005320 Peptidase S51 GO:0006508|GO:0008236 APT55_RS00420 56f2092945f39108f587e69a97194cdb 283 PIRSF PIRSF032067 8 281 2.7E-76 T 06-07-2017 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 APT55_RS00420 56f2092945f39108f587e69a97194cdb 283 SUPERFAMILY SSF52317 26 239 5.1E-27 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS00420 56f2092945f39108f587e69a97194cdb 283 Gene3D G3DSA:3.40.50.880 28 243 2.5E-29 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS13955 fd7cf7349c7d336ecec47f43ec42940c 401 ProDom PD191273 TC0311 EXPORTED CT041 CPN0389/CP0366/CPJ0389/CPB0400 104 174 2.0E-6 T 06-07-2017 APT55_RS13955 fd7cf7349c7d336ecec47f43ec42940c 401 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 135 390 9.3E-74 T 06-07-2017 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 APT55_RS13955 fd7cf7349c7d336ecec47f43ec42940c 401 Pfam PF08486 Stage II sporulation protein 132 222 4.3E-26 T 06-07-2017 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal APT55_RS02265 fc9aa0cd181cde9ad29ff9e3f60f2753 184 SUPERFAMILY SSF52141 17 176 9.16E-39 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS02265 fc9aa0cd181cde9ad29ff9e3f60f2753 184 Pfam PF03167 Uracil DNA glycosylase superfamily 20 164 6.8E-25 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS02265 fc9aa0cd181cde9ad29ff9e3f60f2753 184 Gene3D G3DSA:3.40.470.10 17 177 2.2E-49 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 Pfam PF09295 ChAPs (Chs5p-Arf1p-binding proteins) 46 102 2.0E-5 T 06-07-2017 IPR015374 Chs5p-Arf1p binding APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 Gene3D G3DSA:1.25.40.10 130 243 4.0E-27 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SMART SM00028 214 247 150.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SMART SM00028 145 178 8.7E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SMART SM00028 77 110 0.085 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SMART SM00028 111 144 0.07 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SMART SM00028 179 212 0.0027 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 Pfam PF13432 Tetratricopeptide repeat 185 244 0.0016 T 06-07-2017 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 Pfam PF13414 TPR repeat 118 158 8.6E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 SUPERFAMILY SSF48452 46 212 1.45E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS19105 89daf582fcf84f504e1f81a06a87059e 295 Gene3D G3DSA:1.25.40.10 46 129 2.5E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 SUPERFAMILY SSF52172 2 132 4.13E-43 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 3.9E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 SMART SM00862 153 229 3.9E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 SUPERFAMILY SSF46894 125 230 2.58E-27 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 Pfam PF00072 Response regulator receiver domain 3 115 3.1E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 SMART SM00448 1 114 3.0E-45 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 Gene3D G3DSA:1.10.10.10 126 231 1.6E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13115 b7b43a3c62189cdb3599e8d5c43d77b1 234 Gene3D G3DSA:3.40.50.2300 1 125 7.3E-43 T 06-07-2017 APT55_RS17485 3bc6446742ba63a6c2917299c96cb05d 175 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 06-07-2017 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS17485 3bc6446742ba63a6c2917299c96cb05d 175 Pfam PF00466 Ribosomal protein L10 4 102 7.1E-25 T 06-07-2017 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 APT55_RS17485 3bc6446742ba63a6c2917299c96cb05d 175 SUPERFAMILY SSF160369 4 172 5.49E-48 T 06-07-2017 APT55_RS17485 3bc6446742ba63a6c2917299c96cb05d 175 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 8 144 0.005 T 06-07-2017 APT55_RS17485 3bc6446742ba63a6c2917299c96cb05d 175 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 23.293 T 06-07-2017 IPR022973 Ribosomal protein L10 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 Gene3D G3DSA:3.10.290.10 4 101 7.4E-26 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 SUPERFAMILY SSF53335 51 246 2.08E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 5 239 1.4E-90 T 06-07-2017 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 SUPERFAMILY SSF55174 3 99 1.44E-22 T 06-07-2017 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 Pfam PF01728 FtsJ-like methyltransferase 59 243 8.8E-18 T 06-07-2017 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 SMART SM00363 4 65 4.6E-13 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 Pfam PF01479 S4 domain 4 51 8.6E-13 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 APT55_RS23800 b5e11032f78012827296b8d543dd1288 272 PIRSF PIRSF005578 1 266 2.4E-104 T 06-07-2017 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 PIRSF PIRSF016184 1 294 9.3E-84 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 SUPERFAMILY SSF54506 1 293 3.14E-66 T 06-07-2017 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 Gene3D G3DSA:3.10.310.10 126 276 2.8E-42 T 06-07-2017 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 292 8.9E-71 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 Pfam PF02567 Phenazine biosynthesis-like protein 8 291 4.6E-62 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT55_RS26145 29764845c09ba609bb9357c07549c968 294 Gene3D G3DSA:3.10.310.10 3 125 2.6E-40 T 06-07-2017 APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 198 213 2.8E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 198 2.8E-6 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 SUPERFAMILY SSF46785 156 227 1.97E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 SMART SM00419 176 225 1.3E-7 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 ProSitePatterns PS00042 Crp-type HTH domain signature. 184 207 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 Gene3D G3DSA:1.10.10.10 157 221 1.9E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00870 7db3015d1ca8bf831c78c3cc9bb649cf 239 Pfam PF00325 Bacterial regulatory proteins, crp family 183 213 2.3E-11 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS21400 27a007939891b2a9734542de5f125463 99 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 85 5.2E-23 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS21400 27a007939891b2a9734542de5f125463 99 SUPERFAMILY SSF54292 4 95 1.57E-33 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS21400 27a007939891b2a9734542de5f125463 99 Gene3D G3DSA:3.10.20.30 3 99 9.8E-41 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS21400 27a007939891b2a9734542de5f125463 99 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS21400 27a007939891b2a9734542de5f125463 99 TIGRFAM TIGR02008 fdx_plant: ferredoxin [2Fe-2S] 3 99 3.1E-53 T 06-07-2017 IPR010241 Ferredoxin [2Fe-2S], plant GO:0009055|GO:0022900|GO:0051537 APT55_RS19970 c9dec7b9dfa677f8a2f21279ef3ecb23 131 Pfam PF12680 SnoaL-like domain 19 118 2.0E-11 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain APT55_RS19970 c9dec7b9dfa677f8a2f21279ef3ecb23 131 Gene3D G3DSA:3.10.450.50 9 124 7.9E-26 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS19970 c9dec7b9dfa677f8a2f21279ef3ecb23 131 SUPERFAMILY SSF54427 8 128 2.4E-32 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 32 135 2.5E-8 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 261 373 1.4E-6 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 Gene3D G3DSA:1.20.140.10 235 377 2.7E-13 T 06-07-2017 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 Gene3D G3DSA:1.10.540.10 37 136 7.4E-16 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 SUPERFAMILY SSF47203 286 375 1.22E-6 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 SUPERFAMILY SSF56645 24 242 5.5E-35 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 APT55_RS07085 004639281133dae6405ea0ecbb7aa035 392 Gene3D G3DSA:2.40.110.10 151 234 8.3E-14 T 06-07-2017 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 Gene3D G3DSA:1.10.760.10 29 162 7.5E-40 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 TIGRFAM TIGR03045 PS_II_C550: cytochrome c-550 2 160 1.1E-73 T 06-07-2017 IPR017851 Photosystem II PsbV, cytochrome c-550 precursor GO:0009523|GO:0015979|GO:0020037|GO:0042651 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 SUPERFAMILY SSF46626 44 156 7.26E-27 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 SUPERFAMILY SSF46626 1 17 7.26E-27 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 PIRSF PIRSF005890 1 163 5.4E-72 T 06-07-2017 IPR016003 Photosystem II cytochrome c-550 precursor GO:0005506|GO:0009523|GO:0015979|GO:0020037|GO:0022904 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 Hamap MF_01378 Cytochrome c-550 [psbV]. 2 163 42.33 T 06-07-2017 IPR017851 Photosystem II PsbV, cytochrome c-550 precursor GO:0009523|GO:0015979|GO:0020037|GO:0042651 APT55_RS03385 35b6e6719b0a27185c708ca9ba121bb2 163 Pfam PF14495 Cytochrome c-550 domain 28 163 4.1E-58 T 06-07-2017 IPR029490 Cytochrome c-550 domain APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 SUPERFAMILY SSF53720 4 453 1.7E-109 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 Gene3D G3DSA:3.40.605.10 4 237 7.3E-47 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 Pfam PF00171 Aldehyde dehydrogenase family 24 449 8.9E-103 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 223 230 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 Gene3D G3DSA:3.40.309.10 238 415 1.3E-58 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 APT55_RS20000 f5356df9ab9b5943257a433cb5cfbf09 465 PIRSF PIRSF036492 22 463 6.1E-84 T 06-07-2017 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 APT55_RS22695 193035de2cb3c829f4e7b11a49849344 96 Pfam PF01169 Uncharacterized protein family UPF0016 9 83 4.2E-21 T 06-07-2017 IPR001727 Gdt1 family GO:0032472 APT55_RS23210 1862d5cca30b2524ce9e18eda4da35cd 117 Pfam PF06305 Protein of unknown function (DUF1049) 22 89 1.6E-15 T 06-07-2017 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 APT55_RS30500 7c7d2ebe9a7bdae80e012ac54ace67eb 1074 Gene3D G3DSA:1.10.10.60 936 975 7.0E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS06555 38d7a0c5106629df0ba9cd5cd129cfb5 178 SUPERFAMILY SSF81930 6 171 3.79E-58 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS06555 38d7a0c5106629df0ba9cd5cd129cfb5 178 Pfam PF09150 Orange carotenoid protein, N-terminal 15 161 3.9E-60 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS06555 38d7a0c5106629df0ba9cd5cd129cfb5 178 Gene3D G3DSA:1.10.2090.10 17 165 2.4E-57 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 SUPERFAMILY SSF51445 89 454 1.64E-85 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 462 514 2.2E-6 T 06-07-2017 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 SMART SM00642 111 447 1.6E-16 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 3 67 6.3E-10 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 SUPERFAMILY SSF51011 458 529 2.75E-9 T 06-07-2017 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Pfam PF00128 Alpha amylase, catalytic domain 133 209 4.7E-19 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Pfam PF00128 Alpha amylase, catalytic domain 236 413 2.6E-10 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 SUPERFAMILY SSF81296 3 83 1.68E-14 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Gene3D G3DSA:2.60.40.1180 458 529 9.8E-9 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Gene3D G3DSA:3.20.20.80 93 455 4.6E-80 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS22875 7a2b757ff8d11a9e65f2160e97f6d275 531 Gene3D G3DSA:2.60.40.10 3 80 2.2E-14 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 SMART SM00245 187 378 3.5E-86 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 Gene3D G3DSA:2.30.42.10 121 195 2.6E-26 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 Pfam PF13180 PDZ domain 117 194 1.6E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 64 383 7.5E-111 T 06-07-2017 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 Pfam PF03572 Peptidase family S41 216 376 6.4E-53 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 Gene3D G3DSA:3.30.750.44 32 120 1.4E-34 T 06-07-2017 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 SUPERFAMILY SSF52096 33 134 4.97E-75 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 SUPERFAMILY SSF52096 209 383 4.97E-75 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 SUPERFAMILY SSF50156 85 207 5.59E-22 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 SMART SM00228 114 187 5.4E-14 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS18085 34972a3e11ee1670a6dffd53d71d3295 412 Gene3D G3DSA:3.90.226.10 196 405 7.9E-61 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS11150 1f9ce9f2991a02a8cef2829b8f5e1a6f 238 Pfam PF00535 Glycosyl transferase family 2 9 148 2.0E-34 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS11150 1f9ce9f2991a02a8cef2829b8f5e1a6f 238 Gene3D G3DSA:3.90.550.10 6 215 1.5E-56 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11150 1f9ce9f2991a02a8cef2829b8f5e1a6f 238 SUPERFAMILY SSF53448 6 207 3.0E-60 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS14790 cf403cc30a1eb5f9d3d9ebcd97a5116f 178 Pfam PF00156 Phosphoribosyl transferase domain 7 166 2.3E-22 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS14790 cf403cc30a1eb5f9d3d9ebcd97a5116f 178 Gene3D G3DSA:3.40.50.2020 8 171 3.5E-47 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS14790 cf403cc30a1eb5f9d3d9ebcd97a5116f 178 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 5 177 35.316 T 06-07-2017 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT55_RS14790 cf403cc30a1eb5f9d3d9ebcd97a5116f 178 SUPERFAMILY SSF53271 8 170 1.11E-40 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS28665 303b46784903509b7abd67a0867b08bf 83 Gene3D G3DSA:3.50.50.60 2 68 6.4E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28665 303b46784903509b7abd67a0867b08bf 83 SUPERFAMILY SSF51905 3 69 9.84E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28790 ed8a66e169080544109e0ef2d3e189d7 118 SUPERFAMILY SSF54909 1 112 1.15E-33 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS28790 ed8a66e169080544109e0ef2d3e189d7 118 Gene3D G3DSA:3.30.70.1060 1 112 1.4E-38 T 06-07-2017 APT55_RS28790 ed8a66e169080544109e0ef2d3e189d7 118 Pfam PF03795 YCII-related domain 1 112 3.3E-25 T 06-07-2017 IPR005545 YCII-related APT55_RS27905 0731902cb31e6f44fe0687e9131499e4 254 Gene3D G3DSA:3.90.550.10 8 97 1.4E-11 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27905 0731902cb31e6f44fe0687e9131499e4 254 SUPERFAMILY SSF53448 2 96 2.61E-19 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27905 0731902cb31e6f44fe0687e9131499e4 254 Pfam PF00535 Glycosyl transferase family 2 8 95 4.5E-15 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS24395 5aa9cb78eb81a92aaac433add7088ba3 328 Pfam PF00535 Glycosyl transferase family 2 4 183 1.7E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS24395 5aa9cb78eb81a92aaac433add7088ba3 328 SUPERFAMILY SSF53448 3 239 3.81E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24395 5aa9cb78eb81a92aaac433add7088ba3 328 Gene3D G3DSA:3.90.550.10 2 262 6.7E-40 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00225 9b2948dec19884dc1e1eda20d16b8bc8 303 Gene3D G3DSA:3.30.420.40 142 279 5.8E-43 T 06-07-2017 APT55_RS00225 9b2948dec19884dc1e1eda20d16b8bc8 303 SUPERFAMILY SSF53067 7 294 5.71E-63 T 06-07-2017 APT55_RS00225 9b2948dec19884dc1e1eda20d16b8bc8 303 Pfam PF00480 ROK family 8 293 1.0E-63 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APT55_RS00225 9b2948dec19884dc1e1eda20d16b8bc8 303 Gene3D G3DSA:3.30.420.40 6 141 3.1E-41 T 06-07-2017 APT55_RS25855 c7ff8947a25c1c9f58809efc5604e8ab 314 SMART SM00382 31 216 2.4E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25855 c7ff8947a25c1c9f58809efc5604e8ab 314 SUPERFAMILY SSF52540 6 230 3.06E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25855 c7ff8947a25c1c9f58809efc5604e8ab 314 Pfam PF00005 ABC transporter 23 166 4.0E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25855 c7ff8947a25c1c9f58809efc5604e8ab 314 Gene3D G3DSA:3.40.50.300 6 231 6.6E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 SUPERFAMILY SSF51905 6 344 4.37E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 2.3E-13 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 2.3E-13 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 2.3E-13 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.3E-13 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 Gene3D G3DSA:3.50.50.60 9 111 2.9E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 4.4E-9 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 4.4E-9 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 4.4E-9 T 06-07-2017 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 10 335 1.3E-57 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26030 d543cb9911b96735d7f78b7c038408e9 446 Gene3D G3DSA:3.50.50.60 112 342 5.8E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00570 48f0b1973cf66640db0553f1717d1a6f 183 Gene3D G3DSA:3.40.1000.10 28 182 5.7E-52 T 06-07-2017 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 APT55_RS00570 48f0b1973cf66640db0553f1717d1a6f 183 Pfam PF01789 PsbP 14 182 3.4E-60 T 06-07-2017 IPR002683 PsbP family GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898 APT55_RS00570 48f0b1973cf66640db0553f1717d1a6f 183 SUPERFAMILY SSF55724 31 182 1.88E-44 T 06-07-2017 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 APT55_RS23295 3498c03933a8c67cbb18db943f1df74e 111 SUPERFAMILY SSF143847 1 111 1.7E-44 T 06-07-2017 IPR014968 XisI protein APT55_RS23295 3498c03933a8c67cbb18db943f1df74e 111 Pfam PF08869 XisI protein 1 110 4.8E-44 T 06-07-2017 IPR014968 XisI protein APT55_RS23295 3498c03933a8c67cbb18db943f1df74e 111 Gene3D G3DSA:3.30.310.110 1 111 1.4E-45 T 06-07-2017 IPR014968 XisI protein APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 SUPERFAMILY SSF53271 87 321 4.04E-64 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 SMART SM01400 22 138 3.3E-73 T 06-07-2017 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 Gene3D G3DSA:3.40.50.2020 177 301 3.2E-53 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 146 161 - T 06-07-2017 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 Pfam PF14572 Phosphoribosyl synthetase-associated domain 221 330 3.8E-27 T 06-07-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 23 330 1.1E-126 T 06-07-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 23 138 9.2E-46 T 06-07-2017 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 22 330 48.973 T 06-07-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT55_RS21455 c98b2e4a94ae02c833120256192de0cc 330 Gene3D G3DSA:3.40.50.2020 19 176 6.2E-72 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS26455 c94d432b02a73d1b4330c0c2fdf8ff57 318 Pfam PF04015 Domain of unknown function (DUF362) 42 239 1.1E-43 T 06-07-2017 IPR007160 Domain of unknown function DUF362 APT55_RS18825 74a46551e994c47dc4fb704171a284cd 340 Pfam PF13531 Bacterial extracellular solute-binding protein 40 292 3.3E-37 T 06-07-2017 APT55_RS18825 74a46551e994c47dc4fb704171a284cd 340 Gene3D G3DSA:3.40.190.10 48 138 3.6E-10 T 06-07-2017 APT55_RS18825 74a46551e994c47dc4fb704171a284cd 340 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 35 332 2.7E-74 T 06-07-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT55_RS18825 74a46551e994c47dc4fb704171a284cd 340 Gene3D G3DSA:3.40.190.10 139 290 1.5E-54 T 06-07-2017 APT55_RS18825 74a46551e994c47dc4fb704171a284cd 340 SUPERFAMILY SSF53850 36 334 4.51E-68 T 06-07-2017 APT55_RS21370 b8f3edbc82d85f1611695d488091375f 304 SUPERFAMILY SSF103481 58 151 1.44E-13 T 06-07-2017 APT55_RS21370 b8f3edbc82d85f1611695d488091375f 304 Pfam PF00892 EamA-like transporter family 16 147 3.8E-7 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS21370 b8f3edbc82d85f1611695d488091375f 304 Pfam PF00892 EamA-like transporter family 162 296 1.4E-14 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS21370 b8f3edbc82d85f1611695d488091375f 304 SUPERFAMILY SSF103481 200 300 4.84E-14 T 06-07-2017 APT55_RS15990 574e82d13b589f6f117bcbbf3cb8e5f3 1196 Pfam PF08707 Primase C terminal 2 (PriCT-2) 253 331 5.5E-5 T 06-07-2017 IPR014819 Primase, C-terminal 2 GO:0016817 APT55_RS15990 574e82d13b589f6f117bcbbf3cb8e5f3 1196 SMART SM00943 27 209 0.0013 T 06-07-2017 IPR015330 DNA primase/polymerase, bifunctional, N-terminal APT55_RS15990 574e82d13b589f6f117bcbbf3cb8e5f3 1196 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 36 208 2.2E-16 T 06-07-2017 IPR015330 DNA primase/polymerase, bifunctional, N-terminal APT55_RS29215 4cd51391b0b6d2d4a8a80e493b6a0d5e 315 Gene3D G3DSA:3.40.50.720 2 244 1.1E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS29215 4cd51391b0b6d2d4a8a80e493b6a0d5e 315 SUPERFAMILY SSF51735 1 278 3.5E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS29215 4cd51391b0b6d2d4a8a80e493b6a0d5e 315 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 219 2.3E-14 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS15210 f6c89c803b2b20649d66b7174681e495 123 Pfam PF01925 Sulfite exporter TauE/SafE 5 118 9.5E-21 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 Gene3D G3DSA:1.25.40.10 28 218 1.2E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 Gene3D G3DSA:1.25.40.10 255 327 1.2E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SUPERFAMILY SSF48452 249 328 1.81E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SUPERFAMILY SSF48452 142 182 1.81E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 Pfam PF12770 CHAT domain 468 735 1.1E-64 T 06-07-2017 IPR024983 CHAT domain APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SUPERFAMILY SSF48452 16 202 3.6E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SMART SM00028 30 63 16.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SMART SM00028 300 333 310.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SMART SM00028 108 141 220.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SMART SM00028 260 293 0.49 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07395 aacdb9943dba4bb2a3a301a32fde90eb 738 SMART SM00028 148 181 62.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 Gene3D G3DSA:3.50.50.60 124 213 6.2E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 Gene3D G3DSA:3.50.50.60 289 345 6.2E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 Gene3D G3DSA:3.50.50.60 3 81 6.2E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 SUPERFAMILY SSF54373 200 288 7.32E-20 T 06-07-2017 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 331 1.2E-97 T 06-07-2017 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 SUPERFAMILY SSF51905 289 345 3.37E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 SUPERFAMILY SSF51905 4 202 3.37E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17630 7cc763b127faed830309ae4266bffbd8 346 Pfam PF01266 FAD dependent oxidoreductase 5 326 1.1E-61 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 Gene3D G3DSA:1.25.40.10 443 543 1.4E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 Gene3D G3DSA:1.25.40.10 55 217 1.1E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 Gene3D G3DSA:1.25.40.10 544 715 1.1E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 SUPERFAMILY SSF48452 209 406 1.48E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 SUPERFAMILY SSF48452 442 567 9.21E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 SUPERFAMILY SSF48452 633 718 9.21E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01190 d140d22396f834cebf09403a6dbe58ae 742 Gene3D G3DSA:1.25.40.10 229 409 3.3E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS31190 fc03205debe296ee33c2cc1f6fa36039 183 Gene3D G3DSA:3.40.50.1820 3 87 3.2E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS31190 fc03205debe296ee33c2cc1f6fa36039 183 Gene3D G3DSA:3.40.50.1820 144 151 3.2E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS31190 fc03205debe296ee33c2cc1f6fa36039 183 SUPERFAMILY SSF53474 3 180 9.16E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 50 333 8.9E-106 T 06-07-2017 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 28 95 5.8E-24 T 06-07-2017 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 SUPERFAMILY SSF55681 100 333 5.17E-78 T 06-07-2017 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 Gene3D G3DSA:3.30.930.10 16 333 4.7E-125 T 06-07-2017 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 16 333 46.504 T 06-07-2017 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 SUPERFAMILY SSF46589 21 106 6.28E-21 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 APT55_RS20885 2db9d98e653819967589cbabcaf2649a 333 Pfam PF01409 tRNA synthetases class II core domain (F) 100 333 1.2E-98 T 06-07-2017 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 SUPERFAMILY SSF51338 1 59 8.64E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 SUPERFAMILY SSF51556 51 371 5.19E-73 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 Gene3D G3DSA:2.30.40.10 356 425 5.2E-7 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 Gene3D G3DSA:3.20.20.140 58 355 4.4E-76 T 06-07-2017 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 Pfam PF01979 Amidohydrolase family 49 417 4.5E-49 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 SUPERFAMILY SSF51338 352 435 1.35E-17 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS07905 6f315a7d1edfb80ca11e5e01ee146108 475 Gene3D G3DSA:2.30.40.10 4 57 1.4E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 12 306 4.6E-110 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 240 256 - T 06-07-2017 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PRINTS PR00151 Porphobilinogen deaminase signature 152 169 1.9E-49 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PRINTS PR00151 Porphobilinogen deaminase signature 133 150 1.9E-49 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PRINTS PR00151 Porphobilinogen deaminase signature 239 256 1.9E-49 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PRINTS PR00151 Porphobilinogen deaminase signature 51 71 1.9E-49 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PRINTS PR00151 Porphobilinogen deaminase signature 82 101 1.9E-49 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 12 222 1.6E-79 T 06-07-2017 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 11 306 37.34 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 SUPERFAMILY SSF53850 10 228 5.2E-82 T 06-07-2017 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 PIRSF PIRSF001438 1 320 1.6E-122 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 235 304 6.6E-21 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Gene3D G3DSA:3.30.160.40 230 314 1.4E-30 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Gene3D G3DSA:3.40.190.10 116 208 9.8E-38 T 06-07-2017 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 Gene3D G3DSA:3.40.190.10 10 115 2.4E-48 T 06-07-2017 APT55_RS00805 e3dae071d9c4f80690132dfafa73efc0 322 SUPERFAMILY SSF54782 230 318 4.05E-27 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT55_RS28460 46144d334a76b242c57d74b93ca31e94 141 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 66 139 1.7E-9 T 06-07-2017 IPR010221 VCBS repeat APT55_RS28085 e1050c91f64bc2c65bfe9bca5833613f 344 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 31 334 9.6E-119 T 06-07-2017 IPR017804 Methyltransferase EgtD-like APT55_RS28085 e1050c91f64bc2c65bfe9bca5833613f 344 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 207 331 6.8E-40 T 06-07-2017 IPR019257 Histidine-specific methyltransferase, SAM-dependent APT55_RS28085 e1050c91f64bc2c65bfe9bca5833613f 344 Gene3D G3DSA:3.40.50.150 57 208 0.001 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28085 e1050c91f64bc2c65bfe9bca5833613f 344 SUPERFAMILY SSF53335 52 205 2.78E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28085 e1050c91f64bc2c65bfe9bca5833613f 344 PIRSF PIRSF018005 7 337 2.3E-121 T 06-07-2017 IPR017804 Methyltransferase EgtD-like APT55_RS26585 6302bb99df66def367583cd2cd9b188e 206 Pfam PF06314 Acetoacetate decarboxylase (ADC) 17 118 1.9E-15 T 06-07-2017 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 APT55_RS26585 6302bb99df66def367583cd2cd9b188e 206 SUPERFAMILY SSF160104 3 118 7.72E-22 T 06-07-2017 APT55_RS26585 6302bb99df66def367583cd2cd9b188e 206 Gene3D G3DSA:2.40.400.10 3 118 2.6E-18 T 06-07-2017 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 APT55_RS07280 061e2cf9d9ba05c71c16ce5572ea6f31 136 Pfam PF01475 Ferric uptake regulator family 9 125 4.5E-20 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT55_RS07280 061e2cf9d9ba05c71c16ce5572ea6f31 136 Gene3D G3DSA:1.10.10.10 7 77 1.5E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS07280 061e2cf9d9ba05c71c16ce5572ea6f31 136 SUPERFAMILY SSF46785 9 129 1.49E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Gene3D G3DSA:2.40.30.10 323 422 8.9E-34 T 06-07-2017 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SUPERFAMILY SSF50447 283 418 9.9E-34 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Hamap MF_00054_B Elongation factor G [fusA]. 6 708 106.699 T 06-07-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Pfam PF14492 Elongation Factor G, domain II 421 494 9.8E-34 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SUPERFAMILY SSF54980 421 498 3.6E-25 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SUPERFAMILY SSF54980 617 707 1.2E-27 T 06-07-2017 IPR009022 Elongation factor G, III-V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Gene3D G3DSA:3.30.70.240 615 708 9.5E-32 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SMART SM00838 617 704 1.2E-51 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Gene3D G3DSA:3.30.230.10 501 614 7.7E-50 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.9E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 PRINTS PR00315 GTP-binding elongation factor signature 109 120 2.9E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.9E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 PRINTS PR00315 GTP-binding elongation factor signature 145 154 2.9E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 PRINTS PR00315 GTP-binding elongation factor signature 93 103 2.9E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Pfam PF00679 Elongation factor G C-terminus 617 703 1.3E-29 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Gene3D G3DSA:3.40.50.300 7 305 1.1E-100 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SUPERFAMILY SSF54211 496 616 1.26E-43 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Pfam PF03764 Elongation factor G, domain IV 496 615 2.3E-45 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Pfam PF00009 Elongation factor Tu GTP binding domain 9 300 6.9E-65 T 06-07-2017 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SMART SM00889 497 615 1.0E-68 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 195 7.5E-33 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Gene3D G3DSA:3.30.70.870 423 497 7.3E-37 T 06-07-2017 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 SUPERFAMILY SSF52540 6 300 1.57E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 709 0.0 T 06-07-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT55_RS16600 947e4dacce84f2019494b1edce5a66ed 712 Pfam PF03144 Elongation factor Tu domain 2 341 408 7.2E-16 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 78 89 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 Pfam PF02754 Cysteine-rich domain 330 413 3.6E-15 T 06-07-2017 IPR004017 Cysteine-rich domain APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 Pfam PF02754 Cysteine-rich domain 198 280 1.1E-16 T 06-07-2017 IPR004017 Cysteine-rich domain APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 Gene3D G3DSA:1.10.1060.10 23 108 3.1E-19 T 06-07-2017 APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 27 38 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 Pfam PF13183 4Fe-4S dicluster domain 25 92 2.0E-11 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 PIRSF PIRSF000139 12 441 5.1E-133 T 06-07-2017 IPR012257 Glycolate oxidase, iron-sulphur subunit APT55_RS04870 6fec2563e4f7e30f943430b6f93a94b0 442 SUPERFAMILY SSF54862 24 118 4.18E-18 T 06-07-2017 APT55_RS15115 a30a5f0c18534c91a3fdb542661e3388 319 SUPERFAMILY SSF57997 122 256 7.85E-5 T 06-07-2017 APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 Gene3D G3DSA:3.30.450.40 152 294 5.8E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 SMART SM00448 24 136 6.2E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 Pfam PF13185 GAF domain 222 293 3.3E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 Pfam PF00072 Response regulator receiver domain 27 136 9.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 Gene3D G3DSA:3.40.50.2300 25 151 9.4E-31 T 06-07-2017 APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 SUPERFAMILY SSF52172 22 160 6.4E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12455 b54da415512d8b9aae0710cbc260ac1e 305 SUPERFAMILY SSF55781 146 293 1.18E-14 T 06-07-2017 IPR029016 GAF domain-like APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 73 319 2.2E-51 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 SUPERFAMILY SSF51419 57 320 6.41E-76 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 SUPERFAMILY SSF50621 295 456 3.77E-52 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01181 Diaminopimelate decarboxylase signature 420 442 3.4E-24 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01181 Diaminopimelate decarboxylase signature 109 126 3.4E-24 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01181 Diaminopimelate decarboxylase signature 338 356 3.4E-24 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01181 Diaminopimelate decarboxylase signature 195 204 3.4E-24 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 37 452 3.3E-146 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 255 272 - T 06-07-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 221 234 4.0E-18 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 309 328 4.0E-18 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 111 123 4.0E-18 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 410 423 4.0E-18 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 91 109 4.0E-18 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 46 453 36.433 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 331 430 1.5E-16 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 Gene3D G3DSA:2.40.37.10 305 457 8.2E-50 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS11220 94801425cc4b190d762ac6cbc3cd0f27 459 Gene3D G3DSA:3.20.20.10 67 304 2.1E-79 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 Gene3D G3DSA:1.20.1050.10 91 211 4.7E-44 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 Pfam PF02798 Glutathione S-transferase, N-terminal domain 14 79 6.9E-10 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 Gene3D G3DSA:3.40.30.10 9 87 4.3E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 SUPERFAMILY SSF52833 6 88 5.18E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 Pfam PF13410 Glutathione S-transferase, C-terminal domain 129 206 2.7E-6 T 06-07-2017 APT55_RS04950 6043a41c503cb75a931c45504a2d5e28 216 SUPERFAMILY SSF47616 87 206 2.84E-15 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS27250 104e6cc0caaa0c2aaf9c49be78b9022e 343 Gene3D G3DSA:3.40.50.970 14 342 1.4E-135 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS27250 104e6cc0caaa0c2aaf9c49be78b9022e 343 Pfam PF00676 Dehydrogenase E1 component 28 332 7.0E-86 T 06-07-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 APT55_RS27250 104e6cc0caaa0c2aaf9c49be78b9022e 343 SUPERFAMILY SSF52518 16 342 4.52E-104 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS27250 104e6cc0caaa0c2aaf9c49be78b9022e 343 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 20 341 8.0E-145 T 06-07-2017 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT55_RS18860 6379e6ccee47c8a9e921176e33e574e1 301 Gene3D G3DSA:3.20.20.100 14 297 1.5E-70 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS18860 6379e6ccee47c8a9e921176e33e574e1 301 Pfam PF00248 Aldo/keto reductase family 25 297 6.5E-62 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS18860 6379e6ccee47c8a9e921176e33e574e1 301 SUPERFAMILY SSF51430 14 297 6.15E-69 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS22770 16270363fcbb4ece5b4980b1a49845fb 332 SUPERFAMILY SSF51735 6 154 5.19E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22770 16270363fcbb4ece5b4980b1a49845fb 332 SUPERFAMILY SSF55347 130 265 2.62E-23 T 06-07-2017 APT55_RS22770 16270363fcbb4ece5b4980b1a49845fb 332 Gene3D G3DSA:3.30.360.10 143 323 2.0E-23 T 06-07-2017 APT55_RS22770 16270363fcbb4ece5b4980b1a49845fb 332 Gene3D G3DSA:3.40.50.720 1 142 3.2E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22770 16270363fcbb4ece5b4980b1a49845fb 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 124 1.2E-21 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS02530 0107c01b1dc83042fc68c6b8f9db58fe 191 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 155 4.7E-53 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS02530 0107c01b1dc83042fc68c6b8f9db58fe 191 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 153 1.5E-52 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS02530 0107c01b1dc83042fc68c6b8f9db58fe 191 Gene3D G3DSA:3.40.50.960 6 159 1.0E-59 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS02530 0107c01b1dc83042fc68c6b8f9db58fe 191 SUPERFAMILY SSF52121 7 158 1.44E-55 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS02530 0107c01b1dc83042fc68c6b8f9db58fe 191 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 157 28.857 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS21685 07ae51b2fc08d72f14219051b186c967 48 SUPERFAMILY SSF81301 4 47 3.57E-11 T 06-07-2017 APT55_RS21685 07ae51b2fc08d72f14219051b186c967 48 Gene3D G3DSA:3.30.460.10 9 48 7.9E-12 T 06-07-2017 APT55_RS21685 07ae51b2fc08d72f14219051b186c967 48 Pfam PF01909 Nucleotidyltransferase domain 15 46 1.2E-8 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 8.9E-165 T 06-07-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 SMART SM01329 6 355 2.0E-208 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 06-07-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 SUPERFAMILY SSF53659 4 359 7.1E-123 T 06-07-2017 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 52.245 T 06-07-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 Gene3D G3DSA:3.40.718.10 2 359 6.1E-132 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS25675 23e1ed1ab31cb091142ba8ee3553b7de 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 354 6.2E-141 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS17080 e7bbf74177c1bb3dfb914ec7bfa607fd 225 TIGRFAM TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated 3 217 1.8E-80 T 06-07-2017 IPR026461 Transferase 2, rSAM/selenodomain-associated APT55_RS17080 e7bbf74177c1bb3dfb914ec7bfa607fd 225 Gene3D G3DSA:3.90.550.10 1 180 2.1E-26 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS17080 e7bbf74177c1bb3dfb914ec7bfa607fd 225 SUPERFAMILY SSF53448 1 187 3.16E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS17080 e7bbf74177c1bb3dfb914ec7bfa607fd 225 Pfam PF00535 Glycosyl transferase family 2 4 131 1.9E-19 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS28540 5cfdaa32342a2d396c8151c8e3a82d4f 185 Gene3D G3DSA:3.40.30.10 15 177 5.3E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28540 5cfdaa32342a2d396c8151c8e3a82d4f 185 SUPERFAMILY SSF52833 11 178 1.49E-20 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28540 5cfdaa32342a2d396c8151c8e3a82d4f 185 Pfam PF13462 Thioredoxin 16 178 1.4E-13 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11110 c8a5a5c62c91d0ba1e76d52ddc450b0d 233 SUPERFAMILY SSF141488 44 112 6.41E-13 T 06-07-2017 IPR018660 C-type lysozyme, inhibitor APT55_RS11110 c8a5a5c62c91d0ba1e76d52ddc450b0d 233 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 124 223 8.0E-28 T 06-07-2017 APT55_RS11110 c8a5a5c62c91d0ba1e76d52ddc450b0d 233 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 49 107 4.2E-11 T 06-07-2017 IPR018660 C-type lysozyme, inhibitor APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SUPERFAMILY SSF47384 259 336 1.96E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Gene3D G3DSA:3.40.50.2300 4 139 4.0E-40 T 06-07-2017 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SMART SM00091 154 221 5.6E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Pfam PF13426 PAS domain 166 263 3.1E-8 T 06-07-2017 IPR000014 PAS domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SUPERFAMILY SSF55874 324 489 1.83E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Gene3D G3DSA:3.30.450.20 143 261 3.2E-15 T 06-07-2017 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 490 4.6E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Pfam PF00512 His Kinase A (phospho-acceptor) domain 269 335 1.1E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Pfam PF00072 Response regulator receiver domain 11 122 2.8E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SMART SM00387 379 491 1.2E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Gene3D G3DSA:3.30.565.10 323 490 1.3E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 444 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 430 1.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SMART SM00388 267 335 1.0E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SUPERFAMILY SSF52172 8 160 1.71E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 Gene3D G3DSA:1.10.287.130 262 322 3.6E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SUPERFAMILY SSF55785 142 262 2.27E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 SMART SM00448 9 122 2.6E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22195 57448deb52b1e66c92f771b41a464fdd 494 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 270 6.2E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Gene3D G3DSA:2.160.10.10 99 152 1.5E-16 T 06-07-2017 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Gene3D G3DSA:2.160.10.10 153 214 1.6E-14 T 06-07-2017 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 2 330 33.596 T 06-07-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 111 139 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Gene3D G3DSA:2.160.10.10 215 311 1.8E-15 T 06-07-2017 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 SUPERFAMILY SSF51161 36 319 7.86E-70 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 93 2.3E-15 T 06-07-2017 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 228 262 0.0011 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 1.5E-9 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05325 6e47e11ce1c3822e0eb947950dd56a41 347 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 20 332 1.2E-93 T 06-07-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APT55_RS16840 955b5d441d683ed3ff2c2f07080f5520 294 SUPERFAMILY SSF161098 18 287 3.53E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16840 955b5d441d683ed3ff2c2f07080f5520 294 Gene3D G3DSA:1.10.3720.10 20 283 7.3E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16840 955b5d441d683ed3ff2c2f07080f5520 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 282 5.4E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 260 314 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 SUPERFAMILY SSF81442 28 534 5.49E-173 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 391 410 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 363 381 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 74 97 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 144 156 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 226 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 304 319 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 441 462 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 196 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 27 52 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 328 349 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 258 279 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 1.1E-90 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 Gene3D G3DSA:1.20.210.10 26 536 2.4E-183 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS10425 937ddbb90a0637d9e5d28167ba3f9309 571 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 37 483 5.2E-147 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 Pfam PF11967 Recombination protein O N terminal 1 80 8.7E-20 T 06-07-2017 IPR022572 DNA replication/recombination mediator RecO, N-terminal APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 163 8.7E-28 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 SUPERFAMILY SSF57863 83 183 1.02E-14 T 06-07-2017 APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 Gene3D G3DSA:2.40.50.140 2 84 9.5E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 SUPERFAMILY SSF50249 1 80 4.45E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 Hamap MF_00201 DNA repair protein RecO [recO]. 3 292 24.578 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT55_RS12300 0055b4763311dfcb200491b673d53e72 301 Pfam PF02565 Recombination protein O C terminal 86 171 1.4E-15 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT55_RS11235 73bda8de81f6f8058c040ef577ce3f6c 247 SUPERFAMILY SSF52980 31 158 8.04E-7 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS11235 73bda8de81f6f8058c040ef577ce3f6c 247 Pfam PF05685 Putative restriction endonuclease 31 170 6.3E-20 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS14840 e3532159b22af9d8cf7bb152031c716e 307 SUPERFAMILY SSF48576 24 299 4.48E-85 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS14840 e3532159b22af9d8cf7bb152031c716e 307 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 226 238 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS14840 e3532159b22af9d8cf7bb152031c716e 307 Pfam PF00348 Polyprenyl synthetase 43 281 1.2E-55 T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS14840 e3532159b22af9d8cf7bb152031c716e 307 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 93 109 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 APT55_RS14840 e3532159b22af9d8cf7bb152031c716e 307 Gene3D G3DSA:1.10.600.10 14 306 8.2E-97 T 06-07-2017 IPR008949 Isoprenoid synthase domain APT55_RS29060 4afd192e2066fd72c5237fc09e6260de 369 Pfam PF13531 Bacterial extracellular solute-binding protein 63 315 3.3E-42 T 06-07-2017 APT55_RS29060 4afd192e2066fd72c5237fc09e6260de 369 Gene3D G3DSA:3.40.190.10 167 313 1.5E-56 T 06-07-2017 APT55_RS29060 4afd192e2066fd72c5237fc09e6260de 369 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 56 363 1.5E-82 T 06-07-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT55_RS29060 4afd192e2066fd72c5237fc09e6260de 369 Gene3D G3DSA:3.40.190.10 71 166 7.9E-12 T 06-07-2017 APT55_RS29060 4afd192e2066fd72c5237fc09e6260de 369 SUPERFAMILY SSF53850 57 363 6.09E-72 T 06-07-2017 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 Pfam PF01026 TatD related DNase 4 258 2.9E-76 T 06-07-2017 IPR001130 TatD family GO:0016788 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 258 2.3E-85 T 06-07-2017 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 Hamap MF_02048 D-aminoacyl-tRNA deacylase [dtd3]. 2 260 56.552 T 06-07-2017 IPR033665 D-aminoacyl-tRNA deacylase DTD3 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 Gene3D G3DSA:3.20.20.140 1 259 2.3E-85 T 06-07-2017 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 193 209 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 SUPERFAMILY SSF51556 1 259 2.87E-84 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS00170 aa4944be3772c1cd2734df94d5a1228f 268 PIRSF PIRSF005902 1 262 2.7E-77 T 06-07-2017 IPR001130 TatD family GO:0016788 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 PIRSF PIRSF000036 1 84 7.9E-45 T 06-07-2017 IPR006217 Photosystem II cytochrome b559, alpha subunit GO:0009523|GO:0009767|GO:0015979|GO:0019684|GO:0020037 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 TIGRFAM TIGR01332 cyt_b559_alpha: cytochrome b559, alpha subunit 2 81 1.0E-44 T 06-07-2017 IPR006217 Photosystem II cytochrome b559, alpha subunit GO:0009523|GO:0009767|GO:0015979|GO:0019684|GO:0020037 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 Pfam PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits 6 34 2.0E-15 T 06-07-2017 IPR013081 Photosystem II cytochrome b559, N-terminal GO:0015979 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 Hamap MF_00642 Cytochrome b559 subunit alpha [psbE]. 1 82 29.831 T 06-07-2017 IPR006217 Photosystem II cytochrome b559, alpha subunit GO:0009523|GO:0009767|GO:0015979|GO:0019684|GO:0020037 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 ProSitePatterns PS00537 Cytochrome b559 subunits heme-binding site signature. 14 28 - T 06-07-2017 IPR006216 Photosystem II cytochrome b559, conserved site GO:0009523|GO:0009539|GO:0009767|GO:0015979|GO:0016021|GO:0019684|GO:0020037 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 Gene3D G3DSA:1.20.5.860 3 82 1.5E-41 T 06-07-2017 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 SUPERFAMILY SSF161045 3 82 1.22E-36 T 06-07-2017 APT55_RS06760 35110789f8d91d3eefa3d726d39fd8dc 86 Pfam PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit 42 80 3.1E-19 T 06-07-2017 IPR013082 Photosystem II cytochrome b559, alpha subunit, lumenal region GO:0009523|GO:0015979|GO:0016021|GO:0046872 APT55_RS22120 388a8478ff25578ff1968a30adc6f6d5 308 SUPERFAMILY SSF51735 1 285 8.78E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22120 388a8478ff25578ff1968a30adc6f6d5 308 Gene3D G3DSA:3.40.50.720 1 283 3.4E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22120 388a8478ff25578ff1968a30adc6f6d5 308 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 206 5.7E-19 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS20780 0cd3d9a71d09ad6ef14977f07e6602cd 347 Pfam PF04577 Protein of unknown function (DUF563) 132 323 6.7E-22 T 06-07-2017 IPR007657 Glycosyltransferase AER61, uncharacterised GO:0016757 APT55_RS18315 dd9f1c0a4159ffa837a2a1d6464dfb11 436 Pfam PF01554 MatE 20 179 9.4E-19 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT55_RS18315 dd9f1c0a4159ffa837a2a1d6464dfb11 436 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 398 2.1E-63 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT55_RS22730 edce98b3f3814fc5660c1ad07c18474e 359 Pfam PF11805 Protein of unknown function (DUF3326) 10 337 5.7E-164 T 06-07-2017 IPR021763 Protein of unknown function DUF3326 APT55_RS04410 dd8aefe82f915e368d192a8f05582bc4 120 SUPERFAMILY SSF52091 1 106 8.44E-23 T 06-07-2017 IPR002645 STAS domain APT55_RS04410 dd8aefe82f915e368d192a8f05582bc4 120 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 7 104 2.6E-16 T 06-07-2017 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT55_RS04410 dd8aefe82f915e368d192a8f05582bc4 120 Pfam PF13466 STAS domain 17 93 4.9E-11 T 06-07-2017 IPR002645 STAS domain APT55_RS04410 dd8aefe82f915e368d192a8f05582bc4 120 Gene3D G3DSA:3.30.750.24 2 110 1.4E-24 T 06-07-2017 IPR002645 STAS domain APT55_RS17965 1a8e94da5a0a27ed72f8c27718f2f2fc 300 SMART SM00304 242 294 3.5E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS17965 1a8e94da5a0a27ed72f8c27718f2f2fc 300 SUPERFAMILY SSF158472 242 290 8.37E-11 T 06-07-2017 APT55_RS17965 1a8e94da5a0a27ed72f8c27718f2f2fc 300 Pfam PF00672 HAMP domain 223 290 2.2E-15 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS17965 1a8e94da5a0a27ed72f8c27718f2f2fc 300 Pfam PF11845 Protein of unknown function (DUF3365) 19 206 1.3E-41 T 06-07-2017 IPR021796 Protein of unknown function DUF3365 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 PIRSF PIRSF006769 3 362 3.2E-127 T 06-07-2017 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 Gene3D G3DSA:3.40.140.10 8 133 6.3E-34 T 06-07-2017 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 Pfam PF01872 RibD C-terminal domain 152 355 2.3E-46 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 12 356 2.1E-126 T 06-07-2017 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 Gene3D G3DSA:3.40.430.10 134 361 1.3E-76 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 105 1.2E-21 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 359 1.2E-64 T 06-07-2017 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 SUPERFAMILY SSF53927 8 147 2.17E-47 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 APT55_RS26445 8970605e6a6056fe3328b226f2e0b23f 362 SUPERFAMILY SSF53597 151 360 6.98E-55 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 ProSitePatterns PS00464 Ribosomal protein L22 signature. 89 113 - T 06-07-2017 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 Gene3D G3DSA:3.90.470.10 8 114 5.0E-45 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 11 113 1.0E-40 T 06-07-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 7 116 29.932 T 06-07-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 Pfam PF00237 Ribosomal protein L22p/L17e 14 112 2.0E-32 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 APT55_RS24730 08beef21cccb22dfaa6ebf9ab519fbe2 119 SUPERFAMILY SSF54843 7 114 3.79E-45 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 APT55_RS30295 d48dc0d73118903113c45f6ff2e5469f 230 Pfam PF12120 Rifampin ADP-ribosyl transferase 105 202 3.4E-47 T 06-07-2017 IPR021975 DNA/RNA tunnel of bacterial DNA dependent RNA polymerase APT55_RS30295 d48dc0d73118903113c45f6ff2e5469f 230 Pfam PF12120 Rifampin ADP-ribosyl transferase 11 102 1.3E-28 T 06-07-2017 IPR021975 DNA/RNA tunnel of bacterial DNA dependent RNA polymerase APT55_RS25350 10e6db251e14d6fbbaf9809410bcd4b6 71 TIGRFAM TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain 1 48 2.4E-11 T 06-07-2017 IPR022516 Nif11-like leader peptide APT55_RS25350 10e6db251e14d6fbbaf9809410bcd4b6 71 Pfam PF07862 Nitrogen fixation protein of unknown function 1 48 4.2E-11 T 06-07-2017 IPR012903 Uncharacterised protein family, nitrogen fixation APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Gene3D G3DSA:3.30.870.10 358 532 6.1E-75 T 06-07-2017 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Gene3D G3DSA:3.30.870.10 533 714 1.7E-79 T 06-07-2017 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 711 5.0E-258 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 PIRSF PIRSF015589 1 716 1.5E-292 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Hamap MF_00347 Polyphosphate kinase [ppk]. 16 714 33.579 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 SUPERFAMILY SSF56024 533 714 4.93E-76 T 06-07-2017 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 SUPERFAMILY SSF56024 360 528 1.1E-53 T 06-07-2017 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Pfam PF13089 Polyphosphate kinase N-terminal domain 19 124 9.1E-39 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 SUPERFAMILY SSF140356 15 120 5.1E-37 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 SUPERFAMILY SSF143724 122 329 1.33E-59 T 06-07-2017 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Gene3D G3DSA:3.30.1840.10 122 318 3.5E-67 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Pfam PF13090 Polyphosphate kinase C-terminal domain 363 711 1.7E-161 T 06-07-2017 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 APT55_RS07100 b50b2eb9316e33b7759a62ef9eaa8e76 716 Pfam PF02503 Polyphosphate kinase middle domain 134 338 1.5E-63 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 APT55_RS19350 faa322e7d3a3493e959eacc254bb0c68 164 SUPERFAMILY SSF143744 31 160 1.7E-32 T 06-07-2017 APT55_RS19350 faa322e7d3a3493e959eacc254bb0c68 164 Pfam PF03928 Haem-degrading 35 157 1.6E-26 T 06-07-2017 IPR005624 Haem-degrading APT55_RS01575 a54c21b148fa10758de8bd9f82ba98ef 135 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 130 3.5E-22 T 06-07-2017 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like APT55_RS01575 a54c21b148fa10758de8bd9f82ba98ef 135 SUPERFAMILY SSF110857 2 132 1.06E-23 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like APT55_RS01575 a54c21b148fa10758de8bd9f82ba98ef 135 Gene3D G3DSA:3.10.490.10 2 131 1.4E-22 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like APT55_RS17925 f4ccff69f7c18b441181f435070e1bb1 344 Gene3D G3DSA:3.40.190.10 132 248 6.1E-19 T 06-07-2017 APT55_RS17925 f4ccff69f7c18b441181f435070e1bb1 344 SUPERFAMILY SSF53850 42 263 3.21E-36 T 06-07-2017 APT55_RS17925 f4ccff69f7c18b441181f435070e1bb1 344 Pfam PF09084 NMT1/THI5 like 55 263 2.8E-20 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS17925 f4ccff69f7c18b441181f435070e1bb1 344 SMART SM00062 45 253 0.0012 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS23890 3d2e1fb9183b75a4cbec00da940d57b0 180 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23890 3d2e1fb9183b75a4cbec00da940d57b0 180 Pfam PF13633 Prokaryotic N-terminal methylation site 10 35 8.5E-6 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23890 3d2e1fb9183b75a4cbec00da940d57b0 180 SUPERFAMILY SSF54523 12 155 1.88E-15 T 06-07-2017 APT55_RS23890 3d2e1fb9183b75a4cbec00da940d57b0 180 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 4.6E-6 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 SMART SM00382 35 176 7.4E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 Gene3D G3DSA:3.40.50.300 20 184 8.5E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 PIRSF PIRSF002849 1 316 3.1E-124 T 06-07-2017 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 SUPERFAMILY SSF52540 5 287 5.91E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 168 1.4E-60 T 06-07-2017 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 APT55_RS12620 ff098de6c06f155bc9319048a1e349e5 316 Gene3D G3DSA:1.10.8.300 204 312 3.2E-36 T 06-07-2017 APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 Gene3D G3DSA:1.20.120.530 81 216 1.1E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 SMART SM00345 19 77 2.1E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 SMART SM00895 87 209 1.9E-16 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 SUPERFAMILY SSF48008 83 214 1.57E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 77 1.2E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 Gene3D G3DSA:1.10.10.10 10 78 1.4E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 SUPERFAMILY SSF46785 11 81 4.72E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14325 2586b70137f65366a08ebf134c9880da 238 Pfam PF07729 FCD domain 87 208 2.6E-20 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS09325 0651698186c28081ad8f2afb9a10e7d1 182 Hamap MF_00040 Ribosome-recycling factor [frr]. 1 182 26.799 T 06-07-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APT55_RS09325 0651698186c28081ad8f2afb9a10e7d1 182 SUPERFAMILY SSF55194 3 179 1.7E-69 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 APT55_RS09325 0651698186c28081ad8f2afb9a10e7d1 182 Pfam PF01765 Ribosome recycling factor 18 179 4.5E-63 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 APT55_RS09325 0651698186c28081ad8f2afb9a10e7d1 182 TIGRFAM TIGR00496 frr: ribosome recycling factor 7 182 2.1E-75 T 06-07-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APT55_RS09325 0651698186c28081ad8f2afb9a10e7d1 182 Gene3D G3DSA:1.10.132.20 64 182 6.5E-43 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 SMART SM00382 43 231 2.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 Gene3D G3DSA:3.40.50.300 16 242 1.3E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 Pfam PF00005 ABC transporter 34 182 3.0E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 Pfam PF00005 ABC transporter 289 433 1.7E-14 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 Gene3D G3DSA:3.40.50.300 269 501 2.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 SUPERFAMILY SSF52540 17 239 8.88E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26905 66e512a51adb92e8843c1066a7f15854 515 SUPERFAMILY SSF52540 270 502 1.25E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 Gene3D G3DSA:3.40.50.1980 290 400 1.6E-34 T 06-07-2017 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 3 425 4.9E-191 T 06-07-2017 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0006461|GO:0009399 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 Gene3D G3DSA:3.40.50.1980 19 161 1.3E-44 T 06-07-2017 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 Gene3D G3DSA:3.40.50.1980 162 261 1.8E-31 T 06-07-2017 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 424 1.0E-114 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 APT55_RS11665 500cc97d39ca4624aa40426c21119bd6 435 SUPERFAMILY SSF53807 6 427 1.37E-134 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Hamap MF_00493 Transaldolase [tal]. 1 377 126.435 T 06-07-2017 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 ProSitePatterns PS01054 Transaldolase signature 1. 40 48 - T 06-07-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Gene3D G3DSA:3.40.50.10490 450 578 3.6E-34 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Pfam PF00923 Transaldolase 14 366 1.2E-80 T 06-07-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Gene3D G3DSA:3.40.50.10490 579 674 3.0E-26 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Gene3D G3DSA:3.40.50.10490 854 937 1.7E-12 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 PRINTS PR00662 Glucose-6-phosphate isomerase signature 570 588 4.1E-9 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 PRINTS PR00662 Glucose-6-phosphate isomerase signature 458 477 4.1E-9 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 PRINTS PR00662 Glucose-6-phosphate isomerase signature 645 666 4.1E-9 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 TIGRFAM TIGR00876 tal_mycobact: transaldolase 12 365 1.4E-92 T 06-07-2017 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Gene3D G3DSA:3.40.50.10490 718 774 6.0E-12 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 SUPERFAMILY SSF53697 306 786 7.17E-83 T 06-07-2017 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 ProSitePatterns PS00958 Transaldolase active site. 137 154 - T 06-07-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Gene3D G3DSA:3.20.20.70 2 367 1.2E-108 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 Pfam PF00342 Phosphoglucose isomerase 453 666 2.9E-18 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS28225 0fcf9a8f738a16dd6b029b35121a9abb 950 SUPERFAMILY SSF51569 4 370 8.55E-73 T 06-07-2017 APT55_RS08630 28ae404ea552ba97f917adf9cb6af006 393 Pfam PF13847 Methyltransferase domain 53 183 1.7E-24 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS08630 28ae404ea552ba97f917adf9cb6af006 393 Gene3D G3DSA:3.40.50.150 33 180 2.3E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08630 28ae404ea552ba97f917adf9cb6af006 393 Gene3D G3DSA:3.40.50.150 231 290 2.3E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS08630 28ae404ea552ba97f917adf9cb6af006 393 SUPERFAMILY SSF53335 27 255 5.83E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12640 7e008387892af02559f6743f86301fab 364 SUPERFAMILY SSF52540 16 265 1.65E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12640 7e008387892af02559f6743f86301fab 364 Gene3D G3DSA:3.40.50.300 16 208 1.4E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04015 a7ff7b952e8109b4e098c638df0afb45 175 Pfam PF06305 Protein of unknown function (DUF1049) 27 81 2.9E-5 T 06-07-2017 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 APT55_RS11285 3868f1ba196c47c3c52bd97e43b9c959 131 SUPERFAMILY SSF55729 5 126 3.82E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11285 3868f1ba196c47c3c52bd97e43b9c959 131 Gene3D G3DSA:3.40.630.30 4 127 8.8E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11285 3868f1ba196c47c3c52bd97e43b9c959 131 Pfam PF00583 Acetyltransferase (GNAT) family 58 119 4.6E-16 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS28160 16ef2b44e811846288319776bbfabd89 162 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 39 161 2.5E-50 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28160 16ef2b44e811846288319776bbfabd89 162 Gene3D G3DSA:2.170.150.20 35 160 2.5E-55 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS28160 16ef2b44e811846288319776bbfabd89 162 SUPERFAMILY SSF51316 38 160 9.42E-54 T 06-07-2017 IPR011057 Mss4-like APT55_RS28160 16ef2b44e811846288319776bbfabd89 162 Pfam PF01641 SelR domain 43 160 2.4E-49 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS08210 2cd2ca7fc3fd002f74304aec29da1f5b 168 SUPERFAMILY SSF141571 37 143 1.19E-27 T 06-07-2017 APT55_RS08210 2cd2ca7fc3fd002f74304aec29da1f5b 168 Pfam PF00805 Pentapeptide repeats (8 copies) 103 138 6.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS08210 2cd2ca7fc3fd002f74304aec29da1f5b 168 Pfam PF00805 Pentapeptide repeats (8 copies) 61 95 1.7E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22310 5ef9ecc7b5dd0090cf9f41fb1cb11ed8 161 SUPERFAMILY SSF46458 1 161 1.13E-54 T 06-07-2017 IPR009050 Globin-like APT55_RS22310 5ef9ecc7b5dd0090cf9f41fb1cb11ed8 161 PIRSF PIRSF000081 1 161 1.7E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22310 5ef9ecc7b5dd0090cf9f41fb1cb11ed8 161 Gene3D G3DSA:1.10.490.20 1 161 5.6E-61 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22310 5ef9ecc7b5dd0090cf9f41fb1cb11ed8 161 Pfam PF00502 Phycobilisome protein 8 160 1.3E-59 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22310 5ef9ecc7b5dd0090cf9f41fb1cb11ed8 161 TIGRFAM TIGR01337 apcB: allophycocyanin, beta subunit 2 161 6.9E-75 T 06-07-2017 IPR006245 Allophycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Pfam PF05193 Peptidase M16 inactive domain 261 439 4.1E-33 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Gene3D G3DSA:3.30.830.10 343 501 1.5E-31 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Pfam PF00675 Insulinase (Peptidase family M16) 61 129 4.5E-8 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Pfam PF00675 Insulinase (Peptidase family M16) 156 224 3.8E-5 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Gene3D G3DSA:3.30.830.10 47 106 7.0E-50 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 Gene3D G3DSA:3.30.830.10 157 307 7.0E-50 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 SUPERFAMILY SSF63411 324 506 4.15E-33 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 79 102 - T 06-07-2017 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 SUPERFAMILY SSF63411 157 311 4.43E-48 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS26310 b6fa7a25ef7406e6158be8a909e1ab59 508 SUPERFAMILY SSF63411 31 107 4.43E-48 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 Pfam PF12697 Alpha/beta hydrolase family 53 287 2.7E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00412 Epoxide hydrolase signature 135 148 1.4E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00412 Epoxide hydrolase signature 270 292 1.4E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00412 Epoxide hydrolase signature 57 75 1.4E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 SUPERFAMILY SSF53474 21 294 1.18E-56 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 8.2E-15 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 76 91 8.2E-15 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 135 148 8.2E-15 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 239 253 8.2E-15 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS14415 ea0a229334d7521d4c0d744f1bfe70a5 294 Gene3D G3DSA:3.40.50.1820 34 293 1.2E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS07235 da89d8e2b23c7200fa8bb101df07356d 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 254 1.5E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07235 da89d8e2b23c7200fa8bb101df07356d 262 SUPERFAMILY SSF161098 7 261 2.49E-69 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07235 da89d8e2b23c7200fa8bb101df07356d 262 Gene3D G3DSA:1.10.3720.10 5 249 1.7E-64 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 SUPERFAMILY SSF52540 256 490 8.1E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 Pfam PF06745 KaiC 21 248 4.4E-79 T 06-07-2017 IPR014774 KaiC-like domain APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 Pfam PF06745 KaiC 263 480 3.7E-41 T 06-07-2017 IPR014774 KaiC-like domain APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 SUPERFAMILY SSF52540 16 248 1.09E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 Hamap MF_01836 Circadian clock protein kinase KaiC [kaiC]. 5 515 77.007 T 06-07-2017 IPR013503 Circadian clock KaiC, bacteria GO:0000287|GO:0003677|GO:0004674|GO:0005524|GO:0006355|GO:0042752 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 Gene3D G3DSA:3.40.50.300 251 495 4.0E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 Gene3D G3DSA:3.40.50.300 16 248 3.9E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 PIRSF PIRSF039117 10 510 1.6E-163 T 06-07-2017 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 APT55_RS07435 fc0ef3de47d780026a638fb7d629abaa 517 TIGRFAM TIGR02655 circ_KaiC: circadian clock protein KaiC 20 502 0.0 T 06-07-2017 IPR013503 Circadian clock KaiC, bacteria GO:0000287|GO:0003677|GO:0004674|GO:0005524|GO:0006355|GO:0042752 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 1.0E-13 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 7.4E-41 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 06-07-2017 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.3E-38 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.3E-38 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.3E-38 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 Gene3D G3DSA:2.40.50.100 20 84 2.4E-32 T 06-07-2017 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 Pfam PF01016 Ribosomal L27 protein 2 81 2.0E-37 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 SUPERFAMILY SSF110324 2 83 5.93E-34 T 06-07-2017 APT55_RS18140 d7224b883cc8a405a93dc9c7919a34c2 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.961 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS16620 a889ac7b512ff60d0c9186eef2762773 135 Gene3D G3DSA:2.60.120.10 26 134 9.3E-44 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS16620 a889ac7b512ff60d0c9186eef2762773 135 Pfam PF01050 Mannose-6-phosphate isomerase 23 129 3.1E-51 T 06-07-2017 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 APT55_RS16620 a889ac7b512ff60d0c9186eef2762773 135 SUPERFAMILY SSF51182 22 135 2.28E-39 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 SUPERFAMILY SSF46894 126 223 5.67E-25 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 SMART SM00862 148 223 9.8E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 Gene3D G3DSA:3.40.50.2300 1 120 2.3E-39 T 06-07-2017 APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 Gene3D G3DSA:1.10.10.10 125 223 2.2E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 SUPERFAMILY SSF52172 1 118 1.39E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 SMART SM00448 1 112 1.6E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 1.7E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS16140 f0d433d2d45bf3c0b80ec1b6bc34b373 226 Pfam PF00072 Response regulator receiver domain 3 113 1.8E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22990 9f7d72f7a38490c6a973fbf4da92995b 410 Pfam PF13489 Methyltransferase domain 93 238 1.0E-13 T 06-07-2017 APT55_RS22990 9f7d72f7a38490c6a973fbf4da92995b 410 Pfam PF08421 Putative zinc binding domain 6 67 6.9E-25 T 06-07-2017 IPR013630 Methyltransferase putative zinc binding domain APT55_RS22990 9f7d72f7a38490c6a973fbf4da92995b 410 Gene3D G3DSA:3.40.50.150 91 272 5.5E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22990 9f7d72f7a38490c6a973fbf4da92995b 410 Pfam PF08484 C-methyltransferase C-terminal domain 245 404 1.3E-71 T 06-07-2017 IPR013691 C-methyltransferase APT55_RS22990 9f7d72f7a38490c6a973fbf4da92995b 410 SUPERFAMILY SSF53335 81 256 1.35E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24400 1337e01ca7108dc33849fcc954175dd2 257 Pfam PF01501 Glycosyl transferase family 8 64 145 1.1E-8 T 06-07-2017 IPR002495 Glycosyl transferase, family 8 GO:0016757 APT55_RS24400 1337e01ca7108dc33849fcc954175dd2 257 SUPERFAMILY SSF53448 3 222 1.21E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24400 1337e01ca7108dc33849fcc954175dd2 257 Gene3D G3DSA:3.90.550.10 5 216 4.2E-17 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS04875 03bc400df5efa2713efa4b89f0bc09de 421 Pfam PF01565 FAD binding domain 41 175 1.8E-24 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS04875 03bc400df5efa2713efa4b89f0bc09de 421 SUPERFAMILY SSF56176 36 213 1.31E-41 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS04875 03bc400df5efa2713efa4b89f0bc09de 421 Gene3D G3DSA:3.30.43.10 39 76 8.4E-4 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS04875 03bc400df5efa2713efa4b89f0bc09de 421 SUPERFAMILY SSF55103 221 418 3.27E-20 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT55_RS04875 03bc400df5efa2713efa4b89f0bc09de 421 Gene3D G3DSA:3.30.465.10 94 213 2.7E-26 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS09650 fffdc8d7c92e183097cb79a915ff7b96 526 SUPERFAMILY SSF56059 177 241 1.69E-7 T 06-07-2017 APT55_RS09650 fffdc8d7c92e183097cb79a915ff7b96 526 SUPERFAMILY SSF56059 285 399 1.69E-7 T 06-07-2017 APT55_RS19235 4fb0befa8a8f3e830d0d0861fa4823b5 401 Pfam PF01837 Homocysteine biosynthesis enzyme, sulfur-incorporation 16 380 1.6E-139 T 06-07-2017 IPR002708 Homocysteine biosynthesis enzyme, sulfur-incorporation APT55_RS19235 4fb0befa8a8f3e830d0d0861fa4823b5 401 ProDom PD011569 METAL-BINDING IRON IRON-SULFUR 4FE-4S FERREDOXIN OXIDOREDUCTASE DOMAIN ELECTRON METHANOGENESIS A 15 339 1.0E-152 T 06-07-2017 IPR002708 Homocysteine biosynthesis enzyme, sulfur-incorporation APT55_RS23485 580fc9ed287a79f797fc667601fc5542 181 Pfam PF10719 Late competence development protein ComFB 63 143 1.4E-21 T 06-07-2017 IPR019657 Late competence development protein ComFB APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 636 743 1.3E-8 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:3.40.120.10 553 626 1.1E-5 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:3.30.310.50 752 831 1.6E-13 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 328 356 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 SUPERFAMILY SSF53448 1 280 5.22E-76 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 SUPERFAMILY SSF51161 244 432 1.12E-30 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:3.40.120.10 382 527 3.4E-17 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 383 514 7.2E-22 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:3.90.550.10 1 235 8.2E-71 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 534 631 1.7E-10 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:2.160.10.10 249 370 8.4E-23 T 06-07-2017 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 267 296 2.0E-7 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Pfam PF00483 Nucleotidyl transferase 3 230 6.9E-54 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 SUPERFAMILY SSF53738 532 632 7.85E-9 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 SUPERFAMILY SSF53738 636 742 4.32E-20 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 Gene3D G3DSA:3.40.120.10 633 728 8.8E-21 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 264 292 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS24465 68278ad9714a7d237da1091daff8ff94 847 SUPERFAMILY SSF55957 744 831 8.63E-11 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 Gene3D G3DSA:3.30.1220.10 254 362 8.9E-34 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 Gene3D G3DSA:3.40.50.300 19 215 9.7E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 SUPERFAMILY SSF52540 20 199 4.44E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 274 362 8.8E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 20 197 2.3E-57 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 SMART SM00833 274 362 2.6E-18 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS12810 c22e8cdfca72604bb8e6f162f88cbde4 375 SUPERFAMILY SSF90002 274 362 8.37E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT55_RS26350 88dd63039fd09aa96dfb351372a01162 87 Gene3D G3DSA:2.10.260.10 4 74 3.9E-18 T 06-07-2017 APT55_RS26350 88dd63039fd09aa96dfb351372a01162 87 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 13 49 4.7E-7 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 APT55_RS26350 88dd63039fd09aa96dfb351372a01162 87 SUPERFAMILY SSF89447 6 58 1.19E-13 T 06-07-2017 APT55_RS26350 88dd63039fd09aa96dfb351372a01162 87 SMART SM00966 10 53 3.3E-8 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Gene3D G3DSA:3.30.70.260 361 428 5.2E-7 T 06-07-2017 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 180 202 - T 06-07-2017 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 9 126 3.6E-21 T 06-07-2017 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 SUPERFAMILY SSF55347 134 301 2.09E-52 T 06-07-2017 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 PIRSF PIRSF000098 1 435 9.7E-161 T 06-07-2017 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Gene3D G3DSA:3.40.50.720 3 145 3.5E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 SUPERFAMILY SSF51735 3 155 2.37E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Pfam PF00742 Homoserine dehydrogenase 134 314 3.1E-67 T 06-07-2017 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 SUPERFAMILY SSF55021 357 429 8.84E-12 T 06-07-2017 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Pfam PF01842 ACT domain 361 421 6.4E-8 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS04835 f2980d09b97280b27a6d0f0566bdd3e4 435 Gene3D G3DSA:3.30.360.10 146 298 5.8E-57 T 06-07-2017 APT55_RS19605 c2230562b6ba90be5acef61c7232feae 145 Gene3D G3DSA:3.90.1590.10 10 108 2.2E-14 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT55_RS19605 c2230562b6ba90be5acef61c7232feae 145 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 38 91 1.1E-4 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT55_RS19605 c2230562b6ba90be5acef61c7232feae 145 SUPERFAMILY SSF51316 14 136 9.31E-21 T 06-07-2017 IPR011057 Mss4-like APT55_RS14375 ffeb3fb4926e92c0651504562b9664d4 143 Pfam PF12120 Rifampin ADP-ribosyl transferase 17 115 2.9E-49 T 06-07-2017 IPR021975 DNA/RNA tunnel of bacterial DNA dependent RNA polymerase APT55_RS06995 256a79898366db1f50fdd947a780420a 283 Pfam PF09622 Putative integral membrane protein (DUF2391) 16 282 6.0E-107 T 06-07-2017 IPR024464 Protein of unknown function DUF2391 APT55_RS06995 256a79898366db1f50fdd947a780420a 283 TIGRFAM TIGR02587 TIGR02587: putative integral membrane protein TIGR02587 11 282 3.9E-93 T 06-07-2017 IPR013416 Conserved hypothetical protein CHP02587, putative integral membrane APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 Pfam PF00005 ABC transporter 353 502 7.0E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 Gene3D G3DSA:1.20.1560.10 9 325 3.4E-74 T 06-07-2017 APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 Gene3D G3DSA:3.40.50.300 336 566 2.6E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 Pfam PF00664 ABC transporter transmembrane region 22 290 1.4E-50 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 SUPERFAMILY SSF52540 326 573 2.02E-97 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 SUPERFAMILY SSF90123 10 325 9.03E-73 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS13270 56c190f3cc3865e0a187066720c47301 574 SMART SM00382 362 548 1.1E-22 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22050 19592e6490c0f70f939e60d6502dff92 271 Pfam PF01383 CpcD/allophycocyanin linker domain 221 270 1.3E-12 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS22050 19592e6490c0f70f939e60d6502dff92 271 Pfam PF00427 Phycobilisome Linker polypeptide 28 152 2.9E-50 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS22050 19592e6490c0f70f939e60d6502dff92 271 PIRSF PIRSF005898 3 268 5.4E-73 T 06-07-2017 IPR016470 Phycobilisome linker protein GO:0015979|GO:0030089 APT55_RS22050 19592e6490c0f70f939e60d6502dff92 271 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 21 202 8.0E-66 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS22050 19592e6490c0f70f939e60d6502dff92 271 SMART SM01094 219 271 5.7E-11 T 06-07-2017 IPR008213 CpcD-like domain GO:0030089 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 Gene3D G3DSA:3.40.50.300 174 354 1.7E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 624 35.537 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 Gene3D G3DSA:1.10.8.60 355 420 4.9E-27 T 06-07-2017 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 SUPERFAMILY SSF140990 427 625 1.18E-59 T 06-07-2017 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 345 7.3E-46 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 SMART SM00382 209 348 1.9E-24 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 SUPERFAMILY SSF52540 173 416 1.12E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 123 620 2.0E-215 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 Pfam PF01434 Peptidase family M41 406 619 3.5E-62 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 APT55_RS19155 aa6c59da691c7f15389d1aa609686350 634 ProSitePatterns PS00674 AAA-protein family signature. 316 334 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 Pfam PF00361 Proton-conducting membrane transporter 140 422 4.7E-50 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 71 126 1.2E-14 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 8.3E-25 T 06-07-2017 APT55_RS05755 a8b9f646df85f3d3d909d721f3cea216 632 TIGRFAM TIGR01960 ndhF3_CO2: NAD(P)H dehydrogenase, subunit NdhF3 family 1 604 9.1E-288 T 06-07-2017 IPR010217 NAD(P)H dehydrogenase, subunit NdhF3 APT55_RS28825 689337a223bc1db6849be292f0aa2efd 273 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 4 260 6.6E-100 T 06-07-2017 IPR005232 Conserved hypothetical protein CHP00268 APT55_RS28825 689337a223bc1db6849be292f0aa2efd 273 Gene3D G3DSA:3.40.50.620 13 169 1.0E-31 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS28825 689337a223bc1db6849be292f0aa2efd 273 SUPERFAMILY SSF52402 15 219 3.09E-36 T 06-07-2017 APT55_RS28825 689337a223bc1db6849be292f0aa2efd 273 PIRSF PIRSF006661 1 271 5.1E-109 T 06-07-2017 IPR005232 Conserved hypothetical protein CHP00268 APT55_RS28825 689337a223bc1db6849be292f0aa2efd 273 Pfam PF02540 NAD synthase 17 78 1.4E-5 T 06-07-2017 IPR022310 NAD/GMP synthase APT55_RS02475 fa9261f8ba2705fbacd7339761c1de9d 281 SUPERFAMILY SSF52266 78 273 7.02E-41 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS02475 fa9261f8ba2705fbacd7339761c1de9d 281 Gene3D G3DSA:3.40.50.1110 80 274 6.8E-45 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS02475 fa9261f8ba2705fbacd7339761c1de9d 281 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 105 265 1.3E-21 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS12465 c846dc6dd803b4e7c00270b7e2cf7b15 409 PIRSF PIRSF032178 3 409 5.3E-133 T 06-07-2017 IPR016991 Protein of unknown function UCP032178 APT55_RS12465 c846dc6dd803b4e7c00270b7e2cf7b15 409 Pfam PF04286 Protein of unknown function (DUF445) 14 404 1.7E-73 T 06-07-2017 IPR007383 Protein of unknown function DUF445 APT55_RS11190 7ed86779d2cfb1c36fd1d173a788fd21 216 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 38 166 1.8E-33 T 06-07-2017 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 APT55_RS11190 7ed86779d2cfb1c36fd1d173a788fd21 216 Gene3D G3DSA:3.40.630.30 29 169 1.3E-27 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11190 7ed86779d2cfb1c36fd1d173a788fd21 216 SUPERFAMILY SSF55729 8 159 2.23E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11190 7ed86779d2cfb1c36fd1d173a788fd21 216 Pfam PF00583 Acetyltransferase (GNAT) family 75 148 4.6E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS10005 34a67984fd76b7a7da24b1faf4b8fd7b 158 Gene3D G3DSA:2.40.50.180 41 78 1.8E-4 T 06-07-2017 APT55_RS10005 34a67984fd76b7a7da24b1faf4b8fd7b 158 SMART SM00260 1 134 3.9E-5 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10005 34a67984fd76b7a7da24b1faf4b8fd7b 158 Pfam PF01584 CheW-like domain 3 136 5.0E-21 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS10005 34a67984fd76b7a7da24b1faf4b8fd7b 158 SUPERFAMILY SSF50341 3 137 5.75E-21 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS24190 b172c8dd8c6e2949c63004d297399627 127 PIRSF PIRSF037673 1 127 7.1E-54 T 06-07-2017 IPR017260 Uncharacterised conserved protein UCP037673 APT55_RS24190 b172c8dd8c6e2949c63004d297399627 127 Pfam PF14251 Domain of unknown function (DUF4346) 10 127 8.0E-55 T 06-07-2017 IPR025595 Domain of unknown function DUF4346 APT55_RS05855 357a511f6f571574d2200a23f2448ec2 167 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 29 164 1.0E-56 T 06-07-2017 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 APT55_RS05855 357a511f6f571574d2200a23f2448ec2 167 Gene3D G3DSA:3.10.129.10 23 166 3.5E-58 T 06-07-2017 IPR029069 HotDog domain APT55_RS05855 357a511f6f571574d2200a23f2448ec2 167 SUPERFAMILY SSF54637 29 165 1.06E-48 T 06-07-2017 IPR029069 HotDog domain APT55_RS05855 357a511f6f571574d2200a23f2448ec2 167 Pfam PF07977 FabA-like domain 36 158 6.2E-34 T 06-07-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 APT55_RS05855 357a511f6f571574d2200a23f2448ec2 167 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 27 167 34.01 T 06-07-2017 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 APT55_RS28450 a95be9e2e579278bd93a63c9e63a7acc 2157 SUPERFAMILY SSF56436 2048 2156 4.9E-28 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS28450 a95be9e2e579278bd93a63c9e63a7acc 2157 SMART SM00034 2044 2157 5.6E-14 T 06-07-2017 IPR001304 C-type lectin APT55_RS28450 a95be9e2e579278bd93a63c9e63a7acc 2157 Pfam PF00059 Lectin C-type domain 2062 2156 2.6E-13 T 06-07-2017 IPR001304 C-type lectin APT55_RS28450 a95be9e2e579278bd93a63c9e63a7acc 2157 Gene3D G3DSA:3.10.100.10 2046 2156 1.3E-28 T 06-07-2017 IPR016186 C-type lectin-like APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 Gene3D G3DSA:3.40.50.880 1 197 9.3E-67 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 Pfam PF00117 Glutamine amidotransferase class-I 3 193 4.3E-51 T 06-07-2017 IPR017926 Glutamine amidotransferase APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 SUPERFAMILY SSF52317 1 195 3.97E-53 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 2.3E-14 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 2.3E-14 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00096 Glutamine amidotransferase superfamily signature 171 184 2.3E-14 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 193 2.0E-73 T 06-07-2017 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 171 184 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 53 62 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 80 91 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 125 137 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 2 16 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00097 Anthranilate synthase component II signature 105 113 7.9E-37 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 7.2E-8 T 06-07-2017 APT55_RS12580 b946b94ab24e250719bfd86197a8df40 198 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 7.2E-8 T 06-07-2017 APT55_RS09875 b5c8782ba37e90840bfe3f0c014f3e94 112 Pfam PF13560 Helix-turn-helix domain 34 89 5.0E-9 T 06-07-2017 APT55_RS09875 b5c8782ba37e90840bfe3f0c014f3e94 112 SUPERFAMILY SSF47413 34 92 3.58E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS09875 b5c8782ba37e90840bfe3f0c014f3e94 112 Gene3D G3DSA:1.10.260.40 34 91 1.5E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS09875 b5c8782ba37e90840bfe3f0c014f3e94 112 SMART SM00530 33 89 1.5E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS27695 56d8edc770e2a597f985f3b3220cc1a8 202 Pfam PF05685 Putative restriction endonuclease 10 196 8.0E-44 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27695 56d8edc770e2a597f985f3b3220cc1a8 202 Gene3D G3DSA:3.90.1570.10 4 199 3.0E-25 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS27695 56d8edc770e2a597f985f3b3220cc1a8 202 SUPERFAMILY SSF52980 3 199 7.51E-24 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00091 25 91 1.4E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00091 146 213 2.9E-4 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Pfam PF00512 His Kinase A (phospho-acceptor) domain 276 344 2.6E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00086 97 138 0.95 T 06-07-2017 IPR001610 PAC motif APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00086 214 256 6.8E-5 T 06-07-2017 IPR001610 PAC motif APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 500 2.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Gene3D G3DSA:3.30.565.10 330 501 5.2E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Pfam PF13426 PAS domain 157 254 2.7E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SUPERFAMILY SSF55785 135 254 1.31E-20 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 145 3.2E-23 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 143 263 8.8E-19 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SUPERFAMILY SSF55785 17 136 1.19E-24 T 06-07-2017 IPR000014 PAS domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00388 276 344 4.1E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Gene3D G3DSA:3.30.450.20 137 254 1.3E-19 T 06-07-2017 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Pfam PF08448 PAS fold 32 140 2.2E-16 T 06-07-2017 IPR013656 PAS fold-4 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Gene3D G3DSA:3.30.450.20 17 136 1.7E-24 T 06-07-2017 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SMART SM00387 390 502 4.6E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 Gene3D G3DSA:1.10.287.130 268 329 5.5E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SUPERFAMILY SSF55874 333 501 1.57E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 SUPERFAMILY SSF47384 262 345 8.63E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 480 5.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 499 5.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 441 5.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29155 50b57f8e32600f8bea00071ace3bdc2a 518 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 455 5.1E-17 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22415 dd62f46dfb9291ac18a45061a006baae 396 SUPERFAMILY SSF53383 13 378 5.53E-89 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS22415 dd62f46dfb9291ac18a45061a006baae 396 Gene3D G3DSA:3.90.1150.10 251 380 3.8E-28 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS22415 dd62f46dfb9291ac18a45061a006baae 396 Pfam PF00155 Aminotransferase class I and II 29 372 8.1E-50 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS22415 dd62f46dfb9291ac18a45061a006baae 396 Gene3D G3DSA:3.40.640.10 41 250 1.6E-58 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS28565 5dd5d8a2ecf26db601a72568c1857aad 263 Pfam PF02517 CAAX protease self-immunity 138 249 1.2E-11 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 Pfam PF00376 MerR family regulatory protein 10 46 4.8E-14 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 Gene3D G3DSA:1.10.1660.10 10 63 1.5E-23 T 06-07-2017 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 4.6E-11 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 4.6E-11 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 4.6E-11 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 Gene3D G3DSA:1.10.1660.10 64 134 1.7E-24 T 06-07-2017 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 SUPERFAMILY SSF46955 10 122 9.52E-33 T 06-07-2017 IPR009061 Putative DNA-binding domain APT55_RS13025 8542a449e8813681ee376acc035c013a 136 SMART SM00422 10 77 4.6E-24 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS13025 8542a449e8813681ee376acc035c013a 136 Pfam PF09278 MerR, DNA binding 52 115 2.2E-20 T 06-07-2017 IPR015358 Transcription regulator MerR, DNA binding APT55_RS12760 eeb0fe94301f07cacb6f4d03e4bfaf3c 316 Gene3D G3DSA:3.90.550.10 18 259 1.5E-36 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12760 eeb0fe94301f07cacb6f4d03e4bfaf3c 316 SUPERFAMILY SSF53448 18 234 1.13E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12760 eeb0fe94301f07cacb6f4d03e4bfaf3c 316 Pfam PF00535 Glycosyl transferase family 2 19 126 1.6E-29 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS14020 4182c3206aeee97beb039eae8ad21f43 162 SUPERFAMILY SSF141571 32 133 1.7E-27 T 06-07-2017 APT55_RS14020 4182c3206aeee97beb039eae8ad21f43 162 Pfam PF00805 Pentapeptide repeats (8 copies) 95 132 1.8E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS14020 4182c3206aeee97beb039eae8ad21f43 162 Pfam PF00805 Pentapeptide repeats (8 copies) 37 72 1.8E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22925 5511902887b81791b68f8002cc541f27 394 Pfam PF13458 Periplasmic binding protein 38 385 1.3E-60 T 06-07-2017 IPR028081 Leucine-binding protein domain APT55_RS22925 5511902887b81791b68f8002cc541f27 394 Gene3D G3DSA:3.40.50.2300 168 313 1.8E-32 T 06-07-2017 APT55_RS22925 5511902887b81791b68f8002cc541f27 394 SUPERFAMILY SSF53822 38 386 8.57E-77 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS22925 5511902887b81791b68f8002cc541f27 394 Gene3D G3DSA:3.40.50.2300 314 369 1.5E-41 T 06-07-2017 APT55_RS22925 5511902887b81791b68f8002cc541f27 394 Gene3D G3DSA:3.40.50.2300 36 160 1.5E-41 T 06-07-2017 APT55_RS14490 3a5e8ad204b3ceb53049f6fc9bc9f5a5 360 SUPERFAMILY SSF51735 1 350 5.08E-93 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14490 3a5e8ad204b3ceb53049f6fc9bc9f5a5 360 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 338 6.2E-149 T 06-07-2017 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 APT55_RS14490 3a5e8ad204b3ceb53049f6fc9bc9f5a5 360 Gene3D G3DSA:3.40.50.720 1 192 6.4E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14490 3a5e8ad204b3ceb53049f6fc9bc9f5a5 360 Gene3D G3DSA:3.90.25.10 193 348 1.3E-56 T 06-07-2017 APT55_RS14490 3a5e8ad204b3ceb53049f6fc9bc9f5a5 360 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 321 3.7E-98 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SUPERFAMILY SSF55781 591 705 1.81E-8 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SUPERFAMILY SSF55781 208 371 5.89E-17 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SUPERFAMILY SSF55874 780 902 1.31E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 819 903 4.0E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SMART SM00065 397 556 0.006 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SMART SM00065 24 183 2.5E-7 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SMART SM00065 222 379 3.7E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SMART SM00387 814 906 3.6E-8 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SUPERFAMILY SSF55781 382 549 3.93E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Gene3D G3DSA:3.30.565.10 819 902 1.3E-9 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Gene3D G3DSA:3.30.450.40 311 371 3.9E-11 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Gene3D G3DSA:3.30.450.40 385 548 1.1E-8 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 SUPERFAMILY SSF55781 11 178 7.32E-19 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Gene3D G3DSA:3.30.450.40 648 705 6.2E-6 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Gene3D G3DSA:3.30.450.40 118 187 1.1E-10 T 06-07-2017 IPR029016 GAF domain-like APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Pfam PF07730 Histidine kinase 709 772 4.5E-15 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Pfam PF01590 GAF domain 116 173 3.1E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Pfam PF01590 GAF domain 480 546 3.3E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS28295 9eb9d9a375b36251dcd2759f25cb3c70 908 Pfam PF01590 GAF domain 312 369 5.3E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 SUPERFAMILY SSF56322 17 451 6.93E-128 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 Pfam PF00425 chorismate binding enzyme 185 442 2.6E-88 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 PRINTS PR00095 Anthranilate synthase component I signature 300 313 1.2E-16 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 PRINTS PR00095 Anthranilate synthase component I signature 380 394 1.2E-16 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 PRINTS PR00095 Anthranilate synthase component I signature 286 299 1.2E-16 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 PRINTS PR00095 Anthranilate synthase component I signature 395 409 1.2E-16 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 Pfam PF04715 Anthranilate synthase component I, N terminal region 69 144 6.5E-12 T 06-07-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 Gene3D G3DSA:3.60.120.10 68 451 2.5E-135 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS05045 caf77d8945b28101a3a6ca5fa14ace50 452 TIGRFAM TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I 94 445 6.5E-127 T 06-07-2017 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I APT55_RS18865 dd0ecd7f590b8eff7ecc34d1dfd7edbf 69 SUPERFAMILY SSF103511 18 66 6.41E-12 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS18865 dd0ecd7f590b8eff7ecc34d1dfd7edbf 69 Gene3D G3DSA:1.10.3460.10 25 63 5.2E-6 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS18865 dd0ecd7f590b8eff7ecc34d1dfd7edbf 69 Pfam PF00504 Chlorophyll A-B binding protein 20 61 3.8E-5 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS07470 503f57db67cd6b844773035ce07dcad7 137 Gene3D G3DSA:2.10.260.10 80 117 4.6E-4 T 06-07-2017 APT55_RS07470 503f57db67cd6b844773035ce07dcad7 137 Pfam PF14250 AbrB-like transcriptional regulator 50 117 6.4E-33 T 06-07-2017 IPR027360 AbrB-like transcriptional regulator APT55_RS07470 503f57db67cd6b844773035ce07dcad7 137 SUPERFAMILY SSF89447 78 121 6.63E-6 T 06-07-2017 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 SUPERFAMILY SSF46955 6 117 1.76E-31 T 06-07-2017 IPR009061 Putative DNA-binding domain APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 Pfam PF13411 MerR HTH family regulatory protein 7 74 2.2E-19 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 SMART SM00422 6 75 9.9E-33 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 18 31 1.4E-9 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 42 62 1.4E-9 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 7 18 1.4E-9 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 Pfam PF07739 TipAS antibiotic-recognition domain 132 218 2.6E-10 T 06-07-2017 IPR012925 TipAS antibiotic-recognition domain APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 Gene3D G3DSA:1.10.1660.10 5 60 2.6E-29 T 06-07-2017 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 ProSitePatterns PS00552 MerR-type HTH domain signature. 9 31 - T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS28520 c3570d0aa662d8000ceaa8f22667410c 246 Gene3D G3DSA:1.10.1660.10 61 129 1.7E-10 T 06-07-2017 APT55_RS00110 ceabc47c8f4d61897792ddee06e330c8 252 SUPERFAMILY SSF58113 101 244 5.62E-7 T 06-07-2017 APT55_RS00110 ceabc47c8f4d61897792ddee06e330c8 252 Gene3D G3DSA:1.20.120.20 139 225 4.8E-5 T 06-07-2017 APT55_RS00110 ceabc47c8f4d61897792ddee06e330c8 252 Gene3D G3DSA:1.20.120.20 11 138 7.4E-5 T 06-07-2017 APT55_RS00110 ceabc47c8f4d61897792ddee06e330c8 252 SUPERFAMILY SSF58113 4 150 1.02E-7 T 06-07-2017 APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.4E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.4E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.4E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 Pfam PF00106 short chain dehydrogenase 4 190 2.0E-62 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.3E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.3E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.3E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 2.3E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 2.3E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 PIRSF PIRSF000126 1 272 3.0E-51 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 SUPERFAMILY SSF51735 4 265 1.64E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13065 03bc9415b044bde3120964f323dbb3c8 273 Gene3D G3DSA:3.40.50.720 4 263 2.9E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 PIRSF PIRSF006276 1 159 1.0E-20 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 SUPERFAMILY SSF52402 1 157 5.86E-40 T 06-07-2017 APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 Gene3D G3DSA:3.40.50.620 1 157 1.5E-44 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 PRINTS PR01438 Universal stress protein signature 117 129 3.6E-18 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 PRINTS PR01438 Universal stress protein signature 135 157 3.6E-18 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 PRINTS PR01438 Universal stress protein signature 2 20 3.6E-18 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS26605 fc32cb27a91c22222f56caa9c4863c24 167 Pfam PF00582 Universal stress protein family 1 156 1.8E-39 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS17750 727d539355fae615bc1948527d2338c4 213 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 203 1.2E-65 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT55_RS17750 727d539355fae615bc1948527d2338c4 213 PIRSF PIRSF000495 2 207 1.2E-72 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT55_RS17750 727d539355fae615bc1948527d2338c4 213 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 204 36.223 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT55_RS17750 727d539355fae615bc1948527d2338c4 213 SUPERFAMILY SSF52317 2 205 4.45E-58 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS17750 727d539355fae615bc1948527d2338c4 213 Pfam PF00117 Glutamine amidotransferase class-I 6 201 1.4E-23 T 06-07-2017 IPR017926 Glutamine amidotransferase APT55_RS17750 727d539355fae615bc1948527d2338c4 213 Gene3D G3DSA:3.40.50.880 1 207 2.9E-80 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 SUPERFAMILY SSF53098 185 380 8.65E-22 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 Pfam PF09299 Mu transposase, C-terminal 396 454 6.8E-18 T 06-07-2017 IPR015378 Transposase-like, Mu, C-terminal APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 SUPERFAMILY SSF46689 47 150 9.5E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 SUPERFAMILY SSF50610 392 451 1.29E-10 T 06-07-2017 IPR009004 Transposase, Mu, C-terminal APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 Gene3D G3DSA:2.30.30.130 399 451 3.9E-7 T 06-07-2017 IPR009004 Transposase, Mu, C-terminal APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 Gene3D G3DSA:3.30.420.10 185 384 1.0E-25 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 Pfam PF13384 Homeodomain-like domain 29 83 1.6E-8 T 06-07-2017 APT55_RS09060 f6556457a19dfbfbb03d32d6e75d8b35 569 Pfam PF00665 Integrase core domain 187 319 7.1E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 Gene3D G3DSA:1.25.40.10 67 105 1.1E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 Gene3D G3DSA:1.25.40.10 288 396 7.4E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 Gene3D G3DSA:1.25.40.10 154 273 1.1E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 SMART SM00028 198 231 23.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 SMART SM00028 319 352 62.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 SMART SM00028 238 271 170.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 SMART SM00028 359 392 20.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 Pfam PF13181 Tetratricopeptide repeat 241 271 0.035 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS12015 0d3133f0a51003b5e9f47f06ca4b7faa 410 SUPERFAMILY SSF48452 177 394 9.17E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18300 6ec03e8f92e23f6e5aba0998fe332a87 245 Pfam PF09991 Predicted membrane protein (DUF2232) 57 189 2.7E-13 T 06-07-2017 IPR018710 Protein of unknown function DUF2232 APT55_RS22950 edff6ec989b0ae1421bc1343bd4c2f24 74 Gene3D G3DSA:1.10.10.10 7 66 8.3E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22950 edff6ec989b0ae1421bc1343bd4c2f24 74 SUPERFAMILY SSF46689 3 66 1.33E-22 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS22950 edff6ec989b0ae1421bc1343bd4c2f24 74 Pfam PF04255 Protein of unknown function (DUF433) 8 63 1.3E-26 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 Gene3D G3DSA:1.50.10.20 1467 1694 2.5E-10 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 Gene3D G3DSA:2.60.40.920 883 983 1.5E-4 T 06-07-2017 IPR003344 Big-1 (bacterial Ig-like domain 1) domain APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1007 1159 8.2E-16 T 06-07-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 SUPERFAMILY SSF48239 1471 1691 4.87E-18 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 Pfam PF00207 Alpha-2-macroglobulin family 1225 1308 2.8E-16 T 06-07-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 SMART SM01360 1223 1313 4.6E-25 T 06-07-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 Pfam PF01835 MG2 domain 645 739 2.6E-14 T 06-07-2017 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 APT55_RS10590 12de78eaf04e75c3b6766b2d75fbc839 1917 SMART SM01359 1007 1159 8.9E-34 T 06-07-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 APT55_RS02065 b4e3f45f29c16fe5fccaf83a4fbe7465 65 Pfam PF01381 Helix-turn-helix 3 59 7.5E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS02065 b4e3f45f29c16fe5fccaf83a4fbe7465 65 SMART SM00530 2 59 1.3E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS02065 b4e3f45f29c16fe5fccaf83a4fbe7465 65 Gene3D G3DSA:1.10.260.40 2 62 2.5E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS02065 b4e3f45f29c16fe5fccaf83a4fbe7465 65 SUPERFAMILY SSF47413 2 63 6.76E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 Gene3D G3DSA:3.40.350.10 4 176 1.2E-51 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 346 358 - T 06-07-2017 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 Pfam PF00557 Metallopeptidase family M24 179 417 5.7E-66 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 SUPERFAMILY SSF55920 173 435 6.15E-83 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 SUPERFAMILY SSF53092 4 172 1.94E-50 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 124 8.7E-39 T 06-07-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 Gene3D G3DSA:3.90.230.10 177 431 2.7E-85 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS12565 121c601d6600f73c439c743e9d815d0b 436 SMART SM01011 1 134 1.2E-59 T 06-07-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 Pfam PF00263 Bacterial type II and III secretion system protein 650 816 3.4E-38 T 06-07-2017 IPR004846 Type II/III secretion system GO:0009306 APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 Pfam PF03958 Bacterial type II/III secretion system short domain 360 465 3.1E-7 T 06-07-2017 IPR005644 NolW-like APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 Pfam PF11741 AMIN domain 33 117 7.0E-8 T 06-07-2017 IPR021731 AMIN domain APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 PRINTS PR00811 Bacterial general secretion pathway protein D signature 643 667 7.0E-13 T 06-07-2017 IPR001775 GspD/PilQ family APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 PRINTS PR00811 Bacterial general secretion pathway protein D signature 780 798 7.0E-13 T 06-07-2017 IPR001775 GspD/PilQ family APT55_RS09800 31724cb9aeac694c11af2be473edfa99 843 PRINTS PR00811 Bacterial general secretion pathway protein D signature 803 817 7.0E-13 T 06-07-2017 IPR001775 GspD/PilQ family APT55_RS26170 522ef658624d716dea594c0435b39a6f 315 Pfam PF00535 Glycosyl transferase family 2 5 125 8.3E-35 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS26170 522ef658624d716dea594c0435b39a6f 315 Gene3D G3DSA:3.90.550.10 2 219 1.3E-56 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS26170 522ef658624d716dea594c0435b39a6f 315 SUPERFAMILY SSF53448 2 229 1.03E-56 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS29110 b27d833b1d5dfcfdfffe540f1b35ce60 320 Pfam PF04960 Glutaminase 31 314 2.6E-122 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 APT55_RS29110 b27d833b1d5dfcfdfffe540f1b35ce60 320 TIGRFAM TIGR03814 Gln_ase: glutaminase A 18 314 7.0E-111 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 APT55_RS29110 b27d833b1d5dfcfdfffe540f1b35ce60 320 SUPERFAMILY SSF56601 10 315 1.69E-116 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS29110 b27d833b1d5dfcfdfffe540f1b35ce60 320 Hamap MF_00313 Glutaminase [glsA]. 14 314 44.019 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 APT55_RS29110 b27d833b1d5dfcfdfffe540f1b35ce60 320 Gene3D G3DSA:3.40.710.10 9 315 9.8E-135 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 SMART SM00861 359 531 1.9E-64 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Gene3D G3DSA:3.40.50.970 337 537 3.7E-74 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 TIGRFAM TIGR00232 tktlase_bact: transketolase 12 667 5.1E-299 T 06-07-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 SUPERFAMILY SSF52518 341 531 6.8E-68 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 10 342 2.3E-157 T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 SUPERFAMILY SSF52922 536 668 7.46E-41 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 ProSitePatterns PS00801 Transketolase signature 1. 17 37 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Gene3D G3DSA:3.40.50.920 542 667 3.5E-46 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Pfam PF02780 Transketolase, C-terminal domain 554 639 2.0E-9 T 06-07-2017 IPR033248 Transketolase, C-terminal domain APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 ProSitePatterns PS00802 Transketolase signature 2. 473 489 - T 06-07-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Pfam PF02779 Transketolase, pyrimidine binding domain 358 530 3.3E-45 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 Gene3D G3DSA:3.40.50.970 9 328 4.6E-122 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS22575 ef24dbb3473c3c71930643a8e54853f3 669 SUPERFAMILY SSF52518 7 328 9.21E-114 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 SUPERFAMILY SSF52743 135 419 2.88E-80 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 PRINTS PR00723 Subtilisin serine protease family (S8) signature 190 203 4.4E-19 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 PRINTS PR00723 Subtilisin serine protease family (S8) signature 152 171 4.4E-19 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 PRINTS PR00723 Subtilisin serine protease family (S8) signature 358 374 4.4E-19 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 Gene3D G3DSA:3.40.50.200 94 419 8.1E-91 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 PIRSF PIRSF037851 1 608 1.2E-280 T 06-07-2017 IPR017295 Peptidase S8A, subtilisin-related, cyanobacteria-1 APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 359 369 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site APT55_RS18120 2b602afd75537de21743ce8352285d7b 610 Pfam PF00082 Subtilase family 152 407 2.1E-44 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS19090 019580ecb1ff1d6a4e84219567f47617 130 Pfam PF13767 Domain of unknown function (DUF4168) 47 121 2.5E-13 T 06-07-2017 IPR025433 Domain of unknown function DUF4168 APT55_RS17260 8dacae77cbc5ec328abcb6496d69a842 186 PIRSF PIRSF014979 24 186 4.5E-33 T 06-07-2017 IPR014468 Uncharacterised conserved protein UCP014979 APT55_RS17260 8dacae77cbc5ec328abcb6496d69a842 186 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 77 121 2.2E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 APT55_RS03555 b970453593838b4bdf14e067128f1395 346 Gene3D G3DSA:3.40.190.10 41 186 2.1E-34 T 06-07-2017 APT55_RS03555 b970453593838b4bdf14e067128f1395 346 SUPERFAMILY SSF53850 41 312 3.53E-70 T 06-07-2017 APT55_RS03555 b970453593838b4bdf14e067128f1395 346 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 40 305 3.4E-83 T 06-07-2017 IPR011862 Phosphate binding protein GO:0006810 APT55_RS03555 b970453593838b4bdf14e067128f1395 346 Pfam PF12849 PBP superfamily domain 36 292 2.6E-32 T 06-07-2017 IPR024370 PBP domain APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 SUPERFAMILY SSF56112 25 330 2.56E-56 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 Gene3D G3DSA:3.30.200.20 31 108 8.0E-17 T 06-07-2017 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 PIRSF PIRSF000647 1 529 9.4E-243 T 06-07-2017 IPR016252 Serine/threonine-protein kinase SpkB KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 40 65 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 Gene3D G3DSA:1.10.510.10 109 295 1.4E-37 T 06-07-2017 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 Pfam PF00805 Pentapeptide repeats (8 copies) 454 493 3.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 SUPERFAMILY SSF141571 416 518 5.89E-29 T 06-07-2017 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 SMART SM00220 34 302 4.8E-39 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS08560 aac67d9d9266c807ef4044a62d637bf4 530 Pfam PF00069 Protein kinase domain 34 293 6.7E-37 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS18350 f688e86b25f2bf5a5c4d5bee038abb4f 88 Gene3D G3DSA:3.30.70.1060 45 86 1.1E-4 T 06-07-2017 APT55_RS18350 f688e86b25f2bf5a5c4d5bee038abb4f 88 SUPERFAMILY SSF54909 1 86 2.95E-14 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS27075 d3911927533b4cc6074b032f013dcd6f 165 Pfam PF10517 Electron transfer DM13 56 164 1.2E-27 T 06-07-2017 IPR019545 DM13 domain APT55_RS12830 3ee9cc0fa7c7a7f211ca5e794b39f5f1 200 Gene3D G3DSA:3.40.50.850 4 195 5.0E-56 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS12830 3ee9cc0fa7c7a7f211ca5e794b39f5f1 200 Pfam PF00857 Isochorismatase family 10 174 8.3E-44 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS12830 3ee9cc0fa7c7a7f211ca5e794b39f5f1 200 SUPERFAMILY SSF52499 4 176 6.93E-54 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS10360 6bdb4d4cbfabe42f957f42b5a4a58b42 143 SUPERFAMILY SSF88723 4 135 1.15E-17 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10360 6bdb4d4cbfabe42f957f42b5a4a58b42 143 Gene3D G3DSA:3.40.50.1010 1 133 3.7E-33 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10360 6bdb4d4cbfabe42f957f42b5a4a58b42 143 Pfam PF01850 PIN domain 4 127 1.0E-11 T 06-07-2017 IPR002716 PIN domain APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Pfam PF00925 GTP cyclohydrolase II 228 395 3.7E-73 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 26 218 5.9E-82 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Gene3D G3DSA:3.90.870.10 17 229 7.4E-95 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 231 418 3.8E-78 T 06-07-2017 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 20 417 53.581 T 06-07-2017 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 19 223 38.979 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 SUPERFAMILY SSF55821 18 223 2.04E-82 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 21 219 3.4E-77 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 SUPERFAMILY SSF142695 225 397 4.84E-69 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS12000 52299afde39591a2fb0eedd58a5379b9 567 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 224 421 41.585 T 06-07-2017 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 130 469 4.8E-125 T 06-07-2017 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 Gene3D G3DSA:3.30.450.90 129 226 1.3E-4 T 06-07-2017 APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 SUPERFAMILY SSF52540 130 462 9.61E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 Gene3D G3DSA:3.40.50.300 229 465 1.3E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 321 335 - T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS24610 a4d781e9d89cbdaa3b0784bf2cbd54bc 498 Pfam PF00437 Type II/IV secretion system protein 135 392 1.1E-42 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 APT55_RS22705 74e0357034d1632e79005e6a26201e70 186 Pfam PF10989 Protein of unknown function (DUF2808) 27 170 9.5E-49 T 06-07-2017 IPR021256 Protein of unknown function DUF2808 APT55_RS01780 64ae7ffe9d91c049e8103b7b4f92c982 159 SUPERFAMILY SSF50475 3 157 1.28E-44 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS01780 64ae7ffe9d91c049e8103b7b4f92c982 159 Pfam PF01613 Flavin reductase like domain 13 144 1.5E-30 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS01780 64ae7ffe9d91c049e8103b7b4f92c982 159 SMART SM00903 11 157 8.4E-42 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS01780 64ae7ffe9d91c049e8103b7b4f92c982 159 Gene3D G3DSA:2.30.110.10 9 155 4.3E-46 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 Gene3D G3DSA:3.40.50.150 146 366 2.7E-38 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 Pfam PF12161 HsdM N-terminal domain 7 109 5.0E-11 T 06-07-2017 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 SUPERFAMILY SSF53335 6 471 1.94E-131 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 254 260 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 Pfam PF02384 N-6 DNA Methylase 121 430 1.2E-78 T 06-07-2017 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 251 263 3.2E-22 T 06-07-2017 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 280 304 3.2E-22 T 06-07-2017 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 168 182 3.2E-22 T 06-07-2017 APT55_RS19915 98e645bf3dafb6b9b007b7534d4ea557 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 144 160 3.2E-22 T 06-07-2017 APT55_RS08135 0c08498e51b87f11093178fbb62cacb0 280 Gene3D G3DSA:3.40.50.880 12 233 1.4E-27 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS08135 0c08498e51b87f11093178fbb62cacb0 280 PIRSF PIRSF032067 1 272 1.2E-73 T 06-07-2017 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 APT55_RS08135 0c08498e51b87f11093178fbb62cacb0 280 Pfam PF03575 Peptidase family S51 10 213 2.0E-25 T 06-07-2017 IPR005320 Peptidase S51 GO:0006508|GO:0008236 APT55_RS08135 0c08498e51b87f11093178fbb62cacb0 280 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 9 257 2.8E-97 T 06-07-2017 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 APT55_RS08135 0c08498e51b87f11093178fbb62cacb0 280 SUPERFAMILY SSF52317 9 224 1.68E-26 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 Gene3D G3DSA:3.40.50.720 6 283 1.2E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 Pfam PF00106 short chain dehydrogenase 6 196 3.8E-53 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.6E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.6E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.6E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 5.6E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.6E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 SUPERFAMILY SSF51735 227 285 7.84E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 SUPERFAMILY SSF51735 2 199 7.84E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.5E-5 T 06-07-2017 APT55_RS20185 501add412d89b0a9b17c5cf2b088733b 302 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 SUPERFAMILY SSF53067 4 248 3.48E-75 T 06-07-2017 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 Gene3D G3DSA:3.30.420.40 3 246 2.1E-71 T 06-07-2017 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 SUPERFAMILY SSF53067 258 485 7.28E-62 T 06-07-2017 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 Gene3D G3DSA:3.30.420.40 258 486 3.5E-56 T 06-07-2017 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 441 2.3E-34 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 TIGRFAM TIGR01312 XylB: xylulokinase 6 482 1.1E-161 T 06-07-2017 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 246 8.9E-71 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT55_RS20320 288104af93e7210b045734f1b04d5cdf 488 PIRSF PIRSF000538 2 488 1.3E-154 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT55_RS09700 4aa9650d849fc6b468ed4fb6dabec218 269 Gene3D G3DSA:3.40.50.300 30 257 2.5E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09700 4aa9650d849fc6b468ed4fb6dabec218 269 Pfam PF00005 ABC transporter 50 199 2.3E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS09700 4aa9650d849fc6b468ed4fb6dabec218 269 SMART SM00382 59 248 3.9E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09700 4aa9650d849fc6b468ed4fb6dabec218 269 SUPERFAMILY SSF52540 32 250 1.63E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09700 4aa9650d849fc6b468ed4fb6dabec218 269 ProSitePatterns PS00211 ABC transporters family signature. 171 185 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 SUPERFAMILY SSF46894 127 221 2.21E-25 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 Pfam PF00072 Response regulator receiver domain 3 112 6.8E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 1.0E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 SUPERFAMILY SSF52172 1 118 1.02E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 Gene3D G3DSA:3.40.50.2300 1 120 8.9E-40 T 06-07-2017 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 SMART SM00448 1 112 9.1E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 SMART SM00862 145 221 1.1E-18 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14265 bf8694bc3ae0f91b1ba197c801ebdc93 225 Gene3D G3DSA:1.10.10.10 126 222 1.2E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 SMART SM00912 35 147 8.9E-22 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 Gene3D G3DSA:2.160.20.10 36 279 1.3E-35 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 Pfam PF05860 haemagglutination activity domain 32 146 2.1E-33 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 65 143 3.7E-27 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 SUPERFAMILY SSF51126 195 295 1.15E-38 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26620 db49df945d2c9134b93e66f94a151647 305 SUPERFAMILY SSF51126 32 165 1.15E-38 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS15245 2a93f4ca3e2d1c9c947e006898faf7ba 366 Pfam PF13439 Glycosyltransferase Family 4 14 172 1.1E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS15245 2a93f4ca3e2d1c9c947e006898faf7ba 366 TIGRFAM TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family 2 361 3.4E-142 T 06-07-2017 IPR023986 Glycosyltransferase, putative, MSMEG0565 family APT55_RS15245 2a93f4ca3e2d1c9c947e006898faf7ba 366 Pfam PF00534 Glycosyl transferases group 1 183 331 5.1E-31 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS15245 2a93f4ca3e2d1c9c947e006898faf7ba 366 SUPERFAMILY SSF53756 3 364 1.61E-64 T 06-07-2017 APT55_RS15245 2a93f4ca3e2d1c9c947e006898faf7ba 366 Gene3D G3DSA:3.40.50.2000 184 331 7.8E-21 T 06-07-2017 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 SUPERFAMILY SSF50156 485 569 6.57E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 PIRSF PIRSF016493 22 589 7.3E-216 T 06-07-2017 IPR024191 Peptidase M61 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 Gene3D G3DSA:2.30.42.10 512 562 3.5E-10 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 SUPERFAMILY SSF55486 193 455 4.98E-26 T 06-07-2017 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 Pfam PF05299 M61 glycyl aminopeptidase 275 391 1.6E-45 T 06-07-2017 IPR007963 Peptidase M61, catalytic domain APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 SMART SM00228 465 551 4.4E-7 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 Gene3D G3DSA:2.30.42.10 466 511 6.6E-5 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS26675 e4991e1c7c0d5f718c7235675e72370d 601 Pfam PF13180 PDZ domain 485 560 3.4E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 Pfam PF00581 Rhodanese-like domain 285 383 3.3E-11 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 Gene3D G3DSA:3.40.50.720 11 254 5.2E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 Pfam PF00899 ThiF family 19 250 6.2E-59 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 Gene3D G3DSA:3.40.250.10 272 386 4.7E-25 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 SMART SM00450 284 387 9.7E-23 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08185 33a28773f013a199d8d575d722d96cad 392 SUPERFAMILY SSF69572 4 360 4.32E-97 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS24375 a7c3ecfdf6e995c34f583829c0caa624 271 Pfam PF00535 Glycosyl transferase family 2 3 162 6.9E-24 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS24375 a7c3ecfdf6e995c34f583829c0caa624 271 Gene3D G3DSA:3.90.550.10 2 228 2.2E-44 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24375 a7c3ecfdf6e995c34f583829c0caa624 271 SUPERFAMILY SSF53448 1 207 3.56E-47 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03430 7485d82c1a5e2baa81c6962403a714c8 191 Pfam PF05685 Putative restriction endonuclease 17 187 4.7E-41 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS03430 7485d82c1a5e2baa81c6962403a714c8 191 SUPERFAMILY SSF52980 8 191 6.97E-57 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS03430 7485d82c1a5e2baa81c6962403a714c8 191 Gene3D G3DSA:3.90.1570.10 6 191 2.1E-74 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS00585 3c8243d5341594a6352d617226c65c48 505 Pfam PF14233 Domain of unknown function (DUF4335) 9 193 1.0E-60 T 06-07-2017 IPR025569 Protein of unknown function DUF4335 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SMART SM00448 304 416 5.5E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SMART SM00387 163 276 3.4E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SUPERFAMILY SSF55874 106 275 3.8E-49 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Gene3D G3DSA:1.10.287.130 43 102 8.1E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 164 274 2.9E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SUPERFAMILY SSF47384 39 117 2.16E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 52 114 9.8E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SUPERFAMILY SSF52172 303 422 8.82E-35 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 235 253 2.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 200 214 2.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 260 273 2.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 218 228 2.0E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 SMART SM00388 51 117 5.7E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Pfam PF00072 Response regulator receiver domain 306 416 1.4E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Gene3D G3DSA:3.40.50.2300 298 424 1.2E-35 T 06-07-2017 APT55_RS30840 1d8e168531362f5316cc319992f481ec 429 Gene3D G3DSA:3.30.565.10 103 278 1.3E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 TIGRFAM TIGR00861 MIP: MIP family channel proteins 9 239 2.1E-56 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 5 24 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 183 205 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 222 242 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 57 81 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 95 114 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 PRINTS PR00783 Major intrinsic protein family signature 153 171 3.0E-54 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 Pfam PF00230 Major intrinsic protein 2 239 4.7E-50 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 ProSitePatterns PS00221 MIP family signature. 75 83 - T 06-07-2017 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 Gene3D G3DSA:1.20.1080.10 2 244 2.0E-64 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT55_RS12415 ce93f3c8a93785f2efaaedc4c8f704ae 259 SUPERFAMILY SSF81338 3 243 1.27E-60 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT55_RS00195 0940d352b361e16a6fdef24be97c19b0 101 SUPERFAMILY SSF54928 2 100 3.9E-30 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS00195 0940d352b361e16a6fdef24be97c19b0 101 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 6.2E-21 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS00195 0940d352b361e16a6fdef24be97c19b0 101 Gene3D G3DSA:3.30.70.330 2 89 1.6E-28 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS00195 0940d352b361e16a6fdef24be97c19b0 101 SMART SM00360 2 75 7.6E-25 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS01110 ffa9e17cad5f4645715752acf4580970 302 SUPERFAMILY SSF88713 5 300 4.45E-93 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS01110 ffa9e17cad5f4645715752acf4580970 302 Pfam PF01522 Polysaccharide deacetylase 75 169 1.3E-9 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS01110 ffa9e17cad5f4645715752acf4580970 302 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 300 4.0E-169 T 06-07-2017 IPR017625 Putative urate catabolism protein APT55_RS01110 ffa9e17cad5f4645715752acf4580970 302 Gene3D G3DSA:3.20.20.370 4 301 1.7E-108 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS11260 7a89cc204e7625152e5304dca966f59b 336 SUPERFAMILY SSF52738 4 185 1.83E-56 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS11260 7a89cc204e7625152e5304dca966f59b 336 PIRSF PIRSF036461 1 333 7.9E-89 T 06-07-2017 IPR011247 Chemotaxis protein-glutamate methylesterase APT55_RS11260 7a89cc204e7625152e5304dca966f59b 336 Pfam PF01339 CheB methylesterase 7 182 3.0E-56 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS11260 7a89cc204e7625152e5304dca966f59b 336 Gene3D G3DSA:3.40.50.180 3 185 2.0E-65 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 8 177 27.258 T 06-07-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 Gene3D G3DSA:3.10.20.80 11 86 6.3E-34 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 176 5.1E-36 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 SUPERFAMILY SSF55200 92 177 5.1E-33 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 177 6.8E-69 T 06-07-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 6.9E-30 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 Gene3D G3DSA:3.30.110.10 87 177 1.6E-37 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 APT55_RS12920 d0a135cc5136f289bfcacd4aaaccdab0 177 SUPERFAMILY SSF54364 13 86 2.22E-28 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT55_RS07670 4ee220a12fa33c587582bdddf10b34b0 129 Pfam PF11317 Protein of unknown function (DUF3119) 14 126 2.1E-41 T 06-07-2017 IPR021467 Protein of unknown function DUF3119 APT55_RS16325 2e8342759c0a3b837cdb33b33b4231c4 322 Pfam PF13646 HEAT repeats 174 239 2.4E-9 T 06-07-2017 APT55_RS16325 2e8342759c0a3b837cdb33b33b4231c4 322 SUPERFAMILY SSF48371 170 309 1.56E-20 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS16325 2e8342759c0a3b837cdb33b33b4231c4 322 Gene3D G3DSA:1.25.10.10 163 299 7.1E-20 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS09015 ad1a7f28ac930296d99366251f3ebe9e 535 SUPERFAMILY SSF51905 480 529 3.09E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09015 ad1a7f28ac930296d99366251f3ebe9e 535 SUPERFAMILY SSF51905 101 288 3.09E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09015 ad1a7f28ac930296d99366251f3ebe9e 535 PIRSF PIRSF038984 1 535 1.6E-232 T 06-07-2017 IPR028348 FAD dependent protein APT55_RS09015 ad1a7f28ac930296d99366251f3ebe9e 535 Gene3D G3DSA:3.50.50.60 101 290 9.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09015 ad1a7f28ac930296d99366251f3ebe9e 535 Gene3D G3DSA:3.50.50.60 474 530 9.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11145 6e4a713c4782e56fa400216ba7aec09e 254 SUPERFAMILY SSF51735 11 248 3.89E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11145 6e4a713c4782e56fa400216ba7aec09e 254 Pfam PF01370 NAD dependent epimerase/dehydratase family 16 175 2.6E-20 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS11145 6e4a713c4782e56fa400216ba7aec09e 254 Gene3D G3DSA:3.40.50.720 10 209 6.7E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 Pfam PF01593 Flavin containing amine oxidoreductase 10 474 1.1E-63 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 Gene3D G3DSA:3.50.50.60 440 475 9.0E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 Gene3D G3DSA:3.50.50.60 194 306 9.0E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 PRINTS PR00419 Adrenodoxin reductase family signature 2 24 1.9E-5 T 06-07-2017 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 PRINTS PR00419 Adrenodoxin reductase family signature 25 38 1.9E-5 T 06-07-2017 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 Gene3D G3DSA:3.40.50.720 2 30 2.1E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 TIGRFAM TIGR02732 zeta_caro_desat: 9,9'-di-cis-zeta-carotene desaturase 2 474 8.7E-266 T 06-07-2017 IPR014103 Zeta-carotene desaturase GO:0016117|GO:0016719|GO:0055114 KEGG: 00906+1.3.5.6 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 Gene3D G3DSA:3.90.660.10 31 88 1.6E-4 T 06-07-2017 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 SUPERFAMILY SSF51905 1 321 3.37E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17825 3fb7b02e7f0c4b7b12882b4af10fbb6a 489 SUPERFAMILY SSF51905 434 475 3.37E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10445 1c6bdda827f6cda3679a7a6d009623c1 212 SMART SM00877 138 204 3.4E-6 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS10445 1c6bdda827f6cda3679a7a6d009623c1 212 SMART SM00877 35 117 0.54 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS27755 71cd873cb6513643cd64a2b167247946 210 Gene3D G3DSA:3.40.50.150 44 171 6.4E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27755 71cd873cb6513643cd64a2b167247946 210 SUPERFAMILY SSF53335 35 181 8.08E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27755 71cd873cb6513643cd64a2b167247946 210 Pfam PF13578 Methyltransferase domain 53 172 1.0E-18 T 06-07-2017 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 SUPERFAMILY SSF52096 3 189 9.95E-55 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 Pfam PF00574 Clp protease 3 185 2.3E-60 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 1 186 32.451 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 Gene3D G3DSA:3.90.226.10 3 189 3.4E-65 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 PRINTS PR00127 Clp protease catalytic subunit P signature 104 123 3.7E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 PRINTS PR00127 Clp protease catalytic subunit P signature 83 100 3.7E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 PRINTS PR00127 Clp protease catalytic subunit P signature 6 21 3.7E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 PRINTS PR00127 Clp protease catalytic subunit P signature 161 180 3.7E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08795 abe6af32ec520cb4421faa24366b0c9a 197 PRINTS PR00127 Clp protease catalytic subunit P signature 46 66 3.7E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 SUPERFAMILY SSF48019 192 313 6.89E-19 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 2 313 1.6E-44 T 06-07-2017 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 SUPERFAMILY SSF52540 2 173 9.74E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 Pfam PF06144 DNA polymerase III, delta subunit 4 168 3.8E-15 T 06-07-2017 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 Gene3D G3DSA:1.20.272.20 203 315 1.5E-5 T 06-07-2017 APT55_RS30055 e3eab95dea5bf86e350f88f6ab1fb10b 316 Gene3D G3DSA:1.10.8.60 123 202 1.7E-9 T 06-07-2017 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 Pfam PF03471 Transporter associated domain 350 428 3.1E-22 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 Gene3D G3DSA:3.10.580.10 202 328 2.2E-16 T 06-07-2017 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 Pfam PF01595 Domain of unknown function DUF21 9 201 3.0E-46 T 06-07-2017 IPR002550 Domain of unknown function DUF21 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 Gene3D G3DSA:3.30.465.10 329 428 1.2E-29 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 SUPERFAMILY SSF56176 344 427 5.18E-23 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 SMART SM01091 349 430 5.1E-31 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 SUPERFAMILY SSF54631 204 338 3.28E-25 T 06-07-2017 APT55_RS25365 774e3e185a492742c4b4908219fdd832 436 Pfam PF00571 CBS domain 286 335 3.6E-7 T 06-07-2017 IPR000644 CBS domain APT55_RS22315 1deacfc103255231829df09cbd03dd60 161 Pfam PF00502 Phycobilisome protein 7 160 2.1E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22315 1deacfc103255231829df09cbd03dd60 161 SUPERFAMILY SSF46458 2 160 2.88E-56 T 06-07-2017 IPR009050 Globin-like APT55_RS22315 1deacfc103255231829df09cbd03dd60 161 Gene3D G3DSA:1.10.490.20 2 161 2.0E-57 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22315 1deacfc103255231829df09cbd03dd60 161 PIRSF PIRSF000081 1 161 1.7E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS06850 a7acfa83c09248ce5ed018f34dbe3b17 423 Gene3D G3DSA:3.60.21.10 6 256 7.6E-41 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS06850 a7acfa83c09248ce5ed018f34dbe3b17 423 Pfam PF00149 Calcineurin-like phosphoesterase 6 217 7.6E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS06850 a7acfa83c09248ce5ed018f34dbe3b17 423 SUPERFAMILY SSF56300 4 300 2.78E-41 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS29670 543c7da8c398aa555f04b4969881e9c7 480 Gene3D G3DSA:3.40.50.300 193 471 2.5E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29670 543c7da8c398aa555f04b4969881e9c7 480 Pfam PF13614 AAA domain 193 369 4.3E-29 T 06-07-2017 IPR025669 AAA domain APT55_RS29670 543c7da8c398aa555f04b4969881e9c7 480 SUPERFAMILY SSF52540 192 471 5.32E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11735 3088dc53b68ff1cbc0e860e7b9b7fa85 332 Gene3D G3DSA:3.20.20.30 1 330 1.5E-77 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS11735 3088dc53b68ff1cbc0e860e7b9b7fa85 332 SUPERFAMILY SSF51679 1 330 3.4E-73 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS11735 3088dc53b68ff1cbc0e860e7b9b7fa85 332 Pfam PF00296 Luciferase-like monooxygenase 1 300 1.5E-59 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 Pfam PF12849 PBP superfamily domain 48 336 2.0E-62 T 06-07-2017 IPR024370 PBP domain APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 SUPERFAMILY SSF53850 57 365 3.05E-90 T 06-07-2017 APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 Gene3D G3DSA:3.40.190.10 56 200 2.7E-45 T 06-07-2017 APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 Gene3D G3DSA:3.40.190.10 211 363 1.2E-25 T 06-07-2017 APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 PIRSF PIRSF002756 11 367 8.1E-111 T 06-07-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT55_RS10165 98bef716421f159674d6aa2c368a0125 369 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 57 363 8.9E-100 T 06-07-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 PIRSF PIRSF005962 13 401 4.8E-140 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 Pfam PF01546 Peptidase family M20/M25/M40 85 398 4.2E-36 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 SUPERFAMILY SSF55031 194 312 3.53E-30 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS08400 178e71621365656b627ebb4119f661cd 401 SUPERFAMILY SSF53187 18 210 1.23E-87 T 06-07-2017 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 SUPERFAMILY SSF53187 311 400 1.23E-87 T 06-07-2017 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 Gene3D G3DSA:3.30.70.360 194 310 7.7E-41 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS08400 178e71621365656b627ebb4119f661cd 401 Gene3D G3DSA:3.40.630.10 13 191 1.2E-103 T 06-07-2017 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 Gene3D G3DSA:3.40.630.10 311 399 1.2E-103 T 06-07-2017 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 27 388 4.1E-120 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 APT55_RS08400 178e71621365656b627ebb4119f661cd 401 Pfam PF07687 Peptidase dimerisation domain 198 290 3.4E-7 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS13110 d079728a635d9287eccd727674f4b466 42 Pfam PF05969 Photosystem II complex subunit Ycf12 10 42 2.4E-14 T 06-07-2017 IPR010284 Photosystem II reaction centre protein Ycf12 GO:0009523|GO:0015979|GO:0016021 APT55_RS13110 d079728a635d9287eccd727674f4b466 42 Hamap MF_01329 Photosystem II reaction center protein Ycf12 [ycf12]. 10 42 12.825 T 06-07-2017 IPR010284 Photosystem II reaction centre protein Ycf12 GO:0009523|GO:0015979|GO:0016021 APT55_RS10095 b94316302ba39cdfd0d0ef5e668363c2 309 Pfam PF01734 Patatin-like phospholipase 5 189 1.7E-18 T 06-07-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 APT55_RS10095 b94316302ba39cdfd0d0ef5e668363c2 309 SUPERFAMILY SSF52151 2 298 9.68E-56 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS10095 b94316302ba39cdfd0d0ef5e668363c2 309 Gene3D G3DSA:3.40.1090.10 2 308 1.7E-92 T 06-07-2017 APT55_RS04760 2fbf16d5806858c7848b706bcb55cb21 286 Pfam PF00753 Metallo-beta-lactamase superfamily 31 260 6.3E-22 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS04760 2fbf16d5806858c7848b706bcb55cb21 286 SUPERFAMILY SSF56281 1 265 3.14E-34 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS04760 2fbf16d5806858c7848b706bcb55cb21 286 Gene3D G3DSA:3.60.15.10 1 265 1.1E-37 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS04760 2fbf16d5806858c7848b706bcb55cb21 286 SMART SM00849 31 260 1.4E-14 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18365 a3981fedb83713071ffb31673f3b549b 151 Pfam PF01724 Domain of unknown function DUF29 12 149 3.4E-55 T 06-07-2017 IPR002636 Protein from unkown function DUF29 APT55_RS17690 361cbcb24141f677faadb0a310240113 344 Pfam PF00248 Aldo/keto reductase family 15 310 3.5E-76 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS17690 361cbcb24141f677faadb0a310240113 344 Gene3D G3DSA:3.20.20.100 1 310 9.9E-98 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS17690 361cbcb24141f677faadb0a310240113 344 SUPERFAMILY SSF51430 1 310 1.17E-97 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS27215 25840fe65902922a935d482a6eaee495 460 SUPERFAMILY SSF56322 44 459 4.58E-98 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS27215 25840fe65902922a935d482a6eaee495 460 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 113 459 3.1E-102 T 06-07-2017 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 APT55_RS27215 25840fe65902922a935d482a6eaee495 460 Pfam PF00425 chorismate binding enzyme 199 451 4.8E-70 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal APT55_RS27215 25840fe65902922a935d482a6eaee495 460 Gene3D G3DSA:3.60.120.10 72 459 1.2E-93 T 06-07-2017 IPR005801 ADC synthase GO:0009058 APT55_RS31330 d170bb11ef4acc2a449ffa9e6bd81113 1068 SUPERFAMILY SSF52540 341 449 1.85E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31330 d170bb11ef4acc2a449ffa9e6bd81113 1068 SUPERFAMILY SSF52540 501 613 1.85E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31330 d170bb11ef4acc2a449ffa9e6bd81113 1068 Pfam PF12965 Domain of unknown function (DUF3854) 170 290 3.2E-35 T 06-07-2017 IPR024385 Domain of unknown function DUF3854 APT55_RS15475 04ea86769bd10e38ff0b8ab0170f995a 301 SUPERFAMILY SSF160240 216 286 8.89E-8 T 06-07-2017 APT55_RS15475 04ea86769bd10e38ff0b8ab0170f995a 301 SUPERFAMILY SSF161111 15 210 5.49E-52 T 06-07-2017 APT55_RS15475 04ea86769bd10e38ff0b8ab0170f995a 301 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 287 2.4E-73 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS15475 04ea86769bd10e38ff0b8ab0170f995a 301 Pfam PF01545 Cation efflux family 19 206 7.3E-42 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS15475 04ea86769bd10e38ff0b8ab0170f995a 301 Gene3D G3DSA:1.20.1510.10 16 205 1.4E-54 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain APT55_RS18360 83bae3c028e5c5325a20d7970bf4c427 294 Gene3D G3DSA:3.40.50.1820 6 290 4.1E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS18360 83bae3c028e5c5325a20d7970bf4c427 294 SUPERFAMILY SSF53474 6 289 1.53E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS18360 83bae3c028e5c5325a20d7970bf4c427 294 Pfam PF12697 Alpha/beta hydrolase family 29 279 1.6E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS07220 06057ea9c8a7efd0304723320d215af3 267 Pfam PF00535 Glycosyl transferase family 2 20 183 6.6E-34 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS07220 06057ea9c8a7efd0304723320d215af3 267 Gene3D G3DSA:3.90.550.10 18 209 1.2E-31 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS07220 06057ea9c8a7efd0304723320d215af3 267 SUPERFAMILY SSF53448 17 243 7.31E-47 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22040 415e36e153ca9a135ebcd8986afc2ab7 172 PIRSF PIRSF000081 1 172 4.6E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22040 415e36e153ca9a135ebcd8986afc2ab7 172 Pfam PF00502 Phycobilisome protein 7 170 3.0E-56 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22040 415e36e153ca9a135ebcd8986afc2ab7 172 TIGRFAM TIGR01339 phycocy_beta: phycocyanin, beta subunit 3 171 5.1E-85 T 06-07-2017 IPR006247 Phycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS22040 415e36e153ca9a135ebcd8986afc2ab7 172 Gene3D G3DSA:1.10.490.20 1 171 3.6E-64 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22040 415e36e153ca9a135ebcd8986afc2ab7 172 SUPERFAMILY SSF46458 1 172 9.4E-58 T 06-07-2017 IPR009050 Globin-like APT55_RS21325 d8269ee282e61df878ce15e271099c91 144 Pfam PF00805 Pentapeptide repeats (8 copies) 81 116 1.5E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21325 d8269ee282e61df878ce15e271099c91 144 Pfam PF00805 Pentapeptide repeats (8 copies) 38 75 1.8E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21325 d8269ee282e61df878ce15e271099c91 144 SUPERFAMILY SSF141571 39 135 2.22E-27 T 06-07-2017 APT55_RS21325 d8269ee282e61df878ce15e271099c91 144 Gene3D G3DSA:3.80.10.10 37 123 6.4E-4 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 SUPERFAMILY SSF69318 399 721 1.18E-40 T 06-07-2017 APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 403 463 1.2E-6 T 06-07-2017 APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 502 562 2.3E-9 T 06-07-2017 APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 SUPERFAMILY SSF141072 295 385 1.31E-10 T 06-07-2017 APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 Gene3D G3DSA:2.60.120.200 53 280 2.1E-18 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain APT55_RS03780 c5a78a2025169e0b07460f2235df31cc 755 SUPERFAMILY SSF49899 52 278 6.53E-21 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 Gene3D G3DSA:3.50.50.60 136 289 1.1E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 SUPERFAMILY SSF51905 1 74 9.26E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 SUPERFAMILY SSF51905 115 294 9.26E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 290 8.2E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 Gene3D G3DSA:3.30.390.30 316 433 1.5E-26 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 326 430 6.3E-21 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 398 3.8E-28 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 164 189 3.8E-28 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 318 339 3.8E-28 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 3.8E-28 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.8E-28 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 SUPERFAMILY SSF55424 325 435 9.45E-24 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 8.8E-12 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 164 182 8.8E-12 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 8.8E-12 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 8.8E-12 T 06-07-2017 APT55_RS09375 2343c1015c3f39ae13c74b52ea418b06 459 Gene3D G3DSA:3.50.50.60 2 135 1.6E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21865 b396613daf4849dee7b72b8cc67267e5 218 Gene3D G3DSA:3.30.1380.20 47 196 2.7E-18 T 06-07-2017 APT55_RS21865 b396613daf4849dee7b72b8cc67267e5 218 SMART SM00989 130 192 5.1E-11 T 06-07-2017 IPR004096 4-vinyl reductase, 4VR APT55_RS21865 b396613daf4849dee7b72b8cc67267e5 218 Pfam PF02830 V4R domain 133 191 1.8E-12 T 06-07-2017 IPR004096 4-vinyl reductase, 4VR APT55_RS21865 b396613daf4849dee7b72b8cc67267e5 218 SUPERFAMILY SSF111126 28 191 1.83E-21 T 06-07-2017 IPR024096 NO signalling/Golgi transport ligand-binding domain APT55_RS12265 c363214104b5d732565dd96afa409945 235 SUPERFAMILY SSF52172 1 138 4.41E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12265 c363214104b5d732565dd96afa409945 235 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 227 2.7E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 Gene3D G3DSA:3.40.50.2300 1 124 8.5E-29 T 06-07-2017 APT55_RS12265 c363214104b5d732565dd96afa409945 235 Gene3D G3DSA:1.10.10.10 125 234 1.3E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS12265 c363214104b5d732565dd96afa409945 235 SUPERFAMILY SSF46894 160 234 4.08E-22 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 SMART SM00448 2 120 1.0E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12265 c363214104b5d732565dd96afa409945 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 204 1.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 216 1.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 188 1.7E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 ProSitePatterns PS00622 LuxR-type HTH domain signature. 188 215 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS12265 c363214104b5d732565dd96afa409945 235 Pfam PF00072 Response regulator receiver domain 4 121 1.7E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12265 c363214104b5d732565dd96afa409945 235 SMART SM00421 171 228 6.4E-25 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 Pfam PF00593 TonB dependent receptor 604 851 4.3E-23 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 Gene3D G3DSA:2.170.130.10 156 283 1.0E-30 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 Pfam PF11741 AMIN domain 57 146 2.9E-6 T 06-07-2017 IPR021731 AMIN domain APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 Gene3D G3DSA:2.40.170.20 284 853 8.3E-70 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 Pfam PF07715 TonB-dependent Receptor Plug Domain 177 282 2.1E-18 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS25080 b89982df7d13da7eec21f3662ce62c95 853 SUPERFAMILY SSF56935 156 853 1.61E-96 T 06-07-2017 APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 SUPERFAMILY SSF51126 22 307 1.13E-35 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 SUPERFAMILY SSF51126 337 364 1.13E-35 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 Pfam PF05860 haemagglutination activity domain 25 141 8.5E-31 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 SMART SM00912 29 143 1.1E-16 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 Gene3D G3DSA:2.160.20.10 41 306 2.1E-25 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 SUPERFAMILY SSF51126 645 668 2.76E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 SUPERFAMILY SSF51126 514 597 2.76E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS24430 cb6b111e099c78cee0fc6b2c6c936fb1 896 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 56 138 3.7E-21 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS18640 8e6c9a2f25aad368c48873a85cb96f10 433 SUPERFAMILY SSF56349 147 428 4.47E-34 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS18640 8e6c9a2f25aad368c48873a85cb96f10 433 Gene3D G3DSA:1.10.443.10 237 429 1.5E-26 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS18640 8e6c9a2f25aad368c48873a85cb96f10 433 Pfam PF00589 Phage integrase family 240 424 6.0E-18 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 541 701 2.4E-13 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 Pfam PF02706 Chain length determinant protein 9 154 9.0E-16 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 Gene3D G3DSA:3.40.50.300 529 704 8.1E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 Pfam PF13807 G-rich domain on putative tyrosine kinase 378 452 1.3E-13 T 06-07-2017 IPR032807 Tyrosine kinase, G-rich domain APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 510 711 3.7E-49 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 APT55_RS13290 67c5a06aaef31bcb406416c882b6f7f3 734 SUPERFAMILY SSF52540 529 708 9.23E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 75 2.4E-17 T 06-07-2017 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Pfam PF01593 Flavin containing amine oxidoreductase 109 323 1.2E-12 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Gene3D G3DSA:3.50.50.60 287 330 8.0E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Gene3D G3DSA:3.50.50.60 6 44 8.0E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Gene3D G3DSA:3.50.50.60 114 180 8.0E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Gene3D G3DSA:3.90.660.10 46 113 6.5E-31 T 06-07-2017 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 Gene3D G3DSA:3.90.660.10 181 284 6.5E-31 T 06-07-2017 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 PRINTS PR00419 Adrenodoxin reductase family signature 7 29 1.9E-5 T 06-07-2017 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 PRINTS PR00419 Adrenodoxin reductase family signature 30 43 1.9E-5 T 06-07-2017 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 SUPERFAMILY SSF51905 290 327 6.29E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS20540 d679e46d492be6b4d2fcbef6b4d0c5d0 340 SUPERFAMILY SSF51905 1 190 6.29E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS29830 78deeef787fe0cf20b1b79ac4a63e72a 423 SUPERFAMILY SSF110849 70 116 5.23E-5 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS29830 78deeef787fe0cf20b1b79ac4a63e72a 423 SUPERFAMILY SSF110849 143 170 5.23E-5 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS29830 78deeef787fe0cf20b1b79ac4a63e72a 423 Gene3D G3DSA:3.90.1530.10 65 190 8.6E-7 T 06-07-2017 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 4 29 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 117 138 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 64 89 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 138 159 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 39 64 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 160 181 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PRINTS PR00088 Haem oxygenase signature 192 210 6.8E-63 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 Pfam PF01126 Heme oxygenase 4 206 1.4E-86 T 06-07-2017 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 SUPERFAMILY SSF48613 4 235 9.18E-81 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 ProSitePatterns PS00593 Heme oxygenase signature. 120 130 - T 06-07-2017 IPR018207 Haem oxygenase conserved site GO:0004392|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 Gene3D G3DSA:1.20.910.10 2 210 2.7E-78 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS21235 5c96224d17b20fbd8856a691b12db357 238 PIRSF PIRSF000343 1 233 2.1E-90 T 06-07-2017 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS22420 88e50b3df7e207af57adb373bd9debf9 244 Pfam PF04481 Protein of unknown function (DUF561) 2 239 2.3E-97 T 06-07-2017 IPR007570 Uncharacterised protein family Ycf23 APT55_RS22420 88e50b3df7e207af57adb373bd9debf9 244 Gene3D G3DSA:3.20.20.70 29 220 6.6E-18 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS22420 88e50b3df7e207af57adb373bd9debf9 244 SUPERFAMILY SSF51569 23 217 4.39E-24 T 06-07-2017 APT55_RS03870 be3303794f64762bb457382a9af805ab 382 Gene3D G3DSA:3.40.50.2000 178 358 2.3E-14 T 06-07-2017 APT55_RS03870 be3303794f64762bb457382a9af805ab 382 SUPERFAMILY SSF53756 8 381 2.98E-50 T 06-07-2017 APT55_RS03870 be3303794f64762bb457382a9af805ab 382 Pfam PF13692 Glycosyl transferases group 1 207 346 8.3E-20 T 06-07-2017 APT55_RS08460 e537e520f1488060b85987586a452a07 914 SUPERFAMILY SSF48371 531 713 7.19E-15 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS08460 e537e520f1488060b85987586a452a07 914 SUPERFAMILY SSF48371 793 811 7.19E-15 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS08460 e537e520f1488060b85987586a452a07 914 SUPERFAMILY SSF48371 465 499 7.19E-15 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS08460 e537e520f1488060b85987586a452a07 914 Gene3D G3DSA:1.25.10.10 457 636 2.2E-14 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS08460 e537e520f1488060b85987586a452a07 914 Gene3D G3DSA:1.25.10.10 645 714 2.9E-8 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS08460 e537e520f1488060b85987586a452a07 914 Pfam PF13646 HEAT repeats 646 715 2.1E-8 T 06-07-2017 APT55_RS08460 e537e520f1488060b85987586a452a07 914 Pfam PF05729 NACHT domain 80 217 5.8E-9 T 06-07-2017 APT55_RS08460 e537e520f1488060b85987586a452a07 914 Gene3D G3DSA:3.40.50.300 53 91 4.0E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08460 e537e520f1488060b85987586a452a07 914 Gene3D G3DSA:3.40.50.300 92 188 6.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08460 e537e520f1488060b85987586a452a07 914 SUPERFAMILY SSF52540 79 250 1.52E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24030 f7c244555b2f31c538460c8f1501f7bc 66 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 7 59 3.8E-8 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system APT55_RS24030 f7c244555b2f31c538460c8f1501f7bc 66 SUPERFAMILY SSF143100 2 61 4.05E-18 T 06-07-2017 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 SUPERFAMILY SSF51445 4 340 2.67E-55 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 Gene3D G3DSA:2.60.40.1180 370 435 2.1E-9 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 Pfam PF00128 Alpha amylase, catalytic domain 16 292 4.4E-17 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 SUPERFAMILY SSF51011 362 438 1.78E-8 T 06-07-2017 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 Gene3D G3DSA:3.20.20.80 3 332 2.5E-67 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 PRINTS PR00110 Alpha-amylase signature 281 293 5.5E-12 T 06-07-2017 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 PRINTS PR00110 Alpha-amylase signature 81 92 5.5E-12 T 06-07-2017 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 PRINTS PR00110 Alpha-amylase signature 46 63 5.5E-12 T 06-07-2017 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 PRINTS PR00110 Alpha-amylase signature 189 200 5.5E-12 T 06-07-2017 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 372 437 3.3E-5 T 06-07-2017 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS02395 3ae76a8fbe89822903d03c0514d31fb4 440 SMART SM00642 3 357 5.6E-37 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 SUPERFAMILY SSF56176 346 430 5.45E-21 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 Gene3D G3DSA:3.10.580.10 202 326 6.5E-21 T 06-07-2017 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 SMART SM00116 225 274 4.2 T 06-07-2017 IPR000644 CBS domain APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 SMART SM00116 287 335 8.8E-5 T 06-07-2017 IPR000644 CBS domain APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 Pfam PF00571 CBS domain 287 335 2.6E-8 T 06-07-2017 IPR000644 CBS domain APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 Gene3D G3DSA:3.30.465.10 327 431 2.4E-27 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 Pfam PF03471 Transporter associated domain 351 430 1.2E-19 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 SUPERFAMILY SSF54631 204 338 1.39E-30 T 06-07-2017 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 Pfam PF01595 Domain of unknown function DUF21 9 201 2.1E-46 T 06-07-2017 IPR002550 Domain of unknown function DUF21 APT55_RS20090 71daa25f6d38d481f94fc976b1880048 440 SMART SM01091 350 434 5.3E-26 T 06-07-2017 IPR005170 Transporter-associated domain APT55_RS14295 1359f933ed1e19032a5c8fbe566336d2 231 Gene3D G3DSA:3.60.15.10 3 226 1.0E-64 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS14295 1359f933ed1e19032a5c8fbe566336d2 231 SMART SM00849 12 172 2.5E-27 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS14295 1359f933ed1e19032a5c8fbe566336d2 231 Pfam PF00753 Metallo-beta-lactamase superfamily 11 172 1.2E-14 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS14295 1359f933ed1e19032a5c8fbe566336d2 231 SUPERFAMILY SSF56281 1 226 3.92E-55 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26370 a0636d9ab0c4ed6e76355dbd5e29f1d7 114 Pfam PF01934 Protein of unknown function DUF86 14 109 1.3E-24 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS26370 a0636d9ab0c4ed6e76355dbd5e29f1d7 114 Gene3D G3DSA:1.20.120.580 70 109 3.9E-6 T 06-07-2017 APT55_RS26370 a0636d9ab0c4ed6e76355dbd5e29f1d7 114 SUPERFAMILY SSF81593 16 110 7.46E-5 T 06-07-2017 APT55_RS28240 6de3cbc640defc7f5dc59511f3d5df71 202 SUPERFAMILY SSF53067 12 192 6.48E-24 T 06-07-2017 APT55_RS28240 6de3cbc640defc7f5dc59511f3d5df71 202 Pfam PF02685 Glucokinase 13 191 4.4E-53 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 APT55_RS28240 6de3cbc640defc7f5dc59511f3d5df71 202 Gene3D G3DSA:3.30.420.40 9 161 1.6E-34 T 06-07-2017 APT55_RS08040 58850eb2ea08688a9a7d2ebb099e4cc5 216 Gene3D G3DSA:3.40.50.2020 7 216 7.1E-65 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS08040 58850eb2ea08688a9a7d2ebb099e4cc5 216 SUPERFAMILY SSF53271 7 215 6.96E-62 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS08040 58850eb2ea08688a9a7d2ebb099e4cc5 216 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 7 216 5.9E-72 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT55_RS08040 58850eb2ea08688a9a7d2ebb099e4cc5 216 Pfam PF14681 Uracil phosphoribosyltransferase 9 216 6.2E-69 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS08040 58850eb2ea08688a9a7d2ebb099e4cc5 216 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 6 216 39.705 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT55_RS18775 43e4b9133689bd0088fef769e5798d2a 266 Pfam PF12698 ABC-2 family transporter protein 74 201 1.5E-8 T 06-07-2017 APT55_RS01530 7adcfffe0d7ce2588d853bd129e3239d 168 SUPERFAMILY SSF102405 11 100 2.35E-8 T 06-07-2017 APT55_RS26885 96ae253685cc27392326e71d5c5c24cb 108 SUPERFAMILY SSF46767 4 87 6.15E-22 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS26885 96ae253685cc27392326e71d5c5c24cb 108 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 5 65 1.5E-13 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS26885 96ae253685cc27392326e71d5c5c24cb 108 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 4 86 2.3E-24 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT55_RS26885 96ae253685cc27392326e71d5c5c24cb 108 Gene3D G3DSA:1.10.10.10 5 89 5.1E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS21640 d2d10618e48c68c8ebc35ad9f159d65a 166 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 11 161 4.1E-59 T 06-07-2017 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 APT55_RS21640 d2d10618e48c68c8ebc35ad9f159d65a 166 SUPERFAMILY SSF158694 5 162 4.58E-50 T 06-07-2017 APT55_RS21640 d2d10618e48c68c8ebc35ad9f159d65a 166 Pfam PF09349 OHCU decarboxylase 9 160 1.5E-44 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 APT55_RS21640 d2d10618e48c68c8ebc35ad9f159d65a 166 Gene3D G3DSA:1.10.3330.10 10 164 1.5E-53 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 APT55_RS13310 76fdc43f8da45c15dcb1f1b5bf2d9a3e 334 Gene3D G3DSA:3.90.550.10 4 200 1.5E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS13310 76fdc43f8da45c15dcb1f1b5bf2d9a3e 334 Pfam PF00535 Glycosyl transferase family 2 11 145 8.5E-18 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS13310 76fdc43f8da45c15dcb1f1b5bf2d9a3e 334 SUPERFAMILY SSF53448 3 229 8.84E-37 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12390 26b876c0a616cee8f0a7c5714c023239 186 Pfam PF13240 zinc-ribbon domain 162 184 4.5E-9 T 06-07-2017 IPR026870 Zinc-ribbon domain APT55_RS20585 c3d75008f1df80d6eb3f2544e3b4c771 489 Pfam PF00578 AhpC/TSA family 4 122 7.3E-10 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS20585 c3d75008f1df80d6eb3f2544e3b4c771 489 Gene3D G3DSA:2.120.10.30 171 450 2.1E-35 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS20585 c3d75008f1df80d6eb3f2544e3b4c771 489 SUPERFAMILY SSF101898 170 450 3.4E-28 T 06-07-2017 APT55_RS20585 c3d75008f1df80d6eb3f2544e3b4c771 489 SUPERFAMILY SSF52833 17 143 3.34E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS20585 c3d75008f1df80d6eb3f2544e3b4c771 489 Gene3D G3DSA:3.40.30.10 4 144 2.1E-38 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 Pfam PF00920 Dehydratase family 35 554 2.3E-206 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 5 557 44.861 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 SUPERFAMILY SSF143975 3 378 1.57E-131 T 06-07-2017 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 557 1.5E-234 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT55_RS13660 3ba0200f102f77cd75f76d22c9c36a6f 564 SUPERFAMILY SSF52016 380 560 2.51E-58 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel APT55_RS21345 c60002acde162a7579340867658cd2e5 571 Gene3D G3DSA:3.90.1200.10 247 331 4.5E-8 T 06-07-2017 APT55_RS21345 c60002acde162a7579340867658cd2e5 571 SUPERFAMILY SSF56112 114 177 3.37E-31 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21345 c60002acde162a7579340867658cd2e5 571 SUPERFAMILY SSF56112 221 447 3.37E-31 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21345 c60002acde162a7579340867658cd2e5 571 Pfam PF03109 ABC1 family 132 250 2.4E-38 T 06-07-2017 IPR004147 UbiB domain APT55_RS25555 1580d6c628e19c4812b68681e9bc73ba 167 SUPERFAMILY SSF55797 40 165 1.31E-20 T 06-07-2017 IPR014044 CAP domain APT55_RS25555 1580d6c628e19c4812b68681e9bc73ba 167 Gene3D G3DSA:3.40.33.10 42 165 8.4E-12 T 06-07-2017 IPR014044 CAP domain APT55_RS25555 1580d6c628e19c4812b68681e9bc73ba 167 Pfam PF00188 Cysteine-rich secretory protein family 48 164 1.4E-15 T 06-07-2017 IPR014044 CAP domain APT55_RS28900 a994006609bf128925bfe71d28c0e3b1 103 Pfam PF01381 Helix-turn-helix 44 93 9.3E-11 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS28900 a994006609bf128925bfe71d28c0e3b1 103 SUPERFAMILY SSF47413 38 97 2.25E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS28900 a994006609bf128925bfe71d28c0e3b1 103 SMART SM00530 41 96 1.3E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS28900 a994006609bf128925bfe71d28c0e3b1 103 Gene3D G3DSA:1.10.260.40 44 96 1.7E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS28095 21525564f539f74cdad3317a5748e80e 885 SUPERFAMILY SSF48208 408 649 3.32E-49 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS28095 21525564f539f74cdad3317a5748e80e 885 SUPERFAMILY SSF48208 699 878 3.32E-49 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SMART SM00304 269 321 2.2E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SMART SM00388 322 385 6.4E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 2.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 477 2.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 2.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 2.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SUPERFAMILY SSF55874 375 536 1.31E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 Gene3D G3DSA:3.30.565.10 372 536 5.5E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SUPERFAMILY SSF158472 271 318 9.02E-8 T 06-07-2017 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 536 6.4E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SUPERFAMILY SSF47384 305 385 3.73E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 Pfam PF00512 His Kinase A (phospho-acceptor) domain 322 383 2.9E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 Gene3D G3DSA:1.10.287.130 312 371 5.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 Pfam PF00672 HAMP domain 251 318 1.9E-14 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 APT55_RS07175 09f367c7bc690701e7a93d74d5cedf36 540 SMART SM00387 426 537 1.3E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 Gene3D G3DSA:1.10.760.10 192 374 2.1E-45 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 Pfam PF03150 Di-haem cytochrome c peroxidase 52 201 1.4E-41 T 06-07-2017 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 TIGRFAM TIGR04039 MXAN_0977_Heme2: di-heme enzyme, MXAN_0977 family 43 374 1.9E-159 T 06-07-2017 IPR023929 Di-heme enzyme, MXAN0977 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 PIRSF PIRSF000294 4 375 1.7E-69 T 06-07-2017 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 SUPERFAMILY SSF46626 30 191 1.54E-40 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 Gene3D G3DSA:1.10.760.10 42 191 2.9E-38 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS22135 b6448b74e25dd717218fb2c78012993a 376 SUPERFAMILY SSF46626 191 369 2.05E-29 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS05495 1e89b535053bd46d71ac8787f0b02dab 290 Gene3D G3DSA:3.40.50.150 102 285 5.8E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05495 1e89b535053bd46d71ac8787f0b02dab 290 SUPERFAMILY SSF53335 103 286 2.76E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05495 1e89b535053bd46d71ac8787f0b02dab 290 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 84 288 2.9E-42 T 06-07-2017 APT55_RS27355 b851753f29fc2cad0538f191074fe68a 540 SUPERFAMILY SSF102114 224 536 6.41E-37 T 06-07-2017 APT55_RS27355 b851753f29fc2cad0538f191074fe68a 540 SMART SM00729 223 435 4.0E-23 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS27355 b851753f29fc2cad0538f191074fe68a 540 Pfam PF04055 Radical SAM superfamily 227 388 1.9E-14 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS27355 b851753f29fc2cad0538f191074fe68a 540 Gene3D G3DSA:3.80.30.20 225 443 5.2E-33 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 Pfam PF08281 Sigma-70, region 4 117 168 5.5E-7 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 SUPERFAMILY SSF88659 108 170 9.53E-10 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 SUPERFAMILY SSF88946 10 85 4.71E-11 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 Gene3D G3DSA:1.25.40.10 365 398 1.4E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 Gene3D G3DSA:1.10.10.10 109 170 1.2E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 Gene3D G3DSA:1.10.1740.10 8 81 1.7E-9 T 06-07-2017 APT55_RS01380 518b2d192d24e2b6e2f90543f00bad7b 419 Pfam PF04542 Sigma-70 region 2 16 81 6.2E-9 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19900 ae0e567eaeac49ff61d9b9f6057d7b4a 97 Pfam PF01909 Nucleotidyltransferase domain 18 96 4.8E-18 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS19900 ae0e567eaeac49ff61d9b9f6057d7b4a 97 Gene3D G3DSA:3.30.460.10 2 95 1.6E-26 T 06-07-2017 APT55_RS19900 ae0e567eaeac49ff61d9b9f6057d7b4a 97 SUPERFAMILY SSF81301 2 97 2.66E-24 T 06-07-2017 APT55_RS26150 8a659655e1801d5da737f1cebad2b65a 185 SUPERFAMILY SSF50685 73 157 3.49E-14 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS26150 8a659655e1801d5da737f1cebad2b65a 185 Gene3D G3DSA:2.40.40.10 106 157 1.2E-5 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS26150 8a659655e1801d5da737f1cebad2b65a 185 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 71 165 1.9E-38 T 06-07-2017 IPR012997 Rare lipoprotein A APT55_RS26150 8a659655e1801d5da737f1cebad2b65a 185 Pfam PF03330 Lytic transglycolase 70 157 4.7E-23 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS01550 23497637b5f54ca6cc2b1bf3636a3194 386 TIGRFAM TIGR01185 devC: ABC exporter transmembrane subunit, DevC protein 6 386 3.5E-155 T 06-07-2017 IPR005891 DevC protein APT55_RS01550 23497637b5f54ca6cc2b1bf3636a3194 386 Pfam PF02687 FtsX-like permease family 271 382 1.4E-13 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS01550 23497637b5f54ca6cc2b1bf3636a3194 386 PIRSF PIRSF031773 1 386 4.7E-158 T 06-07-2017 IPR005891 DevC protein APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 2 329 45.055 T 06-07-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 2.8E-66 T 06-07-2017 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 328 3.4E-147 T 06-07-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 Gene3D G3DSA:1.10.1040.10 30 325 1.5E-115 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 SUPERFAMILY SSF48179 184 329 2.21E-67 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 SUPERFAMILY SSF51735 3 183 1.47E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12355 042dac67f81ee8e700cc7c9719bf50cf 331 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 178 6.9E-78 T 06-07-2017 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 Gene3D G3DSA:1.25.40.10 39 232 2.9E-30 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SUPERFAMILY SSF48452 42 230 4.32E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 Pfam PF14559 Tetratricopeptide repeat 100 153 2.1E-7 T 06-07-2017 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 Pfam PF13181 Tetratricopeptide repeat 205 231 0.015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SMART SM00028 53 86 450.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SMART SM00028 199 232 24.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SMART SM00028 165 198 0.71 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SMART SM00028 121 154 400.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13580 8ffbf256b95ed2cd6f18ba2360de48fd 280 SMART SM00028 87 120 41.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS14525 736bc5ad2de51d830ce0ef955626c9af 301 Gene3D G3DSA:1.10.3720.10 62 292 5.7E-68 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14525 736bc5ad2de51d830ce0ef955626c9af 301 SUPERFAMILY SSF161098 56 283 4.84E-67 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14525 736bc5ad2de51d830ce0ef955626c9af 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 290 1.7E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20725 0a8d93779aeb6ee3847381dea425a712 354 SUPERFAMILY SSF50022 26 142 1.27E-35 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS20725 0a8d93779aeb6ee3847381dea425a712 354 Pfam PF00355 Rieske [2Fe-2S] domain 31 112 1.7E-19 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS20725 0a8d93779aeb6ee3847381dea425a712 354 SUPERFAMILY SSF55961 130 351 4.39E-23 T 06-07-2017 APT55_RS20725 0a8d93779aeb6ee3847381dea425a712 354 Gene3D G3DSA:2.102.10.10 29 142 1.0E-34 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 Gene3D G3DSA:3.40.50.720 142 271 5.0E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 246 262 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 112 133 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 77 104 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 206 235 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 263 281 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 36 58 7.4E-80 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 Gene3D G3DSA:3.40.192.10 9 141 1.4E-47 T 06-07-2017 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 126 288 3.6E-69 T 06-07-2017 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 7 123 7.4E-38 T 06-07-2017 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 SUPERFAMILY SSF51735 125 286 1.25E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 Hamap MF_01576 Bifunctional protein FolD [folD]. 5 290 38.672 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 APT55_RS14835 d5cfad7ead9a89117902ab74d928c309 292 SUPERFAMILY SSF53223 5 124 1.92E-38 T 06-07-2017 APT55_RS22375 ab80673994219c73622f5ea0370edd48 422 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 3 263 3.9E-68 T 06-07-2017 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 APT55_RS22375 ab80673994219c73622f5ea0370edd48 422 SUPERFAMILY SSF56300 1 337 3.8E-54 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS22375 ab80673994219c73622f5ea0370edd48 422 Pfam PF00149 Calcineurin-like phosphoesterase 3 234 6.9E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS22375 ab80673994219c73622f5ea0370edd48 422 Gene3D G3DSA:3.60.21.10 1 283 2.1E-53 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS22275 b5b21b93036418391324ae70df6ad89e 277 SUPERFAMILY SSF53448 21 252 1.02E-42 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22275 b5b21b93036418391324ae70df6ad89e 277 Gene3D G3DSA:3.90.550.10 38 234 1.7E-31 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22275 b5b21b93036418391324ae70df6ad89e 277 Pfam PF00535 Glycosyl transferase family 2 40 208 5.3E-29 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS11700 1b0fa2f58f1e90b6ffc2387231d50b6e 99 SUPERFAMILY SSF54292 5 96 9.31E-29 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS11700 1b0fa2f58f1e90b6ffc2387231d50b6e 99 TIGRFAM TIGR02008 fdx_plant: ferredoxin [2Fe-2S] 2 98 5.3E-39 T 06-07-2017 IPR010241 Ferredoxin [2Fe-2S], plant GO:0009055|GO:0022900|GO:0051537 APT55_RS11700 1b0fa2f58f1e90b6ffc2387231d50b6e 99 Gene3D G3DSA:3.10.20.30 16 96 2.2E-33 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS11700 1b0fa2f58f1e90b6ffc2387231d50b6e 99 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 85 3.3E-19 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS11700 1b0fa2f58f1e90b6ffc2387231d50b6e 99 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS27580 b4544caa24016d205523165add46c59f 260 Pfam PF13267 Protein of unknown function (DUF4058) 1 249 1.4E-99 T 06-07-2017 IPR025132 Protein of unknown function DUF4058 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 Gene3D G3DSA:3.90.15.10 105 235 1.4E-42 T 06-07-2017 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 SUPERFAMILY SSF56349 96 319 9.12E-72 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 140 159 2.7E-10 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 184 200 2.7E-10 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 300 311 2.7E-10 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 249 263 2.7E-10 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 163 177 2.7E-10 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 Gene3D G3DSA:1.20.120.380 250 327 1.4E-24 T 06-07-2017 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 SUPERFAMILY SSF55869 40 101 5.49E-23 T 06-07-2017 APT55_RS12155 cd3f91faeacd437af5c039e96d29ceb7 356 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 102 315 2.8E-37 T 06-07-2017 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003918|GO:0006265 APT55_RS13045 9116276aa8e8e2683a338a3addf121ce 611 Pfam PF09992 Phosphodiester glycosidase 414 594 3.1E-7 T 06-07-2017 IPR018711 Phosphodiester glycosidase APT55_RS13045 9116276aa8e8e2683a338a3addf121ce 611 SUPERFAMILY SSF88713 152 321 1.88E-37 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS13045 9116276aa8e8e2683a338a3addf121ce 611 Gene3D G3DSA:3.20.20.370 164 326 2.6E-28 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS13045 9116276aa8e8e2683a338a3addf121ce 611 Pfam PF01522 Polysaccharide deacetylase 190 319 4.4E-25 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS21125 ad71314e27188bcfd0c45b19f288b7c1 233 TIGRFAM TIGR02466 TIGR02466: conserved hypothetical protein 5 206 4.3E-28 T 06-07-2017 IPR012668 Conserved hypothetical protein CHP02466 APT55_RS21125 ad71314e27188bcfd0c45b19f288b7c1 233 Gene3D G3DSA:2.60.120.620 7 210 3.0E-39 T 06-07-2017 APT55_RS21125 ad71314e27188bcfd0c45b19f288b7c1 233 Pfam PF13759 Putative 2OG-Fe(II) oxygenase 95 205 1.7E-20 T 06-07-2017 IPR012668 Conserved hypothetical protein CHP02466 APT55_RS17325 41f29601f378564f11823d76fc412ec8 117 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 14 101 1.9E-24 T 06-07-2017 IPR009241 Toxin HigB-like APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 Pfam PF03562 MltA specific insert domain 56 285 1.5E-54 T 06-07-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 SUPERFAMILY SSF50685 53 387 4.53E-94 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 Gene3D G3DSA:2.40.40.10 196 387 4.6E-37 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 Gene3D G3DSA:2.40.40.10 72 168 4.5E-14 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 Pfam PF06725 3D domain 304 384 1.7E-23 T 06-07-2017 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 PIRSF PIRSF019422 1 387 4.2E-101 T 06-07-2017 IPR026044 Membrane-bound lytic murein transglycosylase A APT55_RS01500 a3d7c4fdcd0722a2e0a98aed78bca04f 387 SMART SM00925 144 285 2.2E-51 T 06-07-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Gene3D G3DSA:3.40.50.720 106 282 6.7E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 SUPERFAMILY SSF52283 1 133 8.32E-39 T 06-07-2017 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 280 6.9E-60 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 312 2.6E-40 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 SUPERFAMILY SSF51735 99 281 9.14E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Gene3D G3DSA:3.30.1330.90 317 445 1.1E-43 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Pfam PF01842 ACT domain 453 516 6.1E-11 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 3 526 2.7E-219 T 06-07-2017 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 SUPERFAMILY SSF55021 442 522 6.87E-18 T 06-07-2017 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 SUPERFAMILY SSF143548 318 448 1.23E-35 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 219 235 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Gene3D G3DSA:3.40.50.720 1 105 1.8E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 142 169 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT55_RS01050 cd0a55a00af85d806fd4114b30cd635e 526 Gene3D G3DSA:3.30.70.260 446 521 1.2E-21 T 06-07-2017 APT55_RS09605 09fbac05764b3de5e8aac4338824fc34 274 Gene3D G3DSA:3.40.50.150 48 174 7.8E-11 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09605 09fbac05764b3de5e8aac4338824fc34 274 SUPERFAMILY SSF53335 42 191 2.19E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09605 09fbac05764b3de5e8aac4338824fc34 274 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 143 149 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS11300 fca505203b5ca2e3810b9a7c5c7e6b4f 186 SUPERFAMILY SSF52980 7 180 3.27E-17 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS11300 fca505203b5ca2e3810b9a7c5c7e6b4f 186 Pfam PF05685 Putative restriction endonuclease 14 179 2.6E-29 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS11300 fca505203b5ca2e3810b9a7c5c7e6b4f 186 Gene3D G3DSA:3.90.1570.10 8 183 1.9E-15 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS31585 e1b6f09cff49fcd7b74c33f13c4c4ebb 121 Pfam PF01420 Type I restriction modification DNA specificity domain 7 60 9.6E-5 T 06-07-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APT55_RS31585 e1b6f09cff49fcd7b74c33f13c4c4ebb 121 SUPERFAMILY SSF116734 2 95 1.54E-15 T 06-07-2017 APT55_RS07830 cf466d7c75877ffe07eba0ff90fbb142 294 Pfam PF01758 Sodium Bile acid symporter family 12 192 1.9E-36 T 06-07-2017 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 APT55_RS25175 2b54536a338f1c66da849aad16f8a757 316 SUPERFAMILY SSF50475 181 292 8.84E-10 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS25175 2b54536a338f1c66da849aad16f8a757 316 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 180 274 1.2E-12 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS25175 2b54536a338f1c66da849aad16f8a757 316 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 42 130 5.0E-5 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT55_RS25175 2b54536a338f1c66da849aad16f8a757 316 Gene3D G3DSA:2.30.110.10 39 135 1.5E-4 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS25175 2b54536a338f1c66da849aad16f8a757 316 Gene3D G3DSA:2.30.110.10 175 291 9.0E-13 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS18520 1907b5d1a92ce220961127ee60143549 388 Gene3D G3DSA:1.10.3720.10 171 383 4.7E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18520 1907b5d1a92ce220961127ee60143549 388 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 3 60 1.1E-8 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT55_RS18520 1907b5d1a92ce220961127ee60143549 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 384 1.5E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18520 1907b5d1a92ce220961127ee60143549 388 SUPERFAMILY SSF161098 172 369 2.62E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 SUPERFAMILY SSF52833 1 80 1.68E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 173 1.0E-7 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 73 3.9E-20 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 Gene3D G3DSA:3.40.30.10 1 78 8.5E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 SUPERFAMILY SSF47616 80 182 8.07E-22 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS11345 a602c87ca797b24460aa6c9e97c2a0db 183 Gene3D G3DSA:1.20.1050.10 106 182 4.6E-19 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS02695 21e039c70c36b5e1db06caf3e6c4eec3 565 Pfam PF04966 Carbohydrate-selective porin, OprB family 147 565 1.4E-60 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS02695 21e039c70c36b5e1db06caf3e6c4eec3 565 Pfam PF00395 S-layer homology domain 81 123 3.7E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 SUPERFAMILY SSF51735 5 315 1.13E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Gene3D G3DSA:3.90.25.10 278 315 2.0E-24 T 06-07-2017 APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Gene3D G3DSA:3.90.25.10 175 222 2.0E-24 T 06-07-2017 APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Gene3D G3DSA:3.40.50.720 223 262 6.1E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Gene3D G3DSA:3.40.50.720 5 174 6.1E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 242 3.1E-58 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS20590 d2e4090e611f621a4fca103ba507fe64 316 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 10 313 44.522 T 06-07-2017 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00010+1.1.1.27|KEGG: 00051+1.1.1.271|KEGG: 00270+1.1.1.27|KEGG: 00520+1.1.1.271|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-66|MetaCyc: PWY-6901|Reactome: R-HSA-6787639 APT55_RS08495 48a89a8afd3ed9c2bb734fe840276fc9 100 Pfam PF03683 Uncharacterised protein family (UPF0175) 6 63 1.3E-9 T 06-07-2017 IPR005368 Uncharacterised protein family UPF0175 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 SUPERFAMILY SSF89095 322 427 1.7E-35 T 06-07-2017 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 Pfam PF02934 GatB/GatE catalytic domain 14 311 1.6E-111 T 06-07-2017 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 Pfam PF02637 GatB domain 353 500 1.8E-56 T 06-07-2017 IPR018027 Asn/Gln amidotransferase GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 10 501 39.036 T 06-07-2017 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 169 183 - T 06-07-2017 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 SMART SM00845 353 500 2.7E-83 T 06-07-2017 IPR018027 Asn/Gln amidotransferase GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 9 501 1.8E-191 T 06-07-2017 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 SUPERFAMILY SSF55931 12 321 9.16E-117 T 06-07-2017 APT55_RS17595 91bd6253ce2b1696382c2bfe10747467 503 Gene3D G3DSA:1.10.10.410 446 501 4.4E-4 T 06-07-2017 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal APT55_RS06615 d8d121b943250dcf1a04999f41211d14 208 SUPERFAMILY SSF52833 106 182 2.01E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS06615 d8d121b943250dcf1a04999f41211d14 208 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 105 179 1.8E-8 T 06-07-2017 APT55_RS06615 d8d121b943250dcf1a04999f41211d14 208 Gene3D G3DSA:3.40.30.10 106 181 1.1E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.1E-19 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 SUPERFAMILY SSF48498 90 202 4.39E-10 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.0E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.0E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 SUPERFAMILY SSF46689 7 85 3.59E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 Gene3D G3DSA:1.10.357.10 9 201 3.5E-38 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 APT55_RS15560 4629efbed8709a68a8b4112586a6f412 209 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 62 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT55_RS31325 5eee944b590dd0c439472be52acdd314 659 Gene3D G3DSA:1.10.260.40 604 645 5.5E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31325 5eee944b590dd0c439472be52acdd314 659 Pfam PF01381 Helix-turn-helix 607 644 4.0E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS31325 5eee944b590dd0c439472be52acdd314 659 SUPERFAMILY SSF47413 604 655 8.61E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS28975 0f27108b480613afcb62936ce6886ab9 287 Pfam PF13649 Methyltransferase domain 62 131 8.9E-9 T 06-07-2017 APT55_RS28975 0f27108b480613afcb62936ce6886ab9 287 Gene3D G3DSA:3.40.50.150 49 170 1.7E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS28975 0f27108b480613afcb62936ce6886ab9 287 SUPERFAMILY SSF53335 38 160 6.22E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 SUPERFAMILY SSF51735 106 274 3.13E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 Gene3D G3DSA:3.40.192.10 3 110 1.7E-41 T 06-07-2017 APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 SUPERFAMILY SSF53223 3 105 2.13E-33 T 06-07-2017 APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 8 272 32.816 T 06-07-2017 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 Gene3D G3DSA:3.40.50.720 111 274 2.1E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 9 274 6.6E-64 T 06-07-2017 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT55_RS06950 8666c7b16e085dfa6705eefe46fbb4a0 280 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 13 93 2.0E-27 T 06-07-2017 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT55_RS22700 30b3758d30d49e0c7f464b1316882ea8 156 Pfam PF13664 Domain of unknown function (DUF4149) 20 114 7.9E-6 T 06-07-2017 IPR025423 Domain of unknown function DUF4149 APT55_RS21275 89c9c69eec6c0546843ec1e245a40923 224 SUPERFAMILY SSF52266 24 220 9.77E-51 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS21275 89c9c69eec6c0546843ec1e245a40923 224 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 52 211 2.8E-25 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS21275 89c9c69eec6c0546843ec1e245a40923 224 Gene3D G3DSA:3.40.50.1110 19 220 5.6E-52 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 791 830 7.3E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1179 1226 1.5E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 879 918 2.9E-10 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 751 789 7.8E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 671 710 0.7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 961 1000 8.9E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1138 1177 4.5E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 832 877 1.1 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 920 959 4.7E-9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1228 1271 0.0061 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1002 1041 2.2E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 712 748 0.06 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1043 1082 2.5E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00320 1094 1130 6.7E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SUPERFAMILY SSF55785 433 554 1.52E-22 T 06-07-2017 IPR000014 PAS domain APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SUPERFAMILY SSF50952 996 1276 1.12E-48 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SUPERFAMILY SSF50978 680 840 1.4E-36 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Gene3D G3DSA:2.130.10.10 677 864 3.5E-49 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Gene3D G3DSA:2.130.10.10 1117 1273 1.1E-39 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Gene3D G3DSA:2.130.10.10 865 1116 2.2E-71 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 1096 1129 0.0031 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 1044 1082 7.5E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 792 830 6.4E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 1180 1226 1.3E-4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 1141 1177 3.3E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 967 999 1.0E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 922 958 3.6E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 848 877 0.025 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 726 748 0.0067 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 881 918 9.8E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 752 789 0.1 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF00400 WD domain, G-beta repeat 1010 1041 8.4E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 905 919 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00091 444 510 2.2E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 440 563 5.4E-14 T 06-07-2017 IPR000014 PAS domain APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Gene3D G3DSA:3.30.450.20 439 554 9.8E-27 T 06-07-2017 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SUPERFAMILY SSF52540 21 261 5.93E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Gene3D G3DSA:3.40.50.300 44 170 6.6E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 817 831 - T 06-07-2017 IPR019775 WD40 repeat, conserved site APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF14516 AAA-like domain 11 362 2.0E-26 T 06-07-2017 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 Pfam PF08447 PAS fold 488 551 6.4E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SUPERFAMILY SSF50978 793 1083 8.55E-78 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 SMART SM00086 516 558 0.001 T 06-07-2017 IPR001610 PAC motif APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 PRINTS PR00320 G protein beta WD-40 repeat signature 1213 1227 2.7E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 PRINTS PR00320 G protein beta WD-40 repeat signature 1164 1178 2.7E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS27045 59097a921918eb0639e44492cf727f5c 1308 PRINTS PR00320 G protein beta WD-40 repeat signature 905 919 2.7E-6 T 06-07-2017 IPR020472 G-protein beta WD-40 repeat APT55_RS02085 5f8a13106cb2683ab22a8b3198971dfe 246 Pfam PF00427 Phycobilisome Linker polypeptide 38 162 5.1E-45 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS02085 5f8a13106cb2683ab22a8b3198971dfe 246 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 41 176 2.0E-50 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS01675 df448c7a2efc46aeca5b24d186c92a27 387 Pfam PF13439 Glycosyltransferase Family 4 15 172 2.2E-19 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS01675 df448c7a2efc46aeca5b24d186c92a27 387 SUPERFAMILY SSF53756 3 380 3.4E-78 T 06-07-2017 APT55_RS01675 df448c7a2efc46aeca5b24d186c92a27 387 Gene3D G3DSA:3.40.50.2000 154 363 3.7E-32 T 06-07-2017 APT55_RS01675 df448c7a2efc46aeca5b24d186c92a27 387 Pfam PF00534 Glycosyl transferases group 1 182 351 2.1E-31 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 SUPERFAMILY SSF50156 8 98 1.71E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 Gene3D G3DSA:3.20.20.70 133 271 5.7E-7 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 Gene3D G3DSA:2.30.42.10 9 71 4.1E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 SUPERFAMILY SSF102114 92 259 2.16E-9 T 06-07-2017 APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 TIGRFAM TIGR03279 cyano_FeS_chp: putative radical SAM enzyme, TIGR03279 family 11 440 7.0E-235 T 06-07-2017 IPR017673 Putative radical SAM enzyme, CHP03279 family APT55_RS22555 e69351bd23b8f4ddbe854081eda52c36 448 Pfam PF04459 Protein of unknown function (DUF512) 229 431 2.7E-71 T 06-07-2017 IPR007549 Domain of unknown function DUF512 APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 371 385 6.8E-10 T 06-07-2017 IPR003004 GspF/PilC family APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 167 195 6.8E-10 T 06-07-2017 IPR003004 GspF/PilC family APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 68 80 6.8E-10 T 06-07-2017 IPR003004 GspF/PilC family APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 387 406 6.8E-10 T 06-07-2017 IPR003004 GspF/PilC family APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 Pfam PF00482 Type II secretion system (T2SS), protein F 276 398 3.8E-31 T 06-07-2017 IPR018076 Type II secretion system F domain APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 Pfam PF00482 Type II secretion system (T2SS), protein F 72 195 9.6E-33 T 06-07-2017 IPR018076 Type II secretion system F domain APT55_RS12515 5c74a8ab55379b79b45acdb054a71733 407 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 167 195 - T 06-07-2017 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 APT55_RS17020 f1deb1dd5688017e8e3a9648c53bcfe8 370 SUPERFAMILY SSF53383 15 367 1.07E-121 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS17020 f1deb1dd5688017e8e3a9648c53bcfe8 370 Gene3D G3DSA:3.40.640.10 16 245 2.2E-87 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS17020 f1deb1dd5688017e8e3a9648c53bcfe8 370 Gene3D G3DSA:3.90.1150.10 247 368 2.5E-44 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS17020 f1deb1dd5688017e8e3a9648c53bcfe8 370 PIRSF PIRSF000390 6 370 1.9E-115 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS17020 f1deb1dd5688017e8e3a9648c53bcfe8 370 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 364 1.8E-132 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Pfam PF01926 50S ribosome-binding GTPase 4 115 2.4E-23 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Gene3D G3DSA:3.40.50.300 200 266 4.2E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Gene3D G3DSA:3.40.50.300 3 130 4.2E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 4 24 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.8E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 SUPERFAMILY SSF81271 279 360 3.27E-35 T 06-07-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Gene3D G3DSA:1.10.150.300 131 199 3.8E-23 T 06-07-2017 IPR023192 TGS-like domain APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.5E-159 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 5.8E-40 T 06-07-2017 IPR013029 Domain of unknown function DUF933 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 SUPERFAMILY SSF52540 2 299 6.16E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 1 363 42.994 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 PIRSF PIRSF006641 1 363 2.1E-154 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 APT55_RS10190 bad8e4edff4a3f8d6778da0712731482 363 Gene3D G3DSA:3.10.20.30 267 363 7.0E-48 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS21550 670e91c5a167840ffc3535f81aec064d 148 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 7 145 4.5E-22 T 06-07-2017 IPR019587 Polyketide cyclase/dehydrase APT55_RS21550 670e91c5a167840ffc3535f81aec064d 148 SUPERFAMILY SSF55961 7 145 1.59E-21 T 06-07-2017 APT55_RS21550 670e91c5a167840ffc3535f81aec064d 148 Gene3D G3DSA:3.30.530.20 7 135 3.6E-8 T 06-07-2017 IPR023393 START-like domain APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Gene3D G3DSA:1.25.10.10 940 1134 4.2E-40 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Gene3D G3DSA:1.25.10.10 163 403 8.5E-40 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SUPERFAMILY SSF52540 539 730 3.28E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 955 986 95.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 206 237 8.4 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 272 303 32.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 1021 1049 31.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 305 336 0.0043 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 140 171 78.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 107 138 510.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 239 270 230.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 36 72 710.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 173 204 240.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 1051 1082 5.0E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 988 1019 5.0E-6 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 1084 1115 0.081 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SMART SM00567 E-Z type HEAT repeats 76 105 370.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Pfam PF02985 HEAT repeat 1072 1097 9.3E-5 T 06-07-2017 IPR000357 HEAT repeat GO:0005515 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Gene3D G3DSA:3.40.50.300 547 650 2.9E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Pfam PF13646 HEAT repeats 163 248 4.6E-10 T 06-07-2017 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Pfam PF13646 HEAT repeats 976 1062 1.5E-15 T 06-07-2017 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 Pfam PF13646 HEAT repeats 261 345 5.8E-14 T 06-07-2017 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SUPERFAMILY SSF48371 48 152 1.32E-8 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SUPERFAMILY SSF48371 917 1132 3.12E-50 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SUPERFAMILY SSF48371 133 187 3.12E-50 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS23145 ec41717d1ef9fd8f62b0daa99d1c00d5 1151 SUPERFAMILY SSF48371 214 358 3.12E-50 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 5.7E-8 T 06-07-2017 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 5.7E-8 T 06-07-2017 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 5.7E-8 T 06-07-2017 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 223 244 5.7E-8 T 06-07-2017 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 14 447 7.2E-127 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 10 487 17.565 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 APT55_RS15755 70f5241343e41cbf15c8131321eca0a7 528 Pfam PF00361 Proton-conducting membrane transporter 130 426 5.6E-82 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS21185 ab82539a065de0a25bdef348e5fe9485 261 Gene3D G3DSA:3.40.50.150 28 260 1.2E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS21185 ab82539a065de0a25bdef348e5fe9485 261 SUPERFAMILY SSF53335 2 233 4.15E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS21185 ab82539a065de0a25bdef348e5fe9485 261 Pfam PF13649 Methyltransferase domain 41 134 6.4E-19 T 06-07-2017 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SMART SM00028 234 267 310.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SMART SM00028 45 78 320.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SMART SM00028 11 44 0.002 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 Gene3D G3DSA:1.25.40.10 14 64 2.7E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 Gene3D G3DSA:1.25.40.10 220 298 2.7E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 Pfam PF13414 TPR repeat 21 56 2.3E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SUPERFAMILY SSF53756 377 656 4.71E-8 T 06-07-2017 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 Pfam PF13844 Glycosyl transferase family 41 376 529 2.8E-20 T 06-07-2017 IPR029489 O-GlcNAc transferase, C-terminal Reactome: R-HSA-3214847 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 Pfam PF13844 Glycosyl transferase family 41 540 735 7.5E-30 T 06-07-2017 IPR029489 O-GlcNAc transferase, C-terminal Reactome: R-HSA-3214847 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SUPERFAMILY SSF48452 214 294 3.32E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS06570 d4eb072a0a92e5112e10a906990bdf5a 741 SUPERFAMILY SSF48452 16 68 3.32E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07370 2b59b6801edd989cb1d38664d018cd7a 306 Gene3D G3DSA:3.90.550.10 6 241 8.7E-47 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS07370 2b59b6801edd989cb1d38664d018cd7a 306 Pfam PF00535 Glycosyl transferase family 2 9 148 1.7E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS07370 2b59b6801edd989cb1d38664d018cd7a 306 SUPERFAMILY SSF53448 6 219 1.78E-44 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS21030 44937f676076a5f9e3e90a21e482bbd2 29 Pfam PF03742 PetN 1 29 7.3E-20 T 06-07-2017 IPR005497 Cytochrome b6-f complex, subunit 8 GO:0009512|GO:0017004|GO:0045158 APT55_RS21030 44937f676076a5f9e3e90a21e482bbd2 29 SUPERFAMILY SSF103451 1 29 2.75E-13 T 06-07-2017 IPR005497 Cytochrome b6-f complex, subunit 8 GO:0009512|GO:0017004|GO:0045158 APT55_RS21030 44937f676076a5f9e3e90a21e482bbd2 29 Hamap MF_00395 Cytochrome b6-f complex subunit 8 [petN]. 2 29 14.126 T 06-07-2017 IPR005497 Cytochrome b6-f complex, subunit 8 GO:0009512|GO:0017004|GO:0045158 APT55_RS18685 8ac4abdc1540db906e4d76ff2b1f8c6e 169 SUPERFAMILY SSF50324 7 167 4.58E-62 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 APT55_RS18685 8ac4abdc1540db906e4d76ff2b1f8c6e 169 Gene3D G3DSA:3.90.80.10 5 167 5.9E-56 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 APT55_RS18685 8ac4abdc1540db906e4d76ff2b1f8c6e 169 Pfam PF00719 Inorganic pyrophosphatase 17 167 2.0E-53 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 APT55_RS18685 8ac4abdc1540db906e4d76ff2b1f8c6e 169 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 64 70 - T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 APT55_RS18685 8ac4abdc1540db906e4d76ff2b1f8c6e 169 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 13 169 35.092 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 APT55_RS23865 89b046efd8e7991237a12bffd90ddaee 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.6E-23 T 06-07-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS23865 89b046efd8e7991237a12bffd90ddaee 78 Gene3D G3DSA:2.30.170.40 2 74 1.3E-28 T 06-07-2017 APT55_RS23865 89b046efd8e7991237a12bffd90ddaee 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 78 17.52 T 06-07-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS23865 89b046efd8e7991237a12bffd90ddaee 78 SUPERFAMILY SSF143800 2 75 7.85E-25 T 06-07-2017 APT55_RS23865 89b046efd8e7991237a12bffd90ddaee 78 Pfam PF00830 Ribosomal L28 family 3 61 5.9E-20 T 06-07-2017 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS10060 b3d1b34d10d58f12c23f6d3c689acfcd 200 Pfam PF02525 Flavodoxin-like fold 1 139 1.5E-34 T 06-07-2017 IPR003680 Flavodoxin-like fold APT55_RS10060 b3d1b34d10d58f12c23f6d3c689acfcd 200 SUPERFAMILY SSF52218 1 197 7.45E-45 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS10060 b3d1b34d10d58f12c23f6d3c689acfcd 200 Gene3D G3DSA:3.40.50.360 1 197 2.0E-40 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS22935 cf3d732bccbbdceb0da7ba9985f46b34 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 284 1.5E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS12710 3b069bd6e915d0d448f5924d111e93ad 215 SUPERFAMILY SSF51161 10 189 1.7E-38 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS12710 3b069bd6e915d0d448f5924d111e93ad 215 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 147 1.6E-4 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS12710 3b069bd6e915d0d448f5924d111e93ad 215 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 41 75 6.1E-8 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS12710 3b069bd6e915d0d448f5924d111e93ad 215 Gene3D G3DSA:2.160.10.10 10 171 8.5E-37 T 06-07-2017 APT55_RS12820 3b4e9fe9aaf3415cbb182a14043c5353 479 Pfam PF01523 Putative modulator of DNA gyrase 22 324 8.9E-46 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS12820 3b4e9fe9aaf3415cbb182a14043c5353 479 SUPERFAMILY SSF111283 9 474 3.14E-91 T 06-07-2017 APT55_RS17155 797b3fde4166c018a46ed28310159053 161 Pfam PF00502 Phycobilisome protein 6 160 6.3E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS17155 797b3fde4166c018a46ed28310159053 161 Gene3D G3DSA:1.10.490.20 2 161 1.1E-55 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS17155 797b3fde4166c018a46ed28310159053 161 SUPERFAMILY SSF46458 2 161 1.38E-54 T 06-07-2017 IPR009050 Globin-like APT55_RS17155 797b3fde4166c018a46ed28310159053 161 PIRSF PIRSF000081 1 161 1.5E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 06-07-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 Pfam PF00462 Glutaredoxin 5 65 6.8E-22 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 PRINTS PR00160 Glutaredoxin signature 5 23 2.0E-16 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 PRINTS PR00160 Glutaredoxin signature 62 75 2.0E-16 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 PRINTS PR00160 Glutaredoxin signature 48 61 2.0E-16 T 06-07-2017 IPR014025 Glutaredoxin subgroup APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 Gene3D G3DSA:3.40.30.10 3 81 3.0E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 SUPERFAMILY SSF52833 3 85 1.43E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01450 031e15d9e5ee026ad4b07e31ee4adbfe 86 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 8.4E-37 T 06-07-2017 IPR011900 Glutaredoxin, GrxC GO:0045454 APT55_RS19520 edfbfba387a9042d5177bfedf41e2d20 158 Pfam PF13411 MerR HTH family regulatory protein 9 73 3.2E-6 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS19520 edfbfba387a9042d5177bfedf41e2d20 158 SUPERFAMILY SSF46955 5 94 2.33E-5 T 06-07-2017 IPR009061 Putative DNA-binding domain APT55_RS19520 edfbfba387a9042d5177bfedf41e2d20 158 Gene3D G3DSA:1.10.1660.10 8 78 6.7E-7 T 06-07-2017 APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 SUPERFAMILY SSF52540 308 527 2.41E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 ProSitePatterns PS00211 ABC transporters family signature. 442 456 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Pfam PF00005 ABC transporter 20 186 7.4E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Pfam PF00005 ABC transporter 334 470 1.4E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 SMART SM00382 28 231 8.6E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 SMART SM00382 342 515 2.9E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 SUPERFAMILY SSF52540 5 239 2.76E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Pfam PF12848 ABC transporter 225 300 1.5E-11 T 06-07-2017 IPR032781 ABC-transporter extension domain APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Pfam PF16326 ABC transporter C-terminal domain 558 625 1.3E-17 T 06-07-2017 IPR032524 ABC transporter Uup, C-terminal GO:0003677 APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Gene3D G3DSA:3.40.50.300 2 261 4.2E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04975 7782ad0823edea091347675f84baa7b5 628 Gene3D G3DSA:3.40.50.300 315 535 4.3E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04570 701aa233b8aebe7b6ba689553179f2a1 212 SUPERFAMILY SSF52833 1 71 7.18E-14 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04570 701aa233b8aebe7b6ba689553179f2a1 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 72 9.5E-12 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS04570 701aa233b8aebe7b6ba689553179f2a1 212 Gene3D G3DSA:3.40.30.10 1 71 3.3E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Gene3D G3DSA:1.10.287.130 193 224 5.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Gene3D G3DSA:1.10.287.130 262 291 5.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SUPERFAMILY SSF55785 27 145 1.42E-7 T 06-07-2017 IPR000014 PAS domain APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 294 1.1E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SMART SM00387 340 451 1.4E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SMART SM00388 198 295 5.6E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 448 4.0E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Gene3D G3DSA:3.30.565.10 293 451 3.2E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SUPERFAMILY SSF47384 180 233 9.02E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SUPERFAMILY SSF47384 263 293 9.02E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 3.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 3.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 448 3.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 3.7E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 SUPERFAMILY SSF55874 282 449 6.55E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS04595 14ba86d0c3356f4e6510fe18efc9012b 457 Gene3D G3DSA:3.30.450.20 11 135 5.8E-9 T 06-07-2017 APT55_RS17915 dad20536e4fa0bc89f123634ec8943bd 406 PIRSF PIRSF019435 1 406 1.5E-110 T 06-07-2017 IPR008508 Protein of unknown function DUF790, endonuclease-like APT55_RS17915 dad20536e4fa0bc89f123634ec8943bd 406 Gene3D G3DSA:3.40.91.30 284 381 1.5E-12 T 06-07-2017 IPR011578 Restriction endonuclease, FokI, C-terminal/endonuclease I, core GO:0003677|GO:0004536 APT55_RS17915 dad20536e4fa0bc89f123634ec8943bd 406 Pfam PF05626 Protein of unknown function (DUF790) 1 403 7.3E-150 T 06-07-2017 IPR008508 Protein of unknown function DUF790, endonuclease-like APT55_RS16770 ccbd62baa06ecd6df8d3f84add3a5b5f 253 Pfam PF08239 Bacterial SH3 domain 66 110 3.8E-8 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS22760 5795d2ee527bf5d732fe8e62eb4c40a8 217 Pfam PF01730 UreF 35 176 2.7E-47 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APT55_RS22760 5795d2ee527bf5d732fe8e62eb4c40a8 217 PIRSF PIRSF009467 1 217 6.7E-68 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APT55_RS22760 5795d2ee527bf5d732fe8e62eb4c40a8 217 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 217 31.911 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 SUPERFAMILY SSF54368 11 104 4.58E-16 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 Gene3D G3DSA:3.30.590.10 109 440 3.0E-109 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 13 449 1.3E-180 T 06-07-2017 IPR017536 Glutamine synthetase, type III GO:0004356|GO:0006542 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 SMART SM01230 105 362 7.3E-113 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 Pfam PF00120 Glutamine synthetase, catalytic domain 106 448 2.9E-107 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 235 250 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 SUPERFAMILY SSF55931 106 450 7.36E-110 T 06-07-2017 APT55_RS08110 b8bbb4b9f6252d000fb0077a4ca14c06 452 Gene3D G3DSA:3.10.20.70 10 107 3.0E-14 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT55_RS25120 a2154f65e40ec1425fdcf097c4fe3280 336 Gene3D G3DSA:3.40.50.1980 50 159 3.8E-18 T 06-07-2017 APT55_RS25120 a2154f65e40ec1425fdcf097c4fe3280 336 Pfam PF01497 Periplasmic binding protein 55 310 1.0E-23 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS25120 a2154f65e40ec1425fdcf097c4fe3280 336 SUPERFAMILY SSF53807 51 334 4.71E-37 T 06-07-2017 APT55_RS25120 a2154f65e40ec1425fdcf097c4fe3280 336 Gene3D G3DSA:3.40.50.1980 160 332 3.2E-20 T 06-07-2017 APT55_RS19965 aa6b2f700c2cb7efe654f719ee7801bd 266 Gene3D G3DSA:2.60.120.330 129 226 1.1E-5 T 06-07-2017 IPR027443 Isopenicillin N synthase-like APT55_RS19965 aa6b2f700c2cb7efe654f719ee7801bd 266 SUPERFAMILY SSF51197 125 224 4.39E-10 T 06-07-2017 APT55_RS19965 aa6b2f700c2cb7efe654f719ee7801bd 266 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 22 208 4.2E-18 T 06-07-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 Pfam PF01494 FAD binding domain 349 409 3.9E-6 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 Pfam PF01494 FAD binding domain 15 197 1.7E-14 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 Gene3D G3DSA:3.50.50.60 345 382 1.6E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 Gene3D G3DSA:3.50.50.60 14 205 1.6E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 362 378 4.5E-16 T 06-07-2017 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 4.5E-16 T 06-07-2017 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 347 362 4.5E-16 T 06-07-2017 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 396 412 4.5E-16 T 06-07-2017 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 SUPERFAMILY SSF51905 15 199 3.31E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS03200 e5042f93d1323945a9e2fbeda5547977 495 SUPERFAMILY SSF51905 342 433 3.31E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10625 18fe5d7fdc3745ee28d90325f4942dab 389 SUPERFAMILY SSF53756 21 377 1.81E-59 T 06-07-2017 APT55_RS10625 18fe5d7fdc3745ee28d90325f4942dab 389 Pfam PF13439 Glycosyltransferase Family 4 76 180 5.3E-9 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS10625 18fe5d7fdc3745ee28d90325f4942dab 389 Gene3D G3DSA:3.40.50.2000 172 355 1.6E-24 T 06-07-2017 APT55_RS10625 18fe5d7fdc3745ee28d90325f4942dab 389 Pfam PF00534 Glycosyl transferases group 1 192 354 2.3E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS08510 0e1e0621ab18be21003062aa72981a19 189 Pfam PF14015 Protein of unknown function (DUF4231) 40 145 1.7E-25 T 06-07-2017 IPR025325 Protein of unknown function DUF4231 APT55_RS24495 d14a556e804b6d686860bf7103b92dde 438 Gene3D G3DSA:3.40.50.300 33 120 6.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24495 d14a556e804b6d686860bf7103b92dde 438 Gene3D G3DSA:3.40.50.300 212 284 6.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24495 d14a556e804b6d686860bf7103b92dde 438 Pfam PF10923 P-loop Domain of unknown function (DUF2791) 8 418 2.6E-154 T 06-07-2017 IPR021228 Protein of unknown function DUF2791 APT55_RS24495 d14a556e804b6d686860bf7103b92dde 438 SUPERFAMILY SSF52540 214 281 1.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24495 d14a556e804b6d686860bf7103b92dde 438 SUPERFAMILY SSF52540 32 114 1.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 135 156 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 6 25 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 36 56 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 207 225 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 77 98 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 PRINTS PR00251 Bacterial opsin signature 175 193 7.0E-24 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 ProSitePatterns PS00950 Bacterial rhodopsins signature 1. 79 91 - T 06-07-2017 IPR018229 Rhodopsin, retinal binding site GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 SMART SM01021 4 243 1.2E-56 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 Gene3D G3DSA:1.20.1070.10 2 240 5.0E-48 T 06-07-2017 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 SUPERFAMILY SSF81321 1 232 1.21E-43 T 06-07-2017 APT55_RS14230 62f8af7f5a3cb435c45b6806713cee7e 274 Pfam PF01036 Bacteriorhodopsin-like protein 6 233 3.1E-32 T 06-07-2017 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 SMART SM00387 363 475 6.7E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 SMART SM00388 251 317 4.9E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 Pfam PF10069 Sensory domain in DIguanylate Cyclases and Two-component system 9 141 1.2E-27 T 06-07-2017 IPR019278 DICT domain APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 Gene3D G3DSA:1.10.287.130 244 311 4.4E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 3.4E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 472 3.9E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 315 1.4E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 Gene3D G3DSA:3.30.565.10 325 473 1.6E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 SUPERFAMILY SSF55874 307 475 3.67E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28045 c0a26962a1b8c78a7208ceee82991a6f 480 SUPERFAMILY SSF47384 235 315 1.96E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS19335 391a310e34414fa37ac46829e938f7ce 395 Gene3D G3DSA:3.40.50.2300 178 324 1.8E-37 T 06-07-2017 APT55_RS19335 391a310e34414fa37ac46829e938f7ce 395 Gene3D G3DSA:3.40.50.2300 50 177 4.8E-27 T 06-07-2017 APT55_RS19335 391a310e34414fa37ac46829e938f7ce 395 Pfam PF02608 Basic membrane protein 55 342 2.6E-36 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT55_RS11215 96db172678ad3baf313cab9e35f9e610 64 Pfam PF10047 Protein of unknown function (DUF2281) 6 35 2.7E-6 T 06-07-2017 IPR018739 Domain of unknown function DUF2281 APT55_RS24630 5ec3d19be7ffd9bf0d747414e0f96556 197 Pfam PF05685 Putative restriction endonuclease 11 187 2.6E-29 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS24630 5ec3d19be7ffd9bf0d747414e0f96556 197 Gene3D G3DSA:3.90.1570.10 4 192 5.0E-21 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS24630 5ec3d19be7ffd9bf0d747414e0f96556 197 SUPERFAMILY SSF52980 10 188 3.0E-22 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16865 37a5a8b903094f0fdaa274e04a8881a4 180 SUPERFAMILY SSF81536 26 158 6.28E-51 T 06-07-2017 IPR003666 Photosystem I PsaF, reaction centre subunit III GO:0009522|GO:0009538|GO:0015979 APT55_RS16865 37a5a8b903094f0fdaa274e04a8881a4 180 Pfam PF02507 Photosystem I reaction centre subunit III 47 151 1.3E-44 T 06-07-2017 IPR003666 Photosystem I PsaF, reaction centre subunit III GO:0009522|GO:0009538|GO:0015979 APT55_RS16865 37a5a8b903094f0fdaa274e04a8881a4 180 Gene3D G3DSA:1.10.8.110 27 158 6.9E-52 T 06-07-2017 IPR003666 Photosystem I PsaF, reaction centre subunit III GO:0009522|GO:0009538|GO:0015979 APT55_RS04690 a265d8fb012b8fba7c69cbb9bf741b5b 218 SUPERFAMILY SSF53271 12 214 3.24E-35 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS04690 a265d8fb012b8fba7c69cbb9bf741b5b 218 Pfam PF00156 Phosphoribosyl transferase domain 17 198 7.8E-17 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS04690 a265d8fb012b8fba7c69cbb9bf741b5b 218 Gene3D G3DSA:3.40.50.2020 104 208 2.8E-22 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS04690 a265d8fb012b8fba7c69cbb9bf741b5b 218 Gene3D G3DSA:3.40.50.2020 13 72 2.8E-22 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 SUPERFAMILY SSF48208 309 755 9.72E-47 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 SUPERFAMILY SSF81296 199 307 8.4E-8 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 Gene3D G3DSA:2.60.40.10 198 308 1.9E-13 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 Pfam PF02927 Cellulase N-terminal ig-like domain 201 298 1.4E-11 T 06-07-2017 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 Gene3D G3DSA:1.50.10.10 310 755 4.3E-49 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS26120 79705fb6b2bdaf18587d9adf6dbced94 789 Pfam PF00759 Glycosyl hydrolase family 9 313 732 7.1E-24 T 06-07-2017 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 APT55_RS22175 f857ad0a145b02ce1453b4a47fbdd066 91 Pfam PF04226 Transglycosylase associated protein 33 84 1.0E-7 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Pfam PF00005 ABC transporter 17 189 5.1E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Pfam PF00005 ABC transporter 345 472 8.5E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Pfam PF12848 ABC transporter 228 312 9.7E-29 T 06-07-2017 IPR032781 ABC-transporter extension domain APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Gene3D G3DSA:3.40.50.300 327 567 4.1E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Gene3D G3DSA:3.40.50.300 122 276 2.1E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 Gene3D G3DSA:3.40.50.300 1 88 2.1E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 ProSitePatterns PS00211 ABC transporters family signature. 444 458 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 SUPERFAMILY SSF52540 2 235 2.23E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 SMART SM00382 26 234 8.0E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 SMART SM00382 349 533 6.0E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08765 840bf27700fa3f2a7c499f2c50bd4c53 572 SUPERFAMILY SSF52540 301 527 2.75E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00965 46e24d450832766298f835c164d1bf2f 78 Gene3D G3DSA:3.60.40.10 16 65 5.7E-4 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS23885 9038437f2b52adcd2cd1c630efca5b0b 199 SUPERFAMILY SSF54523 21 115 2.28E-13 T 06-07-2017 APT55_RS23885 9038437f2b52adcd2cd1c630efca5b0b 199 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 20 41 2.1E-6 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23885 9038437f2b52adcd2cd1c630efca5b0b 199 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 18 40 3.0E-6 T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS23885 9038437f2b52adcd2cd1c630efca5b0b 199 Gene3D G3DSA:3.30.700.10 21 74 5.4E-8 T 06-07-2017 APT55_RS18200 7be99930d68e8d258d29fc86a2beac81 201 Gene3D G3DSA:3.40.50.1010 31 185 1.8E-44 T 06-07-2017 IPR029060 PIN domain-like APT55_RS18200 7be99930d68e8d258d29fc86a2beac81 201 Pfam PF01936 NYN domain 35 182 2.5E-33 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS01310 e0126b77137cc48e0104ab3d1e48935c 623 SMART SM00332 237 521 5.3E-10 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS01310 e0126b77137cc48e0104ab3d1e48935c 623 Gene3D G3DSA:3.60.40.10 245 522 2.8E-47 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS01310 e0126b77137cc48e0104ab3d1e48935c 623 SMART SM00331 261 523 7.4E-8 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS01310 e0126b77137cc48e0104ab3d1e48935c 623 Pfam PF13672 Protein phosphatase 2C 257 490 9.2E-11 T 06-07-2017 APT55_RS01310 e0126b77137cc48e0104ab3d1e48935c 623 SUPERFAMILY SSF81606 246 521 7.59E-43 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 220 234 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 Gene3D G3DSA:3.30.540.10 10 159 2.6E-36 T 06-07-2017 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 SUPERFAMILY SSF56655 11 270 9.29E-64 T 06-07-2017 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.7E-11 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 217 241 2.7E-11 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 2.7E-11 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 Gene3D G3DSA:3.40.190.80 160 274 4.0E-32 T 06-07-2017 APT55_RS05590 39571c6df65bcc1887a766f07f4c84a0 282 Pfam PF00459 Inositol monophosphatase family 13 271 1.1E-54 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS11625 47e88994d4192524d848900dd4574967 401 Gene3D G3DSA:3.40.640.10 17 247 1.7E-86 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS11625 47e88994d4192524d848900dd4574967 401 Pfam PF00266 Aminotransferase class-V 5 365 7.0E-92 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS11625 47e88994d4192524d848900dd4574967 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 193 212 - T 06-07-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT55_RS11625 47e88994d4192524d848900dd4574967 401 SUPERFAMILY SSF53383 4 375 4.6E-106 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS11625 47e88994d4192524d848900dd4574967 401 Gene3D G3DSA:3.90.1150.10 248 372 1.1E-47 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS11625 47e88994d4192524d848900dd4574967 401 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 5 382 1.3E-185 T 06-07-2017 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 APT55_RS11625 47e88994d4192524d848900dd4574967 401 PIRSF PIRSF005572 2 380 3.3E-132 T 06-07-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 APT55_RS01795 4334892c8a9f1db7841b658b9b9f4734 311 SUPERFAMILY SSF56601 18 306 1.82E-29 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS01795 4334892c8a9f1db7841b658b9b9f4734 311 Gene3D G3DSA:3.40.710.10 101 309 2.4E-27 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS01795 4334892c8a9f1db7841b658b9b9f4734 311 Pfam PF13354 Beta-lactamase enzyme family 100 283 7.5E-11 T 06-07-2017 APT55_RS24855 c81c5299d87877b9b1c2293b4d6d729c 261 Gene3D G3DSA:3.40.630.40 3 256 5.4E-65 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS24855 c81c5299d87877b9b1c2293b4d6d729c 261 Pfam PF05013 N-formylglutamate amidohydrolase 16 222 4.4E-53 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase APT55_RS24855 c81c5299d87877b9b1c2293b4d6d729c 261 SUPERFAMILY SSF53187 5 227 1.38E-58 T 06-07-2017 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Gene3D G3DSA:3.30.450.20 137 259 1.0E-15 T 06-07-2017 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SMART SM00388 424 492 5.4E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SUPERFAMILY SSF52172 6 145 1.99E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SMART SM00086 376 418 0.0025 T 06-07-2017 IPR001610 PAC motif APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Pfam PF13426 PAS domain 169 231 1.8 T 06-07-2017 IPR000014 PAS domain APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SUPERFAMILY SSF47384 414 493 3.73E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Pfam PF00512 His Kinase A (phospho-acceptor) domain 424 491 3.7E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SMART SM00448 6 123 2.9E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SUPERFAMILY SSF55785 169 269 6.28E-10 T 06-07-2017 IPR000014 PAS domain APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Pfam PF08447 PAS fold 327 412 3.0E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Gene3D G3DSA:1.10.287.130 417 488 6.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SUPERFAMILY SSF55785 311 418 2.97E-26 T 06-07-2017 IPR000014 PAS domain APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 303 423 2.4E-17 T 06-07-2017 IPR000014 PAS domain APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 SMART SM00091 304 370 1.6E-13 T 06-07-2017 IPR000014 PAS domain APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Pfam PF00072 Response regulator receiver domain 8 123 6.7E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Gene3D G3DSA:3.40.50.2300 7 136 3.2E-31 T 06-07-2017 APT55_RS09980 555760190e79537dfc8eee4e9bb48d14 529 Gene3D G3DSA:3.30.450.20 302 416 4.4E-28 T 06-07-2017 APT55_RS28595 b5075d7420aa7a0cfe1931109fbbf20b 222 Gene3D G3DSA:3.40.50.720 30 182 7.8E-17 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28595 b5075d7420aa7a0cfe1931109fbbf20b 222 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 30 170 1.5E-7 T 06-07-2017 APT55_RS28595 b5075d7420aa7a0cfe1931109fbbf20b 222 SUPERFAMILY SSF51735 30 181 8.18E-17 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 7 298 7.2E-92 T 06-07-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 1 302 45.14 T 06-07-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 Pfam PF13484 4Fe-4S double cluster binding domain 180 242 5.1E-20 T 06-07-2017 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 Pfam PF08331 Domain of unknown function (DUF1730) 56 128 9.1E-22 T 06-07-2017 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 SUPERFAMILY SSF46548 127 243 1.57E-16 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 Gene3D G3DSA:3.30.70.20 178 250 9.1E-9 T 06-07-2017 APT55_RS01870 51ed2f59d06a42c24e8e63c985e4fe6d 303 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 181 192 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 SUPERFAMILY SSF52540 34 272 7.64E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 SUPERFAMILY SSF50331 265 393 3.64E-12 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 Pfam PF08402 TOBE domain 312 394 4.5E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 Gene3D G3DSA:3.40.50.300 33 264 9.3E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 SMART SM00382 57 240 1.3E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS14335 5905da73fc7fcd2096f4a85767d08ed1 396 Pfam PF00005 ABC transporter 49 190 5.9E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SUPERFAMILY SSF55785 67 189 8.19E-16 T 06-07-2017 IPR000014 PAS domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 281 3.8E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Gene3D G3DSA:3.30.565.10 291 438 2.8E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SMART SM00387 328 440 9.9E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 74 198 1.4E-12 T 06-07-2017 IPR000014 PAS domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Gene3D G3DSA:1.10.287.130 210 278 2.5E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SMART SM00091 77 143 1.7E-5 T 06-07-2017 IPR000014 PAS domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 393 6.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 6.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 6.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 379 6.2E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SUPERFAMILY SSF47384 204 283 1.33E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 438 3.6E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Pfam PF00989 PAS fold 78 188 7.2E-8 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SUPERFAMILY SSF55874 272 438 1.09E-46 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 SMART SM00388 214 282 3.6E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS11265 f31856b45cc2f69e16add9e6f74e5748 443 Gene3D G3DSA:3.30.450.20 68 189 5.5E-15 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Pfam PF01433 Peptidase family M1 33 397 2.8E-83 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SUPERFAMILY SSF48371 485 493 1.73E-21 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SUPERFAMILY SSF48371 548 838 1.73E-21 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Pfam PF13646 HEAT repeats 728 809 2.5E-8 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Pfam PF13646 HEAT repeats 578 660 6.3E-15 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SUPERFAMILY SSF55486 222 462 2.93E-68 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 198 213 1.6E-13 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 151 166 1.6E-13 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 308 323 1.6E-13 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 327 339 1.6E-13 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 275 285 1.6E-13 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 590 619 0.0073 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 558 587 0.49 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 729 761 490.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 696 726 700.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 621 650 30.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SMART SM00567 E-Z type HEAT repeats 767 796 34.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 SUPERFAMILY SSF63737 22 215 9.02E-48 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Gene3D G3DSA:1.10.390.10 322 463 2.0E-25 T 06-07-2017 APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Gene3D G3DSA:1.25.10.10 550 669 1.7E-19 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS10485 4a45088100bde6a54bb946cf30e71072 851 Gene3D G3DSA:1.25.10.10 670 810 1.0E-7 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 Pfam PF00702 haloacid dehalogenase-like hydrolase 6 198 1.2E-7 T 06-07-2017 APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 SUPERFAMILY SSF56784 6 248 6.46E-27 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 Gene3D G3DSA:3.40.50.1000 110 248 3.5E-18 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 Gene3D G3DSA:3.40.50.1000 2 23 3.5E-18 T 06-07-2017 IPR023214 HAD-like domain APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 TIGRFAM TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family 6 199 1.0E-66 T 06-07-2017 IPR006438 HAD hydrolase, TIGR01548 family KEGG: 00340+4.2.1.19 APT55_RS23905 46b8be3e358a2184c06da44921543cac 259 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 123 199 3.9E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS05265 fb2083bee0706282d148723a635a42f9 185 SUPERFAMILY SSF141571 18 176 2.85E-46 T 06-07-2017 APT55_RS05265 fb2083bee0706282d148723a635a42f9 185 Pfam PF00805 Pentapeptide repeats (8 copies) 134 173 3.1E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05265 fb2083bee0706282d148723a635a42f9 185 Pfam PF00805 Pentapeptide repeats (8 copies) 56 93 3.3E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05265 fb2083bee0706282d148723a635a42f9 185 Pfam PF00805 Pentapeptide repeats (8 copies) 94 132 1.1E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS14150 c7f479e5278a90b66eafd8999d3ff499 454 Pfam PF12899 Alkaline and neutral invertase 14 445 2.5E-211 T 06-07-2017 IPR024746 Glycosyl hydrolase family 100 GO:0033926 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 APT55_RS14150 c7f479e5278a90b66eafd8999d3ff499 454 SUPERFAMILY SSF48208 18 443 1.41E-46 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Gene3D G3DSA:3.90.226.10 311 419 1.2E-60 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Gene3D G3DSA:3.90.226.10 457 537 1.2E-60 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Gene3D G3DSA:3.90.226.10 210 299 5.4E-52 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Gene3D G3DSA:3.90.226.10 27 167 5.4E-52 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 PIRSF PIRSF001217 1 601 2.9E-196 T 06-07-2017 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Pfam PF01343 Peptidase family S49 381 530 2.2E-51 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 Pfam PF01343 Peptidase family S49 131 280 2.2E-29 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 26 592 1.3E-167 T 06-07-2017 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 316 526 2.5E-58 T 06-07-2017 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 SUPERFAMILY SSF52096 36 171 1.61E-21 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 SUPERFAMILY SSF52096 202 272 1.61E-21 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 SUPERFAMILY SSF52096 311 427 7.77E-40 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS22260 ebb481fac0dde2cfff178b7e6c994550 601 SUPERFAMILY SSF52096 456 516 7.77E-40 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS16830 3746f96c3cbd5dca6d70ad54f2720afa 314 Pfam PF05235 CHAD domain 19 261 2.6E-57 T 06-07-2017 IPR007899 CHAD domain APT55_RS16830 3746f96c3cbd5dca6d70ad54f2720afa 314 SMART SM00880 19 295 2.1E-58 T 06-07-2017 IPR007899 CHAD domain APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Pfam PF01131 DNA topoisomerase 140 577 1.4E-117 T 06-07-2017 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 SUPERFAMILY SSF56712 2 587 1.12E-179 T 06-07-2017 IPR023405 DNA topoisomerase, type IA, core domain APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Pfam PF13368 Topoisomerase C-terminal repeat 722 785 3.1E-20 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Pfam PF13368 Topoisomerase C-terminal repeat 660 720 2.6E-15 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Pfam PF13368 Topoisomerase C-terminal repeat 799 850 7.8E-21 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 SMART SM00436 116 204 1.6E-47 T 06-07-2017 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Gene3D G3DSA:2.70.20.10 196 339 1.5E-24 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Gene3D G3DSA:2.70.20.10 343 484 1.0E-31 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 313 327 - T 06-07-2017 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 628 3.2E-240 T 06-07-2017 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 174 192 1.7E-34 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 501 515 1.7E-34 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 90 103 1.7E-34 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.7E-34 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 318 327 1.7E-34 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 SMART SM00493 2 116 5.8E-35 T 06-07-2017 IPR006171 Toprim domain APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Gene3D G3DSA:1.10.460.10 485 582 1.6E-47 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Gene3D G3DSA:1.10.460.10 147 194 1.6E-47 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 SMART SM00437 276 540 1.9E-118 T 06-07-2017 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Hamap MF_00952 DNA topoisomerase 1 [topA]. 2 734 51.835 T 06-07-2017 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Pfam PF01751 Toprim domain 3 125 2.5E-27 T 06-07-2017 IPR006171 Toprim domain APT55_RS15760 10e686cea1ab6446c7cda5fa751a17dd 902 Gene3D G3DSA:3.40.50.140 3 145 1.2E-45 T 06-07-2017 IPR006171 Toprim domain APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 234 315 6.1E-9 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 SUPERFAMILY SSF51161 18 173 2.16E-33 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 Gene3D G3DSA:3.30.190.10 232 315 8.5E-10 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 SUPERFAMILY SSF55239 225 315 1.7E-15 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 125 0.002 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 25 53 4.8E-4 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 SMART SM00961 222 315 1.2E-18 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS07330 b799c3c38cb5f3d8822093471d0b0989 315 Gene3D G3DSA:2.160.10.10 18 193 8.3E-35 T 06-07-2017 APT55_RS00315 cd57910d1733e6ea7fecec08c771281d 259 Pfam PF06912 Protein of unknown function (DUF1275) 25 246 2.1E-26 T 06-07-2017 IPR010699 Protein of unknown function DUF1275 APT55_RS18665 5c75b6148b23f0a0a999269a814d887b 107 SUPERFAMILY SSF103481 6 105 9.29E-9 T 06-07-2017 APT55_RS18665 5c75b6148b23f0a0a999269a814d887b 107 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 23.752 T 06-07-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 APT55_RS18665 5c75b6148b23f0a0a999269a814d887b 107 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 3.8E-48 T 06-07-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 SMART SM00382 391 579 3.0E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 Gene3D G3DSA:1.20.1560.10 13 328 3.1E-35 T 06-07-2017 APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 Pfam PF00005 ABC transporter 383 527 1.2E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 SUPERFAMILY SSF90123 13 335 8.5E-37 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 SUPERFAMILY SSF52540 366 591 7.35E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 Pfam PF00664 ABC transporter transmembrane region 43 299 3.2E-15 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS25110 ea18fb2096baef94590ec86f2bf30531 597 Gene3D G3DSA:3.40.50.300 369 589 4.9E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23370 24fca49ecd3ee5aa45228be21369183f 79 SUPERFAMILY SSF47413 4 56 7.88E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS23370 24fca49ecd3ee5aa45228be21369183f 79 SMART SM00530 7 61 3.8E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS23370 24fca49ecd3ee5aa45228be21369183f 79 Pfam PF01381 Helix-turn-helix 8 56 1.2E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS23370 24fca49ecd3ee5aa45228be21369183f 79 Gene3D G3DSA:1.10.260.40 2 56 3.2E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS26130 e51f766a03dc8c57bc80a6ae8ecdd30b 148 Pfam PF00210 Ferritin-like domain 12 142 4.6E-17 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS26130 e51f766a03dc8c57bc80a6ae8ecdd30b 148 SUPERFAMILY SSF47240 3 141 1.13E-27 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS26130 e51f766a03dc8c57bc80a6ae8ecdd30b 148 Gene3D G3DSA:1.20.1260.10 3 143 9.4E-29 T 06-07-2017 IPR012347 Ferritin-related APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 237 254 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 257 283 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 34 53 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 372 382 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 339 363 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00463 E-class P450 group I signature 382 405 2.9E-21 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 Gene3D G3DSA:1.10.630.10 5 434 1.6E-112 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 375 384 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00385 P450 superfamily signature 382 393 4.7E-8 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00385 P450 superfamily signature 300 311 4.7E-8 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00385 P450 superfamily signature 248 265 4.7E-8 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 PRINTS PR00385 P450 superfamily signature 373 382 4.7E-8 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 SUPERFAMILY SSF48264 5 433 2.75E-108 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS13105 7cd0b11f1b98ab5ca67cfc0a728f4ca5 436 Pfam PF00067 Cytochrome P450 8 428 1.2E-82 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS16935 e5f5f511baaaca51db621517c623d396 373 Gene3D G3DSA:1.10.443.10 188 359 1.8E-24 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS16935 e5f5f511baaaca51db621517c623d396 373 Pfam PF00589 Phage integrase family 190 358 1.2E-10 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS16935 e5f5f511baaaca51db621517c623d396 373 SUPERFAMILY SSF56349 76 360 5.0E-42 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS16935 e5f5f511baaaca51db621517c623d396 373 Gene3D G3DSA:1.10.150.130 76 178 3.4E-6 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS13875 3c532fef0bea70aede8c7de1e700cf67 383 SUPERFAMILY SSF51735 1 370 1.44E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13875 3c532fef0bea70aede8c7de1e700cf67 383 Gene3D G3DSA:3.40.50.720 1 213 5.4E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS13875 3c532fef0bea70aede8c7de1e700cf67 383 Gene3D G3DSA:3.90.25.10 214 375 2.7E-35 T 06-07-2017 APT55_RS13875 3c532fef0bea70aede8c7de1e700cf67 383 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 291 2.8E-23 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS11520 b2f32565690590f2ea4a5bc4963a1c6d 189 SUPERFAMILY SSF82153 25 179 6.8E-38 T 06-07-2017 IPR000782 FAS1 domain APT55_RS11520 b2f32565690590f2ea4a5bc4963a1c6d 189 Gene3D G3DSA:2.30.180.10 48 178 3.6E-37 T 06-07-2017 IPR000782 FAS1 domain APT55_RS11520 b2f32565690590f2ea4a5bc4963a1c6d 189 Pfam PF02469 Fasciclin domain 57 178 7.3E-32 T 06-07-2017 IPR000782 FAS1 domain APT55_RS11520 b2f32565690590f2ea4a5bc4963a1c6d 189 SMART SM00554 82 179 9.5E-29 T 06-07-2017 IPR000782 FAS1 domain APT55_RS23620 a072c02a28c8cd833f12511ee31ebdf0 228 SUPERFAMILY SSF53335 3 209 1.23E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23620 a072c02a28c8cd833f12511ee31ebdf0 228 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 130 226 3.5E-38 T 06-07-2017 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS23620 a072c02a28c8cd833f12511ee31ebdf0 228 Gene3D G3DSA:3.40.50.150 35 208 4.2E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23620 a072c02a28c8cd833f12511ee31ebdf0 228 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 7 223 3.3E-79 T 06-07-2017 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS20875 249476486a296756ab8cffece5319d01 90 Gene3D G3DSA:1.10.1220.10 3 60 5.2E-5 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT55_RS20875 249476486a296756ab8cffece5319d01 90 SUPERFAMILY SSF47598 5 44 2.0E-10 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 APT55_RS20875 249476486a296756ab8cffece5319d01 90 Pfam PF07878 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 7 44 9.4E-8 T 06-07-2017 IPR012869 CopG-like ribbon-helix-helix domain APT55_RS21810 bfc199c60ebdec0e4bf591ae96b1f864 235 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 61 219 1.8E-15 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS21810 bfc199c60ebdec0e4bf591ae96b1f864 235 Gene3D G3DSA:3.40.50.1110 35 228 3.6E-24 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS21810 bfc199c60ebdec0e4bf591ae96b1f864 235 SUPERFAMILY SSF52266 35 228 1.21E-24 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 SUPERFAMILY SSF55620 11 203 2.59E-82 T 06-07-2017 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 81 97 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 Gene3D G3DSA:1.10.286.10 20 71 4.2E-24 T 06-07-2017 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 24 203 8.1E-84 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 Gene3D G3DSA:3.30.1130.10 74 203 3.9E-66 T 06-07-2017 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 129 139 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 20 202 40.919 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS07315 5a0edc5276623b910e19930fdd2934de 208 Pfam PF01227 GTP cyclohydrolase I 25 201 1.7E-77 T 06-07-2017 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 APT55_RS24850 a4d0de63b72629a5214acb3880682c25 298 Pfam PF09084 NMT1/THI5 like 13 230 2.0E-54 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS24850 a4d0de63b72629a5214acb3880682c25 298 Gene3D G3DSA:3.40.190.10 92 212 8.6E-4 T 06-07-2017 APT55_RS24850 a4d0de63b72629a5214acb3880682c25 298 SUPERFAMILY SSF53850 3 236 5.2E-23 T 06-07-2017 APT55_RS25125 514170d6f4c6b2aa9cf996f410e55123 342 Gene3D G3DSA:1.10.3470.10 15 342 2.9E-109 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25125 514170d6f4c6b2aa9cf996f410e55123 342 Pfam PF01032 FecCD transport family 30 338 4.9E-98 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS25125 514170d6f4c6b2aa9cf996f410e55123 342 SUPERFAMILY SSF81345 10 338 1.7E-86 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS10460 db283ba3a807792143630b2b5988a680 246 Gene3D G3DSA:1.25.40.10 26 99 2.2E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SUPERFAMILY SSF48452 22 192 1.39E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SMART SM00028 23 56 6.4E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SMART SM00028 91 124 0.011 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SMART SM00028 159 192 16.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SMART SM00028 57 90 25.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 SMART SM00028 125 158 0.38 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 Gene3D G3DSA:1.25.40.10 100 194 1.6E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 Pfam PF13181 Tetratricopeptide repeat 129 158 0.054 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 Pfam PF13181 Tetratricopeptide repeat 162 190 0.017 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10460 db283ba3a807792143630b2b5988a680 246 Pfam PF13181 Tetratricopeptide repeat 33 56 0.19 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01850 5262272b3b8bfdd7d933198d5c62ee59 505 Gene3D G3DSA:3.40.605.10 4 280 1.2E-21 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 APT55_RS01850 5262272b3b8bfdd7d933198d5c62ee59 505 SUPERFAMILY SSF53720 4 428 6.5E-26 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 APT55_RS01850 5262272b3b8bfdd7d933198d5c62ee59 505 Pfam PF00171 Aldehyde dehydrogenase family 149 300 2.5E-12 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 Gene3D G3DSA:2.40.50.140 4 101 2.0E-19 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 SUPERFAMILY SSF55681 94 460 3.03E-105 T 06-07-2017 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 SUPERFAMILY SSF50249 6 100 2.79E-19 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 462 3.1E-204 T 06-07-2017 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 Pfam PF01336 OB-fold nucleic acid binding domain 18 96 3.7E-13 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 Pfam PF00152 tRNA synthetases class II (D, K and N) 116 456 5.4E-90 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 3 462 46.342 T 06-07-2017 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 PRINTS PR01042 Aspartyl-tRNA synthetase signature 204 216 2.8E-15 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 PRINTS PR01042 Aspartyl-tRNA synthetase signature 220 233 2.8E-15 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 PRINTS PR01042 Aspartyl-tRNA synthetase signature 417 431 2.8E-15 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 PRINTS PR01042 Aspartyl-tRNA synthetase signature 377 393 2.8E-15 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT55_RS10365 db540ced73cb7cd0ffb49517f703dd14 462 Gene3D G3DSA:3.30.930.10 105 459 5.2E-122 T 06-07-2017 APT55_RS00610 0eb133179754e668ef36e0f063dcf09c 644 SUPERFAMILY SSF52540 26 184 1.06E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00610 0eb133179754e668ef36e0f063dcf09c 644 Pfam PF07693 KAP family P-loop domain 12 106 4.0E-10 T 06-07-2017 IPR011646 KAP family P-loop domain APT55_RS00610 0eb133179754e668ef36e0f063dcf09c 644 Gene3D G3DSA:3.40.50.300 8 176 2.8E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18880 ea12888373b81e78bd1bb1c6e757bd72 205 Gene3D G3DSA:3.40.50.2020 23 196 4.2E-47 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS18880 ea12888373b81e78bd1bb1c6e757bd72 205 SUPERFAMILY SSF53271 20 199 7.38E-35 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS18880 ea12888373b81e78bd1bb1c6e757bd72 205 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 205 26.082 T 06-07-2017 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS18880 ea12888373b81e78bd1bb1c6e757bd72 205 Pfam PF00156 Phosphoribosyl transferase domain 108 176 2.4E-7 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS18880 ea12888373b81e78bd1bb1c6e757bd72 205 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 33 196 1.1E-50 T 06-07-2017 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT55_RS13555 511df4227178fd4354a9bc6368c11df3 133 Pfam PF13441 YMGG-like Gly-zipper 89 123 5.3E-7 T 06-07-2017 IPR027367 YMGG-like Gly-zipper APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 TIGRFAM TIGR00608 radc: DNA repair protein RadC 15 233 3.4E-79 T 06-07-2017 IPR001405 RadC protein APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 182 187 - T 06-07-2017 IPR020891 Uncharacterised protein family UPF0758, conserved site APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 Gene3D G3DSA:3.40.140.10 109 230 7.6E-40 T 06-07-2017 APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 SUPERFAMILY SSF102712 155 199 9.68E-5 T 06-07-2017 APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 SUPERFAMILY SSF47781 21 98 7.78E-5 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS04705 16649fdddb1d7496b01798e0abe2a9b5 241 Pfam PF04002 RadC-like JAB domain 113 229 2.5E-38 T 06-07-2017 IPR025657 RadC-like JAB domain APT55_RS22820 88ed1c8197cb465666d9e9afa2531790 113 Pfam PF01934 Protein of unknown function DUF86 11 102 1.3E-26 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS22820 88ed1c8197cb465666d9e9afa2531790 113 Gene3D G3DSA:1.20.120.580 66 110 2.2E-8 T 06-07-2017 APT55_RS30855 2ea090c7dba8c9f5db2137bbf410542d 110 Gene3D G3DSA:3.40.50.2300 1 104 1.1E-35 T 06-07-2017 APT55_RS30855 2ea090c7dba8c9f5db2137bbf410542d 110 SUPERFAMILY SSF52172 1 104 1.71E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS30855 2ea090c7dba8c9f5db2137bbf410542d 110 Pfam PF00072 Response regulator receiver domain 4 104 1.4E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS30855 2ea090c7dba8c9f5db2137bbf410542d 110 SMART SM00448 2 110 3.2E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 Pfam PF01471 Putative peptidoglycan binding domain 149 204 5.2E-19 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 Pfam PF01471 Putative peptidoglycan binding domain 53 109 1.9E-19 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 SUPERFAMILY SSF47090 44 110 2.83E-22 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 SUPERFAMILY SSF47090 138 204 8.11E-21 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 Gene3D G3DSA:1.10.101.10 136 204 1.9E-24 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS08935 96912c658a2838bd8f674f6409b1f850 206 Gene3D G3DSA:1.10.101.10 44 110 4.4E-24 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS28750 7b576d3fe2400495b3e2ed82995eae6c 134 Gene3D G3DSA:3.10.180.10 1 131 1.9E-45 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS28750 7b576d3fe2400495b3e2ed82995eae6c 134 SUPERFAMILY SSF54593 5 129 1.32E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS28750 7b576d3fe2400495b3e2ed82995eae6c 134 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 123 1.0E-13 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 SMART SM00382 771 957 5.6E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Pfam PF00005 ABC transporter 762 911 6.9E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 ProSitePatterns PS00211 ABC transporters family signature. 883 897 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 SUPERFAMILY SSF90123 411 730 2.88E-64 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Pfam PF03412 Peptidase C39 family 275 401 5.2E-43 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Pfam PF00664 ABC transporter transmembrane region 431 697 6.3E-42 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 SUPERFAMILY SSF52540 733 981 6.96E-91 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Gene3D G3DSA:1.20.1560.10 416 730 1.3E-77 T 06-07-2017 APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Gene3D G3DSA:3.40.50.300 744 975 1.3E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03935 86e9afeab64c813c29b22bb9756e8174 984 Gene3D G3DSA:3.90.70.10 280 401 3.5E-30 T 06-07-2017 APT55_RS10565 cf961639fa8dc5e8bd6ab3409c19689f 348 Pfam PF02685 Glucokinase 5 346 9.8E-110 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 APT55_RS10565 cf961639fa8dc5e8bd6ab3409c19689f 348 SUPERFAMILY SSF53067 1 347 4.75E-52 T 06-07-2017 APT55_RS10565 cf961639fa8dc5e8bd6ab3409c19689f 348 TIGRFAM TIGR00749 glk: glucokinase 5 342 8.2E-105 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 APT55_RS10565 cf961639fa8dc5e8bd6ab3409c19689f 348 Gene3D G3DSA:3.40.367.20 111 331 2.3E-72 T 06-07-2017 APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 SUPERFAMILY SSF55920 7 251 1.01E-89 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 Gene3D G3DSA:3.90.230.10 9 252 4.3E-97 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 6 252 4.8E-104 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 Pfam PF00557 Metallopeptidase family M24 15 243 2.3E-55 T 06-07-2017 IPR000994 Peptidase M24, structural domain APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 Hamap MF_01974 Methionine aminopeptidase [map]. 6 253 41.831 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 170 188 - T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 195 207 2.7E-23 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 164 176 2.7E-23 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 94 110 2.7E-23 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS05000 da4c32c5fad066d9c88a78d72dc90363 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 71 84 2.7E-23 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 SMART SM00861 391 579 0.002 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 Gene3D G3DSA:3.40.50.970 386 592 9.1E-11 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 SUPERFAMILY SSF52518 55 336 1.02E-35 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 435 561 3.7E-14 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 Gene3D G3DSA:3.40.50.920 593 734 6.8E-7 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 SUPERFAMILY SSF52518 373 579 5.18E-31 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 SUPERFAMILY SSF52922 585 733 9.03E-9 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 Pfam PF09364 XFP N-terminal domain 102 267 9.0E-9 T 06-07-2017 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 PIRSF PIRSF017245 3 736 3.9E-179 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT55_RS17305 5bd17792d93201d508ecba5e392c8917 736 Gene3D G3DSA:3.40.50.970 58 346 1.6E-40 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS23600 eff68ebf98c6ca3d4ad72a56c707ecc0 361 Pfam PF00534 Glycosyl transferases group 1 163 307 3.1E-22 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS23600 eff68ebf98c6ca3d4ad72a56c707ecc0 361 Gene3D G3DSA:3.40.50.2000 170 302 1.2E-15 T 06-07-2017 APT55_RS23600 eff68ebf98c6ca3d4ad72a56c707ecc0 361 SUPERFAMILY SSF53756 10 341 2.88E-63 T 06-07-2017 APT55_RS23600 eff68ebf98c6ca3d4ad72a56c707ecc0 361 Pfam PF13439 Glycosyltransferase Family 4 18 147 5.0E-16 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS00955 4538ed9e30075dc2237eb273bcafef47 188 Gene3D G3DSA:2.60.200.20 37 124 5.9E-9 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS00955 4538ed9e30075dc2237eb273bcafef47 188 SUPERFAMILY SSF49879 37 125 8.8E-11 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS00955 4538ed9e30075dc2237eb273bcafef47 188 Pfam PF00498 FHA domain 43 116 4.7E-6 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21340 57447a464dafb2081f694ce721b3c0de 241 SMART SM00331 10 240 1.2E-46 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS21340 57447a464dafb2081f694ce721b3c0de 241 Gene3D G3DSA:3.60.40.10 6 240 4.9E-69 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS21340 57447a464dafb2081f694ce721b3c0de 241 SUPERFAMILY SSF81606 6 240 6.54E-64 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS21340 57447a464dafb2081f694ce721b3c0de 241 SMART SM00332 1 238 1.4E-30 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 APT55_RS21340 57447a464dafb2081f694ce721b3c0de 241 Pfam PF13672 Protein phosphatase 2C 17 201 6.2E-22 T 06-07-2017 APT55_RS07075 24e241d0d68d7bbe7fd9388f3ca2e051 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 274 1.4E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07075 24e241d0d68d7bbe7fd9388f3ca2e051 284 SUPERFAMILY SSF161098 84 270 3.92E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07075 24e241d0d68d7bbe7fd9388f3ca2e051 284 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 73 272 3.5E-64 T 06-07-2017 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT55_RS07075 24e241d0d68d7bbe7fd9388f3ca2e051 284 Gene3D G3DSA:1.10.3720.10 82 273 8.2E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS03670 5fe84d4b01ebff5161fe3ef8dff03591 94 Gene3D G3DSA:1.20.1290.10 1 89 3.2E-35 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT55_RS03670 5fe84d4b01ebff5161fe3ef8dff03591 94 Pfam PF02627 Carboxymuconolactone decarboxylase family 7 80 4.7E-21 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT55_RS03670 5fe84d4b01ebff5161fe3ef8dff03591 94 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 15 63 1.7E-14 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT55_RS03670 5fe84d4b01ebff5161fe3ef8dff03591 94 SUPERFAMILY SSF69118 2 84 8.24E-27 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT55_RS10295 1296987582bdb1868f58ec0b775bf544 100 SUPERFAMILY SSF46689 38 88 1.09E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS15100 e36d0f34239a38511add71eaaf8c7a26 334 Gene3D G3DSA:1.10.3720.10 89 162 2.0E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15100 e36d0f34239a38511add71eaaf8c7a26 334 Gene3D G3DSA:1.10.3720.10 199 326 2.0E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15100 e36d0f34239a38511add71eaaf8c7a26 334 SUPERFAMILY SSF161098 94 159 1.57E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15100 e36d0f34239a38511add71eaaf8c7a26 334 SUPERFAMILY SSF161098 196 318 1.57E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15100 e36d0f34239a38511add71eaaf8c7a26 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 333 7.3E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 287 303 3.3E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 287 3.3E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 Gene3D G3DSA:1.10.10.60 201 258 1.9E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 Pfam PF12833 Helix-turn-helix domain 226 304 3.4E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 205 249 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 SUPERFAMILY SSF46689 204 253 2.11E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 SMART SM00342 220 303 3.1E-31 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 Gene3D G3DSA:1.10.10.60 259 304 6.2E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 SUPERFAMILY SSF46689 257 304 4.93E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS08000 86edd36d75221bbfad3e8f6ad2b6173b 305 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 257 299 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT55_RS25270 828ffea4874a4b26cc55f0c84d590414 65 Gene3D G3DSA:1.10.287.670 1 64 4.8E-33 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS25270 828ffea4874a4b26cc55f0c84d590414 65 Pfam PF04485 Phycobilisome degradation protein nblA 6 55 5.7E-25 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS25270 828ffea4874a4b26cc55f0c84d590414 65 SUPERFAMILY SSF109859 5 56 1.44E-16 T 06-07-2017 IPR007574 Phycobilisome degradation protein NblA APT55_RS22825 e10c6c2886ad04eddf488020043abec8 102 SUPERFAMILY SSF81301 5 102 5.54E-19 T 06-07-2017 APT55_RS22825 e10c6c2886ad04eddf488020043abec8 102 Gene3D G3DSA:3.30.460.10 10 102 4.3E-23 T 06-07-2017 APT55_RS22825 e10c6c2886ad04eddf488020043abec8 102 Pfam PF01909 Nucleotidyltransferase domain 29 101 4.5E-10 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 SUPERFAMILY SSF53850 31 530 1.18E-106 T 06-07-2017 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 PIRSF PIRSF002741 2 529 4.1E-82 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 Gene3D G3DSA:3.40.190.10 195 293 2.1E-23 T 06-07-2017 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 Gene3D G3DSA:3.10.105.10 294 504 8.4E-47 T 06-07-2017 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 Gene3D G3DSA:3.90.76.10 45 194 3.1E-32 T 06-07-2017 APT55_RS00260 4ecd72304f8d0a6d38d377290bae51ca 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 441 4.7E-70 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain APT55_RS12880 a194e848d6a887bd791c5e3cbe5672eb 319 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 205 301 9.1E-31 T 06-07-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 APT55_RS12880 a194e848d6a887bd791c5e3cbe5672eb 319 SUPERFAMILY SSF63848 203 296 9.94E-29 T 06-07-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 APT55_RS12880 a194e848d6a887bd791c5e3cbe5672eb 319 Gene3D G3DSA:2.160.20.70 194 305 4.5E-33 T 06-07-2017 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 APT55_RS12880 a194e848d6a887bd791c5e3cbe5672eb 319 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 80 308 17.686 T 06-07-2017 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 APT55_RS04675 00bb324a51ee3c32152dd3f0cc6b4ffa 85 SUPERFAMILY SSF143011 6 76 1.96E-7 T 06-07-2017 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Pfam PF00005 ABC transporter 502 651 3.7E-37 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 SUPERFAMILY SSF90123 154 465 1.57E-56 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Pfam PF03412 Peptidase C39 family 12 139 1.0E-34 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 SMART SM00382 511 697 2.1E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Gene3D G3DSA:3.40.50.300 483 716 2.1E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Gene3D G3DSA:3.90.70.10 18 139 2.6E-21 T 06-07-2017 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 ProSitePatterns PS00211 ABC transporters family signature. 623 637 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 SUPERFAMILY SSF52540 474 721 2.09E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Gene3D G3DSA:1.20.1560.10 155 464 5.6E-62 T 06-07-2017 APT55_RS31860 8547af3935ed6acd299b1ea122e0e872 725 Pfam PF00664 ABC transporter transmembrane region 169 435 3.2E-27 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS20975 2c2698ee2f12389f29f33bde03f50322 272 SUPERFAMILY SSF54427 43 124 4.54E-6 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS21765 6f9ef47cc102cf1ac1ec06c382ed619b 341 SUPERFAMILY SSF161098 204 328 5.67E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS21765 6f9ef47cc102cf1ac1ec06c382ed619b 341 SUPERFAMILY SSF161098 96 166 5.67E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS21765 6f9ef47cc102cf1ac1ec06c382ed619b 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 341 1.6E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS21765 6f9ef47cc102cf1ac1ec06c382ed619b 341 Gene3D G3DSA:1.10.3720.10 207 337 2.5E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS21765 6f9ef47cc102cf1ac1ec06c382ed619b 341 Gene3D G3DSA:1.10.3720.10 98 169 2.5E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18045 6f3b159c2b25fa3ee21914bd40dcff72 360 SUPERFAMILY SSF53756 12 292 2.13E-7 T 06-07-2017 APT55_RS17455 7f045fbaef7c4dad8b012716a13b5ec8 435 PIRSF PIRSF006060 1 432 3.0E-77 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS17455 7f045fbaef7c4dad8b012716a13b5ec8 435 Pfam PF13520 Amino acid permease 14 403 1.6E-41 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS19130 1e00b02ed319d28b0a219cf218587ff2 917 Pfam PF07705 CARDB 604 725 1.4E-6 T 06-07-2017 IPR011635 CARDB domain APT55_RS19130 1e00b02ed319d28b0a219cf218587ff2 917 Gene3D G3DSA:2.60.120.380 15 109 6.1E-7 T 06-07-2017 APT55_RS19130 1e00b02ed319d28b0a219cf218587ff2 917 Gene3D G3DSA:2.130.10.130 255 450 8.4E-8 T 06-07-2017 APT55_RS19130 1e00b02ed319d28b0a219cf218587ff2 917 Gene3D G3DSA:2.130.10.130 154 228 1.2E-4 T 06-07-2017 APT55_RS19130 1e00b02ed319d28b0a219cf218587ff2 917 SUPERFAMILY SSF69318 159 458 2.09E-21 T 06-07-2017 APT55_RS01545 46277401fb2a3cf6c3048e450e80fb51 129 SUPERFAMILY SSF54909 5 96 7.72E-8 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS01545 46277401fb2a3cf6c3048e450e80fb51 129 Pfam PF11695 Domain of unknown function (DUF3291) 31 105 2.9E-6 T 06-07-2017 IPR021708 Domain of unknown function DUF3291 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Gene3D G3DSA:1.10.10.10 258 326 7.6E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 SUPERFAMILY SSF88946 16 167 2.98E-55 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Pfam PF04539 Sigma-70 region 3 176 250 3.4E-29 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Gene3D G3DSA:1.10.10.10 167 220 1.3E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Pfam PF04542 Sigma-70 region 2 97 166 3.8E-22 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family 19 316 2.2E-140 T 06-07-2017 IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Pfam PF00140 Sigma-70 factor, region 1.2 19 50 1.2E-11 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Gene3D G3DSA:1.10.601.10 89 166 1.6E-60 T 06-07-2017 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Gene3D G3DSA:1.10.601.10 8 51 1.6E-60 T 06-07-2017 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 PRINTS PR00046 Major sigma-70 factor signature 268 280 3.7E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 PRINTS PR00046 Major sigma-70 factor signature 289 304 3.7E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 PRINTS PR00046 Major sigma-70 factor signature 121 134 3.7E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 PRINTS PR00046 Major sigma-70 factor signature 304 315 3.7E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 PRINTS PR00046 Major sigma-70 factor signature 145 153 3.7E-21 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 SUPERFAMILY SSF88659 170 244 3.92E-19 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 121 134 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 318 3.6E-36 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 SUPERFAMILY SSF88659 228 320 1.85E-23 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS04265 bffec8a673a53944bfbe2fa4d2047335 328 Pfam PF04545 Sigma-70, region 4 265 317 1.7E-17 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS14125 8ba0fa4396c0b194e146d9e0a18a4a5d 427 TIGRFAM TIGR00341 TIGR00341: TIGR00341 family protein 15 309 9.6E-29 T 06-07-2017 APT55_RS14125 8ba0fa4396c0b194e146d9e0a18a4a5d 427 Pfam PF04087 Domain of unknown function (DUF389) 141 279 9.4E-26 T 06-07-2017 IPR005240 Protein of unknown function DUF389 APT55_RS08815 b8883b04c6f4a4789dc84d7bcbf0d92c 153 SUPERFAMILY SSF54593 18 151 1.75E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS08815 b8883b04c6f4a4789dc84d7bcbf0d92c 153 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 19 147 3.2E-11 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS08815 b8883b04c6f4a4789dc84d7bcbf0d92c 153 Gene3D G3DSA:3.10.180.10 17 150 6.3E-25 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 SUPERFAMILY SSF51905 5 317 7.34E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 SUPERFAMILY SSF51905 419 459 7.34E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 PRINTS PR00419 Adrenodoxin reductase family signature 9 31 4.2E-5 T 06-07-2017 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 PRINTS PR00419 Adrenodoxin reductase family signature 32 45 4.2E-5 T 06-07-2017 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Gene3D G3DSA:3.50.50.60 157 173 1.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Gene3D G3DSA:3.50.50.60 330 331 1.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Gene3D G3DSA:3.50.50.60 403 458 1.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Gene3D G3DSA:3.50.50.60 6 92 1.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Gene3D G3DSA:3.50.50.60 211 284 1.3E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25395 b99aebfe36a52906687294cc4d0c9c02 502 Pfam PF01593 Flavin containing amine oxidoreductase 18 457 1.8E-25 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 SUPERFAMILY SSF52200 5 145 5.23E-20 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 SMART SM00255 3 150 1.1E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 SUPERFAMILY SSF52540 236 444 5.49E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 Pfam PF13676 TIR domain 6 113 1.4E-18 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 Gene3D G3DSA:3.40.50.300 216 364 1.7E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 Pfam PF05729 NACHT domain 242 392 2.6E-21 T 06-07-2017 APT55_RS15445 0689c0eb632cc6cfa0fac23d5045b501 881 Gene3D G3DSA:3.40.50.10140 6 144 1.1E-12 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS27305 1272aa6cfd87c6b3c03c3ff4cdc701ab 488 Pfam PF03040 CemA family 239 488 1.2E-92 T 06-07-2017 IPR004282 Chloroplast envelope membrane protein, CemA GO:0016021 APT55_RS27305 1272aa6cfd87c6b3c03c3ff4cdc701ab 488 Hamap MF_01308 envelope membrane protein, chloroplastic [cemA]. 238 488 34.535 T 06-07-2017 IPR004282 Chloroplast envelope membrane protein, CemA GO:0016021 APT55_RS14480 f29d921e86500602047165298c0de78c 564 PRINTS PR00419 Adrenodoxin reductase family signature 28 41 2.6E-7 T 06-07-2017 APT55_RS14480 f29d921e86500602047165298c0de78c 564 PRINTS PR00419 Adrenodoxin reductase family signature 5 27 2.6E-7 T 06-07-2017 APT55_RS14480 f29d921e86500602047165298c0de78c 564 PRINTS PR00419 Adrenodoxin reductase family signature 167 181 2.6E-7 T 06-07-2017 APT55_RS14480 f29d921e86500602047165298c0de78c 564 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 53 3.4E-11 T 06-07-2017 APT55_RS14480 f29d921e86500602047165298c0de78c 564 SUPERFAMILY SSF51905 357 411 4.12E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14480 f29d921e86500602047165298c0de78c 564 SUPERFAMILY SSF51905 1 308 4.12E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14480 f29d921e86500602047165298c0de78c 564 Gene3D G3DSA:3.50.50.60 217 308 1.9E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14480 f29d921e86500602047165298c0de78c 564 Gene3D G3DSA:3.50.50.60 1 75 1.9E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 SMART SM00862 151 222 5.2E-24 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 222 5.8E-24 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 SUPERFAMILY SSF52172 2 185 4.53E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 Gene3D G3DSA:3.40.50.2300 1 122 2.7E-35 T 06-07-2017 APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 Gene3D G3DSA:1.10.10.10 129 223 3.6E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 SMART SM00448 2 113 1.4E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13980 a1f84a37294c68824c2dad79416b29cd 224 Pfam PF00072 Response regulator receiver domain 4 114 4.8E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS31030 8d128d21cd55b5d2a12da217837c7c90 339 Pfam PF00805 Pentapeptide repeats (8 copies) 271 306 8.0E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31030 8d128d21cd55b5d2a12da217837c7c90 339 Pfam PF00805 Pentapeptide repeats (8 copies) 198 235 7.8E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31030 8d128d21cd55b5d2a12da217837c7c90 339 Pfam PF00805 Pentapeptide repeats (8 copies) 159 190 2.9E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31030 8d128d21cd55b5d2a12da217837c7c90 339 SUPERFAMILY SSF141571 143 306 1.47E-37 T 06-07-2017 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 Pfam PF00575 S1 RNA binding domain 672 752 7.3E-12 T 06-07-2017 IPR003029 S1 domain GO:0003676 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 Gene3D G3DSA:2.40.50.140 674 752 4.8E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SMART SM00955 245 598 3.5E-125 T 06-07-2017 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SMART SM00357 68 127 1.6E-11 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 ProSitePatterns PS01175 Ribonuclease II family signature. 564 589 - T 06-07-2017 IPR022966 Ribonuclease II/R, conserved site APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SUPERFAMILY SSF50249 51 131 8.58E-15 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SMART SM00316 672 755 2.4E-15 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 64 752 1.6E-140 T 06-07-2017 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SUPERFAMILY SSF50249 674 753 2.31E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 Pfam PF08206 Ribonuclease B OB domain 69 126 1.7E-20 T 06-07-2017 IPR013223 Ribonuclease B, N-terminal OB domain APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 Pfam PF00773 RNB domain 245 596 1.9E-99 T 06-07-2017 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 Hamap MF_01895 Ribonuclease R [rnr]. 21 755 42.899 T 06-07-2017 IPR011805 Ribonuclease R GO:0003723|GO:0004518 APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SUPERFAMILY SSF50249 207 599 8.57E-115 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SUPERFAMILY SSF50249 628 671 8.57E-115 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS17095 2b22aaed83e86d04c2a33c863ef4ce21 788 SUPERFAMILY SSF50249 122 222 6.28E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 Pfam PF00072 Response regulator receiver domain 10 119 1.6E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 226 1.1E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 SMART SM00862 151 226 8.5E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 SUPERFAMILY SSF52172 9 181 6.55E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 Gene3D G3DSA:1.10.10.10 130 228 1.6E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 SMART SM00448 8 119 2.0E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 Gene3D G3DSA:3.40.50.2300 8 124 1.4E-24 T 06-07-2017 APT55_RS16400 ba202f3e84cc9cbd93fdf5b3ae445d1f 229 SUPERFAMILY SSF46894 128 227 2.81E-33 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 65 131 3.0E-22 T 06-07-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 131 3.8E-46 T 06-07-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 SUPERFAMILY SSF54736 59 131 9.94E-23 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 131 26.506 T 06-07-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 53 5.5E-19 T 06-07-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 SUPERFAMILY SSF48300 5 65 2.09E-14 T 06-07-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 Gene3D G3DSA:1.20.5.710 5 50 2.8E-18 T 06-07-2017 APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 Gene3D G3DSA:3.30.1390.10 58 131 1.5E-30 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT55_RS17480 44c000d453359024c4a0f2e2be574199 131 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 64 131 1.1E-26 T 06-07-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24665 92e5ce9ad6318aa30297c4f42b67edcf 37 Pfam PF02529 Cytochrome B6-F complex subunit 5 1 36 1.1E-24 T 06-07-2017 IPR003683 Cytochrome b6/f complex, subunit 5 GO:0009512 APT55_RS24665 92e5ce9ad6318aa30297c4f42b67edcf 37 SUPERFAMILY SSF103446 1 30 1.44E-12 T 06-07-2017 IPR003683 Cytochrome b6/f complex, subunit 5 GO:0009512 APT55_RS24665 92e5ce9ad6318aa30297c4f42b67edcf 37 PIRSF PIRSF000034 1 37 2.2E-24 T 06-07-2017 IPR003683 Cytochrome b6/f complex, subunit 5 GO:0009512 APT55_RS24665 92e5ce9ad6318aa30297c4f42b67edcf 37 Hamap MF_00432 Cytochrome b6-f complex subunit 5 [petG]. 1 36 18.183 T 06-07-2017 IPR003683 Cytochrome b6/f complex, subunit 5 GO:0009512 APT55_RS04680 235733a8226aa743ca27e3ad7e57d9ea 384 SUPERFAMILY SSF53756 2 384 6.28E-67 T 06-07-2017 APT55_RS04680 235733a8226aa743ca27e3ad7e57d9ea 384 Pfam PF13579 Glycosyl transferase 4-like domain 15 183 3.1E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS04680 235733a8226aa743ca27e3ad7e57d9ea 384 Pfam PF00534 Glycosyl transferases group 1 195 360 2.8E-34 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS04680 235733a8226aa743ca27e3ad7e57d9ea 384 Gene3D G3DSA:3.40.50.2000 194 350 1.0E-28 T 06-07-2017 APT55_RS04635 67069da57f2be59d5318c695fb829114 942 Pfam PF13191 AAA ATPase domain 592 740 4.3E-9 T 06-07-2017 APT55_RS04635 67069da57f2be59d5318c695fb829114 942 SUPERFAMILY SSF52540 579 832 1.81E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04635 67069da57f2be59d5318c695fb829114 942 Gene3D G3DSA:3.40.50.300 579 767 5.3E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21445 c0aa456acc50602aeea865adba9f12b1 290 Gene3D G3DSA:1.10.10.60 6 42 3.2E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS10170 61be38ed39efcdfc75d330c617db365b 318 SUPERFAMILY SSF161098 54 307 3.4E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10170 61be38ed39efcdfc75d330c617db365b 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 26 314 1.5E-94 T 06-07-2017 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 APT55_RS10170 61be38ed39efcdfc75d330c617db365b 318 Gene3D G3DSA:1.10.3720.10 48 315 1.2E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10170 61be38ed39efcdfc75d330c617db365b 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 314 2.4E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS09290 0aaf373396680a91a593599fa9a8bc7f 164 Gene3D G3DSA:3.40.50.450 4 157 1.0E-25 T 06-07-2017 APT55_RS09290 0aaf373396680a91a593599fa9a8bc7f 164 SUPERFAMILY SSF102405 5 155 1.68E-28 T 06-07-2017 APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 520 718 1.1E-49 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 Pfam PF02706 Chain length determinant protein 19 165 2.6E-12 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 Gene3D G3DSA:3.40.50.300 538 724 4.1E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 549 714 1.0E-13 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 Pfam PF13807 G-rich domain on putative tyrosine kinase 383 458 9.2E-10 T 06-07-2017 IPR032807 Tyrosine kinase, G-rich domain APT55_RS12750 ab22d5d0c82ee72fbc925aefbe368fe4 732 SUPERFAMILY SSF52540 537 715 9.63E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 Pfam PF00106 short chain dehydrogenase 4 200 2.1E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 Gene3D G3DSA:3.40.50.720 1 243 3.4E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS18555 95af3bb8e0e916ae6392fb976c6a2654 243 SUPERFAMILY SSF51735 4 243 1.39E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11020 671e091475ff99b1e6676324ae12c4de 301 PIRSF PIRSF035875 1 295 1.7E-79 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS11020 671e091475ff99b1e6676324ae12c4de 301 Pfam PF03631 Virulence factor BrkB 19 277 4.0E-64 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS11020 671e091475ff99b1e6676324ae12c4de 301 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 15 276 1.0E-27 T 06-07-2017 IPR017039 Virulence factor BrkB APT55_RS15385 5f59ddf9f99a881569cc5f0eabde5b2e 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 2.2E-24 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS15385 5f59ddf9f99a881569cc5f0eabde5b2e 142 Gene3D G3DSA:3.10.180.10 1 127 1.1E-44 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS15385 5f59ddf9f99a881569cc5f0eabde5b2e 142 SUPERFAMILY SSF54593 1 126 2.01E-36 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS15385 5f59ddf9f99a881569cc5f0eabde5b2e 142 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 130 7.5E-64 T 06-07-2017 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 SUPERFAMILY SSF51556 85 438 9.77E-58 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 Gene3D G3DSA:2.30.40.10 32 90 5.7E-13 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 SUPERFAMILY SSF51338 438 506 5.89E-28 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 SUPERFAMILY SSF51338 30 84 5.89E-28 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 Gene3D G3DSA:3.20.20.140 91 478 1.7E-71 T 06-07-2017 APT55_RS19960 b11e77e9dca9ba75f13f81a5370aeeca 513 Pfam PF01979 Amidohydrolase family 317 491 2.3E-13 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS16170 07e3008faef8db8a5cbe72e42a587483 456 Gene3D G3DSA:3.90.1300.10 5 450 1.3E-146 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16170 07e3008faef8db8a5cbe72e42a587483 456 Pfam PF01425 Amidase 23 441 1.4E-115 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16170 07e3008faef8db8a5cbe72e42a587483 456 SUPERFAMILY SSF75304 5 449 4.06E-140 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16170 07e3008faef8db8a5cbe72e42a587483 456 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 6 454 1.2E-222 T 06-07-2017 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 Gene3D G3DSA:3.90.1150.10 342 438 1.1E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 Gene3D G3DSA:3.90.1150.10 10 62 1.1E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 Gene3D G3DSA:3.40.640.10 63 340 2.0E-87 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 250 287 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 SUPERFAMILY SSF53383 11 437 5.08E-123 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS23970 be6a7e6fa70bc985078d1f91abf5831e 439 Pfam PF00202 Aminotransferase class-III 19 436 8.9E-118 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS25825 0975a62c86b68627d5f282c2e812e4d9 289 Gene3D G3DSA:3.40.50.150 7 230 9.0E-49 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25825 0975a62c86b68627d5f282c2e812e4d9 289 SUPERFAMILY SSF53335 108 204 1.57E-10 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25825 0975a62c86b68627d5f282c2e812e4d9 289 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 103 207 6.6E-27 T 06-07-2017 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Gene3D G3DSA:1.25.40.10 244 337 1.7E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Gene3D G3DSA:1.25.40.10 338 390 3.6E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SUPERFAMILY SSF48452 366 452 4.93E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Pfam PF13432 Tetratricopeptide repeat 394 448 0.017 T 06-07-2017 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Pfam PF13432 Tetratricopeptide repeat 292 351 4.2E-5 T 06-07-2017 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Pfam PF13181 Tetratricopeptide repeat 185 216 0.0096 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SUPERFAMILY SSF48452 54 391 2.62E-60 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Gene3D G3DSA:1.25.40.10 391 451 2.3E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 116 149 0.0015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 354 387 4.9 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 184 217 0.0017 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 48 81 18.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 388 421 0.32 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 218 251 0.0052 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 286 319 1.9E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 82 115 0.32 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 422 455 36.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 150 183 1.3E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 252 285 31.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 SMART SM00028 320 353 0.1 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Pfam PF13414 TPR repeat 229 266 8.3E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Pfam PF13414 TPR repeat 123 159 3.8E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Gene3D G3DSA:1.25.40.10 46 147 2.5E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23475 e1ab128ebc2712b3f6bd04bf6727eba9 471 Gene3D G3DSA:1.25.40.10 148 243 2.7E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 Pfam PF14697 4Fe-4S dicluster domain 21 89 2.0E-10 T 06-07-2017 APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 6 93 8.4E-43 T 06-07-2017 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 Gene3D G3DSA:3.30.70.20 15 94 3.7E-14 T 06-07-2017 APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 27 38 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS11710 da65c5590b9355e5b579a97551bca160 96 SUPERFAMILY SSF54862 8 94 5.02E-17 T 06-07-2017 APT55_RS17960 9f4640e99c1d42effa8c37875da2f45f 336 SUPERFAMILY SSF53850 35 267 9.86E-22 T 06-07-2017 APT55_RS17960 9f4640e99c1d42effa8c37875da2f45f 336 Gene3D G3DSA:3.40.190.10 116 232 3.5E-11 T 06-07-2017 APT55_RS17960 9f4640e99c1d42effa8c37875da2f45f 336 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 41 238 1.4E-26 T 06-07-2017 APT55_RS01035 c0ee2b8e246e72bc33afae11bb0c2d4c 271 Pfam PF13413 Helix-turn-helix domain 114 171 1.3E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS01035 c0ee2b8e246e72bc33afae11bb0c2d4c 271 SUPERFAMILY SSF47413 108 176 1.16E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS01035 c0ee2b8e246e72bc33afae11bb0c2d4c 271 Gene3D G3DSA:1.10.260.40 110 183 4.8E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13075 81c7aa619bbafb06dd6b66a2fb12f5ce 277 Pfam PF13649 Methyltransferase domain 57 146 2.0E-11 T 06-07-2017 APT55_RS13075 81c7aa619bbafb06dd6b66a2fb12f5ce 277 SUPERFAMILY SSF53335 14 167 6.9E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS13075 81c7aa619bbafb06dd6b66a2fb12f5ce 277 Gene3D G3DSA:3.40.50.150 34 253 1.3E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS14025 425867894ab7b7d86263afa7c017dd15 325 Pfam PF03851 UV-endonuclease UvdE 5 260 5.4E-69 T 06-07-2017 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 APT55_RS14025 425867894ab7b7d86263afa7c017dd15 325 SUPERFAMILY SSF51658 37 218 5.8E-9 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain APT55_RS14025 425867894ab7b7d86263afa7c017dd15 325 TIGRFAM TIGR00629 uvde: UV damage endonuclease UvdE 12 290 3.1E-42 T 06-07-2017 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 SUPERFAMILY SSF53335 1 243 4.44E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 Pfam PF00145 C-5 cytosine-specific DNA methylase 4 175 5.2E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 147 160 9.4E-8 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 9.4E-8 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 104 118 9.4E-8 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 APT55_RS29600 a3187b895e2fa3a03143ada11e0d554c 256 Gene3D G3DSA:3.40.50.150 2 173 1.7E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS02755 552661cbdf314adc7d99145ba2ff8197 440 Pfam PF00805 Pentapeptide repeats (8 copies) 165 202 2.2E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02755 552661cbdf314adc7d99145ba2ff8197 440 Pfam PF00805 Pentapeptide repeats (8 copies) 56 94 9.4E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02755 552661cbdf314adc7d99145ba2ff8197 440 Pfam PF00805 Pentapeptide repeats (8 copies) 205 230 0.001 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02755 552661cbdf314adc7d99145ba2ff8197 440 SUPERFAMILY SSF141571 29 171 3.53E-34 T 06-07-2017 APT55_RS26065 2cb8fde297b8a58a33437fb32888788a 102 Pfam PF12159 Protein of unknown function (DUF3593) 5 90 5.1E-41 T 06-07-2017 IPR021995 Protein of unknown function DUF3593 APT55_RS20660 62b1f349a049ed58cbffe9d008619dd3 180 Pfam PF00498 FHA domain 89 154 3.9E-19 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS20660 62b1f349a049ed58cbffe9d008619dd3 180 SMART SM00240 88 138 2.4E-13 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS20660 62b1f349a049ed58cbffe9d008619dd3 180 Gene3D G3DSA:2.60.200.20 77 163 5.7E-24 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS20660 62b1f349a049ed58cbffe9d008619dd3 180 SUPERFAMILY SSF49879 58 164 6.7E-25 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS21245 cd0d848635819ee19a8599abaa092006 111 Pfam PF06967 Mo-dependent nitrogenase C-terminus 33 110 1.2E-41 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS11460 abb7f7a1aec83a367dd5a0379a10eec8 95 SUPERFAMILY SSF141571 16 91 3.66E-18 T 06-07-2017 APT55_RS11460 abb7f7a1aec83a367dd5a0379a10eec8 95 Pfam PF00805 Pentapeptide repeats (8 copies) 40 77 4.0E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21575 4436c68213a343ac2bdce38a165a9398 262 Gene3D G3DSA:3.40.50.620 72 213 1.4E-33 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS21575 4436c68213a343ac2bdce38a165a9398 262 Pfam PF02698 DUF218 domain 78 252 5.7E-36 T 06-07-2017 IPR003848 Domain of unknown function DUF218 APT55_RS23815 2513e4007435cfad09cfade9e8b9a50a 302 SMART SM00382 32 215 2.3E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS23815 2513e4007435cfad09cfade9e8b9a50a 302 Pfam PF00005 ABC transporter 24 166 1.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS23815 2513e4007435cfad09cfade9e8b9a50a 302 Gene3D G3DSA:3.40.50.300 3 231 1.5E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23815 2513e4007435cfad09cfade9e8b9a50a 302 SUPERFAMILY SSF52540 3 229 9.27E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06725 4e6c401e1589323b45a7f1eca89482ca 256 TIGRFAM TIGR03442 TIGR03442: ergothioneine biosynthesis protein EgtC 1 256 5.8E-100 T 06-07-2017 IPR017808 Ergothioneine biosynthesis protein EgtC GO:0052699 APT55_RS06725 4e6c401e1589323b45a7f1eca89482ca 256 SUPERFAMILY SSF56235 2 248 3.97E-30 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS06725 4e6c401e1589323b45a7f1eca89482ca 256 Gene3D G3DSA:3.60.20.10 1 248 1.6E-48 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS06725 4e6c401e1589323b45a7f1eca89482ca 256 Pfam PF13230 Glutamine amidotransferases class-II 28 203 2.1E-14 T 06-07-2017 IPR026869 Putative glutamine amidotransferase type 2 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 SUPERFAMILY SSF51735 12 151 3.89E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PIRSF PIRSF000102 8 321 9.3E-104 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 12 150 4.1E-39 T 06-07-2017 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 Gene3D G3DSA:3.90.110.10 152 316 8.4E-57 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 Gene3D G3DSA:3.40.50.720 9 151 4.8E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 SUPERFAMILY SSF56327 151 313 3.31E-53 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 154 315 3.0E-30 T 06-07-2017 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 12 312 1.2E-135 T 06-07-2017 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 Hamap MF_00487 Malate dehydrogenase [mdh]. 10 315 44.088 T 06-07-2017 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PRINTS PR00086 L-lactate dehydrogenase signature 36 60 1.3E-29 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PRINTS PR00086 L-lactate dehydrogenase signature 148 166 1.3E-29 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PRINTS PR00086 L-lactate dehydrogenase signature 124 144 1.3E-29 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PRINTS PR00086 L-lactate dehydrogenase signature 12 36 1.3E-29 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS05210 ebce56d1742c05a3613e69e8fe8498c1 322 PRINTS PR00086 L-lactate dehydrogenase signature 178 191 1.3E-29 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 Gene3D G3DSA:3.40.50.1820 416 659 1.8E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 550 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 446 464 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 606 628 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 588 603 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 500 519 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 472 496 3.6E-51 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 Pfam PF00326 Prolyl oligopeptidase family 463 676 8.5E-69 T 06-07-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 SUPERFAMILY SSF50993 2 410 5.75E-103 T 06-07-2017 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 8 402 4.5E-116 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 Gene3D G3DSA:2.130.10.120 73 406 4.2E-117 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS25400 6baeed9735a035ea26c160906acb6597 679 SUPERFAMILY SSF53474 414 660 1.17E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 Pfam PF00675 Insulinase (Peptidase family M16) 63 177 9.6E-11 T 06-07-2017 IPR011765 Peptidase M16, N-terminal APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 Pfam PF05193 Peptidase M16 inactive domain 211 389 1.2E-35 T 06-07-2017 IPR007863 Peptidase M16, C-terminal APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 SUPERFAMILY SSF63411 276 470 2.23E-47 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 Gene3D G3DSA:3.30.830.10 275 456 1.5E-35 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 Gene3D G3DSA:3.30.830.10 39 263 1.5E-43 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 APT55_RS26305 9672c3485eee8fb95e82c596867fe48e 488 SUPERFAMILY SSF63411 36 260 4.43E-45 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PIRSF PIRSF002133 1 124 6.8E-56 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.4E-71 T 06-07-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 SUPERFAMILY SSF50249 2 124 3.6E-54 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 40.853 T 06-07-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 Gene3D G3DSA:2.40.50.140 1 123 4.6E-68 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 Pfam PF00164 Ribosomal protein S12/S23 8 123 4.3E-45 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16610 eab96bc4edd7679a850368d9a1a3114b 128 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.6E-63 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS17360 b0407743064848405933d9ccffeccd0a 257 Gene3D G3DSA:3.20.20.70 1 237 8.4E-87 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS17360 b0407743064848405933d9ccffeccd0a 257 Pfam PF00977 Histidine biosynthesis protein 2 230 4.6E-81 T 06-07-2017 IPR006062 Histidine biosynthesis GO:0000105 APT55_RS17360 b0407743064848405933d9ccffeccd0a 257 SUPERFAMILY SSF51366 1 237 2.02E-75 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS17360 b0407743064848405933d9ccffeccd0a 257 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 238 38.044 T 06-07-2017 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APT55_RS17360 b0407743064848405933d9ccffeccd0a 257 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 5.0E-83 T 06-07-2017 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 SUPERFAMILY SSF52172 1 177 1.46E-46 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 Gene3D G3DSA:1.10.10.10 125 223 3.3E-36 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 Pfam PF00072 Response regulator receiver domain 4 114 4.2E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 SMART SM00448 2 113 1.1E-45 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 SMART SM00862 146 221 2.2E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 Gene3D G3DSA:3.40.50.2300 2 123 5.8E-42 T 06-07-2017 APT55_RS28165 58bbc87c2078087cf6fb14dcf23b6d34 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 220 4.6E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS21790 87a049d23608f2c3e2933e6cb87b202f 149 Pfam PF01844 HNH endonuclease 22 66 4.7E-11 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS21790 87a049d23608f2c3e2933e6cb87b202f 149 SMART SM00507 9 64 5.4E-8 T 06-07-2017 IPR003615 HNH nuclease APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 Gene3D G3DSA:1.25.10.10 464 508 8.8E-9 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 Gene3D G3DSA:1.25.10.10 571 657 8.8E-9 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 Gene3D G3DSA:1.25.10.10 335 392 8.8E-9 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 SUPERFAMILY SSF48371 711 735 2.09E-12 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 SUPERFAMILY SSF48371 431 651 2.09E-12 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS27435 dc1e672a503d264bdf5683a6ba81c010 882 SUPERFAMILY SSF48371 336 404 2.09E-12 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 13 194 1.6E-39 T 06-07-2017 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 SUPERFAMILY SSF52540 5 226 1.84E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 Gene3D G3DSA:3.40.50.300 4 232 2.0E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 SMART SM00382 29 212 7.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02320 d129e03f17bb40fe9233aaf7332dd91c 283 Pfam PF00005 ABC transporter 21 163 9.1E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 Gene3D G3DSA:3.20.20.70 2 63 4.3E-38 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 Gene3D G3DSA:3.20.20.70 95 153 4.3E-38 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 SMART SM00116 103 151 9.9E-14 T 06-07-2017 IPR000644 CBS domain APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 SMART SM00116 12 60 1.5E-9 T 06-07-2017 IPR000644 CBS domain APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 SUPERFAMILY SSF54631 4 150 3.66E-39 T 06-07-2017 APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 Pfam PF00571 CBS domain 5 56 1.5E-15 T 06-07-2017 IPR000644 CBS domain APT55_RS23545 03c30caa7ab9619ffda800c0b00aeafd 156 Pfam PF00571 CBS domain 95 150 3.2E-15 T 06-07-2017 IPR000644 CBS domain APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 3 267 1.2E-64 T 06-07-2017 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 SUPERFAMILY SSF53335 3 268 1.14E-74 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 Gene3D G3DSA:1.10.8.100 203 268 1.4E-21 T 06-07-2017 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201 APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 Gene3D G3DSA:3.40.50.150 3 198 4.0E-64 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 2 269 54.865 T 06-07-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 SMART SM00650 18 199 6.0E-76 T 06-07-2017 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 3 267 3.5E-84 T 06-07-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APT55_RS24115 9581a02683f27b8f211c42d0929dc0f1 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 34 61 - T 06-07-2017 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 APT55_RS07185 0ec6ac80784414b646edb4a893a0281b 212 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 201 1.5E-45 T 06-07-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APT55_RS07185 0ec6ac80784414b646edb4a893a0281b 212 SUPERFAMILY SSF51366 4 205 3.3E-59 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS07185 0ec6ac80784414b646edb4a893a0281b 212 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 207 37.214 T 06-07-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APT55_RS07185 0ec6ac80784414b646edb4a893a0281b 212 Gene3D G3DSA:3.20.20.70 4 205 5.4E-68 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS30285 25d1ba275386174a87ff91a247f2640b 251 SUPERFAMILY SSF46689 190 240 5.82E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30285 25d1ba275386174a87ff91a247f2640b 251 Pfam PF12833 Helix-turn-helix domain 161 238 4.1E-17 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS30285 25d1ba275386174a87ff91a247f2640b 251 Gene3D G3DSA:1.10.10.60 137 191 6.4E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30285 25d1ba275386174a87ff91a247f2640b 251 SMART SM00342 153 237 1.5E-10 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT55_RS30285 25d1ba275386174a87ff91a247f2640b 251 Gene3D G3DSA:1.10.10.60 206 236 9.4E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS11505 12d1d1b693e1ca7210c0e080928737d8 66 Gene3D G3DSA:1.10.3460.10 31 52 7.3E-5 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS11505 12d1d1b693e1ca7210c0e080928737d8 66 SUPERFAMILY SSF103511 18 53 2.09E-9 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS11505 12d1d1b693e1ca7210c0e080928737d8 66 Pfam PF00504 Chlorophyll A-B binding protein 28 49 2.6E-5 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SMART SM00388 344 411 3.6E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Gene3D G3DSA:3.30.450.20 32 122 1.0E-5 T 06-07-2017 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Gene3D G3DSA:1.10.287.130 337 396 5.4E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Gene3D G3DSA:3.30.565.10 397 583 5.0E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SUPERFAMILY SSF47384 329 413 1.55E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SUPERFAMILY SSF55785 32 125 6.09E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 461 581 2.2E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Gene3D G3DSA:3.30.450.40 154 324 4.5E-15 T 06-07-2017 IPR029016 GAF domain-like APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SUPERFAMILY SSF55781 154 318 2.14E-21 T 06-07-2017 IPR029016 GAF domain-like APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SMART SM00387 459 582 2.7E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SUPERFAMILY SSF55874 400 582 9.3E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 SMART SM00065 171 318 1.5E-23 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 345 411 5.1E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 2.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 579 2.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 534 2.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 520 2.0E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15505 bfea8b9a7d185daa9cda0bdc27ce4b32 590 Pfam PF13492 GAF domain 172 310 1.0E-9 T 06-07-2017 IPR003018 GAF domain GO:0005515 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 142 158 5.5E-9 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 158 173 5.5E-9 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 Pfam PF13545 Crp-like helix-turn-helix domain 124 184 8.2E-16 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 ProSitePatterns PS00042 Crp-type HTH domain signature. 144 167 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 Gene3D G3DSA:2.60.120.10 28 88 1.5E-4 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 SUPERFAMILY SSF51206 26 92 6.47E-7 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 SMART SM00419 136 184 6.3E-15 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 Gene3D G3DSA:1.10.10.10 119 188 1.8E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29055 7a235a1b3ea6900b96da4710a68fb2cf 192 SUPERFAMILY SSF46785 119 185 1.78E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 SUPERFAMILY SSF74650 10 229 5.34E-46 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 Pfam PF13802 Galactose mutarotase-like 135 201 1.5E-16 T 06-07-2017 IPR025887 Glycoside hydrolase family 31, N-terminal domain APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 Pfam PF01055 Glycosyl hydrolases family 31 222 671 3.1E-161 T 06-07-2017 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 SUPERFAMILY SSF51445 231 585 5.72E-97 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 Pfam PF16338 Domain of unknown function (DUF4968) 28 116 1.4E-18 T 06-07-2017 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 SUPERFAMILY SSF51011 587 666 4.75E-24 T 06-07-2017 APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 Pfam PF17137 Domain of unknown function (DUF5110) 687 730 2.1E-6 T 06-07-2017 IPR033403 Domain of unknown function DUF5110 APT55_RS10100 6d34aa73431fe67f617704bc548c3928 765 ProSitePatterns PS00129 Glycosyl hydrolases family 31 active site. 394 401 - T 06-07-2017 IPR030458 Glycosyl hydrolases family 31, active site APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 PRINTS PR01217 Proline rich extensin signature 253 265 2.5E-9 T 06-07-2017 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 PRINTS PR01217 Proline rich extensin signature 133 154 2.5E-9 T 06-07-2017 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 PRINTS PR01217 Proline rich extensin signature 186 203 2.5E-9 T 06-07-2017 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 PRINTS PR01217 Proline rich extensin signature 103 119 2.5E-9 T 06-07-2017 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 PRINTS PR01217 Proline rich extensin signature 158 174 2.5E-9 T 06-07-2017 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 Pfam PF13464 Domain of unknown function (DUF4115) 273 336 3.0E-16 T 06-07-2017 IPR025194 Domain of unknown function DUF4115 APT55_RS12385 ed0842d9d2418adf94ef86889c6afcb3 347 Pfam PF13413 Helix-turn-helix domain 16 74 5.1E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS14045 68021e20f8e01b034955cdf579d79899 271 Gene3D G3DSA:3.40.1190.20 7 263 1.3E-95 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS14045 68021e20f8e01b034955cdf579d79899 271 Pfam PF08543 Phosphomethylpyrimidine kinase 16 260 1.2E-91 T 06-07-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 APT55_RS14045 68021e20f8e01b034955cdf579d79899 271 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 9 263 2.9E-102 T 06-07-2017 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT55_RS14045 68021e20f8e01b034955cdf579d79899 271 SUPERFAMILY SSF53613 7 267 2.18E-75 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 SUPERFAMILY SSF52540 4 113 4.06E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 SUPERFAMILY SSF52540 142 278 4.06E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 SMART SM00382 34 245 2.6E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Gene3D G3DSA:3.40.50.300 140 272 1.5E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Gene3D G3DSA:3.40.50.300 6 106 1.5E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Gene3D G3DSA:2.40.50.140 318 378 3.8E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Pfam PF00005 ABC transporter 25 195 6.9E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Gene3D G3DSA:2.40.50.100 379 394 1.8E-14 T 06-07-2017 APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Gene3D G3DSA:2.40.50.100 273 317 1.8E-14 T 06-07-2017 APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 SUPERFAMILY SSF50331 270 393 6.52E-26 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 Pfam PF08402 TOBE domain 313 385 4.9E-10 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS10380 febe2e325485df6c1765e3ee94013e5b 398 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 SUPERFAMILY SSF88946 26 101 2.35E-24 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 SUPERFAMILY SSF88659 169 234 5.79E-6 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 234 6.6E-19 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 Gene3D G3DSA:1.10.601.10 26 100 9.8E-19 T 06-07-2017 APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 Gene3D G3DSA:1.10.10.10 177 235 1.7E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19865 f6406b8915d01585f053e752aa8ac659 246 Pfam PF04542 Sigma-70 region 2 34 100 1.5E-13 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS14130 989019fc6593597bd379db433872bda1 423 Pfam PF13091 PLD-like domain 266 387 1.1E-26 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS14130 989019fc6593597bd379db433872bda1 423 Pfam PF13091 PLD-like domain 78 181 5.3E-13 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 APT55_RS14130 989019fc6593597bd379db433872bda1 423 Gene3D G3DSA:3.30.870.10 266 415 2.4E-31 T 06-07-2017 APT55_RS14130 989019fc6593597bd379db433872bda1 423 Gene3D G3DSA:3.30.870.10 65 239 5.5E-30 T 06-07-2017 APT55_RS14130 989019fc6593597bd379db433872bda1 423 SUPERFAMILY SSF56024 212 409 6.06E-34 T 06-07-2017 APT55_RS14130 989019fc6593597bd379db433872bda1 423 SUPERFAMILY SSF56024 49 239 2.95E-37 T 06-07-2017 APT55_RS14130 989019fc6593597bd379db433872bda1 423 SMART SM00155 336 363 0.011 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS14130 989019fc6593597bd379db433872bda1 423 SMART SM00155 158 185 0.068 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT55_RS27160 8d735d437d7aadf7d304cb73b26bb535 196 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 7 65 1.8E-11 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS27160 8d735d437d7aadf7d304cb73b26bb535 196 SUPERFAMILY SSF47413 7 67 7.67E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS27160 8d735d437d7aadf7d304cb73b26bb535 196 Gene3D G3DSA:1.10.260.40 9 82 6.0E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07560 1f395976f6ac095b8a2847587aeda961 120 Pfam PF04982 HPP family 64 107 3.0E-14 T 06-07-2017 IPR007065 HPP APT55_RS06020 d127fa1d85a1de16e3e83473a9ef80b0 103 Gene3D G3DSA:1.10.260.40 16 35 6.8E-4 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS20040 77e27d2ec16680b5133835701966e45b 441 SUPERFAMILY SSF50022 4 129 3.67E-30 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS20040 77e27d2ec16680b5133835701966e45b 441 Pfam PF08417 Pheophorbide a oxygenase 218 301 1.4E-30 T 06-07-2017 IPR013626 Pheophorbide a oxygenase GO:0010277|GO:0055114 APT55_RS20040 77e27d2ec16680b5133835701966e45b 441 Pfam PF00355 Rieske [2Fe-2S] domain 10 95 1.1E-17 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS20040 77e27d2ec16680b5133835701966e45b 441 SUPERFAMILY SSF55961 119 334 3.71E-27 T 06-07-2017 APT55_RS20040 77e27d2ec16680b5133835701966e45b 441 Gene3D G3DSA:2.102.10.10 9 131 6.8E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 SUPERFAMILY SSF51206 13 92 8.62E-6 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 SUPERFAMILY SSF52540 592 838 1.25E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 177 839 1.7E-244 T 06-07-2017 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Pfam PF00005 ABC transporter 619 768 1.5E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Gene3D G3DSA:1.20.1560.10 275 586 2.4E-84 T 06-07-2017 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Pfam PF03412 Peptidase C39 family 146 259 6.1E-12 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 SMART SM00382 628 814 3.2E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Gene3D G3DSA:3.40.50.300 602 831 1.6E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Pfam PF00664 ABC transporter transmembrane region 290 556 2.5E-54 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 Gene3D G3DSA:3.90.70.10 145 263 1.0E-13 T 06-07-2017 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 ProSitePatterns PS00211 ABC transporters family signature. 740 754 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS04755 e8312e7892cd0f2866c97e9ae6d777f5 842 SUPERFAMILY SSF90123 275 589 9.29E-73 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS12840 2d3cb26abc876c1d28e7caa8f55c8ea7 230 TIGRFAM TIGR04153 cyanosortA_assc: cyanosortase A-associated protein 39 225 2.7E-42 T 06-07-2017 IPR026411 Cyanosortase A-associated protein APT55_RS02600 41e805c4cd4247e1c3439c3c2e9285d3 319 Pfam PF01578 Cytochrome C assembly protein 68 313 4.6E-81 T 06-07-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APT55_RS02600 41e805c4cd4247e1c3439c3c2e9285d3 319 Hamap MF_01391 Cytochrome c biogenesis protein CcsA [ccsA]. 1 319 30.393 T 06-07-2017 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 APT55_RS02600 41e805c4cd4247e1c3439c3c2e9285d3 319 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 45 316 1.3E-108 T 06-07-2017 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 Gene3D G3DSA:2.60.450.10 170 257 1.2E-5 T 06-07-2017 APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 Gene3D G3DSA:2.60.450.10 263 346 7.7E-9 T 06-07-2017 APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 Gene3D G3DSA:2.60.450.10 75 107 1.2E-5 T 06-07-2017 APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 24 123 3.5E-12 T 06-07-2017 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 19 110 8.1E-9 T 06-07-2017 IPR010664 Lipopolysaccharide assembly, LptC-related APT55_RS24240 ebd20487a13ebdad9a362cd79acf9e72 367 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 265 352 2.6E-5 T 06-07-2017 IPR010664 Lipopolysaccharide assembly, LptC-related APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 Gene3D G3DSA:3.40.30.10 5 104 5.3E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 PRINTS PR00421 Thioredoxin family signature 29 38 2.7E-6 T 06-07-2017 APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 PRINTS PR00421 Thioredoxin family signature 21 29 2.7E-6 T 06-07-2017 APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 PRINTS PR00421 Thioredoxin family signature 69 80 2.7E-6 T 06-07-2017 APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 PIRSF PIRSF000077 1 105 4.3E-26 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 Pfam PF00085 Thioredoxin 6 102 1.3E-22 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 APT55_RS21880 96e6835c8b884a9de2cfb7b54fb87eb2 115 SUPERFAMILY SSF52833 6 106 7.88E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 Gene3D G3DSA:3.40.50.720 389 651 6.3E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 SMART SM01007 20 221 3.6E-32 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 SUPERFAMILY SSF53639 18 222 2.94E-31 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 22 221 1.1E-25 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 Gene3D G3DSA:3.40.225.10 19 227 2.8E-29 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 479 490 4.1E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 553 572 4.1E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 574 591 4.1E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 411 428 4.1E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 SUPERFAMILY SSF51735 408 651 1.25E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 416 651 5.0E-41 T 06-07-2017 APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 479 490 1.8E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23855 2fcf736606f8136ccfc3e02fcb4f9944 656 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 553 572 1.8E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS22085 7c23cdf160160786c7d8683a19a134da 399 SUPERFAMILY SSF53300 236 375 1.24E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22085 7c23cdf160160786c7d8683a19a134da 399 SMART SM00327 235 394 8.1E-6 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22085 7c23cdf160160786c7d8683a19a134da 399 Gene3D G3DSA:3.40.50.410 238 354 1.4E-4 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22085 7c23cdf160160786c7d8683a19a134da 399 Pfam PF05762 VWA domain containing CoxE-like protein 173 392 1.3E-46 T 06-07-2017 IPR008912 Uncharacterised protein family CoxE-like APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 Pfam PF02796 Helix-turn-helix domain of resolvase 294 327 2.4E-5 T 06-07-2017 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 SUPERFAMILY SSF46689 292 327 1.52E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 39 81 3.5E-6 T 06-07-2017 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 Gene3D G3DSA:1.10.10.60 293 327 6.3E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 Pfam PF01610 Transposase 421 541 3.8E-14 T 06-07-2017 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain APT55_RS30680 1c5c25482454a5c497d3251eb6dafe63 548 Pfam PF01610 Transposase 158 281 2.4E-18 T 06-07-2017 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain APT55_RS31095 3f6c2250c033592a122647259fe990d5 73 Pfam PF01381 Helix-turn-helix 10 63 7.5E-10 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS31095 3f6c2250c033592a122647259fe990d5 73 Gene3D G3DSA:1.10.260.40 1 64 4.0E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31095 3f6c2250c033592a122647259fe990d5 73 SUPERFAMILY SSF47413 1 66 4.86E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31095 3f6c2250c033592a122647259fe990d5 73 SMART SM00530 6 63 1.5E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS22975 8312164911a56f7af9d5c809613d42f5 312 Pfam PF12697 Alpha/beta hydrolase family 40 289 1.2E-13 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS22975 8312164911a56f7af9d5c809613d42f5 312 Gene3D G3DSA:3.40.50.1820 16 297 3.3E-31 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS22975 8312164911a56f7af9d5c809613d42f5 312 SUPERFAMILY SSF53474 15 299 2.67E-30 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 SUPERFAMILY SSF51206 607 728 5.63E-22 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 Gene3D G3DSA:2.60.120.10 602 731 4.0E-21 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 Pfam PF00916 Sulfate permease family 26 409 1.2E-37 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 SUPERFAMILY SSF52091 470 583 1.65E-13 T 06-07-2017 IPR002645 STAS domain APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 Pfam PF01740 STAS domain 472 557 2.1E-11 T 06-07-2017 IPR002645 STAS domain APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 SMART SM00100 606 724 1.0E-11 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 Gene3D G3DSA:3.30.750.24 471 555 1.7E-10 T 06-07-2017 IPR002645 STAS domain APT55_RS08830 9e96fde421fab0254d06de89228f46ee 742 Pfam PF00027 Cyclic nucleotide-binding domain 626 710 4.5E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS28735 0ed783440382b5721b352ba0d7830c13 165 Pfam PF08592 Domain of unknown function (DUF1772) 23 158 7.6E-20 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 APT55_RS09670 8a18fb26879953260af8bf972651b8dd 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 1 94 24.205 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT55_RS09670 8a18fb26879953260af8bf972651b8dd 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 2 93 1.7E-27 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT55_RS09670 8a18fb26879953260af8bf972651b8dd 96 SUPERFAMILY SSF141000 1 92 5.36E-30 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT55_RS09670 8a18fb26879953260af8bf972651b8dd 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 18 89 2.4E-20 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT55_RS15435 1be24788038c4feffaccc1001b2d981d 389 Pfam PF14907 Uncharacterised nucleotidyltransferase 29 277 1.0E-49 T 06-07-2017 APT55_RS12405 d9423799f78c048748423e1a2139fd52 205 Pfam PF01618 MotA/TolQ/ExbB proton channel family 68 189 2.4E-29 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS12575 bd61946b9bbbb7334064e25740775d03 248 SUPERFAMILY SSF56281 30 199 8.11E-14 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS12575 bd61946b9bbbb7334064e25740775d03 248 Gene3D G3DSA:3.60.15.10 23 210 3.0E-31 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS12575 bd61946b9bbbb7334064e25740775d03 248 Pfam PF13483 Beta-lactamase superfamily domain 31 193 1.6E-42 T 06-07-2017 APT55_RS09210 0d4dc181e9a3c47f0ee3f497f2b544b4 206 Gene3D G3DSA:3.90.1570.10 6 201 2.6E-21 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS09210 0d4dc181e9a3c47f0ee3f497f2b544b4 206 SUPERFAMILY SSF52980 4 201 1.66E-21 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS09210 0d4dc181e9a3c47f0ee3f497f2b544b4 206 Pfam PF05685 Putative restriction endonuclease 12 199 3.2E-43 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS11160 ac0cf3f5c8827ff9f096f272f91336ac 416 Pfam PF14907 Uncharacterised nucleotidyltransferase 32 299 9.8E-59 T 06-07-2017 APT55_RS02515 59f9ada53edc209a595951e55b8725ae 390 SUPERFAMILY SSF51430 1 324 1.44E-48 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS02515 59f9ada53edc209a595951e55b8725ae 390 Gene3D G3DSA:3.20.20.100 1 262 9.3E-36 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS02515 59f9ada53edc209a595951e55b8725ae 390 Pfam PF00248 Aldo/keto reductase family 20 173 6.3E-21 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain APT55_RS00840 60c2ca243da5ace0cd43c018a57a0986 381 SMART SM01204 227 361 1.9E-23 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS00840 60c2ca243da5ace0cd43c018a57a0986 381 Pfam PF08495 FIST N domain 37 223 2.3E-32 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS00840 60c2ca243da5ace0cd43c018a57a0986 381 Pfam PF10442 FIST C domain 245 359 8.2E-18 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS00840 60c2ca243da5ace0cd43c018a57a0986 381 SMART SM00897 33 226 1.4E-30 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS27375 254a4e9858708a10033f1a86915639e0 240 Pfam PF09353 Domain of unknown function (DUF1995) 5 212 1.2E-58 T 06-07-2017 IPR018962 Domain of unknown function DUF1995 APT55_RS17835 5429fe8ba6288ad9260220ebb4694e20 262 Pfam PF00857 Isochorismatase family 50 247 1.8E-41 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS17835 5429fe8ba6288ad9260220ebb4694e20 262 SUPERFAMILY SSF52499 31 252 4.84E-51 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS17835 5429fe8ba6288ad9260220ebb4694e20 262 Gene3D G3DSA:3.40.50.850 15 257 2.3E-66 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 SUPERFAMILY SSF53955 519 647 2.21E-8 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 Gene3D G3DSA:1.10.530.10 519 647 2.7E-6 T 06-07-2017 APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 Pfam PF01551 Peptidase family M23 736 838 5.6E-25 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 Pfam PF01464 Transglycosylase SLT domain 523 593 3.4E-7 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 SUPERFAMILY SSF51261 711 842 1.62E-39 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 Gene3D G3DSA:2.70.70.10 702 842 1.3E-38 T 06-07-2017 APT55_RS00660 f94a8874a86db462cb0a1d5b627ff623 1422 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 222 296 8.4E-17 T 06-07-2017 IPR013491 Caudovirus, tape measure, N-terminal APT55_RS18150 567db0111dec6efda83074c073a26be6 290 Gene3D G3DSA:2.30.30.240 85 153 5.0E-9 T 06-07-2017 APT55_RS18150 567db0111dec6efda83074c073a26be6 290 Pfam PF05239 PRC-barrel domain 84 153 2.3E-6 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS18150 567db0111dec6efda83074c073a26be6 290 SUPERFAMILY SSF50346 85 152 1.28E-9 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS27380 7780387593fb3c791971eae3717556db 299 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 281 1.0E-79 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS27380 7780387593fb3c791971eae3717556db 299 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 280 7.0E-94 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS27380 7780387593fb3c791971eae3717556db 299 SUPERFAMILY SSF51569 4 281 1.17E-85 T 06-07-2017 APT55_RS27380 7780387593fb3c791971eae3717556db 299 PIRSF PIRSF001359 1 281 4.5E-84 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT55_RS27380 7780387593fb3c791971eae3717556db 299 Gene3D G3DSA:3.20.20.70 1 283 1.3E-98 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS17385 5313d6fb888cb3b6b4a1c6b67c7dc5bf 486 SUPERFAMILY SSF56935 380 481 5.13E-6 T 06-07-2017 APT55_RS17385 5313d6fb888cb3b6b4a1c6b67c7dc5bf 486 Gene3D G3DSA:2.40.160.10 399 479 4.7E-4 T 06-07-2017 IPR023614 Porin domain APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 Gene3D G3DSA:3.30.70.790 72 143 9.9E-29 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 Hamap MF_00822 Urease accessory protein UreE [ureE]. 4 139 22.089 T 06-07-2017 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 SUPERFAMILY SSF69287 5 71 1.96E-15 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 Pfam PF02814 UreE urease accessory protein, N-terminal domain 18 63 1.5E-14 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 Gene3D G3DSA:2.60.260.20 7 69 1.7E-12 T 06-07-2017 APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 Pfam PF05194 UreE urease accessory protein, C-terminal domain 72 143 3.5E-22 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 SMART SM00988 2 65 4.8E-13 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 SUPERFAMILY SSF69737 71 138 5.1E-20 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 APT55_RS22765 2e9a2cffb5fc74fa7c351f1134eb9246 143 PIRSF PIRSF036402 5 143 4.3E-41 T 06-07-2017 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 APT55_RS08810 334d9cff85f0f97aa51c6473a942c887 196 Gene3D G3DSA:1.10.10.10 3 111 5.6E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS08810 334d9cff85f0f97aa51c6473a942c887 196 SUPERFAMILY SSF46785 3 113 4.62E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04035 478fa4dbd879adffa0eca7f250b74b41 531 Pfam PF00999 Sodium/hydrogen exchanger family 24 401 2.7E-72 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS21860 2436c094e7762bda17d4cdff1d090628 164 SUPERFAMILY SSF46458 1 145 1.94E-19 T 06-07-2017 IPR009050 Globin-like APT55_RS21860 2436c094e7762bda17d4cdff1d090628 164 Gene3D G3DSA:1.10.490.20 1 107 2.1E-11 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS21860 2436c094e7762bda17d4cdff1d090628 164 Pfam PF00502 Phycobilisome protein 12 107 2.3E-9 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS01855 f9c41183a3b2e080724fee3a4b31991f 199 SUPERFAMILY SSF52833 7 197 2.42E-72 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01855 f9c41183a3b2e080724fee3a4b31991f 199 Gene3D G3DSA:3.40.30.10 7 197 3.3E-87 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01855 f9c41183a3b2e080724fee3a4b31991f 199 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 162 195 4.5E-10 T 06-07-2017 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS01855 f9c41183a3b2e080724fee3a4b31991f 199 PIRSF PIRSF000239 2 198 7.9E-64 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS01855 f9c41183a3b2e080724fee3a4b31991f 199 Pfam PF00578 AhpC/TSA family 9 141 1.7E-43 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS18430 73468c8f8445496c4725a060ca375320 213 SMART SM00754 78 212 2.4E-12 T 06-07-2017 IPR010895 CHRD APT55_RS18430 73468c8f8445496c4725a060ca375320 213 Pfam PF07452 CHRD domain 81 208 5.3E-19 T 06-07-2017 IPR010895 CHRD APT55_RS11100 cf18484ce19624714e1eb7d663fc68f9 178 Gene3D G3DSA:3.40.50.2300 41 165 1.9E-23 T 06-07-2017 APT55_RS11100 cf18484ce19624714e1eb7d663fc68f9 178 SMART SM00448 40 162 5.2E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11100 cf18484ce19624714e1eb7d663fc68f9 178 SUPERFAMILY SSF52172 42 168 2.85E-23 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS11100 cf18484ce19624714e1eb7d663fc68f9 178 Pfam PF00072 Response regulator receiver domain 42 162 2.0E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22410 c9d5fdae678645b681339c0e8bc4a859 525 Pfam PF04966 Carbohydrate-selective porin, OprB family 120 525 6.3E-80 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS22410 c9d5fdae678645b681339c0e8bc4a859 525 Pfam PF00395 S-layer homology domain 54 96 2.0E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS18835 46a61455ffca87def2b622e228536856 281 Gene3D G3DSA:1.10.3720.10 21 275 5.8E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18835 46a61455ffca87def2b622e228536856 281 SUPERFAMILY SSF161098 27 267 4.06E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18835 46a61455ffca87def2b622e228536856 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 274 3.1E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18835 46a61455ffca87def2b622e228536856 281 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 275 5.4E-118 T 06-07-2017 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 APT55_RS18835 46a61455ffca87def2b622e228536856 281 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 11 273 4.8E-113 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT55_RS02280 d68f2fd84c5f597fd2fac53d28bc0848 355 Gene3D G3DSA:3.90.550.10 5 241 8.3E-63 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS02280 d68f2fd84c5f597fd2fac53d28bc0848 355 SUPERFAMILY SSF53448 5 236 2.65E-65 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS02280 d68f2fd84c5f597fd2fac53d28bc0848 355 Pfam PF00535 Glycosyl transferase family 2 8 133 1.6E-32 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS27655 13e0c9a014c328bd59fa83058f0b3a69 455 Pfam PF10092 Uncharacterized protein conserved in bacteria (DUF2330) 24 375 1.4E-105 T 06-07-2017 IPR019283 Protein of unknown function DUF2330 APT55_RS27655 13e0c9a014c328bd59fa83058f0b3a69 455 PIRSF PIRSF026449 1 451 8.9E-225 T 06-07-2017 IPR016838 Uncharacterised conserved protein UCP026449 APT55_RS19170 dc6d00aac7bf0e2c892b90948871f514 188 Pfam PF05685 Putative restriction endonuclease 14 183 8.4E-35 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS19170 dc6d00aac7bf0e2c892b90948871f514 188 SUPERFAMILY SSF52980 3 187 6.43E-40 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS19170 dc6d00aac7bf0e2c892b90948871f514 188 Gene3D G3DSA:3.90.1570.10 3 187 2.4E-45 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Pfam PF00364 Biotin-requiring enzyme 4 75 7.7E-18 T 06-07-2017 IPR000089 Biotin/lipoyl attachment APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Gene3D G3DSA:3.30.559.10 196 422 2.2E-63 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 SUPERFAMILY SSF52777 195 422 2.94E-64 T 06-07-2017 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 SUPERFAMILY SSF47005 125 169 1.57E-11 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Gene3D G3DSA:2.40.50.100 1 96 2.5E-32 T 06-07-2017 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 SUPERFAMILY SSF51230 1 95 2.36E-26 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 208 424 1.5E-64 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Pfam PF02817 e3 binding domain 130 165 1.5E-14 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 Gene3D G3DSA:4.10.320.10 125 172 5.5E-18 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 APT55_RS03325 26b63aa45aa79a6745f72090d51cb31f 429 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT55_RS02390 f58e5e2d2a5c3ebfd780c89019264aed 141 Pfam PF08670 MEKHLA domain 6 140 9.7E-56 T 06-07-2017 IPR013978 MEKHLA APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 275 1.8E-136 T 06-07-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 06-07-2017 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 49.088 T 06-07-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 SUPERFAMILY SSF50249 3 125 3.05E-48 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Gene3D G3DSA:4.10.950.10 196 275 9.7E-35 T 06-07-2017 IPR014726 Ribosomal protein L2, domain 3 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 PIRSF PIRSF002158 5 277 2.1E-96 T 06-07-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 SMART SM01383 42 118 9.8E-42 T 06-07-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Gene3D G3DSA:2.40.50.140 1 114 8.1E-51 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 116 7.1E-30 T 06-07-2017 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 SUPERFAMILY SSF50104 126 273 1.02E-60 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Gene3D G3DSA:2.30.30.30 119 195 5.4E-35 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 2.5E-57 T 06-07-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS24720 ac0b5e902888df1dcd5d245a1614173f 287 SMART SM01382 124 253 1.3E-91 T 06-07-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 SUPERFAMILY SSF101353 242 457 1.83E-58 T 06-07-2017 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 Gene3D G3DSA:3.30.930.10 6 237 1.8E-102 T 06-07-2017 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 648 691 9.0E-18 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 9.0E-29 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 273 289 9.0E-29 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 195 206 9.0E-29 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 297 310 9.0E-29 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 222 235 9.0E-29 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 SUPERFAMILY SSF55681 7 241 5.47E-97 T 06-07-2017 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 872 177.257 T 06-07-2017 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 Pfam PF01411 tRNA synthetases class II (A) 9 548 1.5E-214 T 06-07-2017 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 9 851 0.0 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 SUPERFAMILY SSF55186 547 705 1.23E-46 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 SMART SM00863 648 691 4.1E-21 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 Pfam PF02272 DHHA1 domain 797 865 1.7E-12 T 06-07-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APT55_RS10040 0279bae50a7d1e89e24ae90fccc7de7a 874 SUPERFAMILY SSF50447 450 547 2.36E-20 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS15255 f54ce68515a4736ce638905095a1c5db 161 TIGRFAM TIGR04045 MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family 3 147 6.3E-62 T 06-07-2017 IPR024035 GNAT N-acetyltransferase, putative APT55_RS15255 f54ce68515a4736ce638905095a1c5db 161 Pfam PF00583 Acetyltransferase (GNAT) family 49 123 2.6E-7 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS15255 f54ce68515a4736ce638905095a1c5db 161 SUPERFAMILY SSF55729 3 146 1.08E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS15255 f54ce68515a4736ce638905095a1c5db 161 Gene3D G3DSA:3.40.630.30 10 138 2.5E-18 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS12860 54cc919797dd653d69f5b9f6bbd53d17 87 Pfam PF08865 Domain of unknown function (DUF1830) 17 82 5.0E-34 T 06-07-2017 IPR014964 Protein of unknown function DUF1830 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 Pfam PF00486 Transcriptional regulatory protein, C terminal 177 253 4.4E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 SUPERFAMILY SSF52172 20 152 2.85E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 SMART SM00448 19 140 2.0E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 Gene3D G3DSA:1.10.10.10 154 253 1.8E-35 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 SMART SM00862 177 253 2.4E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 SUPERFAMILY SSF46894 154 253 1.7E-31 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 Gene3D G3DSA:3.40.50.2300 20 153 2.2E-41 T 06-07-2017 APT55_RS27265 7bcb201b988493db77c2d720b4a6b8e2 254 Pfam PF00072 Response regulator receiver domain 21 139 6.6E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28110 1122b7b6daf618a0b43ceda014e34637 388 Pfam PF04326 Putative DNA-binding domain 14 144 7.4E-17 T 06-07-2017 IPR007421 Schlafen, AAA domain GO:0005524 APT55_RS04425 7c1952ba73bdf1e718d387f83b6d650c 140 Gene3D G3DSA:3.90.79.10 5 122 2.1E-18 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS04425 7c1952ba73bdf1e718d387f83b6d650c 140 SUPERFAMILY SSF55811 5 118 1.62E-20 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS04425 7c1952ba73bdf1e718d387f83b6d650c 140 Pfam PF00293 NUDIX domain 4 82 1.1E-12 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 APT55_RS29175 e9b0d74b122e3c7bfafb06007c054a21 142 SUPERFAMILY SSF47384 37 118 1.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29175 e9b0d74b122e3c7bfafb06007c054a21 142 SMART SM00388 51 118 3.2E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29175 e9b0d74b122e3c7bfafb06007c054a21 142 Gene3D G3DSA:1.10.287.130 45 114 5.3E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29175 e9b0d74b122e3c7bfafb06007c054a21 142 Pfam PF00512 His Kinase A (phospho-acceptor) domain 53 117 7.7E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 SUPERFAMILY SSF52172 1 177 1.09E-36 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 SMART SM00862 145 220 1.0E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 Gene3D G3DSA:1.10.10.10 124 222 4.4E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 Gene3D G3DSA:3.40.50.2300 1 119 3.4E-34 T 06-07-2017 APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 SMART SM00448 1 112 1.7E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 1.1E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS14185 48712cdfb89907d31376ac5099cbe7a8 224 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS17320 9120cb961191fec462ccc97979d4dcdc 98 Gene3D G3DSA:1.10.260.40 22 86 1.3E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS17320 9120cb961191fec462ccc97979d4dcdc 98 Pfam PF13744 Helix-turn-helix domain 13 93 7.9E-17 T 06-07-2017 APT55_RS17320 9120cb961191fec462ccc97979d4dcdc 98 SUPERFAMILY SSF47413 23 93 4.22E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS11875 8275159406bbd06c615f641967f10801 146 Pfam PF02082 Transcriptional regulator 4 85 4.4E-25 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS11875 8275159406bbd06c615f641967f10801 146 SUPERFAMILY SSF46785 5 134 2.13E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11875 8275159406bbd06c615f641967f10801 146 Gene3D G3DSA:1.10.10.10 4 136 1.1E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11875 8275159406bbd06c615f641967f10801 146 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 131 1.1E-31 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 SUPERFAMILY SSF90123 11 327 6.8E-65 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 Gene3D G3DSA:3.40.50.300 341 571 3.4E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 SMART SM00382 367 553 2.9E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 Pfam PF00005 ABC transporter 358 506 1.9E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 Gene3D G3DSA:1.20.1560.10 10 327 1.1E-63 T 06-07-2017 APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 Pfam PF00664 ABC transporter transmembrane region 25 286 4.9E-44 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 APT55_RS13200 02f6e54e0f697949fa67ee30f2de4728 584 SUPERFAMILY SSF52540 333 576 2.17E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15415 6a9951664058cdac6016150072f2807f 343 Pfam PF00535 Glycosyl transferase family 2 8 166 8.1E-24 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS15415 6a9951664058cdac6016150072f2807f 343 Gene3D G3DSA:3.90.550.10 8 210 1.0E-49 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS15415 6a9951664058cdac6016150072f2807f 343 SUPERFAMILY SSF53448 6 212 1.13E-49 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 Pfam PF00082 Subtilase family 349 603 5.1E-37 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 413 423 - T 06-07-2017 IPR022398 Peptidase S8, subtilisin, His-active site APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 Gene3D G3DSA:2.130.10.130 44 262 1.1E-12 T 06-07-2017 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 569 579 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 SUPERFAMILY SSF52743 330 606 1.7E-70 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 97 158 2.3E-6 T 06-07-2017 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 Gene3D G3DSA:3.40.50.200 326 606 4.0E-74 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 SUPERFAMILY SSF69318 42 284 2.62E-24 T 06-07-2017 APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 354 365 - T 06-07-2017 IPR023827 Peptidase S8, subtilisin, Asp-active site APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 PRINTS PR00723 Subtilisin serine protease family (S8) signature 409 422 1.5E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 PRINTS PR00723 Subtilisin serine protease family (S8) signature 349 368 1.5E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS13250 9fc4537b4a61a5af900b149b16b5cb4a 608 PRINTS PR00723 Subtilisin serine protease family (S8) signature 568 584 1.5E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS07700 1971fbaaba7b3c934e03464e96077592 328 Pfam PF05239 PRC-barrel domain 16 84 1.3E-10 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS07700 1971fbaaba7b3c934e03464e96077592 328 Gene3D G3DSA:3.90.50.10 29 122 9.7E-11 T 06-07-2017 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 APT55_RS07700 1971fbaaba7b3c934e03464e96077592 328 SUPERFAMILY SSF50346 7 122 3.73E-32 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS07700 1971fbaaba7b3c934e03464e96077592 328 TIGRFAM TIGR02271 TIGR02271: conserved domain 200 315 7.4E-16 T 06-07-2017 IPR019060 Domain of unknown function DUF2382 APT55_RS07700 1971fbaaba7b3c934e03464e96077592 328 Pfam PF09557 Domain of unknown function (DUF2382) 200 311 3.1E-32 T 06-07-2017 IPR019060 Domain of unknown function DUF2382 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 SUPERFAMILY SSF46894 166 230 3.4E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 Gene3D G3DSA:3.40.50.2300 2 120 9.2E-33 T 06-07-2017 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 184 3.8E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 200 3.8E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 212 3.8E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 ProSitePatterns PS00622 LuxR-type HTH domain signature. 184 211 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 Pfam PF00072 Response regulator receiver domain 6 118 8.4E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 Pfam PF00196 Bacterial regulatory proteins, luxR family 169 223 8.1E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 SMART SM00421 167 224 1.6E-24 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 SMART SM00448 4 118 1.4E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 Gene3D G3DSA:1.10.10.10 121 230 6.1E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11015 dbd1b807997445f394a901d07030c89a 231 SUPERFAMILY SSF52172 1 129 1.35E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS20775 4f0837da8176d9243318cf9dca30753b 284 Pfam PF16734 Type IV pilin-like G and H, putative 162 262 1.1E-13 T 06-07-2017 IPR031975 Type IV pilin-like putative secretion pathway protein G/H APT55_RS12260 bf07dbac4f9f8cf78c8888fd186f8a8b 117 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12260 bf07dbac4f9f8cf78c8888fd186f8a8b 117 SUPERFAMILY SSF52172 3 116 4.84E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12260 bf07dbac4f9f8cf78c8888fd186f8a8b 117 SMART SM00448 2 112 8.1E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS12260 bf07dbac4f9f8cf78c8888fd186f8a8b 117 Gene3D G3DSA:3.40.50.2300 2 116 1.5E-36 T 06-07-2017 APT55_RS08915 43d5a07e4cb72dec48e3baa36512ac71 382 Gene3D G3DSA:3.40.50.2300 49 163 7.0E-22 T 06-07-2017 APT55_RS08915 43d5a07e4cb72dec48e3baa36512ac71 382 Pfam PF13407 Periplasmic binding protein domain 63 319 1.2E-54 T 06-07-2017 IPR025997 Periplasmic binding protein APT55_RS08915 43d5a07e4cb72dec48e3baa36512ac71 382 Gene3D G3DSA:3.40.50.2300 164 356 1.8E-38 T 06-07-2017 APT55_RS08915 43d5a07e4cb72dec48e3baa36512ac71 382 SUPERFAMILY SSF53822 50 355 7.91E-59 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS07750 3d5441668728122695850bf6af56502e 390 PIRSF PIRSF005962 1 390 4.4E-124 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 APT55_RS07750 3d5441668728122695850bf6af56502e 390 Gene3D G3DSA:3.40.630.10 299 388 1.1E-95 T 06-07-2017 APT55_RS07750 3d5441668728122695850bf6af56502e 390 Gene3D G3DSA:3.40.630.10 1 179 1.1E-95 T 06-07-2017 APT55_RS07750 3d5441668728122695850bf6af56502e 390 SUPERFAMILY SSF55031 185 297 4.84E-31 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS07750 3d5441668728122695850bf6af56502e 390 Pfam PF01546 Peptidase family M20/M25/M40 74 384 1.7E-32 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 APT55_RS07750 3d5441668728122695850bf6af56502e 390 SUPERFAMILY SSF53187 299 388 7.48E-84 T 06-07-2017 APT55_RS07750 3d5441668728122695850bf6af56502e 390 SUPERFAMILY SSF53187 3 198 7.48E-84 T 06-07-2017 APT55_RS07750 3d5441668728122695850bf6af56502e 390 Pfam PF07687 Peptidase dimerisation domain 187 281 5.1E-15 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS07750 3d5441668728122695850bf6af56502e 390 Gene3D G3DSA:3.30.70.360 182 298 7.5E-38 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain APT55_RS07750 3d5441668728122695850bf6af56502e 390 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 376 6.6E-130 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 ProSitePatterns PS00104 EPSP synthase signature 1. 110 124 - T 06-07-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 35 452 1.5E-133 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 31 454 35.187 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 PIRSF PIRSF000505 21 454 1.2E-122 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 Gene3D G3DSA:3.65.10.10 43 254 1.3E-56 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 Gene3D G3DSA:3.65.10.10 255 450 4.6E-61 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 32 448 4.5E-137 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 SUPERFAMILY SSF55205 31 451 8.01E-138 T 06-07-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APT55_RS04030 0d69ff40146cf6828c7daa4a9ebd9109 455 ProSitePatterns PS00885 EPSP synthase signature 2. 365 383 - T 06-07-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT55_RS27775 acfd2e5039fbb0436dea0db1c415983c 278 SUPERFAMILY SSF53448 1 225 2.42E-26 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27775 acfd2e5039fbb0436dea0db1c415983c 278 Gene3D G3DSA:3.90.550.10 6 223 3.5E-16 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27775 acfd2e5039fbb0436dea0db1c415983c 278 Pfam PF01501 Glycosyl transferase family 8 70 134 1.1E-5 T 06-07-2017 IPR002495 Glycosyl transferase, family 8 GO:0016757 APT55_RS00065 19b64ba5b99896b30058d4bf7420ff21 842 Pfam PF03170 Bacterial cellulose synthase subunit 145 739 5.6E-116 T 06-07-2017 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 APT55_RS29915 8394d2c1a2c885050131e3782a5213ea 350 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 47 127 1.5E-18 T 06-07-2017 IPR022385 Rhs repeat-associated core GO:0097264 APT55_RS29915 8394d2c1a2c885050131e3782a5213ea 350 Pfam PF14040 Deoxyribonuclease NucA/NucB 235 312 9.8E-7 T 06-07-2017 IPR029476 Deoxyribonuclease NucA/NucB APT55_RS26335 fc9d2a4f4380a550fbbf849ef65242cd 580 Gene3D G3DSA:2.30.310.10 3 165 1.2E-45 T 06-07-2017 APT55_RS26335 fc9d2a4f4380a550fbbf849ef65242cd 580 Pfam PF05670 Domain of unknown function (DUF814) 461 545 8.4E-26 T 06-07-2017 IPR008532 Domain of unknown function DUF814 APT55_RS26335 fc9d2a4f4380a550fbbf849ef65242cd 580 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 5 447 7.9E-127 T 06-07-2017 APT55_RS19245 7fd57a0c0742e95b701e3b686c4de63a 144 SUPERFAMILY SSF159664 20 141 2.62E-34 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 APT55_RS19245 7fd57a0c0742e95b701e3b686c4de63a 144 Pfam PF01890 Cobalamin synthesis G C-terminus 22 139 1.5E-36 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 APT55_RS19245 7fd57a0c0742e95b701e3b686c4de63a 144 Gene3D G3DSA:3.30.420.180 21 141 3.2E-36 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 APT55_RS03885 6c99ccac24ea1ff933196c39640df62a 318 Pfam PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term 164 281 1.4E-11 T 06-07-2017 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 APT55_RS03885 6c99ccac24ea1ff933196c39640df62a 318 SUPERFAMILY SSF53756 17 313 5.02E-49 T 06-07-2017 APT55_RS11910 e84d94b7eaf4d203eb78a81a5fc49e7a 203 Pfam PF06080 Protein of unknown function (DUF938) 7 202 2.5E-79 T 06-07-2017 IPR010342 Protein of unknown function DUF938 APT55_RS11910 e84d94b7eaf4d203eb78a81a5fc49e7a 203 SUPERFAMILY SSF53335 7 196 1.34E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11910 e84d94b7eaf4d203eb78a81a5fc49e7a 203 Gene3D G3DSA:3.40.50.150 9 191 4.1E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10655 4c690fe95ce354b449ae795a38973bfd 311 Pfam PF05050 Methyltransferase FkbM domain 102 245 7.5E-12 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS10655 4c690fe95ce354b449ae795a38973bfd 311 Gene3D G3DSA:3.40.50.150 89 254 7.3E-32 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10655 4c690fe95ce354b449ae795a38973bfd 311 SUPERFAMILY SSF53335 55 241 3.53E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10655 4c690fe95ce354b449ae795a38973bfd 311 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 100 239 6.3E-26 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 SMART SM00418 41 119 9.3E-31 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 64 82 - T 06-07-2017 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 Pfam PF01022 Bacterial regulatory protein, arsR family 49 92 6.2E-18 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 90 105 1.2E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.2E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 75 90 1.2E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 73 1.2E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 Gene3D G3DSA:1.10.10.10 29 124 3.9E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS16415 1734885d4416df4544e87be1e6c89fd4 125 SUPERFAMILY SSF46785 28 122 1.02E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01955 e49602b0b275fbbce1d8f27fdee445dd 208 SUPERFAMILY SSF52980 10 202 2.36E-15 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS01955 e49602b0b275fbbce1d8f27fdee445dd 208 Gene3D G3DSA:3.90.1570.10 11 203 2.4E-17 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS01955 e49602b0b275fbbce1d8f27fdee445dd 208 Pfam PF05685 Putative restriction endonuclease 16 200 7.1E-38 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS19985 baa6df02c7570e19e249075d4ed04a59 316 Pfam PF05853 beta-keto acid cleavage enzyme 6 292 2.1E-67 T 06-07-2017 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 APT55_RS19985 baa6df02c7570e19e249075d4ed04a59 316 Gene3D G3DSA:3.20.20.70 6 295 2.9E-69 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS13570 d4ff71b08b790364d3af1c0fc07cee22 126 Gene3D G3DSA:3.40.50.2300 4 123 3.0E-39 T 06-07-2017 APT55_RS13570 d4ff71b08b790364d3af1c0fc07cee22 126 SMART SM00448 2 115 3.8E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13570 d4ff71b08b790364d3af1c0fc07cee22 126 Pfam PF00072 Response regulator receiver domain 4 115 5.0E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13570 d4ff71b08b790364d3af1c0fc07cee22 126 SUPERFAMILY SSF52172 3 123 8.54E-39 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 Pfam PF01494 FAD binding domain 7 332 6.1E-7 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 Gene3D G3DSA:3.50.50.60 112 192 3.6E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 Gene3D G3DSA:3.50.50.60 291 380 3.6E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 Gene3D G3DSA:3.50.50.60 8 41 3.6E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 SUPERFAMILY SSF51905 294 365 2.69E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11075 d605cbedd08eb282c2c249d452b5c04b 461 SUPERFAMILY SSF51905 6 191 2.69E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 Pfam PF00586 AIR synthase related protein, N-terminal domain 51 153 4.2E-17 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 Gene3D G3DSA:3.30.1330.10 22 155 2.5E-23 T 06-07-2017 IPR016188 PurM-like, N-terminal domain APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 PIRSF PIRSF005644 4 338 3.8E-118 T 06-07-2017 IPR011854 Hydrogenase expression/formation protein HypE APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 SUPERFAMILY SSF55326 7 156 3.49E-33 T 06-07-2017 APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 Pfam PF02769 AIR synthase related protein, C-terminal domain 165 316 7.2E-26 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 SUPERFAMILY SSF56042 161 334 3.44E-39 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 8 338 6.1E-133 T 06-07-2017 IPR011854 Hydrogenase expression/formation protein HypE APT55_RS03680 5c665ac1230e154793b98b47b3459397 338 Gene3D G3DSA:3.90.650.10 163 317 1.2E-21 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 SMART SM00116 324 372 1.3E-4 T 06-07-2017 IPR000644 CBS domain APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 PIRSF PIRSF006404 1 380 7.7E-117 T 06-07-2017 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 SUPERFAMILY SSF54631 248 372 2.81E-16 T 06-07-2017 APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 Pfam PF13398 Peptidase M50B-like 58 140 7.9E-6 T 06-07-2017 APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 Pfam PF00571 CBS domain 324 372 1.3E-4 T 06-07-2017 IPR000644 CBS domain APT55_RS01950 3be848afc42c0542a98f46981106ef30 410 Gene3D G3DSA:3.10.580.10 243 376 1.6E-14 T 06-07-2017 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 SUPERFAMILY SSF81296 8 151 4.2E-46 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 98 2.0E-19 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 Gene3D G3DSA:2.60.40.10 8 156 2.9E-56 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 Gene3D G3DSA:2.60.40.1180 594 706 1.1E-27 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 SUPERFAMILY SSF51011 595 705 2.52E-23 T 06-07-2017 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 Gene3D G3DSA:3.20.20.80 157 582 5.4E-131 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 SMART SM00642 163 574 1.4E-9 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 Pfam PF00128 Alpha amylase, catalytic domain 194 299 3.7E-10 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 SUPERFAMILY SSF51445 506 582 3.14E-139 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 SUPERFAMILY SSF51445 138 477 3.14E-139 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS27675 7af29b576e6ea8421b2a48c6c6c41112 708 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 8 705 0.0 T 06-07-2017 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 APT55_RS16720 1051f16d5af0e68a4ec091c54dfc42c5 560 Pfam PF05128 Domain of unknown function (DUF697) 326 483 4.8E-43 T 06-07-2017 IPR021147 Protein of unknown function DUF697 APT55_RS16720 1051f16d5af0e68a4ec091c54dfc42c5 560 Gene3D G3DSA:3.40.50.300 131 258 1.2E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16720 1051f16d5af0e68a4ec091c54dfc42c5 560 SUPERFAMILY SSF52540 117 258 3.87E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 Gene3D G3DSA:3.30.360.10 143 270 6.8E-33 T 06-07-2017 APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 Gene3D G3DSA:3.30.360.10 307 361 6.8E-33 T 06-07-2017 APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 Gene3D G3DSA:3.40.50.720 1 142 3.0E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 206 8.7E-11 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 SUPERFAMILY SSF51735 3 156 3.57E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 SUPERFAMILY SSF55347 131 293 1.8E-32 T 06-07-2017 APT55_RS03920 e8c94abcd1ad0c6471579df66e2e747d 362 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 123 2.1E-25 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 46 212 2.3E-30 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 SUPERFAMILY SSF88946 25 129 2.88E-23 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 Gene3D G3DSA:1.10.10.10 151 215 1.7E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 SUPERFAMILY SSF88659 134 214 1.64E-17 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 Pfam PF04542 Sigma-70 region 2 49 116 3.3E-17 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 Pfam PF08281 Sigma-70, region 4 156 208 2.7E-15 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS01585 83ca508d818ed6cd49591edf1f55f242 219 Gene3D G3DSA:1.10.1740.10 24 137 4.8E-28 T 06-07-2017 APT55_RS13295 b7aca7319aee3dfd3b14170f59a92ef0 253 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 38 211 1.1E-51 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS13295 b7aca7319aee3dfd3b14170f59a92ef0 253 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 36 213 2.0E-33 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS18090 b6dac80dafdf60e55a145bf4edcf793d 215 SUPERFAMILY SSF81342 5 215 1.22E-69 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS18090 b6dac80dafdf60e55a145bf4edcf793d 215 Gene3D G3DSA:1.20.810.10 6 214 1.5E-77 T 06-07-2017 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 APT55_RS18090 b6dac80dafdf60e55a145bf4edcf793d 215 Hamap MF_00633 Cytochrome b6 [petB]. 1 215 43.771 T 06-07-2017 IPR023530 Cytochrome b6, PetB GO:0005506|GO:0016021|GO:0020037|GO:0022900|GO:0045158 APT55_RS18090 b6dac80dafdf60e55a145bf4edcf793d 215 Pfam PF00033 Cytochrome b/b6/petB 22 210 7.5E-83 T 06-07-2017 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT55_RS18090 b6dac80dafdf60e55a145bf4edcf793d 215 PIRSF PIRSF000032 1 215 2.8E-121 T 06-07-2017 IPR023530 Cytochrome b6, PetB GO:0005506|GO:0016021|GO:0020037|GO:0022900|GO:0045158 APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 SMART SM00382 43 230 3.6E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 SMART SM00382 292 486 6.8E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 SUPERFAMILY SSF52540 17 241 3.91E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 Pfam PF00005 ABC transporter 34 183 1.7E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 Pfam PF00005 ABC transporter 286 437 2.4E-18 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 SUPERFAMILY SSF52540 279 490 1.43E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 Gene3D G3DSA:3.40.50.300 17 246 1.4E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20295 f3731024ce650e318d155acd9c20d657 517 Gene3D G3DSA:3.40.50.300 283 508 3.4E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03050 4d5e752affaaff8649474cb98f0a9737 148 SUPERFAMILY SSF46785 13 135 1.42E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS03050 4d5e752affaaff8649474cb98f0a9737 148 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 12 134 1.6E-29 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS03050 4d5e752affaaff8649474cb98f0a9737 148 Pfam PF02082 Transcriptional regulator 12 90 2.2E-22 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS03050 4d5e752affaaff8649474cb98f0a9737 148 Gene3D G3DSA:1.10.10.10 13 141 2.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00130 a1b97954c0b0d5bca29fc4950112b1c2 168 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 11 159 5.0E-63 T 06-07-2017 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 APT55_RS00130 a1b97954c0b0d5bca29fc4950112b1c2 168 SUPERFAMILY SSF55040 18 162 2.35E-58 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 APT55_RS00130 a1b97954c0b0d5bca29fc4950112b1c2 168 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 9 165 35.565 T 06-07-2017 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type Reactome: R-HSA-947581 APT55_RS00130 a1b97954c0b0d5bca29fc4950112b1c2 168 Gene3D G3DSA:3.30.70.640 10 164 5.7E-66 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 APT55_RS00130 a1b97954c0b0d5bca29fc4950112b1c2 168 Pfam PF01967 MoaC family 22 157 3.8E-53 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 APT55_RS26635 ab91bc1ada830bf9d99d5bdabf677760 632 SUPERFAMILY SSF51126 224 321 5.81E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26635 ab91bc1ada830bf9d99d5bdabf677760 632 SUPERFAMILY SSF51126 35 158 3.77E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26635 ab91bc1ada830bf9d99d5bdabf677760 632 SUPERFAMILY SSF51126 322 424 4.08E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 Pfam PF13545 Crp-like helix-turn-helix domain 153 222 4.3E-7 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 Pfam PF00027 Cyclic nucleotide-binding domain 32 118 2.7E-18 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 Gene3D G3DSA:1.10.10.10 153 226 8.0E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 SMART SM00100 13 135 4.2E-16 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 SUPERFAMILY SSF51206 1 143 2.36E-31 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS20495 2de24b8fa18595d5b98cb666fb2bada0 231 Gene3D G3DSA:2.60.120.10 8 144 8.0E-31 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS30905 91857f4690a1606a69ec0854ed055e1f 224 Pfam PF01609 Transposase DDE domain 100 223 7.4E-10 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS30905 91857f4690a1606a69ec0854ed055e1f 224 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 9 82 1.6E-29 T 06-07-2017 IPR025161 Putative transposase IS4/IS5 family APT55_RS21510 62ef4c1b5872fef52751fb2d8740530a 248 Gene3D G3DSA:1.20.1260.10 63 193 5.6E-4 T 06-07-2017 IPR012347 Ferritin-related APT55_RS21510 62ef4c1b5872fef52751fb2d8740530a 248 SUPERFAMILY SSF47240 31 203 1.83E-12 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS05670 13c75b3d3c2869d3a8249b79759fee70 116 Pfam PF03960 ArsC family 56 112 2.0E-10 T 06-07-2017 IPR006660 Arsenate reductase-like APT55_RS05670 13c75b3d3c2869d3a8249b79759fee70 116 Pfam PF00462 Glutaredoxin 5 50 4.7E-7 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT55_RS05670 13c75b3d3c2869d3a8249b79759fee70 116 SUPERFAMILY SSF52833 3 114 1.6E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS05670 13c75b3d3c2869d3a8249b79759fee70 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 113 2.3E-38 T 06-07-2017 IPR006504 Transcriptional regulator Spx/MgsR APT55_RS05670 13c75b3d3c2869d3a8249b79759fee70 116 Gene3D G3DSA:3.40.30.10 1 113 3.3E-36 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS31345 f4b690e2204de8379eb3f8d01ba653ed 103 Gene3D G3DSA:3.30.70.900 7 97 1.5E-17 T 06-07-2017 APT55_RS31345 f4b690e2204de8379eb3f8d01ba653ed 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 76 5.0E-10 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain APT55_RS31345 f4b690e2204de8379eb3f8d01ba653ed 103 SUPERFAMILY SSF54909 1 96 6.19E-23 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS29610 df27beca08a9864b457a1b8df93556ac 70 Pfam PF10929 Protein of unknown function (DUF2811) 6 60 4.4E-15 T 06-07-2017 IPR021231 Protein of unknown function DUF2811 APT55_RS07585 356e3d0b8a8c62a47fa8d77b2a5658ef 186 SUPERFAMILY SSF52738 4 185 7.45E-58 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS07585 356e3d0b8a8c62a47fa8d77b2a5658ef 186 Gene3D G3DSA:3.40.50.180 3 185 1.5E-67 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS07585 356e3d0b8a8c62a47fa8d77b2a5658ef 186 Pfam PF01339 CheB methylesterase 6 180 2.7E-61 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT55_RS07645 244095293439f1255740dca55c7f5aef 562 Pfam PF01935 Domain of unknown function DUF87 151 376 5.2E-45 T 06-07-2017 IPR002789 Helicase HerA, central domain APT55_RS07645 244095293439f1255740dca55c7f5aef 562 Gene3D G3DSA:3.40.50.300 341 509 2.0E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07645 244095293439f1255740dca55c7f5aef 562 Gene3D G3DSA:3.40.50.300 153 247 2.0E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07645 244095293439f1255740dca55c7f5aef 562 SUPERFAMILY SSF52540 151 511 3.01E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24825 02edb94b481d19a0cbd991964a218cac 78 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 2 68 3.7E-16 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS24825 02edb94b481d19a0cbd991964a218cac 78 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 2 52 1.3E-8 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS24825 02edb94b481d19a0cbd991964a218cac 78 SUPERFAMILY SSF143120 2 77 3.4E-17 T 06-07-2017 APT55_RS24825 02edb94b481d19a0cbd991964a218cac 78 Gene3D G3DSA:3.40.1620.10 2 47 1.4E-4 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 295 535 1.3E-75 T 06-07-2017 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 Gene3D G3DSA:3.40.1280.10 384 537 7.3E-48 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 SUPERFAMILY SSF75217 360 538 1.24E-45 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 SMART SM00967 296 372 5.2E-22 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 Pfam PF00588 SpoU rRNA Methylase family 389 529 1.3E-36 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 296 371 1.2E-23 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 Gene3D G3DSA:3.30.1330.30 289 367 1.8E-24 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like APT55_RS08245 0ee934ff709bc9f778b6dbead00c8f4c 553 SUPERFAMILY SSF55315 289 369 7.77E-19 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like APT55_RS03495 68f7e5e1507fdb29f90b9beb2bdc10e2 387 Gene3D G3DSA:3.90.1150.10 255 384 9.5E-39 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS03495 68f7e5e1507fdb29f90b9beb2bdc10e2 387 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT55_RS03495 68f7e5e1507fdb29f90b9beb2bdc10e2 387 SUPERFAMILY SSF53383 3 384 1.46E-114 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03495 68f7e5e1507fdb29f90b9beb2bdc10e2 387 Pfam PF00155 Aminotransferase class I and II 32 379 1.5E-64 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS03495 68f7e5e1507fdb29f90b9beb2bdc10e2 387 Gene3D G3DSA:3.40.640.10 47 254 2.4E-67 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS30185 cafced4c3c25ccff4ed26b9b37e4003e 108 Pfam PF11535 Calcium binding 1 101 1.7E-45 T 06-07-2017 IPR020994 Uncharacterised protein family, calcium binding protein, CcbP APT55_RS22815 93433ec98ee6b4e4a88909bfc810dc94 97 Pfam PF01909 Nucleotidyltransferase domain 25 94 1.8E-11 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS22815 93433ec98ee6b4e4a88909bfc810dc94 97 Gene3D G3DSA:3.30.460.10 6 97 7.7E-22 T 06-07-2017 APT55_RS22815 93433ec98ee6b4e4a88909bfc810dc94 97 SUPERFAMILY SSF81301 7 97 1.01E-17 T 06-07-2017 APT55_RS02710 3ff56c2c5c06237f1f1bc8c737b90f86 201 SUPERFAMILY SSF52833 5 192 1.46E-50 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02710 3ff56c2c5c06237f1f1bc8c737b90f86 201 Gene3D G3DSA:3.40.30.10 11 170 9.0E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02710 3ff56c2c5c06237f1f1bc8c737b90f86 201 Pfam PF00578 AhpC/TSA family 12 136 1.1E-17 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS05395 abc05738bcfb1d7f5caa03fb7fe6e764 220 Pfam PF01300 Telomere recombination 24 208 1.6E-43 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 APT55_RS05395 abc05738bcfb1d7f5caa03fb7fe6e764 220 Gene3D G3DSA:3.90.870.10 4 215 4.7E-66 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS05395 abc05738bcfb1d7f5caa03fb7fe6e764 220 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 215 2.5E-66 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 APT55_RS05395 abc05738bcfb1d7f5caa03fb7fe6e764 220 SUPERFAMILY SSF55821 1 212 9.46E-56 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 SUPERFAMILY SSF52788 2 153 3.92E-47 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 Gene3D G3DSA:3.40.50.270 2 157 1.0E-48 T 06-07-2017 APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 150 7.0E-39 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 124 139 3.6E-19 T 06-07-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 3.6E-19 T 06-07-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 3.6E-19 T 06-07-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 48 64 3.6E-19 T 06-07-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT55_RS10995 e11b01c7ad2eeaaf83841f5df301844d 165 SMART SM00226 3 152 8.2E-46 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 Gene3D G3DSA:3.40.50.1820 5 269 3.0E-54 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 5.1E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 5.1E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 5.1E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 5.1E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 SUPERFAMILY SSF53474 6 267 4.92E-57 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 Pfam PF00561 alpha/beta hydrolase fold 16 253 4.2E-27 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00412 Epoxide hydrolase signature 40 55 2.2E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00412 Epoxide hydrolase signature 97 110 2.2E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS08255 0448a2cd466d8abefdbae4f113a753ce 274 PRINTS PR00412 Epoxide hydrolase signature 243 265 2.2E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS12735 4445c6313679d24051db5c1d0aa7f434 326 SUPERFAMILY SSF88713 38 158 6.92E-29 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS12735 4445c6313679d24051db5c1d0aa7f434 326 SUPERFAMILY SSF88713 193 210 6.92E-29 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS12735 4445c6313679d24051db5c1d0aa7f434 326 Gene3D G3DSA:3.20.20.370 5 154 4.4E-40 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS12735 4445c6313679d24051db5c1d0aa7f434 326 Gene3D G3DSA:3.20.20.370 192 313 4.4E-40 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS12735 4445c6313679d24051db5c1d0aa7f434 326 Pfam PF01522 Polysaccharide deacetylase 40 144 1.2E-19 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT55_RS07775 2bd2ea109b83d9ca5dd8da5a3954c774 64 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 64 2.2E-24 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07775 2bd2ea109b83d9ca5dd8da5a3954c774 64 SUPERFAMILY SSF57829 3 64 6.87E-18 T 06-07-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 APT55_RS07775 2bd2ea109b83d9ca5dd8da5a3954c774 64 Pfam PF00471 Ribosomal protein L33 10 64 3.5E-22 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07775 2bd2ea109b83d9ca5dd8da5a3954c774 64 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 64 18.701 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07775 2bd2ea109b83d9ca5dd8da5a3954c774 64 ProSitePatterns PS00582 Ribosomal protein L33 signature. 32 51 - T 06-07-2017 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00412 Epoxide hydrolase signature 34 52 6.6E-22 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00412 Epoxide hydrolase signature 230 246 6.6E-22 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00412 Epoxide hydrolase signature 264 286 6.6E-22 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00412 Epoxide hydrolase signature 97 110 6.6E-22 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 Pfam PF00561 alpha/beta hydrolase fold 29 274 4.7E-34 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 Gene3D G3DSA:3.40.50.1820 6 288 1.8E-92 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 1.7E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.7E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 1.7E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21375 86c92702e2567283bc1a06bd15f602d4 293 SUPERFAMILY SSF53474 6 289 3.38E-86 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 15 282 2.6E-106 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 SUPERFAMILY SSF54211 144 283 4.7E-48 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 15 283 1.5E-108 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 13 287 40.98 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 Gene3D G3DSA:3.30.230.20 14 136 1.2E-45 T 06-07-2017 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 SUPERFAMILY SSF54211 14 135 3.03E-37 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS05850 37d80be6c5eaf890b39129bd1a4847ec 290 Gene3D G3DSA:3.30.1700.10 140 284 8.1E-58 T 06-07-2017 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 APT55_RS09560 9cef1adaff8008f6372955436eebfd3b 192 SUPERFAMILY SSF55729 4 189 2.97E-64 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS09560 9cef1adaff8008f6372955436eebfd3b 192 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 192 66.55 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 APT55_RS09560 9cef1adaff8008f6372955436eebfd3b 192 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 4 191 3.4E-74 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 APT55_RS09560 9cef1adaff8008f6372955436eebfd3b 192 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 6 172 1.1E-60 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 APT55_RS05925 da361e1d8e84f785e539ebce7cd45354 378 SUPERFAMILY SSF56349 208 354 2.94E-9 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS05925 da361e1d8e84f785e539ebce7cd45354 378 Gene3D G3DSA:1.10.443.10 220 350 7.5E-5 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS22930 6e62080d0c06f258ac2ff95ed52ea4e0 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 300 3.4E-38 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS23725 2cbef6fbf9b344a842c08ec451bf35a2 102 Pfam PF13239 2TM domain 17 76 1.6E-8 T 06-07-2017 IPR025698 2TM domain APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 64 89 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 250 266 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 425 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 472 489 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 156 175 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 448 463 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 138 156 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 383 401 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 280 299 3.7E-78 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 42 564 2.6E-173 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 Pfam PF01019 Gamma-glutamyltranspeptidase 57 567 2.4E-183 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS28985 af74d6792ed75b59a9c02c30bb4f7990 572 SUPERFAMILY SSF56235 38 572 7.91E-189 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Gene3D G3DSA:3.40.50.720 10 123 7.8E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 SUPERFAMILY SSF53623 121 331 4.35E-65 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Pfam PF01225 Mur ligase family, catalytic domain 12 136 2.1E-21 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 SUPERFAMILY SSF51984 94 123 1.96E-23 T 06-07-2017 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 SUPERFAMILY SSF51984 10 67 1.96E-23 T 06-07-2017 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 12 478 1.9E-159 T 06-07-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Pfam PF08245 Mur ligase middle domain 140 313 5.9E-21 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 422 5.4E-19 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Gene3D G3DSA:3.90.190.20 336 482 5.7E-48 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 9 485 38.541 T 06-07-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 SUPERFAMILY SSF53244 333 478 1.51E-39 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT55_RS00540 92c22bd9d78b3dbe1c4374218dedd15d 491 Gene3D G3DSA:3.40.1190.10 124 335 4.2E-66 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT55_RS03365 101c99c8e8298e82257a41c22917cf0c 375 Pfam PF01551 Peptidase family M23 246 335 7.1E-32 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS03365 101c99c8e8298e82257a41c22917cf0c 375 Gene3D G3DSA:2.70.70.10 216 338 1.6E-43 T 06-07-2017 APT55_RS03365 101c99c8e8298e82257a41c22917cf0c 375 SUPERFAMILY SSF51261 178 335 1.2E-52 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS11650 fcf5cd445bfea63fe687a86ff6300bc2 178 Pfam PF00210 Ferritin-like domain 29 168 5.2E-24 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT55_RS11650 fcf5cd445bfea63fe687a86ff6300bc2 178 PIRSF PIRSF005900 7 173 4.2E-35 T 06-07-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 APT55_RS11650 fcf5cd445bfea63fe687a86ff6300bc2 178 Gene3D G3DSA:1.20.1260.10 4 172 2.4E-49 T 06-07-2017 IPR012347 Ferritin-related APT55_RS11650 fcf5cd445bfea63fe687a86ff6300bc2 178 SUPERFAMILY SSF47240 7 170 2.2E-38 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS11650 fcf5cd445bfea63fe687a86ff6300bc2 178 ProSitePatterns PS00819 Dps protein family signature 2. 75 89 - T 06-07-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT55_RS01475 287ddd0219d72c820e0c6c07dd316b86 462 Gene3D G3DSA:3.30.70.1230 268 451 1.2E-76 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS01475 287ddd0219d72c820e0c6c07dd316b86 462 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 272 447 2.0E-67 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS01475 287ddd0219d72c820e0c6c07dd316b86 462 SUPERFAMILY SSF55073 268 446 2.98E-68 T 06-07-2017 IPR029787 Nucleotide cyclase APT55_RS01475 287ddd0219d72c820e0c6c07dd316b86 462 SMART SM00044 236 431 3.4E-80 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 APT55_RS01475 287ddd0219d72c820e0c6c07dd316b86 462 ProSitePatterns PS00452 Guanylate cyclase signature. 380 403 - T 06-07-2017 IPR018297 Adenylyl cyclase class-4/guanylyl cyclase, conserved site GO:0009190|GO:0016849|GO:0035556 APT55_RS10880 8c4c107b4a1449d1175cdf4d7957387e 531 Gene3D G3DSA:3.40.50.300 34 315 1.8E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10880 8c4c107b4a1449d1175cdf4d7957387e 531 SUPERFAMILY SSF52540 34 218 2.82E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10880 8c4c107b4a1449d1175cdf4d7957387e 531 Pfam PF00350 Dynamin family 42 200 6.2E-25 T 06-07-2017 IPR022812 Dynamin superfamily APT55_RS18655 90d2960333e54add0976189aa983c991 176 Pfam PF11322 Protein of unknown function (DUF3124) 44 166 3.9E-52 T 06-07-2017 IPR021471 Protein of unknown function DUF3124 APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 Gene3D G3DSA:3.40.50.1240 6 246 1.5E-52 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 78 8.9E-19 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 106 228 1.2E-22 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 SUPERFAMILY SSF53254 104 229 3.4E-48 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 SUPERFAMILY SSF53254 5 77 3.4E-48 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS24555 ee4de1061a1ede449f070e8cd4faf32c 247 SMART SM00855 6 192 2.7E-21 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 Gene3D G3DSA:3.30.930.10 2 203 1.0E-100 T 06-07-2017 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 2 288 2.1E-161 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 Gene3D G3DSA:1.20.58.180 206 286 1.3E-39 T 06-07-2017 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 281 58.933 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 241 257 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 9.4E-66 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 280 6.1E-150 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT55_RS01060 49f1699de08e320899fbb9ca90ddf5c2 295 SUPERFAMILY SSF55681 1 280 1.34E-134 T 06-07-2017 APT55_RS02565 6fcd88c4a87f5776135a3fbcd03b64c1 324 Gene3D G3DSA:3.40.50.10490 180 323 4.3E-42 T 06-07-2017 APT55_RS02565 6fcd88c4a87f5776135a3fbcd03b64c1 324 Pfam PF01380 SIS domain 196 282 3.7E-13 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS02565 6fcd88c4a87f5776135a3fbcd03b64c1 324 Pfam PF01380 SIS domain 32 150 8.6E-22 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 APT55_RS02565 6fcd88c4a87f5776135a3fbcd03b64c1 324 Gene3D G3DSA:3.40.50.10490 2 179 2.3E-47 T 06-07-2017 APT55_RS02565 6fcd88c4a87f5776135a3fbcd03b64c1 324 SUPERFAMILY SSF53697 5 323 1.39E-77 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 Gene3D G3DSA:3.40.190.10 42 149 3.6E-20 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 Gene3D G3DSA:3.40.190.10 324 370 3.6E-20 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 Gene3D G3DSA:3.40.190.10 181 323 6.4E-15 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 SUPERFAMILY SSF53850 43 130 3.11E-51 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 SUPERFAMILY SSF53850 171 428 3.11E-51 T 06-07-2017 APT55_RS14340 a29bbd8b78feac292fbc3cf182f63741 430 Pfam PF13416 Bacterial extracellular solute-binding protein 166 338 3.4E-20 T 06-07-2017 APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 SUPERFAMILY SSF141571 6 167 1.86E-39 T 06-07-2017 APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 Pfam PF00805 Pentapeptide repeats (8 copies) 21 59 1.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 Pfam PF00805 Pentapeptide repeats (8 copies) 115 154 6.4E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 Pfam PF00805 Pentapeptide repeats (8 copies) 231 269 2.4E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 Pfam PF00805 Pentapeptide repeats (8 copies) 186 224 1.2E-13 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 Pfam PF00805 Pentapeptide repeats (8 copies) 76 113 5.1E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21955 b5b0fb6fa6991446532caf1654615713 290 SUPERFAMILY SSF141571 139 274 5.1E-35 T 06-07-2017 APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 SUPERFAMILY SSF47384 185 253 1.65E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 SUPERFAMILY SSF55874 253 406 1.3E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 303 403 2.2E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 SMART SM00387 299 405 5.8E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 Gene3D G3DSA:3.30.565.10 258 405 4.7E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 402 1.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 350 1.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS15670 4671343ddb52693fa2f1a25a27e345e3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 383 1.5E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS22620 9f6781ccb78ebe93b5407b848a1558da 209 Gene3D G3DSA:3.30.160.100 1 100 2.1E-32 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 APT55_RS22620 9f6781ccb78ebe93b5407b848a1558da 209 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 97 2.2E-28 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 APT55_RS22620 9f6781ccb78ebe93b5407b848a1558da 209 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 127 181 4.3E-26 T 06-07-2017 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal APT55_RS22620 9f6781ccb78ebe93b5407b848a1558da 209 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 104 3.1E-30 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 APT55_RS22620 9f6781ccb78ebe93b5407b848a1558da 209 SUPERFAMILY SSF69754 2 107 9.55E-31 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 APT55_RS12890 6f5c5f26a4330467f2955a211c0b4b5d 81 PRINTS PR01217 Proline rich extensin signature 2 18 1.2E-13 T 06-07-2017 APT55_RS12890 6f5c5f26a4330467f2955a211c0b4b5d 81 PRINTS PR01217 Proline rich extensin signature 22 34 1.2E-13 T 06-07-2017 APT55_RS12890 6f5c5f26a4330467f2955a211c0b4b5d 81 PRINTS PR01217 Proline rich extensin signature 37 58 1.2E-13 T 06-07-2017 APT55_RS24015 eec03629e79a079ba707c426e20bfc5c 261 Gene3D G3DSA:3.90.1140.10 44 251 2.4E-12 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS24015 eec03629e79a079ba707c426e20bfc5c 261 SUPERFAMILY SSF55144 14 256 9.77E-45 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS24615 7b095c2df797074208f4de7a1db9694d 312 SUPERFAMILY SSF53448 5 236 1.29E-53 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24615 7b095c2df797074208f4de7a1db9694d 312 Pfam PF00535 Glycosyl transferase family 2 7 116 1.5E-28 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS24615 7b095c2df797074208f4de7a1db9694d 312 Gene3D G3DSA:3.90.550.10 6 231 1.2E-49 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 167 243 2.6E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 SMART SM00448 15 131 1.4E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 SUPERFAMILY SSF52172 14 199 5.81E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 Gene3D G3DSA:1.10.10.10 145 243 6.1E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 Pfam PF00072 Response regulator receiver domain 17 130 1.2E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 Gene3D G3DSA:3.40.50.2300 12 144 8.5E-41 T 06-07-2017 APT55_RS05910 676ae6924a32f507298a55e9ee860d18 244 SMART SM00862 167 243 1.2E-29 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS01250 99c941646079cdd61f24a4d1f6322cd8 237 SUPERFAMILY SSF53474 4 234 5.31E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01250 99c941646079cdd61f24a4d1f6322cd8 237 Pfam PF01738 Dienelactone hydrolase family 15 234 7.7E-59 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 APT55_RS01250 99c941646079cdd61f24a4d1f6322cd8 237 Gene3D G3DSA:3.40.50.1820 2 234 3.4E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS19950 7483de4ddcf7c836aa6ba484b38e9052 209 SUPERFAMILY SSF55469 15 203 5.5E-47 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS19950 7483de4ddcf7c836aa6ba484b38e9052 209 Gene3D G3DSA:3.40.109.10 17 203 2.0E-50 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS19950 7483de4ddcf7c836aa6ba484b38e9052 209 Pfam PF00881 Nitroreductase family 24 168 2.0E-20 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS15465 f321634810d98cd6a3e7a788b5e593df 268 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 115 244 3.4E-43 T 06-07-2017 IPR003709 Peptidase M15B GO:0006508|GO:0008233 APT55_RS15465 f321634810d98cd6a3e7a788b5e593df 268 SUPERFAMILY SSF55166 108 250 6.28E-34 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 SUPERFAMILY SSF141571 816 974 7.06E-43 T 06-07-2017 APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 SUPERFAMILY SSF52540 299 518 2.19E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 Pfam PF05729 NACHT domain 307 461 8.2E-8 T 06-07-2017 APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 Pfam PF00805 Pentapeptide repeats (8 copies) 898 935 2.5E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 Pfam PF00805 Pentapeptide repeats (8 copies) 858 896 5.9E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02000 c331db7dec6a0a4847a11a3da51421e5 1004 Pfam PF00805 Pentapeptide repeats (8 copies) 819 857 3.2E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 Pfam PF00886 Ribosomal protein S16 8 64 4.9E-20 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 76 3.0E-31 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 SUPERFAMILY SSF54565 1 80 1.83E-27 T 06-07-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 Gene3D G3DSA:3.30.1320.10 1 80 3.4E-29 T 06-07-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 06-07-2017 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS14470 4e7c3f93eadf2a79e77a41b48e01bc4a 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 74 22.721 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS12470 30a5e38c4f23efab0d3005dcb6661b19 397 Gene3D G3DSA:3.40.50.300 13 199 4.0E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12470 30a5e38c4f23efab0d3005dcb6661b19 397 Pfam PF13401 AAA domain 32 155 2.0E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12470 30a5e38c4f23efab0d3005dcb6661b19 397 Pfam PF13538 UvrD-like helicase C-terminal domain 328 373 1.3E-7 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain APT55_RS12470 30a5e38c4f23efab0d3005dcb6661b19 397 Gene3D G3DSA:3.40.50.300 200 378 8.4E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12470 30a5e38c4f23efab0d3005dcb6661b19 397 SUPERFAMILY SSF52540 12 378 3.6E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02640 692405288827f5f59fbb1f997c80a0a6 176 SMART SM00260 25 169 3.2E-24 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02640 692405288827f5f59fbb1f997c80a0a6 176 SUPERFAMILY SSF50341 36 173 1.44E-24 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS02640 692405288827f5f59fbb1f997c80a0a6 176 Pfam PF01584 CheW-like domain 38 172 6.9E-27 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 95 115 6.2E-27 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 267 287 6.2E-27 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 59 73 6.2E-27 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 244 262 6.2E-27 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 225 242 6.2E-27 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 Pfam PF01555 DNA methylase 60 280 4.5E-39 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 63 69 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 Gene3D G3DSA:3.40.50.150 42 306 2.1E-58 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12315 c2075f07a3d17bbe0efe53dde6d87298 320 SUPERFAMILY SSF53335 44 290 2.18E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 SUPERFAMILY SSF52402 1 153 2.01E-32 T 06-07-2017 APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 PRINTS PR01438 Universal stress protein signature 132 154 5.1E-13 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 PRINTS PR01438 Universal stress protein signature 2 20 5.1E-13 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 PRINTS PR01438 Universal stress protein signature 114 126 5.1E-13 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 Gene3D G3DSA:3.40.50.620 1 153 7.3E-35 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS06670 ed08624ecde23780535fb6612b77e402 172 Pfam PF00582 Universal stress protein family 1 153 1.4E-28 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS30700 84481f1829b4d36222bb287b8067fa88 251 SUPERFAMILY SSF53474 3 243 7.08E-53 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30700 84481f1829b4d36222bb287b8067fa88 251 Gene3D G3DSA:3.40.50.1820 3 123 2.7E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30700 84481f1829b4d36222bb287b8067fa88 251 Gene3D G3DSA:3.40.50.1820 178 244 2.7E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS30700 84481f1829b4d36222bb287b8067fa88 251 Pfam PF00975 Thioesterase domain 18 240 2.6E-52 T 06-07-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 SUPERFAMILY SSF51338 17 77 1.87E-8 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 Pfam PF01979 Amidohydrolase family 58 424 6.3E-61 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 SUPERFAMILY SSF51556 61 376 4.22E-95 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 SUPERFAMILY SSF51338 332 452 1.48E-28 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 Gene3D G3DSA:3.20.20.140 64 385 9.9E-109 T 06-07-2017 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 Gene3D G3DSA:2.30.40.10 386 428 8.7E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23280 f5c4f382a8e9a42bf1f897a119955bcd 452 Gene3D G3DSA:2.30.40.10 13 63 8.7E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS09590 080c8bd7b236b49d07947db1a41c5f5e 449 SUPERFAMILY SSF49879 28 121 2.3E-22 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS09590 080c8bd7b236b49d07947db1a41c5f5e 449 SMART SM00240 34 94 8.4E-13 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS09590 080c8bd7b236b49d07947db1a41c5f5e 449 Gene3D G3DSA:2.60.200.20 26 117 5.6E-20 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS09590 080c8bd7b236b49d07947db1a41c5f5e 449 Pfam PF00498 FHA domain 36 109 1.2E-17 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS09590 080c8bd7b236b49d07947db1a41c5f5e 449 Pfam PF13367 Protease prsW family 212 429 1.1E-47 T 06-07-2017 IPR026898 Protease PrsW GO:0008233 APT55_RS03425 6bc3ce582d2c68ac7a4773c9d21c63b5 192 Gene3D G3DSA:3.90.1570.10 4 184 2.6E-43 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS03425 6bc3ce582d2c68ac7a4773c9d21c63b5 192 Pfam PF05685 Putative restriction endonuclease 11 180 2.2E-30 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS03425 6bc3ce582d2c68ac7a4773c9d21c63b5 192 SUPERFAMILY SSF52980 2 184 2.84E-47 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 Gene3D G3DSA:3.40.640.10 16 249 5.1E-93 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 Pfam PF00266 Aminotransferase class-V 4 359 5.2E-81 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 Gene3D G3DSA:3.90.1150.10 250 364 9.2E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 PIRSF PIRSF005572 1 373 2.4E-125 T 06-07-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 192 211 - T 06-07-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT55_RS08690 962834d9b97f51febdee81f60ec5c6af 373 SUPERFAMILY SSF53383 3 368 5.59E-103 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS06565 27aaef9496d7123f7793cef43013c874 318 Pfam PF05050 Methyltransferase FkbM domain 46 201 1.3E-16 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS06565 27aaef9496d7123f7793cef43013c874 318 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 43 176 1.8E-15 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS06565 27aaef9496d7123f7793cef43013c874 318 Gene3D G3DSA:3.40.50.150 44 203 8.2E-18 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06565 27aaef9496d7123f7793cef43013c874 318 SUPERFAMILY SSF53335 44 205 4.75E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05120 b8c28b633a4f7274b692086544af4adc 432 SUPERFAMILY SSF103473 13 420 6.45E-39 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS05120 b8c28b633a4f7274b692086544af4adc 432 Pfam PF13347 MFS/sugar transport protein 13 426 5.6E-61 T 06-07-2017 APT55_RS05120 b8c28b633a4f7274b692086544af4adc 432 Gene3D G3DSA:1.20.1250.20 11 208 1.8E-13 T 06-07-2017 APT55_RS05120 b8c28b633a4f7274b692086544af4adc 432 Gene3D G3DSA:1.20.1250.20 226 420 6.5E-16 T 06-07-2017 APT55_RS29770 f46a0e39804d12faf2ab13f08f17e5a6 81 Gene3D G3DSA:3.40.50.720 17 67 1.5E-4 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 6 127 26.844 T 06-07-2017 IPR002930 Glycine cleavage system H-protein APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 5 127 2.2E-46 T 06-07-2017 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 Gene3D G3DSA:2.40.50.100 8 127 8.5E-47 T 06-07-2017 APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 Pfam PF01597 Glycine cleavage H-protein 9 127 3.3E-40 T 06-07-2017 IPR002930 Glycine cleavage system H-protein APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 SUPERFAMILY SSF51230 5 127 1.18E-41 T 06-07-2017 IPR011053 Single hybrid motif APT55_RS11395 588275b75cd855337d9b2dd778420f3d 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT55_RS21850 644aadec95f9a32341cb7ba010e74b82 226 SUPERFAMILY SSF111126 26 194 2.88E-36 T 06-07-2017 IPR024096 NO signalling/Golgi transport ligand-binding domain APT55_RS21850 644aadec95f9a32341cb7ba010e74b82 226 Pfam PF02830 V4R domain 136 194 6.8E-19 T 06-07-2017 IPR004096 4-vinyl reductase, 4VR APT55_RS21850 644aadec95f9a32341cb7ba010e74b82 226 Gene3D G3DSA:3.30.1380.20 54 195 2.1E-26 T 06-07-2017 APT55_RS21850 644aadec95f9a32341cb7ba010e74b82 226 SMART SM00989 134 196 1.6E-16 T 06-07-2017 IPR004096 4-vinyl reductase, 4VR APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 SUPERFAMILY SSF53335 3 221 7.84E-46 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 1 230 32.052 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 Pfam PF01209 ubiE/COQ5 methyltransferase family 2 225 1.2E-53 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 17 32 - T 06-07-2017 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 Gene3D G3DSA:3.40.50.150 5 218 7.3E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 6 230 2.3E-68 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT55_RS12460 c1a28b7bd3cd68d2baa763c665cc881d 230 Hamap MF_01982 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 5 230 52.747 T 06-07-2017 IPR032904 2-phytyl-1,4-naphtoquinone methyltransferase MenG GO:0042372|GO:0052624 APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 SUPERFAMILY SSF50249 1 65 2.36E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 Pfam PF00313 'Cold-shock' DNA-binding domain 3 63 2.7E-9 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 Pfam PF06961 Protein of unknown function (DUF1294) 127 180 3.8E-23 T 06-07-2017 IPR010718 Protein of unknown function DUF1294 APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 SMART SM00357 3 67 8.1E-5 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 APT55_RS20685 fc591363a79c5eb47938d924c82bfe6a 210 Gene3D G3DSA:2.40.50.140 1 64 2.4E-15 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS14900 a1f63743b646c9049df9497933041f14 218 SUPERFAMILY SSF52540 1 215 7.7E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14900 a1f63743b646c9049df9497933041f14 218 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 06-07-2017 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APT55_RS14900 a1f63743b646c9049df9497933041f14 218 Gene3D G3DSA:3.40.50.300 3 213 1.1E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14900 a1f63743b646c9049df9497933041f14 218 Pfam PF02223 Thymidylate kinase 8 205 2.2E-50 T 06-07-2017 APT55_RS14900 a1f63743b646c9049df9497933041f14 218 Hamap MF_00165 Thymidylate kinase [tmk]. 4 213 30.597 T 06-07-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APT55_RS14900 a1f63743b646c9049df9497933041f14 218 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 205 4.3E-57 T 06-07-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APT55_RS10855 417d9ed8f542ad402ed5b0f6468f7d59 180 Pfam PF05258 Protein of unknown function (DUF721) 20 91 3.3E-14 T 06-07-2017 IPR007922 Protein of unknown function DUF721/UPF0232 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 SUPERFAMILY SSF52768 3 300 2.97E-87 T 06-07-2017 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 PRINTS PR01270 Histone deacetylase superfamily signature 121 144 4.1E-14 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 PRINTS PR01270 Histone deacetylase superfamily signature 153 168 4.1E-14 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 PRINTS PR01270 Histone deacetylase superfamily signature 234 244 4.1E-14 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 Gene3D G3DSA:3.40.800.20 3 300 5.0E-86 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS14735 6eb875040fcfc352258ddeb86396b866 302 Pfam PF00850 Histone deacetylase domain 19 296 7.2E-67 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT55_RS27450 206c88a4297ee6d60b9a93bd78720cbe 278 SUPERFAMILY SSF52540 7 80 4.38E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27450 206c88a4297ee6d60b9a93bd78720cbe 278 SUPERFAMILY SSF52540 119 154 4.38E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01385 a17be4c61e98ee46939cfcca4fac2df6 122 SUPERFAMILY SSF54909 1 113 8.04E-29 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS01385 a17be4c61e98ee46939cfcca4fac2df6 122 Gene3D G3DSA:3.30.70.1060 1 113 1.9E-35 T 06-07-2017 APT55_RS01385 a17be4c61e98ee46939cfcca4fac2df6 122 Pfam PF03795 YCII-related domain 1 113 5.5E-22 T 06-07-2017 IPR005545 YCII-related APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PRINTS PR01806 Virulence factor MviN signature 393 412 2.3E-13 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PRINTS PR01806 Virulence factor MviN signature 41 60 2.3E-13 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PRINTS PR01806 Virulence factor MviN signature 445 462 2.3E-13 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PRINTS PR01806 Virulence factor MviN signature 180 201 2.3E-13 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PRINTS PR01806 Virulence factor MviN signature 295 321 2.3E-13 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 PIRSF PIRSF002869 6 550 4.1E-93 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 Pfam PF03023 MviN-like protein 36 509 3.3E-105 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS31865 f765d0806d64ef7debd5e9ec79b508e2 555 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 10 543 1.4E-122 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ APT55_RS25755 f77c0790bb9664ae7fe292ac0eab2e65 264 Pfam PF12705 PD-(D/E)XK nuclease superfamily 4 238 4.2E-33 T 06-07-2017 APT55_RS25755 f77c0790bb9664ae7fe292ac0eab2e65 264 SUPERFAMILY SSF52980 5 187 1.02E-10 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Pfam PF00535 Glycosyl transferase family 2 4 159 2.4E-22 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SUPERFAMILY SSF48452 180 266 2.05E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SUPERFAMILY SSF53448 3 169 4.38E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Pfam PF13414 TPR repeat 321 357 2.6E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Pfam PF13181 Tetratricopeptide repeat 278 307 6.9E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Pfam PF13181 Tetratricopeptide repeat 239 266 0.029 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Gene3D G3DSA:1.25.40.10 179 376 6.4E-43 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 Gene3D G3DSA:3.90.550.10 2 105 4.8E-16 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SUPERFAMILY SSF48452 244 375 2.53E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SMART SM00028 275 308 0.067 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SMART SM00028 238 271 3.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SMART SM00028 309 342 1.5E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SMART SM00028 201 234 77.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01230 ed98c7b467c7d908976fb03d46aa7781 394 SMART SM00028 343 376 2.8E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20925 e9faf7e11c5b4a2dc79a51695e7f29f8 112 Gene3D G3DSA:1.10.10.10 18 79 2.0E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS20925 e9faf7e11c5b4a2dc79a51695e7f29f8 112 Pfam PF04255 Protein of unknown function (DUF433) 21 64 9.6E-12 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS20925 e9faf7e11c5b4a2dc79a51695e7f29f8 112 SUPERFAMILY SSF46689 18 77 9.14E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS29700 313fabe4d31646153a96eef62bd1d5e0 67 SUPERFAMILY SSF143100 1 58 3.66E-9 T 06-07-2017 APT55_RS17870 614c0a41def57ee0eb5c416714567234 280 Pfam PF01435 Peptidase family M48 69 252 2.0E-34 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS17870 614c0a41def57ee0eb5c416714567234 280 Gene3D G3DSA:3.30.2010.10 68 147 1.1E-14 T 06-07-2017 APT55_RS01425 0f6b7ea5d6716eeec211765e95ad7b51 156 Gene3D G3DSA:2.60.450.10 21 126 2.1E-17 T 06-07-2017 APT55_RS01425 0f6b7ea5d6716eeec211765e95ad7b51 156 Pfam PF03968 OstA-like protein 66 111 2.6E-6 T 06-07-2017 IPR005653 Organic solvent tolerance-like, N-terminal APT55_RS11870 84e08ad7d31dd367ef3427e1b89cfaf7 249 Gene3D G3DSA:3.30.420.130 113 231 9.1E-33 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11870 84e08ad7d31dd367ef3427e1b89cfaf7 249 Pfam PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal 10 103 4.7E-29 T 06-07-2017 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal APT55_RS11870 84e08ad7d31dd367ef3427e1b89cfaf7 249 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 127 217 1.5E-12 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11870 84e08ad7d31dd367ef3427e1b89cfaf7 249 SUPERFAMILY SSF53146 113 231 4.71E-28 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS22870 f5100c363ea2385cc136fc8f6feff7a5 222 SUPERFAMILY SSF56214 103 204 2.79E-19 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 APT55_RS22870 f5100c363ea2385cc136fc8f6feff7a5 222 Gene3D G3DSA:3.90.470.20 114 199 3.5E-20 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 APT55_RS22870 f5100c363ea2385cc136fc8f6feff7a5 222 Gene3D G3DSA:3.90.470.20 19 113 3.7E-29 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 APT55_RS22870 f5100c363ea2385cc136fc8f6feff7a5 222 SUPERFAMILY SSF56214 8 94 2.17E-20 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 APT55_RS22870 f5100c363ea2385cc136fc8f6feff7a5 222 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 103 197 1.5E-14 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 SUPERFAMILY SSF141571 56 204 1.77E-38 T 06-07-2017 APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 271 310 5.9E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 331 370 2.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 472 506 2.6E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 176 205 7.3E-5 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 142 174 1.1E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 75 112 5.6E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 403 436 7.1E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 Pfam PF00805 Pentapeptide repeats (8 copies) 208 245 1.3E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 SUPERFAMILY SSF141571 288 423 3.27E-32 T 06-07-2017 APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 SUPERFAMILY SSF141571 387 515 3.01E-26 T 06-07-2017 APT55_RS04790 5efca844769e1a30a8fb65fbb49e0516 676 SUPERFAMILY SSF141571 208 323 3.01E-29 T 06-07-2017 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 Pfam PF00067 Cytochrome P450 24 443 2.4E-76 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 311 329 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 251 268 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 271 297 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 352 376 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 384 394 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00463 E-class P450 group I signature 394 417 3.2E-20 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 387 396 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 SUPERFAMILY SSF48264 10 446 3.14E-96 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 Gene3D G3DSA:1.10.630.10 9 446 4.1E-105 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00385 P450 superfamily signature 312 323 4.7E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00385 P450 superfamily signature 394 405 4.7E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00385 P450 superfamily signature 262 279 4.7E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS27210 123d26a41109d58eef33166f576300ab 458 PRINTS PR00385 P450 superfamily signature 385 394 4.7E-13 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT55_RS07945 0fdd35acb22e633b0af509fa63cbb1c0 268 Pfam PF01987 Mitochondrial biogenesis AIM24 51 251 5.5E-29 T 06-07-2017 IPR002838 Mitochondrial biogenesis protein AIM24 APT55_RS07945 0fdd35acb22e633b0af509fa63cbb1c0 268 Gene3D G3DSA:3.60.160.10 51 259 4.1E-41 T 06-07-2017 IPR002838 Mitochondrial biogenesis protein AIM24 APT55_RS07945 0fdd35acb22e633b0af509fa63cbb1c0 268 SUPERFAMILY SSF51219 46 253 3.4E-44 T 06-07-2017 IPR016031 Tryptophan RNA-binding attenuator protein-like domain APT55_RS21330 3ca35d715ea2f25957f51989114f9fe9 319 SUPERFAMILY SSF53756 1 317 4.13E-58 T 06-07-2017 APT55_RS21330 3ca35d715ea2f25957f51989114f9fe9 319 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 308 4.5E-20 T 06-07-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 APT55_RS21330 3ca35d715ea2f25957f51989114f9fe9 319 Gene3D G3DSA:3.40.50.2000 1 145 6.0E-35 T 06-07-2017 APT55_RS21330 3ca35d715ea2f25957f51989114f9fe9 319 Gene3D G3DSA:3.40.50.2000 161 316 7.4E-18 T 06-07-2017 APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 Gene3D G3DSA:2.30.120.10 281 342 8.5E-24 T 06-07-2017 APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 SUPERFAMILY SSF56235 47 712 6.95E-188 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 Pfam PF01804 Penicillin amidase 54 703 1.7E-138 T 06-07-2017 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 Gene3D G3DSA:1.10.439.10 42 173 5.6E-37 T 06-07-2017 IPR023343 Penicillin amidase type, domain1 GO:0016811 APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 Gene3D G3DSA:3.60.20.10 174 280 2.5E-93 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS30695 828302a3d997e6bf05bbe78060ec2a6e 713 Gene3D G3DSA:3.60.20.10 353 550 2.5E-93 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS14060 d25fdf581b2fb1054b1a6917243bc567 377 Pfam PF01609 Transposase DDE domain 104 346 6.3E-23 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS14060 d25fdf581b2fb1054b1a6917243bc567 377 Pfam PF13808 DDE_Tnp_1-associated 11 97 3.0E-36 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 SUPERFAMILY SSF52172 3 141 3.13E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 SUPERFAMILY SSF46894 169 239 1.84E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 Gene3D G3DSA:1.10.10.10 128 239 4.2E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 1.6E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 1.6E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 1.6E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 Gene3D G3DSA:3.40.50.2300 2 127 1.2E-31 T 06-07-2017 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 ProSitePatterns PS00622 LuxR-type HTH domain signature. 193 220 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 Pfam PF00072 Response regulator receiver domain 6 123 2.1E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 SMART SM00421 176 233 5.0E-25 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 SMART SM00448 4 123 7.7E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18875 9cb8c03bfb8a38a2d0b13101fd525d19 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 232 1.0E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS14285 5aa5e89c3973fd87af2315df6d31816e 239 Pfam PF03713 Domain of unknown function (DUF305) 66 229 8.8E-45 T 06-07-2017 IPR005183 Domain of unknown function DUF305 APT55_RS14285 5aa5e89c3973fd87af2315df6d31816e 239 Gene3D G3DSA:1.20.1260.10 63 233 6.3E-48 T 06-07-2017 IPR012347 Ferritin-related APT55_RS24785 707040b148793cb742665918de142864 175 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 171 33.768 T 06-07-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT55_RS24785 707040b148793cb742665918de142864 175 Gene3D G3DSA:3.30.230.10 83 166 1.4E-27 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT55_RS24785 707040b148793cb742665918de142864 175 Gene3D G3DSA:3.30.160.20 16 79 6.6E-24 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain APT55_RS24785 707040b148793cb742665918de142864 175 Pfam PF00333 Ribosomal protein S5, N-terminal domain 18 82 1.6E-22 T 06-07-2017 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT55_RS24785 707040b148793cb742665918de142864 175 Pfam PF03719 Ribosomal protein S5, C-terminal domain 98 165 1.2E-25 T 06-07-2017 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 APT55_RS24785 707040b148793cb742665918de142864 175 ProSitePatterns PS00585 Ribosomal protein S5 signature. 35 67 - T 06-07-2017 IPR018192 Ribosomal protein S5, N-terminal, conserved site APT55_RS24785 707040b148793cb742665918de142864 175 SUPERFAMILY SSF54768 15 83 4.19E-20 T 06-07-2017 APT55_RS24785 707040b148793cb742665918de142864 175 SUPERFAMILY SSF54211 87 166 7.33E-23 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS24785 707040b148793cb742665918de142864 175 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 15 170 1.6E-63 T 06-07-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 Pfam PF08402 TOBE domain 271 340 9.7E-10 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 Pfam PF00005 ABC transporter 20 161 2.0E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 Gene3D G3DSA:2.40.50.140 274 333 1.2E-10 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 SMART SM00382 28 211 3.9E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 SUPERFAMILY SSF52540 4 244 9.45E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 Gene3D G3DSA:3.40.50.300 5 238 3.7E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15090 9f60114a78fd8839ed50ad86cf633b8c 349 SUPERFAMILY SSF50331 236 348 1.38E-22 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 Pfam PF01165 Ribosomal protein S21 3 56 6.1E-19 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.0E-9 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.0E-9 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.0E-9 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.0E-9 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 60 1.0E-12 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 19.33 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00205 e717706445829eb3c0f94b284e0d4b1b 62 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 58 4.6E-19 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS19775 5fc1ad2a2c7c46885dd15a2af62c9ce1 307 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 61 304 1.9E-37 T 06-07-2017 IPR020049 Protein of unknown function DUF2184 APT55_RS19775 5fc1ad2a2c7c46885dd15a2af62c9ce1 307 PIRSF PIRSF029202 2 304 1.6E-31 T 06-07-2017 IPR020049 Protein of unknown function DUF2184 APT55_RS19010 5730f416f12e5fdd8673e8f03f11b8f8 146 Pfam PF01475 Ferric uptake regulator family 26 141 7.3E-22 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT55_RS19010 5730f416f12e5fdd8673e8f03f11b8f8 146 SUPERFAMILY SSF46785 17 145 1.08E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19010 5730f416f12e5fdd8673e8f03f11b8f8 146 Gene3D G3DSA:1.10.10.10 16 90 1.3E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 9.1E-12 T 06-07-2017 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 92 112 9.1E-12 T 06-07-2017 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 9.1E-12 T 06-07-2017 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 9.1E-12 T 06-07-2017 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 9.1E-12 T 06-07-2017 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 SUPERFAMILY SSF53383 1 385 3.9E-122 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 Gene3D G3DSA:3.40.640.10 44 274 4.8E-80 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 Pfam PF00155 Aminotransferase class I and II 31 380 1.1E-75 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 Gene3D G3DSA:3.90.1150.10 275 386 4.1E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS08455 6108055a0fb99c17c9900c1167438fc5 388 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT55_RS11380 037e0ecda3d22bef5e6655956929c391 201 PIRSF PIRSF037081 1 196 2.4E-43 T 06-07-2017 IPR017101 P-loop ATP/GTP binding protein, All4644, predicted APT55_RS11380 037e0ecda3d22bef5e6655956929c391 201 Gene3D G3DSA:3.40.50.300 1 151 4.8E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11380 037e0ecda3d22bef5e6655956929c391 201 SUPERFAMILY SSF52540 1 144 1.4E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11380 037e0ecda3d22bef5e6655956929c391 201 Pfam PF13671 AAA domain 1 150 2.4E-17 T 06-07-2017 APT55_RS30250 49619759bd23f8c17f7e55a8365f42be 136 SUPERFAMILY SSF54593 1 133 2.26E-38 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS30250 49619759bd23f8c17f7e55a8365f42be 136 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 130 1.8E-10 T 06-07-2017 IPR028973 PhnB-like APT55_RS30250 49619759bd23f8c17f7e55a8365f42be 136 Gene3D G3DSA:3.10.180.10 7 134 2.3E-44 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 PIRSF PIRSF005739 2 330 5.4E-65 T 06-07-2017 IPR016461 O-methyltransferase COMT-type GO:0008168 APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 Gene3D G3DSA:1.10.10.10 8 96 4.7E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 SUPERFAMILY SSF46785 8 92 3.43E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 Pfam PF16864 Dimerisation domain 12 87 2.3E-10 T 06-07-2017 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 SUPERFAMILY SSF53335 95 328 1.56E-51 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 Gene3D G3DSA:3.40.50.150 97 330 1.0E-72 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22205 ebd3f4e5e6785bd2171ae6760f04c1f0 331 Pfam PF00891 O-methyltransferase 118 313 1.5E-52 T 06-07-2017 IPR001077 O-methyltransferase, family 2 GO:0008171 APT55_RS00905 bcc7c06dee84661b51999946c16a3288 416 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 32 413 1.4E-35 T 06-07-2017 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain APT55_RS00905 bcc7c06dee84661b51999946c16a3288 416 SUPERFAMILY SSF56059 33 167 1.31E-24 T 06-07-2017 APT55_RS00905 bcc7c06dee84661b51999946c16a3288 416 SUPERFAMILY SSF56059 276 412 1.31E-24 T 06-07-2017 APT55_RS16405 070c14a8f20712f215651dd2255ac6c3 300 Gene3D G3DSA:2.60.200.30 158 265 1.7E-36 T 06-07-2017 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS16405 070c14a8f20712f215651dd2255ac6c3 300 Pfam PF01513 ATP-NAD kinase 5 276 1.8E-63 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS16405 070c14a8f20712f215651dd2255ac6c3 300 Hamap MF_00361 NAD kinase [nadK]. 2 291 29.873 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS16405 070c14a8f20712f215651dd2255ac6c3 300 SUPERFAMILY SSF111331 4 296 9.29E-83 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain APT55_RS16405 070c14a8f20712f215651dd2255ac6c3 300 Gene3D G3DSA:3.40.50.10330 3 157 3.9E-31 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS00765 8ebd770ac7862b25316acefd0365f58c 1225 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 1 1217 0.0 T 06-07-2017 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 APT55_RS00765 8ebd770ac7862b25316acefd0365f58c 1225 Pfam PF02514 CobN/Magnesium Chelatase 140 1202 0.0 T 06-07-2017 IPR003672 CobN/magnesium chelatase GO:0009058 APT55_RS16785 d87aab5a43c922f850f5081d7bb837e2 227 Gene3D G3DSA:3.40.50.850 16 221 1.9E-65 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS16785 d87aab5a43c922f850f5081d7bb837e2 227 Pfam PF00857 Isochorismatase family 20 207 1.1E-41 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS16785 d87aab5a43c922f850f5081d7bb837e2 227 SUPERFAMILY SSF52499 8 218 1.02E-52 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS06655 05867d15fac96188264055483fd6f7c0 149 Gene3D G3DSA:2.30.110.10 5 141 1.4E-29 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS06655 05867d15fac96188264055483fd6f7c0 149 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 10 141 3.4E-21 T 06-07-2017 IPR024747 Pyridoxamine 5'-phosphate oxidase-related APT55_RS06655 05867d15fac96188264055483fd6f7c0 149 SUPERFAMILY SSF50475 3 142 2.06E-26 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 425 42.134 T 06-07-2017 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 SUPERFAMILY SSF51161 292 431 4.19E-23 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 208 218 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 SUPERFAMILY SSF53448 376 392 3.29E-79 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 SUPERFAMILY SSF53448 3 276 3.29E-79 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 Pfam PF00483 Nucleotidyl transferase 6 274 8.3E-75 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 Gene3D G3DSA:3.90.550.10 4 345 8.3E-75 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 4 395 1.9E-147 T 06-07-2017 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 APT55_RS11385 4bd1e9d7e1577dd809bd0cbdc62cd6f6 431 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 96 104 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 APT55_RS22810 63260eb0e88b7c6f366c3a1193175964 247 Gene3D G3DSA:1.10.10.10 161 236 3.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22810 63260eb0e88b7c6f366c3a1193175964 247 Gene3D G3DSA:3.90.79.10 17 156 6.9E-40 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS22810 63260eb0e88b7c6f366c3a1193175964 247 SUPERFAMILY SSF46785 168 236 2.01E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22810 63260eb0e88b7c6f366c3a1193175964 247 SUPERFAMILY SSF55811 22 165 2.84E-33 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS22810 63260eb0e88b7c6f366c3a1193175964 247 Pfam PF00293 NUDIX domain 31 152 1.4E-11 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 APT55_RS11135 044f1e6a779b044e7d19721ecad8eb7a 238 SUPERFAMILY SSF53335 28 216 5.81E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11135 044f1e6a779b044e7d19721ecad8eb7a 238 Gene3D G3DSA:3.40.50.150 44 216 2.3E-10 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11135 044f1e6a779b044e7d19721ecad8eb7a 238 Pfam PF05050 Methyltransferase FkbM domain 51 216 1.2E-15 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS14825 45b25e265faaca6ab4191837984ef6e1 199 Gene3D G3DSA:3.90.420.10 14 195 9.7E-48 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS14825 45b25e265faaca6ab4191837984ef6e1 199 Pfam PF00174 Oxidoreductase molybdopterin binding domain 33 178 4.2E-34 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS14825 45b25e265faaca6ab4191837984ef6e1 199 SUPERFAMILY SSF56524 5 196 8.89E-60 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 Gene3D G3DSA:3.40.50.300 5 127 8.7E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 Pfam PF00350 Dynamin family 90 296 2.5E-4 T 06-07-2017 IPR022812 Dynamin superfamily APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 Gene3D G3DSA:3.40.50.300 153 154 3.5E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 Gene3D G3DSA:3.40.50.300 263 316 3.5E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 SUPERFAMILY SSF52540 261 347 6.47E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27440 3aa1e5b7733cc62eb0b499b91ae161b5 842 SUPERFAMILY SSF52540 68 135 6.47E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23255 6c916e364024179ceafa227228e1bf5f 372 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 72 87 - T 06-07-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23255 6c916e364024179ceafa227228e1bf5f 372 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 231 244 - T 06-07-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23255 6c916e364024179ceafa227228e1bf5f 372 Pfam PF00146 NADH dehydrogenase 34 360 1.3E-115 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23255 6c916e364024179ceafa227228e1bf5f 372 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 26 366 24.005 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS08295 3a4fed31bc544c48ed3f801e31bb2a56 349 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 138 344 9.5E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08295 3a4fed31bc544c48ed3f801e31bb2a56 349 Gene3D G3DSA:1.10.3720.10 115 341 4.6E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08295 3a4fed31bc544c48ed3f801e31bb2a56 349 SUPERFAMILY SSF161098 115 327 2.22E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS05995 677d06fc346adb55581264651ac9aab5 70 Pfam PF10929 Protein of unknown function (DUF2811) 7 63 3.9E-22 T 06-07-2017 IPR021231 Protein of unknown function DUF2811 APT55_RS11010 34910a0a4d1e7194179463157b2fe314 237 Pfam PF09992 Phosphodiester glycosidase 30 236 1.4E-29 T 06-07-2017 IPR018711 Phosphodiester glycosidase APT55_RS16000 9616a8ee79ff19beb9a10b4d07145e91 353 SUPERFAMILY SSF56349 197 339 8.83E-11 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS16000 9616a8ee79ff19beb9a10b4d07145e91 353 Gene3D G3DSA:1.10.443.10 203 342 2.1E-7 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS14075 666c44161ec9c12b9d0cf94ece3821fd 94 Pfam PF06967 Mo-dependent nitrogenase C-terminus 12 93 8.0E-40 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 Pfam PF00582 Universal stress protein family 553 680 2.9E-5 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 Pfam PF00582 Universal stress protein family 414 545 1.3E-12 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 Gene3D G3DSA:3.40.50.620 552 680 2.4E-9 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 Gene3D G3DSA:3.40.50.620 414 545 1.7E-15 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 Pfam PF00999 Sodium/hydrogen exchanger family 17 385 3.5E-58 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 SUPERFAMILY SSF52402 553 680 5.11E-8 T 06-07-2017 APT55_RS09250 b099e766f49ae38735d735c681020bc5 696 SUPERFAMILY SSF52402 414 545 7.53E-19 T 06-07-2017 APT55_RS24305 6f7b8f31136075a245ec221c923a498c 582 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 401 573 6.6E-37 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS24305 6f7b8f31136075a245ec221c923a498c 582 SUPERFAMILY SSF53187 398 576 4.71E-43 T 06-07-2017 APT55_RS24305 6f7b8f31136075a245ec221c923a498c 582 Gene3D G3DSA:3.40.630.40 399 577 3.4E-42 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS24305 6f7b8f31136075a245ec221c923a498c 582 SMART SM00646 461 573 2.4E-20 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS24305 6f7b8f31136075a245ec221c923a498c 582 SMART SM00287 222 281 1.1E-5 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS04980 882fd7d88b15da27305b0608ff74c826 540 Pfam PF13529 Peptidase_C39 like family 376 500 8.5E-19 T 06-07-2017 APT55_RS04980 882fd7d88b15da27305b0608ff74c826 540 SUPERFAMILY SSF54001 390 507 2.26E-6 T 06-07-2017 APT55_RS30210 fff0aae3e2f209d52d467134c4247cea 158 SMART SM00347 35 135 1.8E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT55_RS30210 fff0aae3e2f209d52d467134c4247cea 158 Pfam PF12802 MarR family 41 98 2.8E-12 T 06-07-2017 APT55_RS30210 fff0aae3e2f209d52d467134c4247cea 158 Gene3D G3DSA:1.10.10.10 11 147 4.8E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS30210 fff0aae3e2f209d52d467134c4247cea 158 SUPERFAMILY SSF46785 16 147 3.9E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29985 481f01bbfc81a6c0bdee00c325c71f7f 165 SUPERFAMILY SSF56300 13 161 1.82E-33 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS29985 481f01bbfc81a6c0bdee00c325c71f7f 165 Gene3D G3DSA:3.60.21.10 13 155 2.9E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS29985 481f01bbfc81a6c0bdee00c325c71f7f 165 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 13 155 3.3E-27 T 06-07-2017 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 APT55_RS29985 481f01bbfc81a6c0bdee00c325c71f7f 165 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 13 151 6.4E-31 T 06-07-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 103 115 1.1E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 147 166 1.1E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 44 60 1.1E-20 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 Gene3D G3DSA:2.10.109.10 147 193 8.7E-42 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 Gene3D G3DSA:2.10.109.10 40 113 8.7E-42 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 Pfam PF00717 Peptidase S24-like 51 119 5.4E-16 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 ProSitePatterns PS00761 Signal peptidases I signature 3. 152 165 - T 06-07-2017 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 SUPERFAMILY SSF51306 42 193 3.4E-53 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 ProSitePatterns PS00501 Signal peptidases I serine active site. 53 60 - T 06-07-2017 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 ProSitePatterns PS00760 Signal peptidases I lysine active site. 105 117 - T 06-07-2017 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 APT55_RS11170 5c6123b25ce0759e222aef23e99ad5b0 199 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 29 188 2.0E-45 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT55_RS08740 e2eaf4d35dbfd5a7fc92f640f8126501 159 Pfam PF08592 Domain of unknown function (DUF1772) 24 158 1.3E-20 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 APT55_RS25925 66be007593fb97ae930e855a52017274 141 Gene3D G3DSA:3.10.180.10 6 126 8.3E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS25925 66be007593fb97ae930e855a52017274 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 121 3.5E-7 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS25925 66be007593fb97ae930e855a52017274 141 SUPERFAMILY SSF54593 5 126 5.64E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS18080 655338a75cc2e5f88d77292d6bd14e44 420 SMART SM00471 54 183 7.2E-9 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS18080 655338a75cc2e5f88d77292d6bd14e44 420 Gene3D G3DSA:1.10.3210.10 4 256 1.2E-69 T 06-07-2017 IPR006674 HD domain APT55_RS18080 655338a75cc2e5f88d77292d6bd14e44 420 Pfam PF01966 HD domain 58 129 1.4E-12 T 06-07-2017 IPR006674 HD domain APT55_RS18080 655338a75cc2e5f88d77292d6bd14e44 420 SUPERFAMILY SSF109604 2 403 1.38E-96 T 06-07-2017 APT55_RS12140 8ed25c18bfbd52ebcdea0c29e928c3f3 272 Pfam PF01551 Peptidase family M23 165 263 5.1E-28 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS12140 8ed25c18bfbd52ebcdea0c29e928c3f3 272 Gene3D G3DSA:2.60.40.1590 20 108 2.0E-7 T 06-07-2017 APT55_RS12140 8ed25c18bfbd52ebcdea0c29e928c3f3 272 Gene3D G3DSA:2.70.70.10 125 266 6.3E-40 T 06-07-2017 APT55_RS12140 8ed25c18bfbd52ebcdea0c29e928c3f3 272 SUPERFAMILY SSF51261 135 266 2.35E-44 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS12160 b37b10ce899e8e74c52415a0335f134d 121 SUPERFAMILY SSF54427 1 121 1.39E-37 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS12160 b37b10ce899e8e74c52415a0335f134d 121 Gene3D G3DSA:3.10.450.50 1 121 7.7E-56 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS12160 b37b10ce899e8e74c52415a0335f134d 121 Pfam PF11533 Protein of unknown function (DUF3225) 1 121 3.3E-57 T 06-07-2017 IPR024507 Protein of unknown function DUF3225 APT55_RS27030 32bad036647b884caf212776aa027513 656 Gene3D G3DSA:3.40.50.1820 200 322 3.8E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27030 32bad036647b884caf212776aa027513 656 Gene3D G3DSA:3.40.50.1820 60 143 3.8E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27030 32bad036647b884caf212776aa027513 656 Gene3D G3DSA:3.40.50.1820 514 620 3.8E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27030 32bad036647b884caf212776aa027513 656 Pfam PF00561 alpha/beta hydrolase fold 95 261 5.5E-19 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS27030 32bad036647b884caf212776aa027513 656 Pfam PF08386 TAP-like protein 556 639 3.0E-10 T 06-07-2017 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal APT55_RS27030 32bad036647b884caf212776aa027513 656 SUPERFAMILY SSF53474 203 258 3.58E-26 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27030 32bad036647b884caf212776aa027513 656 SUPERFAMILY SSF53474 565 619 3.58E-26 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27030 32bad036647b884caf212776aa027513 656 SUPERFAMILY SSF53474 77 150 3.58E-26 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14160 002f520f1fce3f0f1f9493dad3bd6e99 202 SMART SM00554 100 198 1.7E-34 T 06-07-2017 IPR000782 FAS1 domain APT55_RS14160 002f520f1fce3f0f1f9493dad3bd6e99 202 Gene3D G3DSA:2.30.180.10 65 198 1.1E-42 T 06-07-2017 IPR000782 FAS1 domain APT55_RS14160 002f520f1fce3f0f1f9493dad3bd6e99 202 Pfam PF02469 Fasciclin domain 76 197 1.1E-35 T 06-07-2017 IPR000782 FAS1 domain APT55_RS14160 002f520f1fce3f0f1f9493dad3bd6e99 202 SUPERFAMILY SSF82153 51 198 3.66E-43 T 06-07-2017 IPR000782 FAS1 domain APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 SUPERFAMILY SSF52540 14 255 1.61E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 SMART SM00382 39 248 3.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 Pfam PF00005 ABC transporter 31 183 1.8E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 15 268 1.6E-116 T 06-07-2017 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 APT55_RS10180 2d5c2f1af5950e217d241267dfdd1ce3 268 Gene3D G3DSA:3.40.50.300 6 262 1.1E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16580 5ff09848646e8b937f9830b764424767 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 6 105 27.541 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 7 104 5.0E-47 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 PRINTS PR00971 Ribosomal protein S10 family signature 43 58 1.0E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 PRINTS PR00971 Ribosomal protein S10 family signature 64 78 1.0E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 PRINTS PR00971 Ribosomal protein S10 family signature 8 21 1.0E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 ProSitePatterns PS00361 Ribosomal protein S10 signature. 32 47 - T 06-07-2017 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS16580 5ff09848646e8b937f9830b764424767 105 Gene3D G3DSA:3.30.70.600 7 105 3.5E-45 T 06-07-2017 IPR027486 Ribosomal protein S10 domain APT55_RS16580 5ff09848646e8b937f9830b764424767 105 SUPERFAMILY SSF54999 8 105 3.79E-39 T 06-07-2017 IPR027486 Ribosomal protein S10 domain APT55_RS16580 5ff09848646e8b937f9830b764424767 105 SMART SM01403 10 104 2.4E-55 T 06-07-2017 IPR027486 Ribosomal protein S10 domain APT55_RS16580 5ff09848646e8b937f9830b764424767 105 Pfam PF00338 Ribosomal protein S10p/S20e 10 104 3.3E-36 T 06-07-2017 IPR027486 Ribosomal protein S10 domain APT55_RS20350 533e0342cf37a5238d780a3549a3f0ed 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 302 1.2E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20350 533e0342cf37a5238d780a3549a3f0ed 305 Gene3D G3DSA:1.10.3720.10 16 296 2.2E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20350 533e0342cf37a5238d780a3549a3f0ed 305 SUPERFAMILY SSF161098 69 293 3.14E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS10480 f8ccdeed516732546bcf74d86072129f 212 SUPERFAMILY SSF53254 2 203 6.55E-54 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS10480 f8ccdeed516732546bcf74d86072129f 212 SMART SM00855 4 158 2.6E-18 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS10480 f8ccdeed516732546bcf74d86072129f 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 198 2.7E-58 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS10480 f8ccdeed516732546bcf74d86072129f 212 PIRSF PIRSF000709 2 204 9.0E-16 T 06-07-2017 APT55_RS10480 f8ccdeed516732546bcf74d86072129f 212 Gene3D G3DSA:3.40.50.1240 4 204 1.0E-52 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 Gene3D G3DSA:3.40.50.360 268 408 1.0E-23 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 SUPERFAMILY SSF52218 266 413 5.03E-30 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 SUPERFAMILY SSF50475 424 574 5.89E-39 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 Pfam PF01613 Flavin reductase like domain 430 572 6.9E-20 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 SMART SM00849 50 239 7.6E-25 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 Pfam PF00753 Metallo-beta-lactamase superfamily 51 184 1.9E-8 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 SUPERFAMILY SSF56281 20 258 1.17E-45 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 Gene3D G3DSA:3.60.15.10 16 259 1.3E-90 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 Gene3D G3DSA:2.30.110.10 425 567 2.2E-39 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS26180 35c79022b0a648e920f60eb98b05a523 578 SMART SM00903 429 578 4.3E-40 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 118 140 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 93 110 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 27 49 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 169 186 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 75 92 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PRINTS PR00775 90kDa heat shock protein signature 187 205 1.2E-36 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 SMART SM00387 28 181 5.5E-9 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 SUPERFAMILY SSF54211 226 498 1.44E-72 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 SUPERFAMILY SSF55874 5 207 3.8E-58 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 Pfam PF00183 Hsp90 protein 424 655 1.7E-12 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 Pfam PF00183 Hsp90 protein 218 400 5.9E-38 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 PIRSF PIRSF002583 1 661 9.2E-167 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 SUPERFAMILY SSF110942 528 654 1.31E-9 T 06-07-2017 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 26 35 - T 06-07-2017 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 180 4.6E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15680 a08020aaa6add3afcef74ed3425f6899 662 Gene3D G3DSA:3.30.565.10 8 233 1.3E-63 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS27865 721f7f57b2d26f2b93608a4b0080473e 364 SUPERFAMILY SSF53756 15 345 1.29E-8 T 06-07-2017 APT55_RS08540 a75e1bffbe63727aca98abb602aee828 254 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 32 145 7.2E-8 T 06-07-2017 IPR007621 TPM domain APT55_RS20550 e7caeb32e48213093d4429c5285a55bb 417 Pfam PF04932 O-Antigen ligase 195 339 2.0E-9 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 Pfam PF02779 Transketolase, pyrimidine binding domain 8 178 9.2E-47 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 Gene3D G3DSA:3.40.50.920 195 323 9.8E-42 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 Pfam PF02780 Transketolase, C-terminal domain 194 315 1.8E-40 T 06-07-2017 IPR033248 Transketolase, C-terminal domain APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 SUPERFAMILY SSF52922 187 323 2.62E-41 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 Gene3D G3DSA:3.40.50.970 4 194 4.2E-78 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 SMART SM00861 4 179 2.2E-56 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain APT55_RS24180 f7bfd225bf3642848eb2bc323ce9b8d2 327 SUPERFAMILY SSF52518 7 203 1.35E-67 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold APT55_RS18710 2f4a4882776a2a866b5eac5d9be933a9 251 SUPERFAMILY SSF54534 128 219 4.84E-15 T 06-07-2017 APT55_RS18710 2f4a4882776a2a866b5eac5d9be933a9 251 Gene3D G3DSA:3.10.50.40 134 239 5.8E-13 T 06-07-2017 APT55_RS18710 2f4a4882776a2a866b5eac5d9be933a9 251 SUPERFAMILY SSF109998 30 157 1.29E-14 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS18710 2f4a4882776a2a866b5eac5d9be933a9 251 Pfam PF00639 PPIC-type PPIASE domain 143 217 3.6E-8 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 SMART SM00382 318 554 1.3E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 SMART SM00382 7 245 3.5 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 SUPERFAMILY SSF52540 10 258 1.64E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 12 260 1.9E-47 T 06-07-2017 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 323 562 6.2E-52 T 06-07-2017 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 Gene3D G3DSA:3.40.50.300 10 267 4.3E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 Gene3D G3DSA:3.40.50.300 318 568 4.0E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 Pfam PF02374 Anion-transporting ATPase 320 562 5.4E-53 T 06-07-2017 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 Pfam PF02374 Anion-transporting ATPase 11 261 1.3E-45 T 06-07-2017 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 APT55_RS09775 ce97a721d60a96bd51f16d8b35efb7b1 616 SUPERFAMILY SSF52540 321 566 9.02E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15720 595e6c7be47858b0eed330d94e606509 470 Gene3D G3DSA:3.40.50.300 41 290 7.7E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15720 595e6c7be47858b0eed330d94e606509 470 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 67 209 1.9E-14 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 APT55_RS15720 595e6c7be47858b0eed330d94e606509 470 Pfam PF05128 Domain of unknown function (DUF697) 289 457 4.7E-35 T 06-07-2017 IPR021147 Protein of unknown function DUF697 APT55_RS15720 595e6c7be47858b0eed330d94e606509 470 Pfam PF01926 50S ribosome-binding GTPase 67 193 3.1E-16 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS15720 595e6c7be47858b0eed330d94e606509 470 SUPERFAMILY SSF52540 50 211 1.65E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20290 cb4bfad857881ede9e663a33403eb6e5 359 Gene3D G3DSA:3.40.50.2300 194 355 6.0E-46 T 06-07-2017 APT55_RS20290 cb4bfad857881ede9e663a33403eb6e5 359 Pfam PF13407 Periplasmic binding protein domain 77 334 3.0E-54 T 06-07-2017 IPR025997 Periplasmic binding protein APT55_RS20290 cb4bfad857881ede9e663a33403eb6e5 359 Gene3D G3DSA:3.40.50.2300 71 193 1.0E-37 T 06-07-2017 APT55_RS20290 cb4bfad857881ede9e663a33403eb6e5 359 SUPERFAMILY SSF53822 63 355 5.44E-77 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS22735 d4e96ecacbdf9e4c35c2f96c86827ff4 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 83 6.0E-15 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS22735 d4e96ecacbdf9e4c35c2f96c86827ff4 106 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS22735 d4e96ecacbdf9e4c35c2f96c86827ff4 106 TIGRFAM TIGR02008 fdx_plant: ferredoxin [2Fe-2S] 2 97 1.4E-26 T 06-07-2017 IPR010241 Ferredoxin [2Fe-2S], plant GO:0009055|GO:0022900|GO:0051537 APT55_RS22735 d4e96ecacbdf9e4c35c2f96c86827ff4 106 Gene3D G3DSA:3.10.20.30 3 104 9.3E-30 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS22735 d4e96ecacbdf9e4c35c2f96c86827ff4 106 SUPERFAMILY SSF54292 2 101 1.97E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS24315 2c46a6acc3f0f79f4cf8e4f33329fc60 747 SUPERFAMILY SSF64182 68 459 9.55E-93 T 06-07-2017 APT55_RS24315 2c46a6acc3f0f79f4cf8e4f33329fc60 747 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 34 577 1.4E-146 T 06-07-2017 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 APT55_RS24315 2c46a6acc3f0f79f4cf8e4f33329fc60 747 Pfam PF01368 DHH family 88 220 1.9E-11 T 06-07-2017 IPR001667 DDH domain APT55_RS24315 2c46a6acc3f0f79f4cf8e4f33329fc60 747 Pfam PF02272 DHHA1 domain 389 452 9.1E-10 T 06-07-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APT55_RS19550 2d992bfb97d738a0f480e967b66fe178 149 Pfam PF10387 Protein of unknown function (DUF2442) 38 106 2.9E-10 T 06-07-2017 IPR018841 Protein of unknown function DUF2442 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 Gene3D G3DSA:3.20.20.70 35 306 2.0E-64 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 SUPERFAMILY SSF102114 35 306 6.15E-62 T 06-07-2017 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 Hamap MF_00206 Lipoyl synthase [lipA]. 1 308 135.07 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 Pfam PF04055 Radical SAM superfamily 73 245 6.0E-13 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 SMART SM00729 66 285 6.5E-14 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 PIRSF PIRSF005963 1 308 5.3E-129 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS01570 616839fe7c26ad38c6203ee86d88464f 308 TIGRFAM TIGR00510 lipA: lipoyl synthase 11 306 9.5E-104 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT55_RS05890 c6f36f8be4d385ee3adfe8c99f3fa3c9 204 Pfam PF00510 Cytochrome c oxidase subunit III 32 203 1.6E-36 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05890 c6f36f8be4d385ee3adfe8c99f3fa3c9 204 SUPERFAMILY SSF81452 19 203 8.24E-61 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05890 c6f36f8be4d385ee3adfe8c99f3fa3c9 204 Gene3D G3DSA:1.20.120.80 32 203 1.7E-56 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS27870 0f1b6fd9adbc2edf6f7bc200078c1f74 352 Gene3D G3DSA:3.90.25.10 229 342 2.1E-15 T 06-07-2017 APT55_RS27870 0f1b6fd9adbc2edf6f7bc200078c1f74 352 SUPERFAMILY SSF51735 1 341 4.09E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27870 0f1b6fd9adbc2edf6f7bc200078c1f74 352 Gene3D G3DSA:3.40.50.720 1 228 5.0E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27870 0f1b6fd9adbc2edf6f7bc200078c1f74 352 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 273 1.7E-36 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS06585 ff84ca5c4c8c0141f426550e5aa3b18e 186 SUPERFAMILY SSF52980 2 149 5.9E-13 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS06585 ff84ca5c4c8c0141f426550e5aa3b18e 186 Pfam PF05685 Putative restriction endonuclease 23 161 7.3E-26 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS06585 ff84ca5c4c8c0141f426550e5aa3b18e 186 Gene3D G3DSA:3.90.1570.10 5 161 2.1E-12 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS17415 e6725bb5ba389abef3de231d223b0fa2 583 Pfam PF00395 S-layer homology domain 66 108 2.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17415 e6725bb5ba389abef3de231d223b0fa2 583 Pfam PF04966 Carbohydrate-selective porin, OprB family 132 583 4.2E-54 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS00830 7e167d91f12d54eedca619cd9efae5ed 167 SUPERFAMILY SSF53927 13 165 2.68E-54 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 APT55_RS00830 7e167d91f12d54eedca619cd9efae5ed 167 Pfam PF14437 MafB19-like deaminase 18 163 6.2E-38 T 06-07-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 APT55_RS00830 7e167d91f12d54eedca619cd9efae5ed 167 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 67 104 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APT55_RS00830 7e167d91f12d54eedca619cd9efae5ed 167 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 22 163 46.728 T 06-07-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 APT55_RS00830 7e167d91f12d54eedca619cd9efae5ed 167 Gene3D G3DSA:3.40.140.10 12 162 3.8E-58 T 06-07-2017 APT55_RS09745 cf200725b386e25d64b82f586bd71f07 144 Pfam PF00741 Gas vesicle protein 102 140 2.8E-13 T 06-07-2017 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 APT55_RS09745 cf200725b386e25d64b82f586bd71f07 144 Pfam PF05121 Gas vesicle protein K 8 86 4.0E-32 T 06-07-2017 IPR007805 Gas vesicle protein GvpK GO:0031412 APT55_RS20845 9aa8686440eb77d4d3742bda36054602 285 Pfam PF06485 Protein of unknown function (DUF1092) 5 281 2.2E-103 T 06-07-2017 IPR009472 Protein of unknown function DUF1092 APT55_RS20425 c514d766a2bfb4fd41c8acd348a3488f 425 Pfam PF05598 Transposase domain (DUF772) 54 129 5.0E-17 T 06-07-2017 IPR008490 Transposase InsH, N-terminal APT55_RS22630 c514d766a2bfb4fd41c8acd348a3488f 425 Pfam PF05598 Transposase domain (DUF772) 54 129 5.0E-17 T 06-07-2017 IPR008490 Transposase InsH, N-terminal APT55_RS26935 c514d766a2bfb4fd41c8acd348a3488f 425 Pfam PF05598 Transposase domain (DUF772) 54 129 5.0E-17 T 06-07-2017 IPR008490 Transposase InsH, N-terminal APT55_RS27420 c514d766a2bfb4fd41c8acd348a3488f 425 Pfam PF05598 Transposase domain (DUF772) 54 129 5.0E-17 T 06-07-2017 IPR008490 Transposase InsH, N-terminal APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 TIGRFAM TIGR02730 carot_isom: carotene isomerase 6 499 1.2E-286 T 06-07-2017 IPR014101 Carotene isomerase GO:0016117|GO:0016853 KEGG: 00906+5.2.1.13|MetaCyc: PWY-6475 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 SUPERFAMILY SSF51905 458 495 1.2E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 SUPERFAMILY SSF51905 1 335 1.2E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 Pfam PF01593 Flavin containing amine oxidoreductase 15 419 1.3E-23 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 Gene3D G3DSA:3.50.50.60 3 59 2.0E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 Gene3D G3DSA:3.50.50.60 209 354 2.0E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 Gene3D G3DSA:3.50.50.60 111 112 2.0E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 8.7E-5 T 06-07-2017 APT55_RS18235 7fad9bcd2980f107900f6d1e38f3f2e1 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 395 411 8.7E-5 T 06-07-2017 APT55_RS17775 5521c0cd4d49416c1cff674ac8bfe0c5 668 Gene3D G3DSA:3.40.50.720 325 568 2.1E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17775 5521c0cd4d49416c1cff674ac8bfe0c5 668 Pfam PF02719 Polysaccharide biosynthesis protein 326 610 4.0E-120 T 06-07-2017 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain APT55_RS17775 5521c0cd4d49416c1cff674ac8bfe0c5 668 SUPERFAMILY SSF51735 187 313 8.27E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17775 5521c0cd4d49416c1cff674ac8bfe0c5 668 SUPERFAMILY SSF51735 324 589 7.43E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS17775 5521c0cd4d49416c1cff674ac8bfe0c5 668 Gene3D G3DSA:3.40.50.720 175 271 1.9E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03605 cb90bb895489df13f24ae287f01f478f 287 Gene3D G3DSA:2.160.10.10 37 108 5.3E-4 T 06-07-2017 APT55_RS25880 bff68f5fc6f7c69437ab50a9c702235f 224 PIRSF PIRSF026671 7 214 4.7E-60 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS25880 bff68f5fc6f7c69437ab50a9c702235f 224 Pfam PF01427 D-ala-D-ala dipeptidase 35 203 8.6E-39 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS25880 bff68f5fc6f7c69437ab50a9c702235f 224 SUPERFAMILY SSF55166 36 210 2.35E-56 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS25880 bff68f5fc6f7c69437ab50a9c702235f 224 Gene3D G3DSA:3.30.1380.10 35 201 2.8E-61 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS25880 bff68f5fc6f7c69437ab50a9c702235f 224 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 35 209 27.48 T 06-07-2017 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 APT55_RS02385 f90ec6603f16b21e1903ba2af8786d20 136 Pfam PF04134 Protein of unknown function, DUF393 6 118 6.9E-27 T 06-07-2017 IPR007263 Protein of unknown function DUF393 APT55_RS29995 7bc201233f2b60e06b96e7e6a5d97b8c 380 SUPERFAMILY SSF52540 20 188 6.71E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29995 7bc201233f2b60e06b96e7e6a5d97b8c 380 Pfam PF13177 DNA polymerase III, delta subunit 9 172 1.6E-39 T 06-07-2017 APT55_RS29995 7bc201233f2b60e06b96e7e6a5d97b8c 380 Gene3D G3DSA:3.40.50.300 8 172 3.0E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 Pfam PF00581 Rhodanese-like domain 7 128 2.3E-21 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 Pfam PF00581 Rhodanese-like domain 164 261 1.6E-10 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 SUPERFAMILY SSF52821 159 262 4.06E-28 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 SMART SM00450 149 266 4.1E-9 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 SMART SM00450 6 132 5.2E-23 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 Gene3D G3DSA:3.40.250.10 2 150 2.8E-54 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 SUPERFAMILY SSF52821 3 153 3.8E-47 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 ProSitePatterns PS00380 Rhodanese signature 1. 39 50 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 APT55_RS17380 3bb4228016ed6c992c37ec96c446e52f 267 Gene3D G3DSA:3.40.250.10 151 262 7.2E-29 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS25285 25d267d527ace96fb2f7c192cb4d189e 142 Gene3D G3DSA:3.90.1010.10 5 139 3.6E-51 T 06-07-2017 APT55_RS25285 25d267d527ace96fb2f7c192cb4d189e 142 Pfam PF02657 Fe-S metabolism associated domain 17 135 3.5E-41 T 06-07-2017 IPR003808 Fe-S metabolism associated domain, SufE-like APT55_RS25285 25d267d527ace96fb2f7c192cb4d189e 142 SUPERFAMILY SSF82649 4 139 2.72E-42 T 06-07-2017 APT55_RS14745 eafdf2486b13e8c552de20161ec73001 177 Pfam PF00805 Pentapeptide repeats (8 copies) 98 137 3.3E-15 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS14745 eafdf2486b13e8c552de20161ec73001 177 Pfam PF13599 Pentapeptide repeats (9 copies) 20 91 8.4E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS14745 eafdf2486b13e8c552de20161ec73001 177 SUPERFAMILY SSF141571 12 169 2.06E-39 T 06-07-2017 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 5 358 41.808 T 06-07-2017 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 Gene3D G3DSA:3.40.50.450 2 227 3.3E-63 T 06-07-2017 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 ProSitePatterns PS00433 Phosphofructokinase signature. 277 295 - T 06-07-2017 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PIRSF PIRSF000532 3 359 4.9E-124 T 06-07-2017 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 Pfam PF00365 Phosphofructokinase 6 309 1.4E-98 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 9 28 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 172 188 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 226 238 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 134 151 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 152 170 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 273 295 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 34 47 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 106 122 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 190 207 1.1E-65 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS20115 f7ea27c5f5962b028cd2daf9cacbfcef 359 SUPERFAMILY SSF53784 2 348 3.01E-107 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APT55_RS22300 1fe4e7fb6b2c2068aea88b5b6395d9af 303 Pfam PF00149 Calcineurin-like phosphoesterase 7 221 6.4E-10 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS22300 1fe4e7fb6b2c2068aea88b5b6395d9af 303 SUPERFAMILY SSF56300 5 246 2.28E-20 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS22300 1fe4e7fb6b2c2068aea88b5b6395d9af 303 TIGRFAM TIGR04168 TIGR04168: TIGR04168 family protein 26 294 2.6E-123 T 06-07-2017 IPR027629 Conserved hypothetical protein CHP04168 APT55_RS22300 1fe4e7fb6b2c2068aea88b5b6395d9af 303 Gene3D G3DSA:3.60.21.10 147 245 3.5E-12 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS22300 1fe4e7fb6b2c2068aea88b5b6395d9af 303 Gene3D G3DSA:3.60.21.10 7 76 3.5E-12 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS07145 5dec21de01309ebaaf7f39ef5d85053b 204 Gene3D G3DSA:3.90.1570.10 3 155 1.5E-26 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS07145 5dec21de01309ebaaf7f39ef5d85053b 204 Pfam PF05685 Putative restriction endonuclease 12 168 1.4E-35 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS07145 5dec21de01309ebaaf7f39ef5d85053b 204 SUPERFAMILY SSF52980 2 157 5.36E-24 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS14270 d0376f3f8bcfa8e2084be77cdec397fb 130 SMART SM00448 2 114 1.2E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14270 d0376f3f8bcfa8e2084be77cdec397fb 130 Gene3D G3DSA:3.40.50.2300 1 124 1.2E-33 T 06-07-2017 APT55_RS14270 d0376f3f8bcfa8e2084be77cdec397fb 130 Pfam PF00072 Response regulator receiver domain 4 114 1.2E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14270 d0376f3f8bcfa8e2084be77cdec397fb 130 SUPERFAMILY SSF52172 1 120 1.29E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 330 3.1E-21 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 Gene3D G3DSA:2.40.50.100 74 107 2.2E-12 T 06-07-2017 APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 Gene3D G3DSA:2.40.50.100 224 254 2.2E-12 T 06-07-2017 APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 191 424 2.4E-36 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 SUPERFAMILY SSF111369 211 335 2.75E-10 T 06-07-2017 APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 SUPERFAMILY SSF111369 132 174 2.75E-10 T 06-07-2017 APT55_RS05900 2d21a05a4259a46e1f1a4738e6acda64 431 SUPERFAMILY SSF111369 63 141 1.26E-7 T 06-07-2017 APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Pfam PF13361 UvrD-like helicase C-terminal domain 567 715 8.4E-20 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Pfam PF00580 UvrD/REP helicase N-terminal domain 27 322 1.6E-34 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Gene3D G3DSA:3.40.50.300 24 168 9.6E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Gene3D G3DSA:3.40.50.300 224 326 9.6E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Gene3D G3DSA:3.40.50.300 340 468 3.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 Gene3D G3DSA:3.40.50.300 601 723 3.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 SUPERFAMILY SSF52540 18 151 1.58E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 SUPERFAMILY SSF52540 691 722 1.58E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07525 aecbc00a25c32b006f1c6cd72e9acece 758 SUPERFAMILY SSF52540 180 652 1.58E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04630 b773a9cd933ce0392a1c9e68e2733cd9 114 Gene3D G3DSA:3.30.310.110 1 113 5.0E-42 T 06-07-2017 IPR014968 XisI protein APT55_RS04630 b773a9cd933ce0392a1c9e68e2733cd9 114 Pfam PF08869 XisI protein 1 112 2.7E-41 T 06-07-2017 IPR014968 XisI protein APT55_RS04630 b773a9cd933ce0392a1c9e68e2733cd9 114 SUPERFAMILY SSF143847 2 113 1.96E-41 T 06-07-2017 IPR014968 XisI protein APT55_RS12075 c8fce5b9b7ca800bca7a6ae3fc311ac8 277 Pfam PF09557 Domain of unknown function (DUF2382) 153 264 5.2E-33 T 06-07-2017 IPR019060 Domain of unknown function DUF2382 APT55_RS12075 c8fce5b9b7ca800bca7a6ae3fc311ac8 277 Gene3D G3DSA:3.90.50.10 11 119 1.1E-10 T 06-07-2017 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 APT55_RS12075 c8fce5b9b7ca800bca7a6ae3fc311ac8 277 TIGRFAM TIGR02271 TIGR02271: conserved domain 153 270 1.1E-16 T 06-07-2017 IPR019060 Domain of unknown function DUF2382 APT55_RS12075 c8fce5b9b7ca800bca7a6ae3fc311ac8 277 SUPERFAMILY SSF50346 7 123 7.06E-34 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS12075 c8fce5b9b7ca800bca7a6ae3fc311ac8 277 Pfam PF05239 PRC-barrel domain 19 85 2.8E-9 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS28725 e7b4a07d59e05f82a31ee1e012d529ae 190 Gene3D G3DSA:3.40.430.10 3 188 4.7E-29 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS28725 e7b4a07d59e05f82a31ee1e012d529ae 190 Pfam PF01872 RibD C-terminal domain 107 181 5.3E-9 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 APT55_RS28725 e7b4a07d59e05f82a31ee1e012d529ae 190 SUPERFAMILY SSF53597 3 188 3.93E-29 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 APT55_RS26700 8c2bfea81f8cd4e03881eb33a0f14ef3 374 Gene3D G3DSA:3.40.630.30 210 368 2.3E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS26700 8c2bfea81f8cd4e03881eb33a0f14ef3 374 SUPERFAMILY SSF55729 4 113 1.45E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS26700 8c2bfea81f8cd4e03881eb33a0f14ef3 374 SUPERFAMILY SSF55729 141 371 1.45E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 Gene3D G3DSA:2.70.50.60 270 395 3.0E-20 T 06-07-2017 APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 SMART SM00382 51 231 8.7E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 Pfam PF00005 ABC transporter 43 174 1.8E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 Gene3D G3DSA:3.40.50.300 4 248 4.4E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 Pfam PF14524 Wzt C-terminal domain 268 404 2.2E-21 T 06-07-2017 IPR029439 Wzt, C-terminal APT55_RS11835 793d4a7b4be509bc056938fafa8b946c 425 SUPERFAMILY SSF52540 39 235 6.3E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22535 df6ad38eaa0c5f95a1b6a53c66713d1b 137 Pfam PF13301 Protein of unknown function (DUF4079) 39 135 2.8E-19 T 06-07-2017 IPR025067 Protein of unknown function DUF4079 APT55_RS16815 943dad040662bb4f63b1febea91da965 78 Pfam PF11332 Protein of unknown function (DUF3134) 3 72 8.4E-31 T 06-07-2017 IPR021481 Protein of unknown function DUF3134 APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 Gene3D G3DSA:3.40.50.1100 150 337 2.1E-52 T 06-07-2017 APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 57 70 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 PIRSF PIRSF038945 2 354 6.3E-171 T 06-07-2017 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 321 6.1E-75 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 TIGRFAM TIGR00260 thrC: threonine synthase 11 328 1.0E-101 T 06-07-2017 IPR004450 Threonine synthase-like APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 Gene3D G3DSA:3.40.50.1100 65 149 6.9E-42 T 06-07-2017 APT55_RS28960 fee0b64450514e11f33fb75a3760698c 355 SUPERFAMILY SSF53686 6 338 1.31E-107 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS07920 d156caa4b9986a1bc674718b2c459433 245 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 6 241 6.9E-71 T 06-07-2017 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 APT55_RS07920 d156caa4b9986a1bc674718b2c459433 245 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 6 243 5.1E-48 T 06-07-2017 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 Gene3D G3DSA:1.10.601.10 7 77 1.3E-23 T 06-07-2017 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 Gene3D G3DSA:1.10.10.10 122 178 1.2E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 SUPERFAMILY SSF88946 6 78 2.67E-26 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 Pfam PF04542 Sigma-70 region 2 13 80 2.4E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 177 1.5E-23 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 SUPERFAMILY SSF88659 101 188 3.05E-7 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS06375 09ce5338033e982fdbf2b15ce42f42ad 606 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 36 49 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS19395 6c7e222e1726b2cae14719de8984d26e 375 Gene3D G3DSA:1.10.150.130 97 176 3.2E-9 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS19395 6c7e222e1726b2cae14719de8984d26e 375 Gene3D G3DSA:1.10.443.10 190 362 2.6E-20 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19395 6c7e222e1726b2cae14719de8984d26e 375 Pfam PF00589 Phage integrase family 192 362 1.8E-6 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS19395 6c7e222e1726b2cae14719de8984d26e 375 SUPERFAMILY SSF56349 88 368 4.41E-39 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS13415 c85ef75544010ed2f2163361767419c1 123 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 3 105 2.8E-27 T 06-07-2017 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV APT55_RS20110 3cb72d15abc291591e4e377e1b2cf357 225 Gene3D G3DSA:3.40.1210.10 1 224 2.0E-59 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20110 3cb72d15abc291591e4e377e1b2cf357 225 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 224 2.7E-54 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20110 3cb72d15abc291591e4e377e1b2cf357 225 SUPERFAMILY SSF64167 1 224 1.29E-59 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS20110 3cb72d15abc291591e4e377e1b2cf357 225 Pfam PF01975 Survival protein SurE 3 168 1.2E-43 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 APT55_RS28260 89a0ca8d02a449446892bc12c38cecbe 149 SUPERFAMILY SSF55729 4 142 5.49E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28260 89a0ca8d02a449446892bc12c38cecbe 149 Gene3D G3DSA:3.40.630.30 5 133 2.6E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS28260 89a0ca8d02a449446892bc12c38cecbe 149 Pfam PF00583 Acetyltransferase (GNAT) family 60 136 1.5E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS09105 6fb3170f130235d11644527ac922010a 229 Pfam PF12705 PD-(D/E)XK nuclease superfamily 36 207 1.4E-6 T 06-07-2017 APT55_RS19305 240a58c8e24117b57a5da6e3cf5aea94 270 Pfam PF07730 Histidine kinase 80 145 9.9E-13 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT55_RS19305 240a58c8e24117b57a5da6e3cf5aea94 270 Gene3D G3DSA:3.30.565.10 145 270 2.7E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19305 240a58c8e24117b57a5da6e3cf5aea94 270 SUPERFAMILY SSF55874 149 270 4.28E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS14355 ba0bdc6b7e1bfb0e61c9ec8e747d5850 274 Gene3D G3DSA:1.10.3720.10 12 264 1.5E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14355 ba0bdc6b7e1bfb0e61c9ec8e747d5850 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 2.7E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14355 ba0bdc6b7e1bfb0e61c9ec8e747d5850 274 SUPERFAMILY SSF161098 5 258 2.43E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS24355 b768df5a72b53f23de6582300e675e0d 337 Pfam PF11946 Domain of unknown function (DUF3463) 195 323 2.8E-56 T 06-07-2017 IPR022563 Domain of unknown function DUF3463 APT55_RS24355 b768df5a72b53f23de6582300e675e0d 337 Pfam PF04055 Radical SAM superfamily 34 187 7.1E-18 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS24355 b768df5a72b53f23de6582300e675e0d 337 Gene3D G3DSA:3.20.20.70 24 311 4.9E-47 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS24355 b768df5a72b53f23de6582300e675e0d 337 SUPERFAMILY SSF102114 24 309 6.54E-58 T 06-07-2017 APT55_RS24355 b768df5a72b53f23de6582300e675e0d 337 TIGRFAM TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH 1 320 1.7E-167 T 06-07-2017 IPR017833 Hopanoid biosynthesis associated radical SAM protein HpnH APT55_RS15610 346dd61111806fd5c6f54883fc8991e9 43 ProDom PD005510 PHOTOSYSTEM II CHLOROPLAST N SUBUNIT REACTION PLASTID CENTER MEMBRANE PHOTOSYNTHESIS 1 43 6.0E-11 T 06-07-2017 IPR003398 Photosystem II PsbN GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS15610 346dd61111806fd5c6f54883fc8991e9 43 Pfam PF02468 Photosystem II reaction centre N protein (psbN) 1 43 1.1E-24 T 06-07-2017 IPR003398 Photosystem II PsbN GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS15610 346dd61111806fd5c6f54883fc8991e9 43 Hamap MF_00293 Protein PsbN [psbN]. 1 43 17.432 T 06-07-2017 IPR003398 Photosystem II PsbN GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS24280 a892f5fade3c89f817945786f8fbc6de 110 Pfam PF01740 STAS domain 5 96 6.1E-16 T 06-07-2017 IPR002645 STAS domain APT55_RS24280 a892f5fade3c89f817945786f8fbc6de 110 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 98 2.1E-19 T 06-07-2017 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT55_RS24280 a892f5fade3c89f817945786f8fbc6de 110 SUPERFAMILY SSF52091 5 100 5.69E-24 T 06-07-2017 IPR002645 STAS domain APT55_RS24280 a892f5fade3c89f817945786f8fbc6de 110 Gene3D G3DSA:3.30.750.24 5 103 2.3E-29 T 06-07-2017 IPR002645 STAS domain APT55_RS05505 4f607547228cb9aa484e273653744f4e 137 Pfam PF11236 Protein of unknown function (DUF3037) 9 126 1.1E-44 T 06-07-2017 IPR021398 Protein of unknown function DUF3037 APT55_RS06005 79b13f9aaff5c8b7eb64bed12e46ef44 302 Gene3D G3DSA:1.20.5.490 213 235 7.1E-4 T 06-07-2017 APT55_RS28970 05762a53697543cff1b6bb3a94e2daed 364 SUPERFAMILY SSF102405 75 262 1.28E-44 T 06-07-2017 APT55_RS28970 05762a53697543cff1b6bb3a94e2daed 364 Gene3D G3DSA:3.40.50.450 63 348 1.9E-63 T 06-07-2017 APT55_RS28970 05762a53697543cff1b6bb3a94e2daed 364 Pfam PF03641 Possible lysine decarboxylase 153 259 1.1E-21 T 06-07-2017 IPR031100 LOG family APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 Pfam PF00005 ABC transporter 24 172 3.8E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 SUPERFAMILY SSF52540 5 222 3.06E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 SMART SM00382 33 220 2.5E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 Gene3D G3DSA:3.40.50.300 4 221 5.1E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01555 a84aa8a185d174e91d928feff60aec67 223 TIGRFAM TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family 5 221 1.7E-109 T 06-07-2017 IPR014324 ABC transporter ATP-binding subunit, DevA type APT55_RS27925 720e8f8b56cac04ea381725d01b6cf95 280 Gene3D G3DSA:3.20.20.70 119 251 1.9E-10 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS27925 720e8f8b56cac04ea381725d01b6cf95 280 SUPERFAMILY SSF51445 73 256 4.71E-6 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS12630 b981aa8dea14a9264278e0a5e7eea240 529 Gene3D G3DSA:3.40.50.300 194 361 1.4E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12630 b981aa8dea14a9264278e0a5e7eea240 529 SUPERFAMILY SSF52540 196 446 4.05E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00145 f3017f490891dd243b1fac912f30b879 599 Gene3D G3DSA:1.25.40.10 283 484 7.3E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00145 f3017f490891dd243b1fac912f30b879 599 Gene3D G3DSA:1.25.40.10 179 217 7.3E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 4 102 2.0E-19 T 06-07-2017 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 398 7.1E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 396 1.6E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 340 1.6E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.6E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 344 354 1.6E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 SMART SM00387 289 399 5.1E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 SUPERFAMILY SSF55874 232 397 4.71E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 Gene3D G3DSA:1.10.287.130 156 239 1.3E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 Gene3D G3DSA:3.30.565.10 246 398 1.1E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 Pfam PF00512 His Kinase A (phospho-acceptor) domain 168 243 4.4E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 SMART SM00388 164 243 4.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS10110 c17c9a1cbe57c7c7526af7f0b2cb4d04 400 SUPERFAMILY SSF47384 152 244 2.35E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 Pfam PF00202 Aminotransferase class-III 13 422 5.4E-111 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 273 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 Gene3D G3DSA:3.90.1150.10 325 424 8.1E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 Gene3D G3DSA:3.90.1150.10 5 54 8.1E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 Gene3D G3DSA:3.40.640.10 55 324 4.7E-92 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 SUPERFAMILY SSF53383 6 425 3.63E-115 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS07925 ca7a0988da713991ea521bff4144a531 425 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 6 422 5.5E-163 T 06-07-2017 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 APT55_RS00190 e8e4d6fc9b890d7bab4b6f3861e1ec4d 120 Pfam PF00805 Pentapeptide repeats (8 copies) 45 84 1.6E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS00190 e8e4d6fc9b890d7bab4b6f3861e1ec4d 120 SUPERFAMILY SSF141571 15 103 1.05E-25 T 06-07-2017 APT55_RS00190 e8e4d6fc9b890d7bab4b6f3861e1ec4d 120 Gene3D G3DSA:3.80.10.10 26 85 7.8E-4 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like APT55_RS15395 c1844d02d87714cb9e254d2f89e783a8 324 Pfam PF04116 Fatty acid hydroxylase superfamily 148 282 2.8E-27 T 06-07-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 Gene3D G3DSA:3.40.50.980 202 295 9.1E-21 T 06-07-2017 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 Gene3D G3DSA:3.40.50.980 343 405 9.1E-21 T 06-07-2017 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 Gene3D G3DSA:3.40.50.980 19 201 1.4E-21 T 06-07-2017 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 Pfam PF00501 AMP-binding enzyme 26 476 3.7E-76 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 SUPERFAMILY SSF56801 346 526 2.49E-92 T 06-07-2017 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 SUPERFAMILY SSF56801 18 300 2.49E-92 T 06-07-2017 APT55_RS03465 0ff4d371743524dc5903dc20521c65f6 625 Gene3D G3DSA:2.30.38.10 406 467 2.5E-17 T 06-07-2017 APT55_RS25790 330f999e2bff7c6e82e5fa6511c2c554 108 Pfam PF10674 Protein of unknown function (DUF2488) 2 92 3.2E-44 T 06-07-2017 IPR019616 Uncharacterised protein family Ycf54 APT55_RS24090 bb767571cf0cf1d21cb3946ac7540c49 394 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 124 394 5.1E-100 T 06-07-2017 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24090 bb767571cf0cf1d21cb3946ac7540c49 394 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 3 394 43.68 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24090 bb767571cf0cf1d21cb3946ac7540c49 394 Gene3D G3DSA:1.10.645.10 5 386 4.5E-52 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24090 bb767571cf0cf1d21cb3946ac7540c49 394 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 47 58 - T 06-07-2017 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS24090 bb767571cf0cf1d21cb3946ac7540c49 394 SUPERFAMILY SSF56762 20 394 1.57E-119 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 Pfam PF16868 NMT1-like family 39 311 3.6E-37 T 06-07-2017 IPR011852 TRAP transporter solute receptor, TAXI family APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 310 7.4E-44 T 06-07-2017 IPR011852 TRAP transporter solute receptor, TAXI family APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 Gene3D G3DSA:3.40.190.10 30 110 1.0E-20 T 06-07-2017 APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 Gene3D G3DSA:3.40.190.10 246 310 1.0E-20 T 06-07-2017 APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 SUPERFAMILY SSF53850 30 310 2.85E-44 T 06-07-2017 APT55_RS18765 a66d99967914c14a983ac52720b12fae 513 Gene3D G3DSA:3.40.190.10 111 245 7.7E-20 T 06-07-2017 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 13 38 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 Gene3D G3DSA:3.30.200.20 3 78 9.9E-17 T 06-07-2017 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 SUPERFAMILY SSF56112 3 269 2.43E-58 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 SMART SM00220 7 273 3.5E-42 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 Pfam PF00069 Protein kinase domain 7 260 6.1E-38 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 Gene3D G3DSA:1.10.510.10 79 270 2.5E-37 T 06-07-2017 APT55_RS18805 69d2792a977e4fd5975e6b3f59a0e6cf 556 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 133 145 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 SUPERFAMILY SSF52833 42 150 5.47E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 Pfam PF13417 Glutathione S-transferase, N-terminal domain 52 120 5.9E-16 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 Pfam PF13410 Glutathione S-transferase, C-terminal domain 161 228 3.8E-9 T 06-07-2017 APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 SUPERFAMILY SSF47616 136 256 1.22E-15 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 Gene3D G3DSA:3.40.30.10 42 149 1.9E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS18470 e2b590047ffc32eb9444e60d8189e748 399 Gene3D G3DSA:1.20.1050.10 150 237 1.0E-10 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like APT55_RS01620 4a0856fb8bbb81f4eb759b89725e07dd 158 Pfam PF00583 Acetyltransferase (GNAT) family 58 136 3.4E-19 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS01620 4a0856fb8bbb81f4eb759b89725e07dd 158 SUPERFAMILY SSF55729 1 155 2.19E-40 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS01620 4a0856fb8bbb81f4eb759b89725e07dd 158 Gene3D G3DSA:3.40.630.30 2 155 2.6E-63 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS06075 e68a2f08d216412af5cac417b8955949 65 Pfam PF10892 Protein of unknown function (DUF2688) 9 53 2.2E-11 T 06-07-2017 IPR024392 Protein of unknown function DUF2688 APT55_RS06075 e68a2f08d216412af5cac417b8955949 65 ProDom PD027691 KLEB PLASMID TRANSCRIPTION DNA-BINDING KCRA2 REGULATION 6 58 3.0E-11 T 06-07-2017 IPR024392 Protein of unknown function DUF2688 APT55_RS16380 344539a44fb7b7ea14c9500fd08db23d 381 Gene3D G3DSA:3.40.50.2000 193 338 2.0E-24 T 06-07-2017 APT55_RS16380 344539a44fb7b7ea14c9500fd08db23d 381 Pfam PF13439 Glycosyltransferase Family 4 18 176 1.8E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS16380 344539a44fb7b7ea14c9500fd08db23d 381 SUPERFAMILY SSF53756 9 370 6.98E-66 T 06-07-2017 APT55_RS16380 344539a44fb7b7ea14c9500fd08db23d 381 Pfam PF00534 Glycosyl transferases group 1 195 340 3.8E-31 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS25935 ed3315f6b5a578db268b115dbff66ea9 373 TIGRFAM TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB 6 371 3.5E-163 T 06-07-2017 IPR017832 Glycosyl transferase, family 2, hopene-associated, HpnB APT55_RS25935 ed3315f6b5a578db268b115dbff66ea9 373 SUPERFAMILY SSF53448 40 306 8.44E-36 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25935 ed3315f6b5a578db268b115dbff66ea9 373 Gene3D G3DSA:3.90.550.10 43 252 9.2E-23 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS25935 ed3315f6b5a578db268b115dbff66ea9 373 Pfam PF00535 Glycosyl transferase family 2 44 223 8.0E-21 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 Gene3D G3DSA:3.40.50.300 16 253 7.9E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 SUPERFAMILY SSF52540 17 252 4.72E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 SMART SM00382 41 231 1.0E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 Pfam PF00005 ABC transporter 32 183 3.8E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 PIRSF PIRSF039085 13 259 5.3E-112 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT55_RS04515 b4e9a8215c6aa35cf885207e5b2bfa15 263 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08220 0a7f9c77584563814b40e4e830b6d0d4 355 SUPERFAMILY SSF53448 6 276 4.64E-58 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS08220 0a7f9c77584563814b40e4e830b6d0d4 355 SUPERFAMILY SSF159283 282 346 3.14E-13 T 06-07-2017 APT55_RS08220 0a7f9c77584563814b40e4e830b6d0d4 355 Gene3D G3DSA:3.90.550.10 4 267 4.5E-78 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS08220 0a7f9c77584563814b40e4e830b6d0d4 355 Pfam PF00483 Nucleotidyl transferase 7 277 7.5E-53 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT55_RS17935 392e8e4538fef09a70f051898069ca87 297 SUPERFAMILY SSF51658 14 251 2.32E-19 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain APT55_RS17935 392e8e4538fef09a70f051898069ca87 297 Pfam PF01261 Xylose isomerase-like TIM barrel 27 197 3.5E-7 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain APT55_RS17935 392e8e4538fef09a70f051898069ca87 297 Gene3D G3DSA:3.20.20.150 12 198 4.4E-15 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 Gene3D G3DSA:3.40.640.10 114 328 2.2E-14 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 Gene3D G3DSA:3.40.640.10 520 759 8.2E-41 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 SUPERFAMILY SSF53383 498 903 1.71E-99 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 SUPERFAMILY SSF53383 946 968 1.71E-99 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 Pfam PF02347 Glycine cleavage system P-protein 491 754 2.9E-8 T 06-07-2017 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 Pfam PF02347 Glycine cleavage system P-protein 43 463 9.2E-191 T 06-07-2017 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 44 967 0.0 T 06-07-2017 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 SUPERFAMILY SSF53383 44 466 2.39E-105 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS11400 d8ed1b400e6b9ae1f28462f58bfc3d1b 974 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 35 973 25.468 T 06-07-2017 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT55_RS05555 295a6130e297516cdb1f087cbe8e853c 337 SUPERFAMILY SSF52499 171 336 1.35E-6 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS05555 295a6130e297516cdb1f087cbe8e853c 337 SUPERFAMILY SSF52499 43 110 1.35E-6 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS05555 295a6130e297516cdb1f087cbe8e853c 337 Gene3D G3DSA:3.40.50.850 169 336 1.5E-22 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS05555 295a6130e297516cdb1f087cbe8e853c 337 Gene3D G3DSA:3.40.50.850 43 126 1.5E-22 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 Gene3D G3DSA:3.40.50.2300 171 355 1.1E-73 T 06-07-2017 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 SUPERFAMILY SSF53822 55 421 4.71E-100 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 Pfam PF13433 Periplasmic binding protein domain 56 418 1.6E-165 T 06-07-2017 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 Gene3D G3DSA:3.40.50.2300 53 135 3.8E-5 T 06-07-2017 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 56 415 3.6E-179 T 06-07-2017 IPR017777 ABC transporter, urea, substrate-binding, UrtA APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 78 94 9.7E-6 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 56 72 9.7E-6 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT55_RS17710 c21b1be9a55c7c445731a108e77a9342 441 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 309 322 9.7E-6 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 SUPERFAMILY SSF51735 5 261 2.72E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 Pfam PF00106 short chain dehydrogenase 9 200 3.7E-47 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 Gene3D G3DSA:3.40.50.720 8 241 3.7E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 7.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 7.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS23155 e9f39700cead216616f50d600c2b7a38 337 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 7.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 SUPERFAMILY SSF63829 55 130 6.21E-8 T 06-07-2017 APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 SUPERFAMILY SSF63829 117 318 1.47E-23 T 06-07-2017 APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Gene3D G3DSA:2.120.10.30 124 204 5.8E-10 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Pfam PF07494 Two component regulator propeller 176 197 0.0087 T 06-07-2017 IPR011110 Two component regulator propeller APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Pfam PF07494 Two component regulator propeller 135 156 7.2E-5 T 06-07-2017 IPR011110 Two component regulator propeller APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Pfam PF07494 Two component regulator propeller 298 319 0.0066 T 06-07-2017 IPR011110 Two component regulator propeller APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Pfam PF07494 Two component regulator propeller 94 114 1.5E-4 T 06-07-2017 IPR011110 Two component regulator propeller APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Gene3D G3DSA:2.120.10.30 206 344 2.1E-7 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS02430 5ac391ebeac5949a3f9572dfdea4d5fe 348 Gene3D G3DSA:2.120.10.30 53 123 5.1E-7 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS21470 b390f186f457b32b0356dd0125eb4a5c 1328 Pfam PF11965 Domain of unknown function (DUF3479) 24 186 1.1E-53 T 06-07-2017 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS21470 b390f186f457b32b0356dd0125eb4a5c 1328 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 24 1327 0.0 T 06-07-2017 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS21470 b390f186f457b32b0356dd0125eb4a5c 1328 Pfam PF02514 CobN/Magnesium Chelatase 190 1309 0.0 T 06-07-2017 IPR003672 CobN/magnesium chelatase GO:0009058 APT55_RS02410 36f72e1f8737c2dfbb57044adb4aefa8 801 TIGRFAM TIGR02470 sucr_synth: sucrose synthase 17 796 0.0 T 06-07-2017 IPR012820 Sucrose synthase, plant/cyanobacteria GO:0005985|GO:0016157 KEGG: 00500+2.4.1.13|MetaCyc: PWY-3801 APT55_RS02410 36f72e1f8737c2dfbb57044adb4aefa8 801 Pfam PF00534 Glycosyl transferases group 1 566 729 2.1E-21 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS02410 36f72e1f8737c2dfbb57044adb4aefa8 801 Gene3D G3DSA:3.40.50.2000 559 739 2.0E-13 T 06-07-2017 APT55_RS02410 36f72e1f8737c2dfbb57044adb4aefa8 801 SUPERFAMILY SSF53756 355 755 4.32E-47 T 06-07-2017 APT55_RS02410 36f72e1f8737c2dfbb57044adb4aefa8 801 Pfam PF00862 Sucrose synthase 3 542 1.7E-199 T 06-07-2017 IPR000368 Sucrose synthase GO:0005985|GO:0016157 APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 PIRSF PIRSF001589 54 529 5.2E-65 T 06-07-2017 APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 Pfam PF00733 Asparagine synthase 167 514 2.7E-50 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 Gene3D G3DSA:3.40.50.620 152 303 8.9E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 Gene3D G3DSA:3.40.50.620 363 514 8.9E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 SUPERFAMILY SSF56235 60 139 7.87E-10 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 SUPERFAMILY SSF52402 368 495 5.59E-54 T 06-07-2017 APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 SUPERFAMILY SSF52402 158 307 5.59E-54 T 06-07-2017 APT55_RS00340 ba028f0511b4752ac818df6d06155708 553 Gene3D G3DSA:3.60.20.10 59 140 1.1E-11 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS02440 1db6caa151e5f9522a2b0dfa92146a7b 538 Pfam PF12770 CHAT domain 101 380 7.5E-20 T 06-07-2017 IPR024983 CHAT domain APT55_RS02440 1db6caa151e5f9522a2b0dfa92146a7b 538 SUPERFAMILY SSF49879 433 528 2.3E-15 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS02440 1db6caa151e5f9522a2b0dfa92146a7b 538 Gene3D G3DSA:2.60.200.20 433 526 2.7E-14 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS02440 1db6caa151e5f9522a2b0dfa92146a7b 538 Pfam PF00498 FHA domain 445 520 3.9E-11 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 SUPERFAMILY SSF55874 663 846 6.81E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Pfam PF00512 His Kinase A (phospho-acceptor) domain 579 675 4.9E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 841 1.4E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 790 800 1.4E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 772 786 1.4E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 803 821 1.4E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Gene3D G3DSA:3.30.565.10 674 844 2.1E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Pfam PF13520 Amino acid permease 37 404 8.7E-14 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Gene3D G3DSA:1.10.287.130 574 605 2.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Gene3D G3DSA:1.10.287.130 643 672 2.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 SMART SM00387 721 844 7.0E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 SUPERFAMILY SSF47384 644 675 2.75E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 SUPERFAMILY SSF47384 574 614 2.75E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 724 842 4.7E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS21190 60d86ad846afadd846914a300ff4618a 849 SMART SM00388 579 676 2.7E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 42 250 5.3E-19 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 Gene3D G3DSA:2.40.37.10 244 376 1.8E-33 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 SUPERFAMILY SSF50621 235 376 3.56E-37 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 337 350 1.2E-8 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 240 259 1.2E-8 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 165 178 1.2E-8 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 49 67 1.2E-8 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 Gene3D G3DSA:3.20.20.10 33 243 2.7E-40 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 SUPERFAMILY SSF51419 18 251 8.67E-42 T 06-07-2017 IPR029066 PLP-binding barrel APT55_RS06690 901a6f2e357a46cf04d79994bb030df9 380 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 257 357 1.8E-11 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT55_RS04240 d172fbd58800d7e6536c9260d502f8eb 143 Gene3D G3DSA:3.30.420.140 6 135 6.0E-9 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS04240 d172fbd58800d7e6536c9260d502f8eb 143 SUPERFAMILY SSF53098 3 134 1.82E-20 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS04240 d172fbd58800d7e6536c9260d502f8eb 143 SMART SM00732 5 92 1.3E-10 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 APT55_RS04240 d172fbd58800d7e6536c9260d502f8eb 143 Pfam PF03652 Holliday junction resolvase 6 133 8.6E-7 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT55_RS25515 1f32bf82a8365246e156773d6f067030 374 SUPERFAMILY SSF53756 109 366 1.08E-45 T 06-07-2017 APT55_RS25515 1f32bf82a8365246e156773d6f067030 374 Gene3D G3DSA:3.40.50.2000 203 345 6.8E-16 T 06-07-2017 APT55_RS25515 1f32bf82a8365246e156773d6f067030 374 Pfam PF00534 Glycosyl transferases group 1 201 345 6.0E-22 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS29605 011176620ba5a7029d67c7868dad1b5a 268 Gene3D G3DSA:1.10.287.110 67 129 1.5E-11 T 06-07-2017 IPR001623 DnaJ domain APT55_RS29605 011176620ba5a7029d67c7868dad1b5a 268 SUPERFAMILY SSF46565 68 124 3.53E-10 T 06-07-2017 IPR001623 DnaJ domain APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 Pfam PF00082 Subtilase family 320 637 3.5E-20 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 Gene3D G3DSA:3.40.50.200 320 662 4.9E-28 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 SUPERFAMILY SSF52743 319 470 6.41E-37 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 SUPERFAMILY SSF52743 502 673 6.41E-37 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 599 615 3.6E-7 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 316 335 3.6E-7 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS30145 dd0dda1374e5af55a6d7e5495e136e33 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 360 373 3.6E-7 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS11850 8d90d0638f474df219df0af89b0e39b7 108 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 3 64 3.0E-12 T 06-07-2017 APT55_RS11850 8d90d0638f474df219df0af89b0e39b7 108 Pfam PF00936 BMC domain 4 86 4.2E-26 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS11850 8d90d0638f474df219df0af89b0e39b7 108 SUPERFAMILY SSF143414 3 104 9.03E-27 T 06-07-2017 APT55_RS11850 8d90d0638f474df219df0af89b0e39b7 108 SMART SM00877 3 86 1.1E-28 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 Pfam PF00459 Inositol monophosphatase family 2 306 6.7E-49 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 PRINTS PR00377 Inositol monophosphatase superfamily signature 248 272 1.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 1.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 1.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 251 265 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 112 125 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 Gene3D G3DSA:3.30.540.10 3 171 1.1E-46 T 06-07-2017 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 Gene3D G3DSA:3.40.190.80 185 309 2.5E-33 T 06-07-2017 APT55_RS22980 b3da245fca489e7b7b444037f0f71861 319 SUPERFAMILY SSF56655 7 306 1.23E-68 T 06-07-2017 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Gene3D G3DSA:3.30.190.10 590 672 1.4E-18 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SMART SM00961 451 543 4.0E-35 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SMART SM00961 577 672 3.7E-38 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SMART SM00961 215 308 6.7E-51 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SMART SM00961 339 432 3.8E-47 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Gene3D G3DSA:3.30.190.10 459 548 3.4E-19 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Gene3D G3DSA:3.30.190.10 348 441 5.2E-23 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Gene3D G3DSA:3.30.190.10 226 335 4.5E-22 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SUPERFAMILY SSF55239 222 313 1.31E-30 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SUPERFAMILY SSF55239 341 439 8.9E-31 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Gene3D G3DSA:2.160.10.10 18 182 3.0E-36 T 06-07-2017 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SUPERFAMILY SSF55239 581 673 1.31E-25 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 225 308 2.9E-19 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 589 672 1.3E-15 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 347 432 4.6E-19 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 459 543 1.8E-15 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SUPERFAMILY SSF55239 457 547 3.79E-27 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 SUPERFAMILY SSF51161 18 167 1.57E-33 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 124 0.0012 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 21 53 8.6E-5 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS05715 a875a3b345fc6b96f72c2c8039d3b76e 674 PIRSF PIRSF037250 1 672 2.5E-282 T 06-07-2017 IPR017156 Carbon dioxide concentrating mechanism protein, CcmM APT55_RS17315 f7abcb3c43267de5b9deb4f206391147 90 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 39 2.5E-5 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS17315 f7abcb3c43267de5b9deb4f206391147 90 SUPERFAMILY SSF143120 4 44 1.44E-6 T 06-07-2017 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 SUPERFAMILY SSF52096 12 322 3.89E-92 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 94 105 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 140 156 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 119 137 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 175 188 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 203 212 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 159 172 4.5E-46 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 Gene3D G3DSA:3.90.226.10 65 274 9.5E-44 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 12 154 1.3E-57 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 11 322 48.64 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS07200 63f99f701468a309f687aa0d96da7ab5 331 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 10 324 2.9E-144 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 SUPERFAMILY SSF57840 1 37 1.7E-17 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 18.714 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 Pfam PF00444 Ribosomal protein L36 1 37 3.1E-20 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 6.0E-23 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS09150 026b008a6eef0c7180529f0d1c8d793a 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 7.0E-9 T 06-07-2017 APT55_RS06330 8836a668f7f5a592ca516db685c3a891 2985 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 1609 1961 2.5E-48 T 06-07-2017 IPR010090 Phage tail tape measure protein APT55_RS06330 8836a668f7f5a592ca516db685c3a891 2985 Pfam PF10145 Phage-related minor tail protein 1644 1853 3.3E-31 T 06-07-2017 IPR010090 Phage tail tape measure protein APT55_RS13740 6890df49808e2f15c26563139ef4299b 304 SUPERFAMILY SSF141571 148 288 5.1E-24 T 06-07-2017 APT55_RS13740 6890df49808e2f15c26563139ef4299b 304 Pfam PF00805 Pentapeptide repeats (8 copies) 148 181 1.7E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS13740 6890df49808e2f15c26563139ef4299b 304 Pfam PF00805 Pentapeptide repeats (8 copies) 235 272 2.3E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 Pfam PF03092 BT1 family 224 432 2.4E-61 T 06-07-2017 IPR004324 Folate-biopterin transporter GO:0006810|GO:0016021 APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 Pfam PF03092 BT1 family 39 205 2.3E-48 T 06-07-2017 IPR004324 Folate-biopterin transporter GO:0006810|GO:0016021 APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 Gene3D G3DSA:1.20.1250.20 30 215 1.3E-17 T 06-07-2017 APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 Gene3D G3DSA:1.20.1250.20 236 420 7.8E-8 T 06-07-2017 APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 SUPERFAMILY SSF103473 30 421 1.96E-30 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS16300 7391c1ec78c806deabf5751b51f2bea4 466 TIGRFAM TIGR00788 fbt: folate/biopterin transporter 14 434 2.6E-134 T 06-07-2017 IPR004324 Folate-biopterin transporter GO:0006810|GO:0016021 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 222 253 3.9 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 285 316 5.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 93 124 30.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 125 153 140.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 255 283 1.3 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 60 91 0.25 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SMART SM00567 E-Z type HEAT repeats 155 186 39.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 Gene3D G3DSA:1.25.10.10 48 114 3.3E-5 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 Pfam PF03130 PBS lyase HEAT-like repeat 287 315 0.0053 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 Gene3D G3DSA:1.25.10.10 127 332 4.0E-41 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 SUPERFAMILY SSF48371 43 335 1.55E-41 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 Pfam PF13646 HEAT repeats 49 124 4.9E-11 T 06-07-2017 APT55_RS03340 41e1df77924346cae3dfb137a90573ae 339 Pfam PF13646 HEAT repeats 209 273 1.3E-10 T 06-07-2017 APT55_RS26050 016d9e59469c3ada7b5ff2b3ca31f074 156 SUPERFAMILY SSF51182 2 155 2.18E-40 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS26050 016d9e59469c3ada7b5ff2b3ca31f074 156 Gene3D G3DSA:2.60.120.480 2 154 9.8E-31 T 06-07-2017 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 APT55_RS26050 016d9e59469c3ada7b5ff2b3ca31f074 156 Pfam PF04115 Ureidoglycolate lyase 60 131 5.3E-6 T 06-07-2017 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 Gene3D G3DSA:3.40.50.300 3 182 3.1E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 ProSitePatterns PS00113 Adenylate kinase signature. 82 93 - T 06-07-2017 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 Hamap MF_00235 Adenylate kinase [adk]. 2 183 44.911 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 Pfam PF00406 Adenylate kinase 7 160 5.2E-55 T 06-07-2017 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 TIGRFAM TIGR01351 adk: adenylate kinase 3 128 2.5E-50 T 06-07-2017 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 SUPERFAMILY SSF52540 4 181 3.34E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 PRINTS PR00094 Adenylate kinase signature 82 98 6.9E-34 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 PRINTS PR00094 Adenylate kinase signature 147 161 6.9E-34 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 PRINTS PR00094 Adenylate kinase signature 130 145 6.9E-34 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 PRINTS PR00094 Adenylate kinase signature 33 47 6.9E-34 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS00935 93bd5de14d0ca8dae6910cc5956a8f33 183 PRINTS PR00094 Adenylate kinase signature 5 18 6.9E-34 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT55_RS01025 286ba0b54cf8a6df0a5c218be4049d89 256 SUPERFAMILY SSF56281 1 202 2.37E-13 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS01025 286ba0b54cf8a6df0a5c218be4049d89 256 Gene3D G3DSA:3.60.15.10 2 247 6.7E-20 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS01025 286ba0b54cf8a6df0a5c218be4049d89 256 Pfam PF13483 Beta-lactamase superfamily domain 3 199 6.2E-39 T 06-07-2017 APT55_RS10915 a2cb628c401e3419f27e5b32e4f1bbe0 574 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 249 544 1.6E-90 T 06-07-2017 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal APT55_RS10915 a2cb628c401e3419f27e5b32e4f1bbe0 574 SUPERFAMILY SSF55729 361 541 2.81E-11 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS30075 580f315da9f4d21a6dbaf2bbff6c44ee 173 Gene3D G3DSA:3.40.220.10 6 170 1.8E-68 T 06-07-2017 APT55_RS30075 580f315da9f4d21a6dbaf2bbff6c44ee 173 SUPERFAMILY SSF52949 6 169 3.7E-62 T 06-07-2017 APT55_RS30075 580f315da9f4d21a6dbaf2bbff6c44ee 173 Pfam PF01661 Macro domain 23 135 4.6E-44 T 06-07-2017 IPR002589 Macro domain APT55_RS30075 580f315da9f4d21a6dbaf2bbff6c44ee 173 SMART SM00506 6 135 2.5E-47 T 06-07-2017 IPR002589 Macro domain APT55_RS08160 efd608fe3f97d8e26b4cb77dcbaed30f 118 Pfam PF02583 Metal-sensitive transcriptional repressor 37 115 5.6E-29 T 06-07-2017 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 Pfam PF16254 Domain of unknown function (DUF4910) 20 357 7.1E-117 T 06-07-2017 IPR032589 Domain of unknown function DUF4910 APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 Gene3D G3DSA:3.40.630.10 181 338 1.3E-9 T 06-07-2017 APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 PIRSF PIRSF015244 1 436 4.7E-205 T 06-07-2017 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 SUPERFAMILY SSF53187 94 358 2.47E-40 T 06-07-2017 APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 Pfam PF09940 Domain of unknown function (DUF2172) 70 161 4.1E-42 T 06-07-2017 IPR032610 Domain of unknown function DUF2172 APT55_RS23010 123607a9526d3b1985b56fc85a0a7707 438 Pfam PF16221 winged helix-turn-helix 359 434 5.0E-28 T 06-07-2017 IPR032622 UCP01524, winged helix-turn-helix domain APT55_RS21000 006cf02cfb303a0d6d77ed97d2ee1b98 551 Gene3D G3DSA:3.90.1200.10 237 313 7.4E-7 T 06-07-2017 APT55_RS21000 006cf02cfb303a0d6d77ed97d2ee1b98 551 Pfam PF03109 ABC1 family 102 216 3.8E-32 T 06-07-2017 IPR004147 UbiB domain APT55_RS21000 006cf02cfb303a0d6d77ed97d2ee1b98 551 SUPERFAMILY SSF56112 181 426 6.21E-28 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS21000 006cf02cfb303a0d6d77ed97d2ee1b98 551 SUPERFAMILY SSF56112 84 147 6.21E-28 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS12535 a2df689703c361d88d79139f81bc5a8c 69 Pfam PF11211 Protein of unknown function (DUF2997) 4 50 3.7E-21 T 06-07-2017 IPR021375 Protein of unknown function DUF2997 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 SUPERFAMILY SSF56762 20 394 7.98E-117 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 47 58 - T 06-07-2017 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 124 394 5.5E-98 T 06-07-2017 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 Gene3D G3DSA:1.10.645.10 239 386 2.2E-13 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 Gene3D G3DSA:1.10.645.10 6 237 2.4E-40 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04475 a8662f960ea1896ffc2548ae23e626e9 394 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 5 394 42.662 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 SUPERFAMILY SSF54506 3 135 6.28E-44 T 06-07-2017 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 06-07-2017 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 277 8.8E-98 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 Pfam PF01678 Diaminopimelate epimerase 159 273 2.0E-30 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 Pfam PF01678 Diaminopimelate epimerase 5 129 5.0E-32 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 Gene3D G3DSA:3.10.310.10 1 124 4.9E-57 T 06-07-2017 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 Gene3D G3DSA:3.10.310.10 125 268 4.3E-56 T 06-07-2017 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 SUPERFAMILY SSF54506 145 277 3.14E-49 T 06-07-2017 APT55_RS16435 f11e4cf161518f2ad3729f63fa1b15bf 279 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 279 37.598 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 SUPERFAMILY SSF50346 6 73 2.98E-10 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 Gene3D G3DSA:2.30.30.240 85 154 9.6E-14 T 06-07-2017 APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 Gene3D G3DSA:2.30.30.240 7 74 1.0E-11 T 06-07-2017 APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 Pfam PF05239 PRC-barrel domain 84 159 3.6E-9 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 Pfam PF05239 PRC-barrel domain 5 73 8.5E-9 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS23680 a79bf0a8513c295ab243551a6618474d 380 SUPERFAMILY SSF50346 85 156 1.18E-11 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS09480 db6e75036ab265d78463e926c15e8e3b 131 SUPERFAMILY SSF160719 26 129 2.35E-28 T 06-07-2017 APT55_RS09480 db6e75036ab265d78463e926c15e8e3b 131 Pfam PF04965 Gene 25-like lysozyme 30 111 2.0E-17 T 06-07-2017 IPR007048 GpW/Gp25/anti-adapter protein IraD APT55_RS09480 db6e75036ab265d78463e926c15e8e3b 131 Gene3D G3DSA:3.10.450.40 3 128 6.4E-40 T 06-07-2017 APT55_RS10765 73bd12462bfdc8398821bcee3b52e67e 316 Pfam PF00535 Glycosyl transferase family 2 23 161 1.8E-16 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS10765 73bd12462bfdc8398821bcee3b52e67e 316 SUPERFAMILY SSF53448 21 237 5.63E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS10765 73bd12462bfdc8398821bcee3b52e67e 316 Gene3D G3DSA:3.90.550.10 24 174 5.0E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12965 878941c12c436dee96d08257257657f7 580 Pfam PF04966 Carbohydrate-selective porin, OprB family 141 580 1.2E-72 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS12965 878941c12c436dee96d08257257657f7 580 Pfam PF00395 S-layer homology domain 75 117 2.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS31505 1e1bdeac362df3e7f5ad78e4b1702e9f 324 Gene3D G3DSA:1.10.101.10 36 95 9.3E-6 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS31505 1e1bdeac362df3e7f5ad78e4b1702e9f 324 SUPERFAMILY SSF47090 32 92 3.66E-6 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS28025 c5710dc7d56893d742abfb60fc8dc77f 536 SUPERFAMILY SSF53448 154 283 1.78E-26 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS28025 c5710dc7d56893d742abfb60fc8dc77f 536 SUPERFAMILY SSF53448 316 396 1.78E-26 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS28025 c5710dc7d56893d742abfb60fc8dc77f 536 Gene3D G3DSA:3.90.550.10 156 397 9.9E-16 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS28025 c5710dc7d56893d742abfb60fc8dc77f 536 Pfam PF13641 Glycosyltransferase like family 2 154 381 9.5E-22 T 06-07-2017 APT55_RS30515 ded9c56b45b3ee26f43a57fc87dc3bad 44 Pfam PF08814 XisH protein 1 43 8.9E-16 T 06-07-2017 IPR014919 XisH protein APT55_RS30515 ded9c56b45b3ee26f43a57fc87dc3bad 44 Gene3D G3DSA:3.40.1350.10 1 43 8.8E-16 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS30515 ded9c56b45b3ee26f43a57fc87dc3bad 44 SUPERFAMILY SSF52980 4 43 8.04E-12 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SMART SM00567 E-Z type HEAT repeats 48 80 250.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SMART SM00567 E-Z type HEAT repeats 145 174 15.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SMART SM00567 E-Z type HEAT repeats 82 111 140.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SMART SM00567 E-Z type HEAT repeats 176 205 0.57 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SMART SM00567 E-Z type HEAT repeats 114 143 0.014 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 Gene3D G3DSA:1.25.10.10 8 218 4.2E-31 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 SUPERFAMILY SSF48371 8 217 6.24E-35 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS23550 cfc1ab94992e31a1310f41a6b9653aee 219 Pfam PF13646 HEAT repeats 110 176 1.1E-10 T 06-07-2017 APT55_RS23075 5b2de700caf9072da030d96f388c32bb 31 SUPERFAMILY SSF161029 1 29 1.83E-11 T 06-07-2017 APT55_RS23075 5b2de700caf9072da030d96f388c32bb 31 Hamap MF_00808 Photosystem II reaction center protein T [psbT]. 1 31 15.423 T 06-07-2017 IPR001743 Photosystem II PsbT GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS23075 5b2de700caf9072da030d96f388c32bb 31 Pfam PF01405 Photosystem II reaction centre T protein 1 29 6.7E-18 T 06-07-2017 IPR001743 Photosystem II PsbT GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 Pfam PF12770 CHAT domain 82 374 3.5E-25 T 06-07-2017 IPR024983 CHAT domain APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 Gene3D G3DSA:1.25.40.10 668 786 9.7E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 Gene3D G3DSA:1.25.40.10 480 565 9.7E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 Pfam PF13432 Tetratricopeptide repeat 488 547 1.0E-4 T 06-07-2017 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 SUPERFAMILY SSF48452 730 787 2.46E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 SUPERFAMILY SSF48452 480 554 2.46E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 SMART SM00028 481 514 4.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 SMART SM00028 515 548 2.9E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08875 acf3a7e6aaaf4d3e4d0f504eaf5f9245 869 SMART SM00028 757 790 71.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS27385 519d1eb3b681d1ceb733d30bb274b2e9 380 SUPERFAMILY SSF55931 3 359 1.08E-89 T 06-07-2017 APT55_RS27385 519d1eb3b681d1ceb733d30bb274b2e9 380 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 6 286 1.3E-56 T 06-07-2017 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT55_RS27385 519d1eb3b681d1ceb733d30bb274b2e9 380 TIGRFAM TIGR02048 gshA_cyano: putative glutamate--cysteine ligase 3 378 2.1E-202 T 06-07-2017 IPR011792 Glutamate--cysteine ligase, putative APT55_RS05540 3d6f19d34ae601d4c6ad07361d29c98d 278 Gene3D G3DSA:3.40.50.1820 53 133 8.5E-17 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS05540 3d6f19d34ae601d4c6ad07361d29c98d 278 Gene3D G3DSA:3.40.50.1820 189 267 8.5E-17 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS05540 3d6f19d34ae601d4c6ad07361d29c98d 278 SUPERFAMILY SSF53474 56 266 3.93E-22 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS25115 b88545461283f8e6f3dddb1be774b014 138 Pfam PF07845 Protein of unknown function (DUF1636) 6 123 6.7E-32 T 06-07-2017 IPR012863 Protein of unknown function DUF1636 APT55_RS12100 de34066b9de4f980af1aeb3acc52bda4 445 SUPERFAMILY SSF53850 62 304 1.63E-24 T 06-07-2017 APT55_RS12100 de34066b9de4f980af1aeb3acc52bda4 445 Gene3D G3DSA:3.40.190.10 188 293 1.1E-10 T 06-07-2017 APT55_RS12100 de34066b9de4f980af1aeb3acc52bda4 445 Pfam PF13379 NMT1-like family 54 315 2.6E-102 T 06-07-2017 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 7 277 3.5E-141 T 06-07-2017 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 Hamap MF_00533 Nitrogenase iron protein [nifH]. 6 278 52.122 T 06-07-2017 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 PIRSF PIRSF000363 5 279 3.8E-122 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 7 276 6.2E-138 T 06-07-2017 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 SUPERFAMILY SSF52540 7 282 1.86E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 Gene3D G3DSA:3.40.50.300 8 274 3.6E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 PRINTS PR00091 Nitrogenase component II signature 34 49 1.5E-37 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 PRINTS PR00091 Nitrogenase component II signature 127 142 1.5E-37 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 PRINTS PR00091 Nitrogenase component II signature 12 25 1.5E-37 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 PRINTS PR00091 Nitrogenase component II signature 89 103 1.5E-37 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 ProSitePatterns PS00692 NifH/frxC family signature 2. 128 141 - T 06-07-2017 IPR030655 NifH/chlL conserved site APT55_RS11615 7bb8f23201e1a759e99f1843076567bc 296 ProSitePatterns PS00746 NifH/frxC family signature 1. 91 103 - T 06-07-2017 IPR030655 NifH/chlL conserved site APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 Gene3D G3DSA:2.30.22.10 159 217 1.6E-25 T 06-07-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 Hamap MF_01151 Protein GrpE [grpE]. 3 215 18.87 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 PRINTS PR00773 GrpE protein signature 112 127 4.4E-28 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 PRINTS PR00773 GrpE protein signature 194 213 4.4E-28 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 PRINTS PR00773 GrpE protein signature 167 182 4.4E-28 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 PRINTS PR00773 GrpE protein signature 84 100 4.4E-28 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 SUPERFAMILY SSF51064 161 216 4.18E-18 T 06-07-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 SUPERFAMILY SSF58014 64 159 2.22E-27 T 06-07-2017 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 Pfam PF01025 GrpE 57 214 6.9E-49 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 Gene3D G3DSA:3.90.20.20 60 157 2.3E-27 T 06-07-2017 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 APT55_RS12500 b3b47977cb0b9eee69abf93b4ef81a27 227 ProSitePatterns PS01071 grpE protein signature. 170 213 - T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT55_RS26125 d1ff185542cf9a628946a263ecba2962 460 Pfam PF13440 Polysaccharide biosynthesis protein 33 323 2.6E-44 T 06-07-2017 APT55_RS03330 8cdd1cbcabc33ec7a451b349a173c876 347 Gene3D G3DSA:3.40.50.300 134 342 3.2E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03330 8cdd1cbcabc33ec7a451b349a173c876 347 Gene3D G3DSA:3.40.50.720 2 133 8.8E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS03330 8cdd1cbcabc33ec7a451b349a173c876 347 PIRSF PIRSF026760 4 347 1.6E-94 T 06-07-2017 IPR011669 Protein of unknown function DUF1611 APT55_RS03330 8cdd1cbcabc33ec7a451b349a173c876 347 SUPERFAMILY SSF52540 2 342 1.81E-101 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03330 8cdd1cbcabc33ec7a451b349a173c876 347 Pfam PF07755 Protein of unknown function (DUF1611) 39 336 2.3E-103 T 06-07-2017 IPR011669 Protein of unknown function DUF1611 APT55_RS04560 56cd38966c9c9a5d38f907076ee73dd6 128 Pfam PF00072 Response regulator receiver domain 19 116 5.8E-6 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04560 56cd38966c9c9a5d38f907076ee73dd6 128 SUPERFAMILY SSF52172 6 123 3.42E-14 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS04560 56cd38966c9c9a5d38f907076ee73dd6 128 Gene3D G3DSA:3.40.50.2300 17 122 2.8E-11 T 06-07-2017 APT55_RS13180 f216ab14a214ab6546010cf2c1e29502 224 Pfam PF02397 Bacterial sugar transferase 32 218 9.6E-57 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS21425 0737edb9cb366c75b539c899cf36d39f 315 Pfam PF07466 Protein of unknown function (DUF1517) 33 314 6.5E-108 T 06-07-2017 IPR010903 Protein of unknown function DUF1517 APT55_RS21425 0737edb9cb366c75b539c899cf36d39f 315 PIRSF PIRSF037221 4 315 2.5E-97 T 06-07-2017 IPR010903 Protein of unknown function DUF1517 APT55_RS27615 afc6f501dc0b6d47d2e85debd231e9fe 411 Gene3D G3DSA:3.40.50.2300 179 328 1.2E-7 T 06-07-2017 APT55_RS27615 afc6f501dc0b6d47d2e85debd231e9fe 411 Gene3D G3DSA:3.40.50.2300 43 178 9.7E-22 T 06-07-2017 APT55_RS27615 afc6f501dc0b6d47d2e85debd231e9fe 411 Pfam PF02608 Basic membrane protein 47 200 2.8E-9 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT55_RS18210 bfc6772f8de9d0d29e1f60898eb02a99 547 Pfam PF12706 Beta-lactamase superfamily domain 28 192 1.9E-12 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18210 bfc6772f8de9d0d29e1f60898eb02a99 547 SMART SM00849 16 208 1.1E-9 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18210 bfc6772f8de9d0d29e1f60898eb02a99 547 Gene3D G3DSA:3.60.15.10 4 234 2.2E-36 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS18210 bfc6772f8de9d0d29e1f60898eb02a99 547 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 342 384 4.5E-6 T 06-07-2017 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain APT55_RS18210 bfc6772f8de9d0d29e1f60898eb02a99 547 SUPERFAMILY SSF56281 4 409 1.44E-69 T 06-07-2017 IPR001279 Metallo-beta-lactamase APT55_RS28470 cff9894a72ae51dade3aeb41d1857260 148 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 33 96 9.3E-11 T 06-07-2017 APT55_RS28470 cff9894a72ae51dade3aeb41d1857260 148 Gene3D G3DSA:2.130.10.130 7 147 8.0E-11 T 06-07-2017 APT55_RS28470 cff9894a72ae51dade3aeb41d1857260 148 SUPERFAMILY SSF69318 3 147 6.67E-18 T 06-07-2017 APT55_RS06970 7e0bd09be9445101bd599811da9318c1 80 ProDom PD004772 I PHOTOSYSTEM SUBUNIT IV REACTION CENTER MEMBRANE PHOTOSYNTHESIS THYLAKOID CHLOROPLAST 9 68 5.0E-23 T 06-07-2017 IPR003375 Photosystem I PsaE, reaction centre subunit IV GO:0009522|GO:0009538|GO:0015979 APT55_RS06970 7e0bd09be9445101bd599811da9318c1 80 Pfam PF02427 Photosystem I reaction centre subunit IV / PsaE 2 68 3.8E-36 T 06-07-2017 IPR003375 Photosystem I PsaE, reaction centre subunit IV GO:0009522|GO:0009538|GO:0015979 APT55_RS06970 7e0bd09be9445101bd599811da9318c1 80 Hamap MF_00613 Photosystem I reaction center subunit IV [psaE]. 2 68 28.805 T 06-07-2017 IPR003375 Photosystem I PsaE, reaction centre subunit IV GO:0009522|GO:0009538|GO:0015979 APT55_RS06970 7e0bd09be9445101bd599811da9318c1 80 Gene3D G3DSA:2.30.30.50 2 73 5.7E-39 T 06-07-2017 APT55_RS06970 7e0bd09be9445101bd599811da9318c1 80 SUPERFAMILY SSF50090 1 72 1.82E-35 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 Gene3D G3DSA:3.20.20.140 22 50 5.7E-42 T 06-07-2017 APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 Gene3D G3DSA:3.20.20.140 82 321 5.7E-42 T 06-07-2017 APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 Pfam PF04909 Amidohydrolase 127 306 6.5E-14 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 SUPERFAMILY SSF51556 395 480 3.5E-38 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 SUPERFAMILY SSF51556 22 51 3.5E-38 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS02740 051b7418b4fe8c1271afec10a03775f6 512 SUPERFAMILY SSF51556 105 319 3.5E-38 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS07740 7b7288d1da912050d2c2eebb89c64b63 150 Gene3D G3DSA:3.40.50.1010 11 144 9.2E-9 T 06-07-2017 IPR029060 PIN domain-like APT55_RS07740 7b7288d1da912050d2c2eebb89c64b63 150 SUPERFAMILY SSF88723 12 144 1.54E-17 T 06-07-2017 IPR029060 PIN domain-like APT55_RS07740 7b7288d1da912050d2c2eebb89c64b63 150 Pfam PF01850 PIN domain 13 137 2.3E-14 T 06-07-2017 IPR002716 PIN domain APT55_RS03370 026544cd5052f8f11446039b95368a0c 253 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 47 239 3.2E-45 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase APT55_RS03370 026544cd5052f8f11446039b95368a0c 253 SUPERFAMILY SSF64438 1 249 9.34E-60 T 06-07-2017 IPR011324 Cytotoxic necrotizing factor-like, catalytic APT55_RS03370 026544cd5052f8f11446039b95368a0c 253 Gene3D G3DSA:3.60.140.10 38 249 1.3E-54 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase APT55_RS03370 026544cd5052f8f11446039b95368a0c 253 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 12 250 7.5E-59 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 78 9.7E-7 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 SUPERFAMILY SSF56176 177 352 1.28E-59 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 46 54 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Gene3D G3DSA:3.10.20.30 8 90 9.5E-25 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Pfam PF01799 [2Fe-2S] binding domain 89 155 3.5E-24 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 SUPERFAMILY SSF47741 89 196 1.83E-26 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Gene3D G3DSA:3.30.43.10 181 239 8.7E-20 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Gene3D G3DSA:3.30.465.10 240 353 4.0E-42 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 363 464 5.1E-31 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 SUPERFAMILY SSF54292 10 93 9.31E-18 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Gene3D G3DSA:3.30.390.50 365 465 1.6E-32 T 06-07-2017 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 13 464 1.8E-153 T 06-07-2017 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 SUPERFAMILY SSF55447 362 465 8.63E-31 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 189 353 2.7E-58 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 SMART SM01092 363 465 6.3E-32 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 Gene3D G3DSA:1.10.150.120 91 180 1.7E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 APT55_RS21625 dcbd0967f33b129d20fc89d8bdca77fd 469 PIRSF PIRSF036557 7 469 4.2E-156 T 06-07-2017 IPR012175 Xanthine dehydrogenase, small subunit, bacteria APT55_RS06735 2f2687c42f503469849541818a4d2ef4 168 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 121 142 - T 06-07-2017 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06735 2f2687c42f503469849541818a4d2ef4 168 SUPERFAMILY SSF143243 15 164 5.89E-49 T 06-07-2017 APT55_RS06735 2f2687c42f503469849541818a4d2ef4 168 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 39 158 6.8E-37 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06735 2f2687c42f503469849541818a4d2ef4 168 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 94 149 4.0E-25 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06735 2f2687c42f503469849541818a4d2ef4 168 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 28 168 27.296 T 06-07-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS15745 45327ab5947adf498b13509b94553424 276 Pfam PF04773 FecR protein 65 166 5.9E-10 T 06-07-2017 IPR006860 FecR protein APT55_RS22520 ea32f4c9e0445511345633d0ae812fed 453 Pfam PF17150 C-terminal domain of two-partite extracellular sensor domain 149 221 6.5E-20 T 06-07-2017 IPR033415 C-terminal domain of two-partite extracellular sensor domain APT55_RS22520 ea32f4c9e0445511345633d0ae812fed 453 Pfam PF10069 Sensory domain in DIguanylate Cyclases and Two-component system 19 134 1.6E-35 T 06-07-2017 IPR019278 DICT domain APT55_RS22520 ea32f4c9e0445511345633d0ae812fed 453 Pfam PF13487 HD domain 321 369 1.0E-16 T 06-07-2017 APT55_RS00395 e529b4077a57fc55a1a9e901c19d824d 388 Pfam PF05150 Legionella pneumophila major outer membrane protein precursor 188 352 7.4E-9 T 06-07-2017 IPR007825 Major outer membrane precursor, Legionella pneumophila APT55_RS08950 23ac2b80644f6462a49758133329ae27 412 Pfam PF00535 Glycosyl transferase family 2 70 244 6.5E-20 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS08950 23ac2b80644f6462a49758133329ae27 412 SUPERFAMILY SSF53448 53 328 2.72E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS08950 23ac2b80644f6462a49758133329ae27 412 Gene3D G3DSA:3.90.550.10 69 303 8.4E-32 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS24060 aebce61bb4655cc4b9307e5355b7e6d9 420 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 12 416 7.9E-183 T 06-07-2017 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 APT55_RS24060 aebce61bb4655cc4b9307e5355b7e6d9 420 SUPERFAMILY SSF53383 11 412 1.64E-123 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS24060 aebce61bb4655cc4b9307e5355b7e6d9 420 Gene3D G3DSA:3.90.1150.10 289 410 2.9E-28 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS24060 aebce61bb4655cc4b9307e5355b7e6d9 420 Pfam PF00266 Aminotransferase class-V 30 404 4.8E-144 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS24060 aebce61bb4655cc4b9307e5355b7e6d9 420 Gene3D G3DSA:3.40.640.10 43 288 2.1E-83 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS11125 e273f8080922b54505ba346b7753570d 350 Pfam PF14907 Uncharacterised nucleotidyltransferase 61 277 4.5E-17 T 06-07-2017 APT55_RS27680 f9c23dba6725c88c9af72a913c266c22 234 Gene3D G3DSA:1.20.144.10 57 220 7.3E-30 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS27680 f9c23dba6725c88c9af72a913c266c22 234 SUPERFAMILY SSF48317 45 226 3.27E-39 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS27680 f9c23dba6725c88c9af72a913c266c22 234 Pfam PF01569 PAP2 superfamily 110 223 2.4E-21 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS27680 f9c23dba6725c88c9af72a913c266c22 234 SMART SM00014 109 219 2.4E-18 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS01155 3cb3eca5d64563e4992e513eb6789677 175 SUPERFAMILY SSF52540 17 170 7.64E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01155 3cb3eca5d64563e4992e513eb6789677 175 Pfam PF00406 Adenylate kinase 8 145 1.7E-12 T 06-07-2017 APT55_RS01155 3cb3eca5d64563e4992e513eb6789677 175 Gene3D G3DSA:3.40.50.300 7 169 3.9E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22635 a61f705d82f34f52df0a187647cba4e8 615 SMART SM00327 38 212 2.9E-21 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22635 a61f705d82f34f52df0a187647cba4e8 615 Gene3D G3DSA:3.40.50.410 36 209 1.6E-22 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22635 a61f705d82f34f52df0a187647cba4e8 615 Pfam PF00092 von Willebrand factor type A domain 40 208 2.7E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS22635 a61f705d82f34f52df0a187647cba4e8 615 SUPERFAMILY SSF53300 35 210 2.4E-29 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS13945 59807dbff0f37ae8df1a188aed1988de 326 SMART SM00382 51 233 5.5E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS13945 59807dbff0f37ae8df1a188aed1988de 326 SUPERFAMILY SSF52540 21 252 3.48E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13945 59807dbff0f37ae8df1a188aed1988de 326 Gene3D G3DSA:3.40.50.300 17 255 8.7E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13945 59807dbff0f37ae8df1a188aed1988de 326 Pfam PF00005 ABC transporter 42 185 4.4E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS13945 59807dbff0f37ae8df1a188aed1988de 326 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 SMART SM00387 331 443 1.2E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 SUPERFAMILY SSF47384 209 283 1.55E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 442 5.9E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 SMART SM00388 218 285 2.8E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 Gene3D G3DSA:1.10.287.130 215 270 3.7E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 283 5.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 Gene3D G3DSA:3.30.565.10 271 442 6.9E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 440 5.0E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 5.0E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 5.0E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 5.0E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS29040 7ad7715db8c287b03263a40d66c7961a 443 SUPERFAMILY SSF55874 274 441 2.49E-47 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23365 34081625a2b24b0f2f844025ac845778 353 Pfam PF13191 AAA ATPase domain 9 151 6.2E-8 T 06-07-2017 APT55_RS23365 34081625a2b24b0f2f844025ac845778 353 SUPERFAMILY SSF52540 139 252 1.39E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23365 34081625a2b24b0f2f844025ac845778 353 SUPERFAMILY SSF52540 4 77 1.39E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23365 34081625a2b24b0f2f844025ac845778 353 Gene3D G3DSA:3.40.50.300 8 179 3.9E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14800 4bb83fa59e89034f3bbfcc670918911d 497 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 210 447 6.3E-54 T 06-07-2017 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 APT55_RS14800 4bb83fa59e89034f3bbfcc670918911d 497 Pfam PF07670 Nucleoside recognition 104 200 1.4E-5 T 06-07-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APT55_RS14800 4bb83fa59e89034f3bbfcc670918911d 497 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 83 1.9E-20 T 06-07-2017 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 APT55_RS07805 f44367445176e5c4117cee331da497b8 220 SUPERFAMILY SSF161111 14 218 3.79E-38 T 06-07-2017 APT55_RS07805 f44367445176e5c4117cee331da497b8 220 Gene3D G3DSA:1.20.1510.10 16 218 2.5E-46 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain APT55_RS07805 f44367445176e5c4117cee331da497b8 220 Pfam PF01545 Cation efflux family 21 218 7.5E-29 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS07805 f44367445176e5c4117cee331da497b8 220 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 93 218 7.8E-32 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS15735 218202608ed5e4be319b4feb501c8588 186 SUPERFAMILY SSF52980 1 183 5.9E-49 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS15735 218202608ed5e4be319b4feb501c8588 186 Gene3D G3DSA:3.90.1570.10 5 183 2.1E-59 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS15735 218202608ed5e4be319b4feb501c8588 186 Pfam PF05685 Putative restriction endonuclease 12 182 8.8E-36 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS20770 e01ab85d44005f6be0242d6e0d65a775 210 SUPERFAMILY SSF53328 21 203 3.14E-59 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS20770 e01ab85d44005f6be0242d6e0d65a775 210 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 22 207 30.962 T 06-07-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 APT55_RS20770 e01ab85d44005f6be0242d6e0d65a775 210 Gene3D G3DSA:3.40.50.170 21 203 6.1E-65 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS20770 e01ab85d44005f6be0242d6e0d65a775 210 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 22 207 6.9E-73 T 06-07-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 APT55_RS20770 e01ab85d44005f6be0242d6e0d65a775 210 Pfam PF00551 Formyl transferase 22 201 6.9E-54 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT55_RS00985 7cb7e962e3722d5c1d92d2d2a6301907 48 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 2 45 2.3E-17 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00985 7cb7e962e3722d5c1d92d2d2a6301907 48 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 4 40 9.0E-9 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00985 7cb7e962e3722d5c1d92d2d2a6301907 48 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 2 45 15.873 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00985 7cb7e962e3722d5c1d92d2d2a6301907 48 Pfam PF00468 Ribosomal protein L34 2 45 2.8E-16 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS00985 7cb7e962e3722d5c1d92d2d2a6301907 48 ProSitePatterns PS00784 Ribosomal protein L34 signature. 3 22 - T 06-07-2017 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Pfam PF02563 Polysaccharide biosynthesis/export protein 48 120 5.5E-18 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Gene3D G3DSA:3.30.1950.10 56 119 5.2E-16 T 06-07-2017 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Gene3D G3DSA:3.10.560.10 238 348 1.4E-21 T 06-07-2017 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Gene3D G3DSA:3.10.560.10 120 214 1.5E-24 T 06-07-2017 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Gene3D G3DSA:3.10.560.10 368 455 1.7E-12 T 06-07-2017 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Pfam PF10531 SLBB domain 286 320 0.011 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Pfam PF10531 SLBB domain 374 423 1.2E-9 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS16370 378b136e14764102bca1d3f534697146 480 Pfam PF10531 SLBB domain 127 180 2.6E-6 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS23705 1fd994bf67d19323c71d776f9f975c80 416 SUPERFAMILY SSF55729 124 341 5.88E-19 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS23705 1fd994bf67d19323c71d776f9f975c80 416 Gene3D G3DSA:3.40.630.30 11 169 8.1E-10 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS23705 1fd994bf67d19323c71d776f9f975c80 416 SUPERFAMILY SSF55729 9 169 1.89E-10 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS22995 02e4eab9d4106d72fec6dd1161f40238 392 Gene3D G3DSA:3.90.25.10 243 391 4.3E-24 T 06-07-2017 APT55_RS22995 02e4eab9d4106d72fec6dd1161f40238 392 Gene3D G3DSA:3.40.50.720 47 242 1.9E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22995 02e4eab9d4106d72fec6dd1161f40238 392 SUPERFAMILY SSF51735 47 387 3.36E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS22995 02e4eab9d4106d72fec6dd1161f40238 392 Pfam PF01370 NAD dependent epimerase/dehydratase family 54 306 2.5E-42 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS00505 d5654bb32b0ac2e62a308cc60b961153 233 Pfam PF07819 PGAP1-like protein 48 125 6.3E-6 T 06-07-2017 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 APT55_RS00505 d5654bb32b0ac2e62a308cc60b961153 233 Gene3D G3DSA:3.40.50.1820 4 212 8.6E-23 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS00505 d5654bb32b0ac2e62a308cc60b961153 233 SUPERFAMILY SSF53474 4 230 9.99E-17 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS24705 a096af771f063b995464dff6f1684479 212 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 06-07-2017 IPR019926 Ribosomal protein L3, conserved site APT55_RS24705 a096af771f063b995464dff6f1684479 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 203 3.5E-86 T 06-07-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24705 a096af771f063b995464dff6f1684479 212 Pfam PF00297 Ribosomal protein L3 85 182 1.9E-12 T 06-07-2017 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24705 a096af771f063b995464dff6f1684479 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 207 39.604 T 06-07-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24705 a096af771f063b995464dff6f1684479 212 Gene3D G3DSA:4.10.960.10 78 157 9.0E-30 T 06-07-2017 APT55_RS24705 a096af771f063b995464dff6f1684479 212 SUPERFAMILY SSF50447 3 209 2.38E-78 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain APT55_RS24705 a096af771f063b995464dff6f1684479 212 Gene3D G3DSA:2.40.30.10 158 203 8.2E-9 T 06-07-2017 APT55_RS24705 a096af771f063b995464dff6f1684479 212 Gene3D G3DSA:2.40.30.10 4 33 8.2E-9 T 06-07-2017 APT55_RS06220 0cbab28f8f49a7758c6f6338c7287182 142 SUPERFAMILY SSF82771 25 106 5.1E-9 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS06220 0cbab28f8f49a7758c6f6338c7287182 142 SMART SM00465 25 107 8.6E-6 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS06220 0cbab28f8f49a7758c6f6338c7287182 142 Pfam PF01541 GIY-YIG catalytic domain 36 100 5.1E-5 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily APT55_RS08250 43816d99b66e61765a261d694f5ed588 92 Pfam PF08846 Domain of unknown function (DUF1816) 11 73 1.4E-30 T 06-07-2017 IPR014945 Protein of unknown function DUF1816 APT55_RS16215 69f4fa92bae8f6ca45ec8bc0343a3d26 364 SUPERFAMILY SSF53800 1 328 1.57E-56 T 06-07-2017 APT55_RS16215 69f4fa92bae8f6ca45ec8bc0343a3d26 364 Gene3D G3DSA:3.40.50.1400 58 201 1.4E-14 T 06-07-2017 APT55_RS16215 69f4fa92bae8f6ca45ec8bc0343a3d26 364 Gene3D G3DSA:3.40.50.1400 216 320 7.6E-13 T 06-07-2017 APT55_RS16215 69f4fa92bae8f6ca45ec8bc0343a3d26 364 Pfam PF00762 Ferrochelatase 1 319 4.2E-60 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT55_RS09460 ff768d3a8f30e9753098f9e08d1e1e0c 283 Pfam PF14261 Domain of unknown function (DUF4351) 219 278 8.8E-20 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS09460 ff768d3a8f30e9753098f9e08d1e1e0c 283 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 3 225 2.2E-16 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS09460 ff768d3a8f30e9753098f9e08d1e1e0c 283 Pfam PF11103 Protein of unknown function (DUF2887) 3 203 1.8E-74 T 06-07-2017 IPR022573 Protein of unknown function DUF2887 APT55_RS18170 e119990dfd88b4099a1a1abc30ffc128 85 Gene3D G3DSA:3.10.20.30 6 85 9.4E-21 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS18170 e119990dfd88b4099a1a1abc30ffc128 85 Pfam PF02597 ThiS family 9 85 6.9E-17 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 APT55_RS18170 e119990dfd88b4099a1a1abc30ffc128 85 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 7 85 9.1E-14 T 06-07-2017 IPR010038 MoaD, archaeal-type APT55_RS18170 e119990dfd88b4099a1a1abc30ffc128 85 SUPERFAMILY SSF54285 5 83 1.64E-18 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT55_RS03820 d0a1453d3166cf60faacbb77714f55b7 193 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 191 25.289 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 APT55_RS03820 d0a1453d3166cf60faacbb77714f55b7 193 Gene3D G3DSA:3.40.50.300 1 192 4.7E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03820 d0a1453d3166cf60faacbb77714f55b7 193 Pfam PF01121 Dephospho-CoA kinase 3 178 2.7E-59 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 APT55_RS03820 d0a1453d3166cf60faacbb77714f55b7 193 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 186 4.8E-61 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 APT55_RS03820 d0a1453d3166cf60faacbb77714f55b7 193 SUPERFAMILY SSF52540 1 191 2.12E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01140 5342029ab26ee82a8a7fa2cc67210aa0 142 SUPERFAMILY SSF55811 3 136 8.67E-26 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS01140 5342029ab26ee82a8a7fa2cc67210aa0 142 Gene3D G3DSA:3.90.79.10 3 131 1.4E-34 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS01140 5342029ab26ee82a8a7fa2cc67210aa0 142 Pfam PF00293 NUDIX domain 14 127 1.9E-17 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 APT55_RS24435 eec0348595c4860079479b4ef38faba0 138 Gene3D G3DSA:2.170.150.20 6 137 7.7E-60 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS24435 eec0348595c4860079479b4ef38faba0 138 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 12 136 1.5E-55 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS24435 eec0348595c4860079479b4ef38faba0 138 Pfam PF01641 SelR domain 16 134 1.2E-51 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT55_RS24435 eec0348595c4860079479b4ef38faba0 138 SUPERFAMILY SSF51316 11 136 2.2E-57 T 06-07-2017 IPR011057 Mss4-like APT55_RS28145 86a147540b2553604549dc4598ac3704 191 Pfam PF03358 NADPH-dependent FMN reductase 9 134 1.2E-25 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT55_RS28145 86a147540b2553604549dc4598ac3704 191 Gene3D G3DSA:3.40.50.360 3 182 1.6E-35 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS28145 86a147540b2553604549dc4598ac3704 191 SUPERFAMILY SSF52218 7 174 1.93E-31 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS02310 1e4c0bf492ab2ab1be4f5ef6ce2d2a4f 371 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 44 347 2.8E-67 T 06-07-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like APT55_RS02310 1e4c0bf492ab2ab1be4f5ef6ce2d2a4f 371 Pfam PF02618 YceG-like family 53 346 1.5E-81 T 06-07-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like APT55_RS02310 1e4c0bf492ab2ab1be4f5ef6ce2d2a4f 371 Gene3D G3DSA:3.30.160.60 322 350 2.6E-12 T 06-07-2017 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 APT55_RS23795 08b735d8995c66bf178e16194a0717a7 206 Pfam PF06055 Exopolysaccharide synthesis, ExoD 13 190 2.4E-59 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD APT55_RS23795 08b735d8995c66bf178e16194a0717a7 206 PIRSF PIRSF033239 1 205 1.8E-60 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD APT55_RS18275 2ac7e5f06c44c96b5dacfcad4022ad4c 85 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 8 61 2.1E-13 T 06-07-2017 IPR025528 BrnA antitoxin of type II toxin-antitoxin system APT55_RS05400 f110472dfb5a7158d19feb141773dad6 471 Gene3D G3DSA:3.30.70.1380 316 405 3.5E-30 T 06-07-2017 APT55_RS05400 f110472dfb5a7158d19feb141773dad6 471 Gene3D G3DSA:3.10.20.300 406 467 1.3E-22 T 06-07-2017 APT55_RS05400 f110472dfb5a7158d19feb141773dad6 471 Pfam PF01969 Protein of unknown function DUF111 6 455 5.3E-152 T 06-07-2017 IPR002822 Uncharacterised protein family UPF0272 APT55_RS05400 f110472dfb5a7158d19feb141773dad6 471 Hamap MF_01074 UPF0272 protein . 2 464 43.35 T 06-07-2017 IPR002822 Uncharacterised protein family UPF0272 APT55_RS05400 f110472dfb5a7158d19feb141773dad6 471 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 4 455 6.2E-127 T 06-07-2017 IPR002822 Uncharacterised protein family UPF0272 APT55_RS22895 fa305b1e2cd7d41ec0b6d222e5787ecf 276 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 3 221 2.9E-15 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS22895 fa305b1e2cd7d41ec0b6d222e5787ecf 276 Pfam PF14261 Domain of unknown function (DUF4351) 214 272 3.5E-21 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS22895 fa305b1e2cd7d41ec0b6d222e5787ecf 276 Pfam PF11103 Protein of unknown function (DUF2887) 3 202 4.0E-73 T 06-07-2017 IPR022573 Protein of unknown function DUF2887 APT55_RS11120 3067da9b3d0c4a63b1f31d69b0db700a 147 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 20 86 3.1E-11 T 06-07-2017 IPR008792 Coenzyme PQQ synthesis D APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 665 677 - T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 Gene3D G3DSA:3.40.50.2000 491 805 3.0E-140 T 06-07-2017 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 PIRSF PIRSF000460 7 834 2.8E-240 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 Pfam PF00343 Carbohydrate phosphorylase 108 820 0.0 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 SUPERFAMILY SSF53756 16 824 0.0 T 06-07-2017 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 20 820 0.0 T 06-07-2017 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS10475 3f9aa36cc2d54b75b6a4ebbf93679927 841 Gene3D G3DSA:3.40.50.2000 18 490 5.7E-206 T 06-07-2017 APT55_RS27910 170b449b8b6d594416d5f1c3b607ed4a 185 Gene3D G3DSA:3.40.50.620 32 136 2.6E-10 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS27910 170b449b8b6d594416d5f1c3b607ed4a 185 Pfam PF02698 DUF218 domain 39 144 9.5E-14 T 06-07-2017 IPR003848 Domain of unknown function DUF218 APT55_RS24710 dbb8f18257013870f9c8c5e354f59c2a 211 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 209 35.087 T 06-07-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24710 dbb8f18257013870f9c8c5e354f59c2a 211 Gene3D G3DSA:3.40.1370.10 58 208 4.9E-59 T 06-07-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 APT55_RS24710 dbb8f18257013870f9c8c5e354f59c2a 211 SUPERFAMILY SSF52166 1 208 2.75E-73 T 06-07-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 APT55_RS24710 dbb8f18257013870f9c8c5e354f59c2a 211 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 27 206 1.3E-70 T 06-07-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS24710 dbb8f18257013870f9c8c5e354f59c2a 211 Pfam PF00573 Ribosomal protein L4/L1 family 30 206 3.8E-64 T 06-07-2017 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 APT55_RS17635 df66d9aa26c29b008dab02a71492a6d3 275 SUPERFAMILY SSF110399 14 259 2.09E-84 T 06-07-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APT55_RS17635 df66d9aa26c29b008dab02a71492a6d3 275 Hamap MF_00443 Thiazole synthase [thiG]. 15 274 44.907 T 06-07-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APT55_RS17635 df66d9aa26c29b008dab02a71492a6d3 275 Gene3D G3DSA:3.20.20.70 17 273 2.1E-59 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS17635 df66d9aa26c29b008dab02a71492a6d3 275 Pfam PF05690 Thiazole biosynthesis protein ThiG 18 268 4.0E-112 T 06-07-2017 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 SUPERFAMILY SSF46911 13 68 5.36E-26 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 17 68 3.0E-21 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 ProSitePatterns PS00057 Ribosomal protein S18 signature. 17 40 - T 06-07-2017 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 1 69 22.016 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 68 1.5E-30 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 Pfam PF01084 Ribosomal protein S18 15 64 9.1E-28 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 Gene3D G3DSA:4.10.640.10 17 68 2.3E-31 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 PRINTS PR00974 Ribosomal protein S18 family signature 34 41 1.2E-22 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 PRINTS PR00974 Ribosomal protein S18 family signature 56 66 1.2E-22 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 PRINTS PR00974 Ribosomal protein S18 family signature 24 34 1.2E-22 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS07780 e4d86787e7aa7a3682eda05af4df916d 71 PRINTS PR00974 Ribosomal protein S18 family signature 42 56 1.2E-22 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14430 6f8d60ce04dec630cf2d9348351d304e 321 SUPERFAMILY SSF51730 18 304 3.73E-75 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like APT55_RS14430 6f8d60ce04dec630cf2d9348351d304e 321 Gene3D G3DSA:3.20.20.220 17 305 8.6E-58 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like APT55_RS14430 6f8d60ce04dec630cf2d9348351d304e 321 Pfam PF02219 Methylenetetrahydrofolate reductase 19 303 1.4E-56 T 06-07-2017 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Pfam PF00501 AMP-binding enzyme 24 503 2.3E-99 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Gene3D G3DSA:3.40.50.980 16 198 7.7E-31 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Gene3D G3DSA:3.40.50.980 359 416 1.2E-25 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Gene3D G3DSA:3.40.50.980 199 288 1.2E-25 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Gene3D G3DSA:3.30.300.30 499 616 3.2E-4 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 Gene3D G3DSA:2.30.38.10 422 494 5.8E-25 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 SUPERFAMILY SSF56801 13 293 3.27E-110 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 SUPERFAMILY SSF56801 362 624 3.27E-110 T 06-07-2017 APT55_RS05645 0fc7ab9375199209558a7e827098bde4 627 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS07350 c03e3c632dacbe2bc77004c7cd11b200 113 Pfam PF00699 Urease beta subunit 3 99 5.1E-48 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07350 c03e3c632dacbe2bc77004c7cd11b200 113 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 33.716 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07350 c03e3c632dacbe2bc77004c7cd11b200 113 SUPERFAMILY SSF51278 1 106 1.1E-49 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07350 c03e3c632dacbe2bc77004c7cd11b200 113 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 103 8.9E-50 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS07350 c03e3c632dacbe2bc77004c7cd11b200 113 Gene3D G3DSA:2.10.150.10 1 108 3.0E-54 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APT55_RS22035 b7221464f0e5fbd496acc5425176d586 250 PIRSF PIRSF005898 1 246 9.9E-66 T 06-07-2017 IPR016470 Phycobilisome linker protein GO:0015979|GO:0030089 APT55_RS22035 b7221464f0e5fbd496acc5425176d586 250 Pfam PF00427 Phycobilisome Linker polypeptide 37 159 3.4E-43 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS22035 b7221464f0e5fbd496acc5425176d586 250 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 44 174 6.0E-54 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 Pfam PF13476 AAA domain 5 252 4.4E-21 T 06-07-2017 APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 Gene3D G3DSA:3.40.50.300 1 94 1.4E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 Gene3D G3DSA:3.40.50.300 792 916 1.2E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 SUPERFAMILY SSF52540 827 914 2.11E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 SUPERFAMILY SSF52540 1 91 2.11E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09230 1fc8f500b1b93b5b04289740f3f9a25d 918 SUPERFAMILY SSF52540 120 173 2.11E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08390 bd5a404519f4a97aba78fff6c0a245fd 257 SUPERFAMILY SSF54001 93 202 4.32E-5 T 06-07-2017 APT55_RS08390 bd5a404519f4a97aba78fff6c0a245fd 257 Pfam PF13529 Peptidase_C39 like family 86 209 3.9E-20 T 06-07-2017 APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 Gene3D G3DSA:3.40.250.10 141 275 7.5E-35 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 Pfam PF00581 Rhodanese-like domain 11 118 2.6E-12 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 Pfam PF00581 Rhodanese-like domain 149 266 1.2E-19 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 Gene3D G3DSA:3.40.250.10 2 133 1.5E-30 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 SMART SM00450 146 271 4.0E-22 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 SMART SM00450 9 122 4.6E-13 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 SUPERFAMILY SSF52821 7 173 1.14E-29 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 SUPERFAMILY SSF52821 141 274 5.37E-37 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS04280 0c9b1d312070a768253300ad4737522c 275 ProSitePatterns PS00683 Rhodanese C-terminal signature. 255 265 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 APT55_RS31535 c203861f9961ef4a5511e3cd6baef52c 204 Gene3D G3DSA:1.25.10.10 94 200 1.6E-4 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS31535 c203861f9961ef4a5511e3cd6baef52c 204 SUPERFAMILY SSF48371 86 201 9.22E-6 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS24330 5125cf3f4fec6e1e2b0384535ef5f6e1 123 SUPERFAMILY SSF143100 15 62 1.57E-7 T 06-07-2017 APT55_RS31630 f72a2b0ff775d5ded99f90d9600a2b57 673 Pfam PF00805 Pentapeptide repeats (8 copies) 358 397 2.0E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31630 f72a2b0ff775d5ded99f90d9600a2b57 673 Pfam PF00805 Pentapeptide repeats (8 copies) 267 290 3.8E-5 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31630 f72a2b0ff775d5ded99f90d9600a2b57 673 Pfam PF00805 Pentapeptide repeats (8 copies) 15 53 4.1E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS31630 f72a2b0ff775d5ded99f90d9600a2b57 673 SUPERFAMILY SSF141571 10 54 2.75E-11 T 06-07-2017 APT55_RS31630 f72a2b0ff775d5ded99f90d9600a2b57 673 SUPERFAMILY SSF141571 267 411 5.4E-26 T 06-07-2017 APT55_RS04170 31acf76c38ad454ac53ed3c35a9cf07c 636 Gene3D G3DSA:1.10.10.10 406 450 1.4E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04170 31acf76c38ad454ac53ed3c35a9cf07c 636 SUPERFAMILY SSF52540 160 368 3.8E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04170 31acf76c38ad454ac53ed3c35a9cf07c 636 SUPERFAMILY SSF46785 393 452 1.51E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04170 31acf76c38ad454ac53ed3c35a9cf07c 636 Gene3D G3DSA:3.40.50.300 156 368 2.2E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04170 31acf76c38ad454ac53ed3c35a9cf07c 636 Pfam PF13481 AAA domain 145 317 4.2E-24 T 06-07-2017 APT55_RS18410 8536500cb9cfb3cd1ec9d03806372d88 369 Pfam PF03600 Citrate transporter 14 306 4.5E-29 T 06-07-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 APT55_RS18410 8536500cb9cfb3cd1ec9d03806372d88 369 PRINTS PR00758 Arsenical pump membrane protein signature 240 264 2.5E-5 T 06-07-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT55_RS18410 8536500cb9cfb3cd1ec9d03806372d88 369 PRINTS PR00758 Arsenical pump membrane protein signature 77 101 2.5E-5 T 06-07-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT55_RS08845 2b03dac0b14ead56c5e14c921e241bec 284 PIRSF PIRSF016753 3 282 1.2E-70 T 06-07-2017 IPR016676 Phospholipid/glycerol acyltransferase, predicted APT55_RS08845 2b03dac0b14ead56c5e14c921e241bec 284 Pfam PF03982 Diacylglycerol acyltransferase 123 261 2.2E-5 T 06-07-2017 IPR007130 Diacylglycerol acyltransferase GO:0016747 APT55_RS08845 2b03dac0b14ead56c5e14c921e241bec 284 SUPERFAMILY SSF69593 18 179 1.83E-8 T 06-07-2017 APT55_RS08845 2b03dac0b14ead56c5e14c921e241bec 284 SUPERFAMILY SSF69593 209 275 1.83E-8 T 06-07-2017 APT55_RS27885 21f2f885205efeca06aa02e623017e1b 387 Pfam PF00534 Glycosyl transferases group 1 183 346 4.0E-33 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS27885 21f2f885205efeca06aa02e623017e1b 387 Gene3D G3DSA:3.40.50.2000 186 339 1.6E-22 T 06-07-2017 APT55_RS27885 21f2f885205efeca06aa02e623017e1b 387 SUPERFAMILY SSF53756 22 363 1.12E-55 T 06-07-2017 APT55_RS15105 d65aafdc6b10fa82c96d259da1eb880c 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 278 2.3E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15105 d65aafdc6b10fa82c96d259da1eb880c 279 SUPERFAMILY SSF161098 70 262 1.06E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15105 d65aafdc6b10fa82c96d259da1eb880c 279 Gene3D G3DSA:1.10.3720.10 69 276 2.2E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS15105 d65aafdc6b10fa82c96d259da1eb880c 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 52 1.5E-5 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 Gene3D G3DSA:3.30.200.20 7 82 3.3E-19 T 06-07-2017 APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 Gene3D G3DSA:1.10.510.10 83 265 2.2E-38 T 06-07-2017 APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 20 43 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 SUPERFAMILY SSF56112 11 359 3.1E-63 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 SMART SM00220 14 274 6.1E-40 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS29190 3dc1637a72377b49cc5a2e558c36df8b 547 Pfam PF00069 Protein kinase domain 14 225 2.3E-42 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS02220 c6bbb8fabc019697f33070baee71e3a0 203 Gene3D G3DSA:3.90.1570.10 19 203 6.0E-66 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS02220 c6bbb8fabc019697f33070baee71e3a0 203 SUPERFAMILY SSF52980 20 203 1.02E-51 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS02220 c6bbb8fabc019697f33070baee71e3a0 203 Pfam PF05685 Putative restriction endonuclease 29 199 2.1E-37 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS14465 54193741ce71e5720efb19b77da69d82 115 Gene3D G3DSA:2.30.30.110 12 114 6.5E-9 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS14465 54193741ce71e5720efb19b77da69d82 115 SUPERFAMILY SSF50118 6 115 4.8E-17 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS14465 54193741ce71e5720efb19b77da69d82 115 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 10 112 6.3E-11 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 112 177 5.0E-24 T 06-07-2017 APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 5 72 4.0E-21 T 06-07-2017 APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 SMART SM00877 10 86 3.2E-25 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 SMART SM00877 115 191 1.2E-27 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 SUPERFAMILY SSF143414 10 97 1.44E-24 T 06-07-2017 APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 28 47 - T 06-07-2017 IPR020808 Bacterial microcompartments protein, conserved site APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 SUPERFAMILY SSF143414 116 205 1.22E-25 T 06-07-2017 APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 Pfam PF00936 BMC domain 116 190 8.5E-23 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS20690 2ed8db7032d2205a14a1e373e331eeb7 292 Pfam PF00936 BMC domain 11 86 1.0E-20 T 06-07-2017 IPR000249 Microcompartment protein, bacteria APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 SUPERFAMILY SSF48452 236 362 9.01E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 Pfam PF13181 Tetratricopeptide repeat 329 360 9.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 SMART SM00028 328 361 1.5E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 SMART SM00028 255 288 0.0014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 SMART SM00028 289 327 160.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS13695 d5a924da9d291f86fd267c3de78892d1 390 Gene3D G3DSA:1.25.40.10 237 363 2.0E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20030 ed1c53d4eed86421f4ee29da8aae366e 124 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 33 116 8.0E-4 T 06-07-2017 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT55_RS20030 ed1c53d4eed86421f4ee29da8aae366e 124 SUPERFAMILY SSF51182 24 117 4.9E-25 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS20030 ed1c53d4eed86421f4ee29da8aae366e 124 Pfam PF07883 Cupin domain 40 107 6.4E-14 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS20030 ed1c53d4eed86421f4ee29da8aae366e 124 Gene3D G3DSA:2.60.120.10 27 116 5.8E-23 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS18515 9c94afa1b30f15df0a20d7fcab743850 381 Pfam PF01594 Domain of unknown function DUF20 15 336 1.5E-58 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS01390 07f9aa7ae090366a3c8bbd414e4e3065 159 Pfam PF07617 Protein of unknown function (DUF1579) 6 157 5.8E-59 T 06-07-2017 IPR011473 Protein of unknown function DUF1579 APT55_RS04365 4b21d2abf4f9cbed2d58adaa317ed475 447 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 180 4.6E-18 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS04365 4b21d2abf4f9cbed2d58adaa317ed475 447 Gene3D G3DSA:3.40.630.40 3 184 5.6E-25 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS04365 4b21d2abf4f9cbed2d58adaa317ed475 447 SMART SM00646 68 181 9.7E-4 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS04365 4b21d2abf4f9cbed2d58adaa317ed475 447 SUPERFAMILY SSF53187 3 183 9.73E-18 T 06-07-2017 APT55_RS04365 4b21d2abf4f9cbed2d58adaa317ed475 447 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 318 441 2.5E-14 T 06-07-2017 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 APT55_RS30100 6211098d0d7ca4e81c7124d431bf3c8c 563 SUPERFAMILY SSF52540 287 515 1.89E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30100 6211098d0d7ca4e81c7124d431bf3c8c 563 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 308 435 5.2E-25 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS30100 6211098d0d7ca4e81c7124d431bf3c8c 563 SMART SM00382 304 438 7.2E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS30100 6211098d0d7ca4e81c7124d431bf3c8c 563 Gene3D G3DSA:1.10.8.60 445 519 6.3E-6 T 06-07-2017 APT55_RS30100 6211098d0d7ca4e81c7124d431bf3c8c 563 Gene3D G3DSA:3.40.50.300 291 444 4.5E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26105 68810a66423d1675a770301fb5d4a7c8 273 Gene3D G3DSA:1.10.3720.10 4 260 1.7E-68 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS26105 68810a66423d1675a770301fb5d4a7c8 273 SUPERFAMILY SSF161098 5 273 2.15E-74 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS26105 68810a66423d1675a770301fb5d4a7c8 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 264 4.2E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 Gene3D G3DSA:1.10.10.10 130 192 1.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 Pfam PF04542 Sigma-70 region 2 36 103 2.2E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 SUPERFAMILY SSF88946 12 108 2.04E-19 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 Gene3D G3DSA:1.10.1740.10 13 114 4.3E-19 T 06-07-2017 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 191 8.2E-32 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 SUPERFAMILY SSF88659 125 191 1.48E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS18435 76e76b36857bee03119ecdfeb31365f4 195 Pfam PF04545 Sigma-70, region 4 140 189 4.9E-15 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 Gene3D G3DSA:3.40.640.10 59 274 8.9E-87 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 Pfam PF00155 Aminotransferase class I and II 42 379 3.7E-65 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 SUPERFAMILY SSF53383 6 385 1.86E-106 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 Gene3D G3DSA:3.90.1150.10 275 384 1.3E-20 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 22 379 3.7E-139 T 06-07-2017 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 APT55_RS08525 af6a992d5d4645ffb9c5001d088f2b39 387 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 238 247 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 APT55_RS09565 d48c98a8e61bf2254b66c30f112844cc 180 Gene3D G3DSA:3.90.1570.10 3 175 2.5E-52 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS09565 d48c98a8e61bf2254b66c30f112844cc 180 SUPERFAMILY SSF52980 2 175 8.58E-43 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS09565 d48c98a8e61bf2254b66c30f112844cc 180 Pfam PF05685 Putative restriction endonuclease 14 172 2.7E-40 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 Gene3D G3DSA:3.40.800.10 26 335 3.2E-67 T 06-07-2017 IPR023696 Ureohydrolase domain APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 PRINTS PR00116 Arginase signature 148 163 1.1E-14 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 PRINTS PR00116 Arginase signature 262 291 1.1E-14 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 Pfam PF00491 Arginase family 29 331 1.6E-62 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 SUPERFAMILY SSF52768 124 335 7.2E-59 T 06-07-2017 APT55_RS28920 847f7c006b93295be9b0f2c2365973ee 341 SUPERFAMILY SSF52768 22 97 7.2E-59 T 06-07-2017 APT55_RS23530 203f658d8e9cab3b26ccdbd6abb07eee 156 Gene3D G3DSA:2.60.40.790 48 140 7.6E-7 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS23530 203f658d8e9cab3b26ccdbd6abb07eee 156 SUPERFAMILY SSF49764 47 139 1.88E-8 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS24525 63fea194a0023b5ef67739cb3a487f38 92 Gene3D G3DSA:3.40.1620.10 1 46 2.5E-5 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS24525 63fea194a0023b5ef67739cb3a487f38 92 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 54 7.9E-6 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS24525 63fea194a0023b5ef67739cb3a487f38 92 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 59 3.8E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT55_RS24525 63fea194a0023b5ef67739cb3a487f38 92 SUPERFAMILY SSF143120 1 61 2.62E-10 T 06-07-2017 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 3.7E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 3.7E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 50 3.7E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 3.7E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 SMART SM00418 18 99 2.9E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 Gene3D G3DSA:1.10.10.10 3 96 1.8E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 SUPERFAMILY SSF46785 10 111 2.87E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26570 aef1b4af39eef3147f09218d5f150762 118 Pfam PF01022 Bacterial regulatory protein, arsR family 26 70 2.5E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF75712 521 573 4.18E-15 T 06-07-2017 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF75712 451 486 4.18E-15 T 06-07-2017 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 Gene3D G3DSA:1.10.287.510 451 590 2.9E-24 T 06-07-2017 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 TIGRFAM TIGR00618 sbcc: exonuclease SbcC 1 1024 1.0E-145 T 06-07-2017 IPR004592 Nuclease SbcC, gammaproteobacteria type APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 Pfam PF13558 Putative exonuclease SbcCD, C subunit 927 985 5.9E-8 T 06-07-2017 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 Pfam PF13476 AAA domain 5 213 1.3E-22 T 06-07-2017 APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF52540 809 1021 6.81E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF52540 671 711 6.81E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 Gene3D G3DSA:3.40.50.300 1 145 4.3E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 Gene3D G3DSA:3.40.50.300 878 1013 4.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF52540 920 1009 1.9E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04440 041b44d327efb6c910e471d894bad01b 1027 SUPERFAMILY SSF52540 2 218 1.9E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00750 0aa29dcc2ac810611d34e3fbb24be083 364 SUPERFAMILY SSF56349 196 347 1.38E-12 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS00750 0aa29dcc2ac810611d34e3fbb24be083 364 Gene3D G3DSA:1.10.443.10 195 351 6.6E-9 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS01735 33329b559d2567c37b0bc4dcea2322fe 152 Pfam PF12049 Protein of unknown function (DUF3531) 1 138 1.7E-68 T 06-07-2017 IPR021920 Protein of unknown function DUF3531 APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 SUPERFAMILY SSF51735 5 329 3.1E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 5 330 5.1E-169 T 06-07-2017 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 Gene3D G3DSA:3.40.50.720 2 195 1.2E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 Gene3D G3DSA:3.90.25.10 197 331 1.6E-50 T 06-07-2017 APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 5 333 57.032 T 06-07-2017 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 APT55_RS20595 643daca9f8ce84968f2776933ab9677e 358 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 323 7.4E-144 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 TIGRFAM TIGR02249 integrase_gron: integron integrase 15 328 7.2E-142 T 06-07-2017 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 Pfam PF00589 Phage integrase family 115 315 4.1E-40 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 Gene3D G3DSA:1.10.443.10 115 316 3.4E-45 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 SUPERFAMILY SSF56349 16 315 2.88E-43 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 Gene3D G3DSA:1.10.150.130 26 108 7.5E-6 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal APT55_RS04830 36272363e3d449abd04e69f2ff0c4913 328 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 15 97 3.2E-27 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT55_RS11840 984d78f9dc25b86227bb4d577b9be6b6 264 SUPERFAMILY SSF53335 107 179 4.48E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11840 984d78f9dc25b86227bb4d577b9be6b6 264 SUPERFAMILY SSF53335 38 74 4.48E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11840 984d78f9dc25b86227bb4d577b9be6b6 264 Pfam PF05711 Macrocin-O-methyltransferase (TylF) 13 200 5.9E-35 T 06-07-2017 IPR008884 Macrocin-O-methyltransferase APT55_RS12585 f49b5a56411f8e96db143d369120685e 148 Gene3D G3DSA:1.10.3830.10 32 145 2.3E-42 T 06-07-2017 APT55_RS12585 f49b5a56411f8e96db143d369120685e 148 Pfam PF01219 Prokaryotic diacylglycerol kinase 38 140 4.0E-34 T 06-07-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 APT55_RS12585 f49b5a56411f8e96db143d369120685e 148 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 92 103 - T 06-07-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 Pfam PF00400 WD domain, G-beta repeat 614 645 1.4E-5 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 419 459 140.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 602 646 1.5E-7 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 511 548 110.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 464 504 0.41 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 550 595 4.1 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SMART SM00320 371 410 1.9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 Gene3D G3DSA:2.130.10.10 543 698 9.2E-19 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 Gene3D G3DSA:2.130.10.10 378 542 7.1E-19 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS09505 0a0c0342dd898b91ce42d86e25ffe7ef 712 SUPERFAMILY SSF50978 376 699 5.04E-37 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 SUPERFAMILY SSF53335 255 371 1.17E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 SUPERFAMILY SSF53335 141 217 1.17E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 Pfam PF02926 THUMP domain 33 153 6.9E-13 T 06-07-2017 IPR004114 THUMP domain GO:0003723 APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 Gene3D G3DSA:3.40.50.150 146 214 7.5E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 Gene3D G3DSA:3.40.50.150 252 370 7.5E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 Pfam PF01170 Putative RNA methylase family UPF0020 162 368 6.4E-53 T 06-07-2017 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 300 306 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 SMART SM00981 56 154 2.8E-19 T 06-07-2017 IPR004114 THUMP domain GO:0003723 APT55_RS23195 24ca7edcf7e73efecd379fc3f3550c8d 374 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 06-07-2017 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 APT55_RS14770 f4074d35af20e2472e940de3db44b2e3 204 Pfam PF11860 Protein of unknown function (DUF3380) 34 200 2.0E-62 T 06-07-2017 IPR024408 Domain of unknown function DUF3380 APT55_RS16555 4f9822c5479a3fbf1434c183f5cddb88 711 SUPERFAMILY SSF50249 36 117 2.45E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS16555 4f9822c5479a3fbf1434c183f5cddb88 711 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 409 6.9E-146 T 06-07-2017 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 APT55_RS16555 4f9822c5479a3fbf1434c183f5cddb88 711 SMART SM00316 33 111 2.0E-7 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS16555 4f9822c5479a3fbf1434c183f5cddb88 711 Gene3D G3DSA:2.40.50.140 32 117 7.7E-24 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS16555 4f9822c5479a3fbf1434c183f5cddb88 711 Pfam PF10150 Ribonuclease E/G family 113 384 2.0E-93 T 06-07-2017 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 TIGRFAM TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit 19 370 1.1E-121 T 06-07-2017 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 PIRSF PIRSF004762 1 374 1.9E-109 T 06-07-2017 IPR005244 FO synthase, subunit 2-like GO:0016765|GO:0051188|GO:0051539 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 Pfam PF04055 Radical SAM superfamily 59 235 4.2E-12 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 Gene3D G3DSA:3.20.20.70 14 364 1.3E-68 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 SUPERFAMILY SSF102114 13 337 4.05E-46 T 06-07-2017 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 Hamap MF_01612 FO synthase subunit 2 [cofH]. 2 373 50.647 T 06-07-2017 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS17035 8df2d8679955aa124fc2df3a06e2c775 375 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 51 372 7.1E-124 T 06-07-2017 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Gene3D G3DSA:3.40.50.300 226 260 5.9E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Gene3D G3DSA:3.40.50.300 336 430 5.9E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 SUPERFAMILY SSF52540 328 530 5.32E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Gene3D G3DSA:3.40.50.10140 7 132 4.5E-15 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Gene3D G3DSA:3.40.50.10140 650 774 2.3E-8 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Pfam PF13676 TIR domain 8 118 1.5E-20 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 Pfam PF13676 TIR domain 650 761 2.1E-18 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 SUPERFAMILY SSF52200 3 148 3.27E-24 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 SMART SM00255 5 153 2.0E-4 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 SMART SM00255 647 775 0.0046 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS14855 65e3e39bdf1106a53709f90788fb20f7 794 SUPERFAMILY SSF52200 645 785 3.4E-17 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS21020 661b6476d8c895776d09e4be53246459 222 Gene3D G3DSA:3.40.50.720 9 203 1.1E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS21020 661b6476d8c895776d09e4be53246459 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS21020 661b6476d8c895776d09e4be53246459 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 164 6.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS21020 661b6476d8c895776d09e4be53246459 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 6.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS21020 661b6476d8c895776d09e4be53246459 222 SUPERFAMILY SSF51735 9 203 1.57E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS21020 661b6476d8c895776d09e4be53246459 222 Pfam PF13460 NAD(P)H-binding 15 193 6.1E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS25500 26be55e995386635908244214ec8b649 360 Pfam PF04616 Glycosyl hydrolases family 43 40 319 6.0E-13 T 06-07-2017 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 APT55_RS25500 26be55e995386635908244214ec8b649 360 Gene3D G3DSA:2.115.10.20 39 326 7.6E-31 T 06-07-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain APT55_RS25500 26be55e995386635908244214ec8b649 360 SUPERFAMILY SSF75005 38 338 3.93E-37 T 06-07-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 SUPERFAMILY SSF51905 456 518 2.87E-63 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 SUPERFAMILY SSF51905 5 306 2.87E-63 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 Pfam PF00732 GMC oxidoreductase 7 306 1.7E-19 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 Gene3D G3DSA:3.50.50.60 4 129 7.7E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 Gene3D G3DSA:3.50.50.60 201 308 7.7E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 Gene3D G3DSA:3.50.50.60 418 518 7.7E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS28140 baf9e10330afc750e6e711bce037c7dd 520 Pfam PF05199 GMC oxidoreductase 452 510 1.1E-19 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT55_RS23920 cb18aed3866812fba74eb1d70f9127bd 154 Pfam PF13391 HNH endonuclease 101 154 3.5E-10 T 06-07-2017 IPR003615 HNH nuclease APT55_RS25760 e05cdc0ece607c7dcbc81aefa6651c1b 74 Pfam PF10929 Protein of unknown function (DUF2811) 6 67 1.4E-24 T 06-07-2017 IPR021231 Protein of unknown function DUF2811 APT55_RS26280 b8f1a3e931a3b11c7380afda64661f1a 428 Pfam PF01098 Cell cycle protein 202 424 2.4E-59 T 06-07-2017 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 APT55_RS26280 b8f1a3e931a3b11c7380afda64661f1a 428 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 24 423 4.4E-111 T 06-07-2017 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 APT55_RS01405 67817d2cf8b12cc61cef5fb47872ab78 143 SUPERFAMILY SSF54909 1 118 1.14E-37 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS01405 67817d2cf8b12cc61cef5fb47872ab78 143 Pfam PF03795 YCII-related domain 1 114 2.7E-24 T 06-07-2017 IPR005545 YCII-related APT55_RS01405 67817d2cf8b12cc61cef5fb47872ab78 143 Gene3D G3DSA:3.30.70.1060 1 117 2.3E-40 T 06-07-2017 APT55_RS13445 2b6972532229f2188efbacc061304bf1 271 Gene3D G3DSA:1.25.10.10 4 207 7.0E-19 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS13445 2b6972532229f2188efbacc061304bf1 271 Pfam PF13646 HEAT repeats 68 165 1.0E-10 T 06-07-2017 APT55_RS13445 2b6972532229f2188efbacc061304bf1 271 SUPERFAMILY SSF48371 18 210 6.2E-20 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 Gene3D G3DSA:3.40.50.620 2 173 3.7E-65 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 Gene3D G3DSA:2.40.30.30 174 303 3.6E-42 T 06-07-2017 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 SUPERFAMILY SSF82114 168 302 9.37E-45 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 Pfam PF01687 Riboflavin kinase 178 301 8.1E-41 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 SUPERFAMILY SSF52374 13 169 5.63E-31 T 06-07-2017 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 16 301 4.3E-94 T 06-07-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 Pfam PF06574 FAD synthetase 12 160 8.4E-45 T 06-07-2017 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 SMART SM00904 177 302 4.2E-62 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT55_RS21800 748d1796e5216ce3d0fedc943f8ff412 305 PIRSF PIRSF004491 2 305 8.1E-104 T 06-07-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT55_RS01775 3ab83b123228ccdef393fcdb5a4af9b0 37 Pfam PF06298 Photosystem II protein Y (PsbY) 1 35 2.0E-16 T 06-07-2017 IPR009388 Photosystem II PsbY GO:0009523|GO:0015979|GO:0016021|GO:0030145 APT55_RS01775 3ab83b123228ccdef393fcdb5a4af9b0 37 Hamap MF_00717 Photosystem II protein Y [psbY]. 2 36 12.22 T 06-07-2017 IPR009388 Photosystem II PsbY GO:0009523|GO:0015979|GO:0016021|GO:0030145 APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 SUPERFAMILY SSF51126 30 353 1.48E-39 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 Gene3D G3DSA:2.160.20.10 37 346 7.0E-36 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 SUPERFAMILY SSF51126 552 582 5.34E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 SUPERFAMILY SSF51126 439 520 5.34E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 Pfam PF05860 haemagglutination activity domain 32 146 3.7E-33 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 SMART SM00912 35 147 2.5E-23 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS19585 925bf778961dd0e0c972d641f8934f88 830 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 65 143 2.2E-25 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS07500 29bcd43b37eb818a3502b8d8e4d727ba 195 Gene3D G3DSA:3.90.1570.10 3 191 2.0E-24 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS07500 29bcd43b37eb818a3502b8d8e4d727ba 195 SUPERFAMILY SSF52980 3 188 6.97E-24 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS07500 29bcd43b37eb818a3502b8d8e4d727ba 195 Pfam PF05685 Putative restriction endonuclease 11 188 9.1E-33 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS07055 b963f63d9f92f69cbf77e00b6fcb2fc1 225 SUPERFAMILY SSF52833 3 217 6.22E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS07055 b963f63d9f92f69cbf77e00b6fcb2fc1 225 Pfam PF01323 DSBA-like thioredoxin domain 6 208 2.9E-13 T 06-07-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 APT55_RS07055 b963f63d9f92f69cbf77e00b6fcb2fc1 225 Gene3D G3DSA:3.40.30.10 1 213 4.6E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02960 1cb4e8f452d8d30c9ee9c582f6620906 154 Pfam PF02082 Transcriptional regulator 12 94 9.5E-24 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS02960 1cb4e8f452d8d30c9ee9c582f6620906 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 13 139 7.7E-31 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type APT55_RS02960 1cb4e8f452d8d30c9ee9c582f6620906 154 Gene3D G3DSA:1.10.10.10 12 146 6.8E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02960 1cb4e8f452d8d30c9ee9c582f6620906 154 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 61 79 - T 06-07-2017 IPR030489 Transcription regulator Rrf2-type, conserved site APT55_RS02960 1cb4e8f452d8d30c9ee9c582f6620906 154 SUPERFAMILY SSF46785 13 143 2.57E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 SMART SM00220 12 274 2.8E-41 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 43 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 SUPERFAMILY SSF56112 6 300 2.29E-57 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 138 150 - T 06-07-2017 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 Gene3D G3DSA:1.10.510.10 87 267 1.1E-35 T 06-07-2017 APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 Gene3D G3DSA:3.30.200.20 7 86 3.4E-16 T 06-07-2017 APT55_RS29200 5438ec3fa33309518ac8de8f212f50a2 548 Pfam PF00069 Protein kinase domain 12 229 3.2E-36 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS25190 6e5dd3064def3e68ced533868d54ff98 441 Pfam PF14516 AAA-like domain 105 435 1.2E-142 T 06-07-2017 APT55_RS25190 6e5dd3064def3e68ced533868d54ff98 441 Gene3D G3DSA:3.40.50.300 144 284 5.0E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25190 6e5dd3064def3e68ced533868d54ff98 441 SUPERFAMILY SSF52540 131 349 5.78E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS05575 5317e9c1d497eb734f2e0a4b24f6de72 215 Gene3D G3DSA:3.40.50.150 19 157 2.5E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05575 5317e9c1d497eb734f2e0a4b24f6de72 215 SUPERFAMILY SSF53335 19 160 1.53E-16 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05575 5317e9c1d497eb734f2e0a4b24f6de72 215 Pfam PF08241 Methyltransferase domain 97 142 4.9E-12 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 Pfam PF01327 Polypeptide deformylase 20 165 2.5E-50 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 Hamap MF_00163 Peptide deformylase [def]. 15 176 29.224 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 PRINTS PR01576 Peptide deformylase signature 136 165 8.0E-36 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 PRINTS PR01576 Peptide deformylase signature 117 135 8.0E-36 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 PRINTS PR01576 Peptide deformylase signature 105 116 8.0E-36 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 PRINTS PR01576 Peptide deformylase signature 46 75 8.0E-36 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 SUPERFAMILY SSF56420 10 165 9.94E-57 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 Gene3D G3DSA:3.90.45.10 19 176 6.3E-61 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 18 167 1.6E-53 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS09580 9ce79ca21ea828d2d3f727d016f7d1d6 187 PIRSF PIRSF004749 2 182 7.2E-54 T 06-07-2017 IPR023635 Peptide deformylase APT55_RS07620 5ad274acbd22d3666234446f7e66e173 255 Pfam PF00731 AIR carboxylase 123 251 4.7E-15 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS07620 5ad274acbd22d3666234446f7e66e173 255 Gene3D G3DSA:3.40.50.7700 122 251 9.0E-22 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS07620 5ad274acbd22d3666234446f7e66e173 255 SMART SM01001 121 253 1.1E-32 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS07620 5ad274acbd22d3666234446f7e66e173 255 SUPERFAMILY SSF52255 122 251 5.1E-27 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 Pfam PF00361 Proton-conducting membrane transporter 131 424 8.0E-68 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 35 121 3.3E-5 T 06-07-2017 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 2 488 9.4E-162 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 6.0E-30 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 6.0E-30 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 381 407 6.0E-30 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 6.0E-30 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05760 757c9ce9ba6ea5fb010184d80cb01ca0 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 6.0E-30 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS13910 7f1251b349ade1174e2abb2042c9e1da 66 Gene3D G3DSA:3.30.70.100 4 63 8.4E-9 T 06-07-2017 APT55_RS13910 7f1251b349ade1174e2abb2042c9e1da 66 SUPERFAMILY SSF55008 3 63 2.88E-8 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS13910 7f1251b349ade1174e2abb2042c9e1da 66 Pfam PF00403 Heavy-metal-associated domain 6 61 2.5E-8 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 SUPERFAMILY SSF56601 326 664 2.01E-125 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 SUPERFAMILY SSF56601 274 296 2.01E-125 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 Gene3D G3DSA:1.10.3810.10 118 294 1.1E-67 T 06-07-2017 APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 Pfam PF00905 Penicillin binding protein transpeptidase domain 385 617 5.7E-35 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 SUPERFAMILY SSF53955 106 319 2.02E-70 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 Pfam PF00912 Transglycosylase 117 292 8.3E-61 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 Gene3D G3DSA:3.40.710.10 295 690 1.4E-126 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS16750 228b2cf8d3b42117c25a5c3368d39d6f 766 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 128 650 1.6E-191 T 06-07-2017 APT55_RS02225 092b743cd3e1273d29d47db03b4f9e69 310 Pfam PF13646 HEAT repeats 73 152 2.2E-7 T 06-07-2017 APT55_RS02225 092b743cd3e1273d29d47db03b4f9e69 310 Gene3D G3DSA:1.25.10.10 74 156 1.0E-7 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS02225 092b743cd3e1273d29d47db03b4f9e69 310 SUPERFAMILY SSF48371 72 154 2.3E-8 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS02100 6bdb534c9d2d01f9d928d07fb458e3ef 174 Pfam PF07176 Alpha/beta hydrolase of unknown function (DUF1400) 23 147 3.1E-42 T 06-07-2017 IPR010802 Domain of unknown function DUF1400 APT55_RS05875 8b3ab4a19148e96d1c216ca2a41411a9 306 Pfam PF02628 Cytochrome oxidase assembly protein 23 287 1.7E-31 T 06-07-2017 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 APT55_RS20250 e8754112a12a0bc6427bb27766479b04 93 Gene3D G3DSA:3.40.30.10 3 88 4.0E-23 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS20250 e8754112a12a0bc6427bb27766479b04 93 SUPERFAMILY SSF52833 3 89 6.93E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS20250 e8754112a12a0bc6427bb27766479b04 93 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 3 72 1.7E-6 T 06-07-2017 APT55_RS21045 6a387e1c2c66fa4499190736105379e9 522 SUPERFAMILY SSF111352 78 478 1.7E-112 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 APT55_RS21045 6a387e1c2c66fa4499190736105379e9 522 TIGRFAM TIGR00836 amt: ammonium transporter 79 497 6.0E-125 T 06-07-2017 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 APT55_RS21045 6a387e1c2c66fa4499190736105379e9 522 Gene3D G3DSA:1.10.3430.10 77 478 6.8E-122 T 06-07-2017 IPR029020 Ammonium/urea transporter APT55_RS21045 6a387e1c2c66fa4499190736105379e9 522 ProSitePatterns PS01219 Ammonium transporters signature. 242 267 - T 06-07-2017 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 APT55_RS21045 6a387e1c2c66fa4499190736105379e9 522 Pfam PF00909 Ammonium Transporter Family 81 497 1.0E-119 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 APT55_RS12740 08b67ba76a2e36ebd98a8bed14f82666 227 Pfam PF02397 Bacterial sugar transferase 35 221 1.7E-56 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 SUPERFAMILY SSF51905 1 336 6.15E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 SUPERFAMILY SSF51905 457 491 6.15E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 TIGRFAM TIGR02733 desat_CrtD: C-3',4' desaturase CrtD 3 493 2.3E-238 T 06-07-2017 IPR014104 Myxoxanthophyll biosynthesis, C-3',4' desaturase CrtD APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 Pfam PF01593 Flavin containing amine oxidoreductase 12 491 7.7E-17 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 Gene3D G3DSA:3.50.50.60 223 346 1.7E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 Gene3D G3DSA:3.50.50.60 163 164 1.7E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS11315 71d38e1f76aa09aaa38402c710dd817d 499 Gene3D G3DSA:3.50.50.60 5 84 1.7E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 Gene3D G3DSA:3.40.50.300 125 230 2.3E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 SUPERFAMILY SSF52540 98 374 1.69E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 PRINTS PR00364 Disease resistance protein signature 211 225 2.8E-10 T 06-07-2017 APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 PRINTS PR00364 Disease resistance protein signature 138 153 2.8E-10 T 06-07-2017 APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 PRINTS PR00364 Disease resistance protein signature 317 331 2.8E-10 T 06-07-2017 APT55_RS14920 e3158eeee1e8e5953a0f4234bd660572 477 Pfam PF00931 NB-ARC domain 132 331 5.3E-12 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 Pfam PF01966 HD domain 366 487 9.5E-14 T 06-07-2017 IPR006674 HD domain APT55_RS23025 f47125284c129df12fd36f966e5776da 547 SUPERFAMILY SSF109604 349 543 1.81E-48 T 06-07-2017 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 Gene3D G3DSA:1.10.3210.10 355 485 7.4E-9 T 06-07-2017 IPR006674 HD domain APT55_RS23025 f47125284c129df12fd36f966e5776da 547 SUPERFAMILY SSF53067 26 149 3.72E-37 T 06-07-2017 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 PIRSF PIRSF001267 17 542 2.0E-155 T 06-07-2017 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 Pfam PF02541 Ppx/GppA phosphatase family 39 334 6.2E-82 T 06-07-2017 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 Gene3D G3DSA:3.30.420.40 21 147 5.1E-44 T 06-07-2017 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 SUPERFAMILY SSF53067 153 333 1.2E-42 T 06-07-2017 APT55_RS23025 f47125284c129df12fd36f966e5776da 547 Gene3D G3DSA:3.30.420.150 149 335 4.0E-54 T 06-07-2017 APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 ProSitePatterns PS00380 Rhodanese signature 1. 37 48 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 Gene3D G3DSA:3.40.250.10 4 107 3.8E-32 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 SUPERFAMILY SSF52821 9 159 4.98E-38 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 Pfam PF00581 Rhodanese-like domain 14 104 1.1E-17 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 Pfam PF11127 Protein of unknown function (DUF2892) 120 172 8.9E-9 T 06-07-2017 IPR021309 Protein of unknown function DUF2892 APT55_RS14290 7bae77c59874f47f2e87fb2c57cefbb1 183 SMART SM00450 12 107 2.9E-28 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS10680 3c1edeba1aae53ad53ea8361a34c53da 360 Gene3D G3DSA:3.30.1950.10 46 112 4.2E-15 T 06-07-2017 APT55_RS10680 3c1edeba1aae53ad53ea8361a34c53da 360 Gene3D G3DSA:3.10.560.10 113 223 2.6E-23 T 06-07-2017 APT55_RS10680 3c1edeba1aae53ad53ea8361a34c53da 360 Gene3D G3DSA:3.10.560.10 241 329 8.0E-12 T 06-07-2017 APT55_RS10680 3c1edeba1aae53ad53ea8361a34c53da 360 Pfam PF10531 SLBB domain 247 299 1.2E-8 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS10680 3c1edeba1aae53ad53ea8361a34c53da 360 Pfam PF02563 Polysaccharide biosynthesis/export protein 40 113 1.0E-17 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT55_RS25915 4395607a3252fef971bc201aa1543145 129 Pfam PF10025 Uncharacterized conserved protein (DUF2267) 3 122 1.6E-31 T 06-07-2017 IPR018727 Protein of unknown function DUF2267 APT55_RS30780 98526dd7efbcab41a2629bc4cda0d9f0 343 Gene3D G3DSA:1.10.3470.10 15 341 2.6E-106 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS30780 98526dd7efbcab41a2629bc4cda0d9f0 343 SUPERFAMILY SSF81345 10 337 1.57E-84 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS30780 98526dd7efbcab41a2629bc4cda0d9f0 343 Pfam PF01032 FecCD transport family 30 337 5.2E-97 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS08505 d17e8998dc0d23c46f254b6483e54989 281 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 213 280 1.5E-4 T 06-07-2017 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type APT55_RS08505 d17e8998dc0d23c46f254b6483e54989 281 Pfam PF12146 Serine aminopeptidase, S33 82 191 2.7E-13 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 APT55_RS08505 d17e8998dc0d23c46f254b6483e54989 281 SUPERFAMILY SSF53474 14 279 7.98E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS08505 d17e8998dc0d23c46f254b6483e54989 281 Gene3D G3DSA:3.40.50.1820 52 279 1.3E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23520 60abceafb9c995a72d5fbb7bf761c2ec 135 Gene3D G3DSA:3.40.50.2300 2 123 1.1E-29 T 06-07-2017 APT55_RS23520 60abceafb9c995a72d5fbb7bf761c2ec 135 SUPERFAMILY SSF52172 2 124 2.13E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS23520 60abceafb9c995a72d5fbb7bf761c2ec 135 SMART SM00448 4 118 5.8E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS23520 60abceafb9c995a72d5fbb7bf761c2ec 135 Pfam PF00072 Response regulator receiver domain 6 117 3.6E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS18580 346b2a96fe8ce12c1a653f0ae1f9a1da 446 SUPERFAMILY SSF111283 4 446 1.96E-98 T 06-07-2017 APT55_RS18580 346b2a96fe8ce12c1a653f0ae1f9a1da 446 Pfam PF01523 Putative modulator of DNA gyrase 24 314 4.7E-47 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS01785 068a1f055bd341a1dd0c017ca383a0d3 245 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 17 199 1.1E-52 T 06-07-2017 IPR022493 Integral membrane YkoY APT55_RS01785 068a1f055bd341a1dd0c017ca383a0d3 245 Pfam PF03741 Integral membrane protein TerC family 20 191 5.9E-40 T 06-07-2017 IPR005496 Integral membrane protein TerC GO:0016021 APT55_RS12715 6a0857ed75e2480654bff4a8ff429b8b 448 Gene3D G3DSA:3.50.50.60 9 105 6.1E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12715 6a0857ed75e2480654bff4a8ff429b8b 448 Gene3D G3DSA:3.50.50.60 194 297 6.1E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12715 6a0857ed75e2480654bff4a8ff429b8b 448 SUPERFAMILY SSF51905 400 417 1.6E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12715 6a0857ed75e2480654bff4a8ff429b8b 448 SUPERFAMILY SSF51905 9 297 1.6E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12715 6a0857ed75e2480654bff4a8ff429b8b 448 Pfam PF01593 Flavin containing amine oxidoreductase 17 417 2.4E-27 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS16240 2f4fff00d055b13ccd32fbc107d84302 295 Pfam PF05685 Putative restriction endonuclease 20 220 3.1E-22 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS15390 a1095d6f82e2b0d35ba5c383873ab35e 215 Pfam PF08547 Complex I intermediate-associated protein 30 (CIA30) 44 209 6.0E-44 T 06-07-2017 IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 Reactome: R-HSA-6799198 APT55_RS15390 a1095d6f82e2b0d35ba5c383873ab35e 215 SUPERFAMILY SSF49785 41 208 1.19E-28 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS08960 6b5f3c267a47511cf621863f07b5b598 163 Pfam PF06799 Protein of unknown function (DUF1230) 6 147 2.2E-62 T 06-07-2017 IPR009631 Uncharacterised protein family Ycf36 APT55_RS08960 6b5f3c267a47511cf621863f07b5b598 163 ProDom PD016444 YCF36 PLASTID CHLOROPLAST EXPRESSED UNCHARACTERIZED MEMBRANE CYANELLE F14F18_10 K8K14.9 OSJNBA0052K01.20 5 160 3.0E-39 T 06-07-2017 IPR009631 Uncharacterised protein family Ycf36 APT55_RS01875 a70ca0896c6cdc7c332a58c5d7556ef5 123 Pfam PF12680 SnoaL-like domain 13 58 4.1E-6 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain APT55_RS01875 a70ca0896c6cdc7c332a58c5d7556ef5 123 SUPERFAMILY SSF54427 3 119 1.52E-20 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS01875 a70ca0896c6cdc7c332a58c5d7556ef5 123 Gene3D G3DSA:3.10.450.50 2 122 2.5E-36 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS23840 b648a227c54014349ce3aa88a884f416 182 Pfam PF09988 Uncharacterized metal-binding protein (DUF2227) 2 176 5.9E-62 T 06-07-2017 IPR019250 Protein of unknown function DUF2227, metal-binding APT55_RS04625 bb35a203cf86c89c4a59b2aaa4f53146 453 SUPERFAMILY SSF53850 24 214 4.6E-73 T 06-07-2017 APT55_RS04625 bb35a203cf86c89c4a59b2aaa4f53146 453 SUPERFAMILY SSF53850 255 448 4.6E-73 T 06-07-2017 APT55_RS04625 bb35a203cf86c89c4a59b2aaa4f53146 453 Gene3D G3DSA:3.40.190.10 251 377 6.0E-29 T 06-07-2017 APT55_RS04625 bb35a203cf86c89c4a59b2aaa4f53146 453 Gene3D G3DSA:3.40.190.10 20 208 4.3E-37 T 06-07-2017 APT55_RS04625 bb35a203cf86c89c4a59b2aaa4f53146 453 Pfam PF13416 Bacterial extracellular solute-binding protein 41 388 3.5E-40 T 06-07-2017 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 SUPERFAMILY SSF52540 3 255 2.13E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 SUPERFAMILY SSF52540 290 532 5.09E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Gene3D G3DSA:3.40.50.300 276 534 2.8E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Gene3D G3DSA:3.40.50.300 4 253 3.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Pfam PF00005 ABC transporter 24 179 1.5E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Pfam PF00005 ABC transporter 308 460 8.9E-37 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 ProSitePatterns PS00211 ABC transporters family signature. 433 447 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 SMART SM00382 316 519 4.7E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 SMART SM00382 32 229 3.2E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 268 8.1E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT55_RS22960 57f75690216585a5ea0f9e05badfa558 544 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 512 541 5.7E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT55_RS21180 0fa6f25003745215550344433a00fd45 170 Pfam PF14106 Domain of unknown function (DUF4279) 13 125 5.0E-22 T 06-07-2017 IPR025459 Protein of unknown function DUF4279 APT55_RS05690 c4c298e6851ee406a8962adfee042730 156 Pfam PF06485 Protein of unknown function (DUF1092) 3 152 1.9E-50 T 06-07-2017 IPR009472 Protein of unknown function DUF1092 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 Pfam PF00561 alpha/beta hydrolase fold 12 241 8.0E-25 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 Gene3D G3DSA:3.40.50.1820 9 252 1.3E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 79 92 1.5E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.5E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 36 51 1.5E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 5 253 34.396 T 06-07-2017 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00412 Epoxide hydrolase signature 229 251 3.0E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00412 Epoxide hydrolase signature 93 106 3.0E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00412 Epoxide hydrolase signature 79 92 3.0E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 PRINTS PR00412 Epoxide hydrolase signature 36 51 3.0E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 11 252 4.6E-84 T 06-07-2017 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 APT55_RS23950 33c9a1859f9a2d547253a2912e1cde86 259 SUPERFAMILY SSF53474 10 252 1.45E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20285 68c91c6ee9d9fdaa482927e8e5a5db94 168 Pfam PF07681 DoxX 41 114 5.2E-8 T 06-07-2017 IPR032808 DoxX family APT55_RS14220 32cb79023cabab7dfc36f9f2367a045e 346 Pfam PF01594 Domain of unknown function DUF20 21 337 4.3E-59 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS10930 c07c4e9de56f4210ea6750af884aaec6 431 SUPERFAMILY SSF111283 2 427 9.42E-94 T 06-07-2017 APT55_RS10930 c07c4e9de56f4210ea6750af884aaec6 431 Pfam PF01523 Putative modulator of DNA gyrase 22 295 6.8E-44 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS12845 db0fd29f9c6545fcee3557b2c5daee81 79 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 52 77 2.5E-5 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS12845 db0fd29f9c6545fcee3557b2c5daee81 79 TIGRFAM TIGR04155 cyano_PEP: PEP-CTERM protein sorting domain, cyanobacterial subclass 52 78 1.9E-12 T 06-07-2017 IPR026374 PEP-CTERM protein sorting domain, cyanobacterial subclass APT55_RS24035 b61c242754c11425f2a5b7b397b071ce 211 TIGRFAM TIGR02702 SufR_cyano: iron-sulfur cluster biosynthesis transcriptional regulator SufR 8 207 3.2E-97 T 06-07-2017 IPR014075 SUF system FeS cluster assembly, SufR regulator, cyanobacteria APT55_RS24035 b61c242754c11425f2a5b7b397b071ce 211 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 52 5.7E-11 T 06-07-2017 APT55_RS24035 b61c242754c11425f2a5b7b397b071ce 211 Gene3D G3DSA:1.10.10.10 10 106 1.3E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS24035 b61c242754c11425f2a5b7b397b071ce 211 SUPERFAMILY SSF46785 9 189 4.81E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10505 e3580e929095ef5ab69a96a1ddc2ea9c 709 Gene3D G3DSA:3.40.50.300 520 705 3.0E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10505 e3580e929095ef5ab69a96a1ddc2ea9c 709 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 521 706 3.2E-15 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS10505 e3580e929095ef5ab69a96a1ddc2ea9c 709 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 499 703 2.6E-33 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 APT55_RS10505 e3580e929095ef5ab69a96a1ddc2ea9c 709 Pfam PF02706 Chain length determinant protein 37 170 3.1E-12 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS10505 e3580e929095ef5ab69a96a1ddc2ea9c 709 SUPERFAMILY SSF52540 518 705 1.54E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07245 2cbc54fb2fd7f9df09b7e753ccc2025c 248 SMART SM00382 26 217 1.8E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS07245 2cbc54fb2fd7f9df09b7e753ccc2025c 248 Gene3D G3DSA:3.40.50.300 1 230 2.1E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07245 2cbc54fb2fd7f9df09b7e753ccc2025c 248 Pfam PF00005 ABC transporter 17 162 2.3E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS07245 2cbc54fb2fd7f9df09b7e753ccc2025c 248 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS07245 2cbc54fb2fd7f9df09b7e753ccc2025c 248 SUPERFAMILY SSF52540 2 228 4.64E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29795 a0784c72fee8d42aa0a36fa7f6c79c7e 266 SUPERFAMILY SSF52980 30 159 5.36E-11 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS29795 a0784c72fee8d42aa0a36fa7f6c79c7e 266 Pfam PF05685 Putative restriction endonuclease 25 179 3.3E-21 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS29795 a0784c72fee8d42aa0a36fa7f6c79c7e 266 Gene3D G3DSA:3.90.1570.10 76 149 1.4E-6 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS19940 1a414c7f7a11fb01fe15140e7b5bcdfa 140 Pfam PF01289 Thiol-activated cytolysin 48 133 2.1E-4 T 06-07-2017 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 APT55_RS19940 1a414c7f7a11fb01fe15140e7b5bcdfa 140 SUPERFAMILY SSF56978 45 138 1.44E-8 T 06-07-2017 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 APT55_RS19940 1a414c7f7a11fb01fe15140e7b5bcdfa 140 Gene3D G3DSA:2.60.40.1430 47 138 1.3E-4 T 06-07-2017 APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 219 235 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 SUPERFAMILY SSF52283 2 134 1.89E-34 T 06-07-2017 APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 Gene3D G3DSA:3.40.50.720 139 301 1.5E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 SUPERFAMILY SSF51735 102 294 9.03E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 293 5.1E-52 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 190 212 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 Gene3D G3DSA:3.40.50.720 1 138 5.5E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07845 2a9c89f1d10947c3cbed2a2d830a4185 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 324 2.3E-24 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 APT55_RS17680 e745c2743e35f78a464fced2adb569a5 513 SMART SM00382 283 418 4.8E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17680 e745c2743e35f78a464fced2adb569a5 513 SUPERFAMILY SSF52540 266 478 4.69E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17680 e745c2743e35f78a464fced2adb569a5 513 Gene3D G3DSA:1.10.8.60 424 469 3.5E-8 T 06-07-2017 APT55_RS17680 e745c2743e35f78a464fced2adb569a5 513 Gene3D G3DSA:3.40.50.300 274 423 1.4E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17680 e745c2743e35f78a464fced2adb569a5 513 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 287 415 1.3E-28 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS03455 70b00a7af8da76573b3323718fb4abd3 160 Pfam PF03073 TspO/MBR family 10 149 1.7E-16 T 06-07-2017 IPR004307 TspO/MBR-related protein GO:0016021 APT55_RS03455 70b00a7af8da76573b3323718fb4abd3 160 PIRSF PIRSF005859 1 157 3.7E-25 T 06-07-2017 IPR004307 TspO/MBR-related protein GO:0016021 APT55_RS04050 12fca8bd7c61bc24ece0d4e524776c7b 299 SUPERFAMILY SSF103481 47 145 2.09E-13 T 06-07-2017 APT55_RS04050 12fca8bd7c61bc24ece0d4e524776c7b 299 SUPERFAMILY SSF103481 193 297 1.14E-8 T 06-07-2017 APT55_RS04050 12fca8bd7c61bc24ece0d4e524776c7b 299 Pfam PF00892 EamA-like transporter family 157 296 2.2E-16 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS04050 12fca8bd7c61bc24ece0d4e524776c7b 299 Pfam PF00892 EamA-like transporter family 8 142 4.9E-21 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS05085 d7f87248c2aa21c43af841e313f94c17 110 Pfam PF08869 XisI protein 1 109 9.6E-44 T 06-07-2017 IPR014968 XisI protein APT55_RS05085 d7f87248c2aa21c43af841e313f94c17 110 Gene3D G3DSA:3.30.310.110 1 110 7.1E-44 T 06-07-2017 IPR014968 XisI protein APT55_RS05085 d7f87248c2aa21c43af841e313f94c17 110 SUPERFAMILY SSF143847 1 110 3.14E-40 T 06-07-2017 IPR014968 XisI protein APT55_RS07225 d9b6e8d3e338512a2ba04db5117097f3 343 PIRSF PIRSF026396 1 341 3.7E-204 T 06-07-2017 IPR016836 Long-chain fatty acyl-ACP reductase, aldehyde-forming MetaCyc: PWY-6622|MetaCyc: PWY-7032 APT55_RS07225 d9b6e8d3e338512a2ba04db5117097f3 343 SUPERFAMILY SSF51735 128 324 1.45E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07225 d9b6e8d3e338512a2ba04db5117097f3 343 TIGRFAM TIGR04058 AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming) 1 338 1.9E-200 T 06-07-2017 IPR016836 Long-chain fatty acyl-ACP reductase, aldehyde-forming MetaCyc: PWY-6622|MetaCyc: PWY-7032 APT55_RS07225 d9b6e8d3e338512a2ba04db5117097f3 343 Gene3D G3DSA:3.40.50.720 145 250 3.8E-14 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS07225 d9b6e8d3e338512a2ba04db5117097f3 343 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 144 257 2.0E-6 T 06-07-2017 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APT55_RS15530 be6d8390283b20567eaf1900a0104670 275 SMART SM00563 104 225 7.0E-24 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS15530 be6d8390283b20567eaf1900a0104670 275 Pfam PF01553 Acyltransferase 89 222 1.9E-19 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS15530 be6d8390283b20567eaf1900a0104670 275 SUPERFAMILY SSF69593 68 247 1.57E-22 T 06-07-2017 APT55_RS15530 be6d8390283b20567eaf1900a0104670 275 Gene3D G3DSA:3.40.1130.10 78 230 6.5E-10 T 06-07-2017 APT55_RS21845 69d39754457a4c8bbfddec67fc57e27b 157 SUPERFAMILY SSF46458 12 154 8.14E-23 T 06-07-2017 IPR009050 Globin-like APT55_RS21845 69d39754457a4c8bbfddec67fc57e27b 157 Pfam PF00502 Phycobilisome protein 12 148 3.0E-18 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS21845 69d39754457a4c8bbfddec67fc57e27b 157 Gene3D G3DSA:1.10.490.20 2 141 3.4E-17 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS27260 fdf72fa8949e346acf1a5d8e65db0cc2 323 Pfam PF03547 Membrane transport protein 197 319 2.5E-9 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 Gene3D G3DSA:3.40.50.300 5 253 8.5E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 SUPERFAMILY SSF52540 50 253 3.03E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 SMART SM00382 66 238 7.8E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 Pfam PF00005 ABC transporter 57 188 4.0E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 Gene3D G3DSA:2.70.50.60 262 369 3.6E-8 T 06-07-2017 APT55_RS27750 565e987eaadf4f124ed1c3efdf38066a 416 Pfam PF14524 Wzt C-terminal domain 267 386 4.7E-13 T 06-07-2017 IPR029439 Wzt, C-terminal APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 596 629 1.6E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 562 595 4.7E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 528 561 2.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 460 493 2.6E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 494 527 0.0028 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SMART SM00028 430 459 6.7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Pfam PF13181 Tetratricopeptide repeat 495 527 0.0043 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Pfam PF13181 Tetratricopeptide repeat 563 594 0.18 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Gene3D G3DSA:1.25.40.10 532 632 2.2E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Gene3D G3DSA:1.25.40.10 431 531 7.3E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Pfam PF13432 Tetratricopeptide repeat 430 493 3.6E-10 T 06-07-2017 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 SUPERFAMILY SSF48439 440 627 3.66E-51 T 06-07-2017 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Pfam PF00515 Tetratricopeptide repeat 530 558 6.2E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS05665 82e433092cfd27cd36e1178a3b772467 654 Pfam PF00515 Tetratricopeptide repeat 598 629 1.6E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS27500 6100f907fd79b1c1c0febc22ac98b57b 207 SUPERFAMILY SSF49879 64 206 3.06E-18 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS27500 6100f907fd79b1c1c0febc22ac98b57b 207 Gene3D G3DSA:2.60.200.20 92 206 6.5E-18 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27500 6100f907fd79b1c1c0febc22ac98b57b 207 Pfam PF00498 FHA domain 116 198 7.6E-12 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS27140 1596668b1203d4e416d7219230223e60 440 SUPERFAMILY SSF52266 110 145 2.14E-14 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27140 1596668b1203d4e416d7219230223e60 440 SUPERFAMILY SSF52266 179 224 2.14E-14 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27140 1596668b1203d4e416d7219230223e60 440 SUPERFAMILY SSF52266 306 425 2.14E-14 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27140 1596668b1203d4e416d7219230223e60 440 Gene3D G3DSA:3.40.50.1110 111 145 1.0E-17 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27140 1596668b1203d4e416d7219230223e60 440 Gene3D G3DSA:3.40.50.1110 178 228 1.0E-17 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27140 1596668b1203d4e416d7219230223e60 440 Gene3D G3DSA:3.40.50.1110 303 424 1.0E-17 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS11935 0a8535c033d5a4b9e6eb6e6a0e7c0b35 81 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 17 77 12.489 T 06-07-2017 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT55_RS11935 0a8535c033d5a4b9e6eb6e6a0e7c0b35 81 Pfam PF01192 RNA polymerase Rpb6 24 75 3.4E-7 T 06-07-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 APT55_RS11935 0a8535c033d5a4b9e6eb6e6a0e7c0b35 81 SUPERFAMILY SSF63562 22 79 1.92E-9 T 06-07-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 APT55_RS31400 8e476cab864f4af2d5263c5a2ce9aad6 542 Pfam PF12469 CRISPR-associated protein 5 56 5.1E-9 T 06-07-2017 IPR024615 CRISPR-associated protein Crm2, N-terminal APT55_RS05720 d9788dfa7d739cc4722c020b93fdf77a 99 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 83 7.0E-26 T 06-07-2017 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml APT55_RS05720 d9788dfa7d739cc4722c020b93fdf77a 99 Gene3D G3DSA:2.40.50.220 1 96 6.1E-37 T 06-07-2017 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml APT55_RS05720 d9788dfa7d739cc4722c020b93fdf77a 99 SUPERFAMILY SSF159133 1 95 3.27E-33 T 06-07-2017 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml APT55_RS05720 d9788dfa7d739cc4722c020b93fdf77a 99 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 6.8E-33 T 06-07-2017 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml APT55_RS07815 93556935bc70972450ed3922f3524b5c 228 Hamap MF_01843 Protein Thf1 [thf1]. 1 211 30.359 T 06-07-2017 IPR017499 Protein Thf1 GO:0010207|GO:0015979 APT55_RS07815 93556935bc70972450ed3922f3524b5c 228 Pfam PF11264 Thylakoid formation protein 6 213 2.4E-88 T 06-07-2017 IPR017499 Protein Thf1 GO:0010207|GO:0015979 APT55_RS07815 93556935bc70972450ed3922f3524b5c 228 TIGRFAM TIGR03060 PS_II_psb29: photosystem II biogenesis protein Psp29 2 210 9.5E-79 T 06-07-2017 IPR017499 Protein Thf1 GO:0010207|GO:0015979 APT55_RS14860 12dfa272fc2a37a36bc7993b84a732e8 255 Pfam PF09323 Domain of unknown function (DUF1980) 17 166 6.7E-7 T 06-07-2017 IPR015402 Protein of unknown function DUF1980 APT55_RS14860 12dfa272fc2a37a36bc7993b84a732e8 255 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 32 253 1.2E-64 T 06-07-2017 IPR015402 Protein of unknown function DUF1980 APT55_RS17980 ee26ce98ff948ce2953497768544e680 373 Gene3D G3DSA:2.70.160.11 139 276 2.2E-18 T 06-07-2017 APT55_RS17980 ee26ce98ff948ce2953497768544e680 373 SUPERFAMILY SSF53335 12 287 2.13E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17980 ee26ce98ff948ce2953497768544e680 373 Gene3D G3DSA:3.40.50.150 2 136 7.1E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17980 ee26ce98ff948ce2953497768544e680 373 Pfam PF05185 PRMT5 arginine-N-methyltransferase 57 285 6.1E-14 T 06-07-2017 IPR025799 Protein arginine N-methyltransferase GO:0006479|GO:0008168 APT55_RS18355 3e5a037dee4d84d31aeecb3680e21d8e 185 SUPERFAMILY SSF55144 5 181 1.36E-34 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS18355 3e5a037dee4d84d31aeecb3680e21d8e 185 Pfam PF13563 2'-5' RNA ligase superfamily 18 171 1.8E-20 T 06-07-2017 APT55_RS18355 3e5a037dee4d84d31aeecb3680e21d8e 185 Gene3D G3DSA:3.90.1140.10 7 182 4.8E-25 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase APT55_RS26655 cbc2e19cb1da528c731c2f8311dd4acf 359 SUPERFAMILY SSF88723 160 288 1.29E-23 T 06-07-2017 IPR029060 PIN domain-like APT55_RS26655 cbc2e19cb1da528c731c2f8311dd4acf 359 SMART SM00670 160 267 2.3E-12 T 06-07-2017 IPR002716 PIN domain APT55_RS26655 cbc2e19cb1da528c731c2f8311dd4acf 359 Gene3D G3DSA:3.40.50.1010 161 289 9.7E-30 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 SMART SM00138 3 259 2.3E-30 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 SUPERFAMILY SSF53335 65 251 2.24E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 Gene3D G3DSA:3.40.50.150 65 251 2.8E-49 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 PRINTS PR00996 Glutamate methyltransferase family signature 58 70 1.7E-19 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 PRINTS PR00996 Glutamate methyltransferase family signature 197 211 1.7E-19 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 PRINTS PR00996 Glutamate methyltransferase family signature 216 239 1.7E-19 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 PRINTS PR00996 Glutamate methyltransferase family signature 96 116 1.7E-19 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 PRINTS PR00996 Glutamate methyltransferase family signature 129 145 1.7E-19 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 Pfam PF01739 CheR methyltransferase, SAM binding domain 66 242 2.0E-39 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 Gene3D G3DSA:1.25.40.10 302 401 1.8E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 Pfam PF13181 Tetratricopeptide repeat 338 370 3.3E-8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 SUPERFAMILY SSF48452 302 401 2.63E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10010 657643aa8e07506058e1fe27f877825c 412 SMART SM00028 338 371 7.1E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS20355 f50b0f96592385d7572cb41cb1695362 273 SUPERFAMILY SSF161098 4 273 3.14E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20355 f50b0f96592385d7572cb41cb1695362 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 267 9.0E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20355 f50b0f96592385d7572cb41cb1695362 273 Gene3D G3DSA:1.10.3720.10 3 261 1.4E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS20225 80f3fd4ce9bfb19a76a242bb2bea2775 206 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 172 4.9E-36 T 06-07-2017 IPR023214 HAD-like domain APT55_RS20225 80f3fd4ce9bfb19a76a242bb2bea2775 206 SUPERFAMILY SSF56784 1 203 1.04E-41 T 06-07-2017 IPR023214 HAD-like domain APT55_RS20225 80f3fd4ce9bfb19a76a242bb2bea2775 206 Gene3D G3DSA:3.40.50.1000 73 202 1.1E-29 T 06-07-2017 IPR023214 HAD-like domain APT55_RS20225 80f3fd4ce9bfb19a76a242bb2bea2775 206 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 167 3.6E-6 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS02275 686a7ea349f79bbd6f0f16eb63b3c0eb 232 SUPERFAMILY SSF52266 25 53 4.79E-37 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS02275 686a7ea349f79bbd6f0f16eb63b3c0eb 232 SUPERFAMILY SSF52266 81 224 4.79E-37 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS02275 686a7ea349f79bbd6f0f16eb63b3c0eb 232 Gene3D G3DSA:3.40.50.1110 26 225 2.0E-36 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS02275 686a7ea349f79bbd6f0f16eb63b3c0eb 232 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 214 7.3E-19 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 90 2.7E-10 T 06-07-2017 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 Gene3D G3DSA:3.30.300.30 501 614 4.2E-15 T 06-07-2017 APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 Pfam PF00501 AMP-binding enzyme 93 506 8.7E-46 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 Gene3D G3DSA:3.40.50.980 265 407 3.1E-15 T 06-07-2017 APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 ProSitePatterns PS00455 Putative AMP-binding domain signature. 257 268 - T 06-07-2017 IPR020845 AMP-binding, conserved site APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 Gene3D G3DSA:3.40.50.980 86 264 6.4E-31 T 06-07-2017 APT55_RS03500 6a51a525a7735590d017160eeec89ef8 628 SUPERFAMILY SSF56801 28 615 3.53E-99 T 06-07-2017 APT55_RS16430 faa8e6b8c47799dcfb07ea174996677b 73 Pfam PF14217 Domain of unknown function (DUF4327) 7 73 1.2E-31 T 06-07-2017 IPR025477 Protein of unknown function DUF4327 APT55_RS20870 3e9f7d2834af90f03cc614abea34997e 371 SUPERFAMILY SSF53335 143 345 4.03E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS20870 3e9f7d2834af90f03cc614abea34997e 371 Pfam PF13649 Methyltransferase domain 189 286 1.2E-20 T 06-07-2017 APT55_RS20870 3e9f7d2834af90f03cc614abea34997e 371 Gene3D G3DSA:3.40.50.150 143 353 2.2E-38 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10235 135af344e71d0497fd9c95d3ee372a32 252 Pfam PF14230 Domain of unknown function (DUF4333) 14 87 6.2E-9 T 06-07-2017 IPR025637 Domain of unknown function DUF4333 APT55_RS26695 9ea7a28001f79a8f80e186e4a3716d80 318 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 225 5.1E-39 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS26695 9ea7a28001f79a8f80e186e4a3716d80 318 SUPERFAMILY SSF51735 1 312 4.39E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS26695 9ea7a28001f79a8f80e186e4a3716d80 318 Gene3D G3DSA:3.40.50.720 1 314 1.6E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16375 7e1c772a35d210f4fdf3c4ccbd6beff5 360 Gene3D G3DSA:3.40.50.2000 175 327 1.6E-24 T 06-07-2017 APT55_RS16375 7e1c772a35d210f4fdf3c4ccbd6beff5 360 SUPERFAMILY SSF53756 2 348 1.21E-66 T 06-07-2017 APT55_RS16375 7e1c772a35d210f4fdf3c4ccbd6beff5 360 Pfam PF13439 Glycosyltransferase Family 4 15 156 8.6E-19 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS16375 7e1c772a35d210f4fdf3c4ccbd6beff5 360 Pfam PF00534 Glycosyl transferases group 1 175 328 1.7E-28 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS23540 17470f8b67ba1f2e0335146fe2db2176 159 SUPERFAMILY SSF53927 6 157 5.27E-31 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 APT55_RS23540 17470f8b67ba1f2e0335146fe2db2176 159 Gene3D G3DSA:3.40.140.10 4 158 2.4E-31 T 06-07-2017 APT55_RS23540 17470f8b67ba1f2e0335146fe2db2176 159 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 103 1.2E-12 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 APT55_RS28075 28b9e4e3b0f45bdb4865fdc7cd16bda2 158 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 57 100 2.0E-9 T 06-07-2017 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger APT55_RS01920 b995f844b53877b9a4d6ca4aed8ba1af 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 92 6.3E-17 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS08445 a675c15139456203d6471926c103abd6 276 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 251 43.878 T 06-07-2017 IPR020936 Uncharacterised protein family UPF0176 APT55_RS08445 a675c15139456203d6471926c103abd6 276 SUPERFAMILY SSF52821 87 222 9.74E-29 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08445 a675c15139456203d6471926c103abd6 276 SMART SM00450 110 211 6.2E-20 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08445 a675c15139456203d6471926c103abd6 276 Gene3D G3DSA:3.40.250.10 100 223 1.6E-40 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS08445 a675c15139456203d6471926c103abd6 276 Pfam PF00581 Rhodanese-like domain 119 207 1.2E-6 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS07870 8605e098dec246878ebe026579b7d874 151 Gene3D G3DSA:3.40.50.300 2 141 4.1E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07870 8605e098dec246878ebe026579b7d874 151 SUPERFAMILY SSF52540 22 121 1.86E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07870 8605e098dec246878ebe026579b7d874 151 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5 140 6.9E-40 T 06-07-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 APT55_RS07870 8605e098dec246878ebe026579b7d874 151 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 6 133 5.5E-32 T 06-07-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 SUPERFAMILY SSF55620 134 270 8.89E-44 T 06-07-2017 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 130 2.6E-26 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 138 269 1.1E-33 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 SUPERFAMILY SSF55620 1 131 1.0E-39 T 06-07-2017 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 Gene3D G3DSA:3.30.479.10 133 270 4.6E-46 T 06-07-2017 APT55_RS09780 87f7e08bde69d622c0a84cacce3c2ebd 289 Gene3D G3DSA:3.30.479.10 1 130 6.7E-38 T 06-07-2017 APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 11 263 6.0E-114 T 06-07-2017 IPR005137 Photosystem I BtpA, assembly APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 32 202 5.0E-80 T 06-07-2017 IPR005137 Photosystem I BtpA, assembly APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 SUPERFAMILY SSF51366 3 266 1.65E-29 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 PIRSF PIRSF005956 1 266 3.2E-107 T 06-07-2017 IPR005137 Photosystem I BtpA, assembly APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 Pfam PF03437 BtpA family 11 263 6.8E-109 T 06-07-2017 IPR005137 Photosystem I BtpA, assembly APT55_RS07460 5cab0c31fbb3120c816d7bce9c98f3d1 282 Gene3D G3DSA:3.20.20.70 39 240 8.0E-6 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS31370 3665bfd68532cce55025e2f5898ac751 202 Pfam PF05419 GUN4-like 53 156 8.6E-29 T 06-07-2017 IPR008629 GUN4-like APT55_RS31370 3665bfd68532cce55025e2f5898ac751 202 SUPERFAMILY SSF140869 51 174 4.71E-32 T 06-07-2017 APT55_RS13285 7fb79dd1d36e8a0dfefc115c4d87e472 397 Pfam PF13641 Glycosyltransferase like family 2 44 263 1.1E-22 T 06-07-2017 APT55_RS13285 7fb79dd1d36e8a0dfefc115c4d87e472 397 SUPERFAMILY SSF53448 43 291 3.64E-34 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS13285 7fb79dd1d36e8a0dfefc115c4d87e472 397 Gene3D G3DSA:3.90.550.10 44 278 1.3E-18 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12725 8e2e7d34c221edc50cc3c1c55d5cf561 331 Pfam PF13489 Methyltransferase domain 104 265 2.0E-23 T 06-07-2017 APT55_RS12725 8e2e7d34c221edc50cc3c1c55d5cf561 331 SUPERFAMILY SSF53335 101 280 1.96E-31 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12725 8e2e7d34c221edc50cc3c1c55d5cf561 331 Gene3D G3DSA:3.40.50.150 112 270 7.3E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27370 099db30b69ab4c4753f3e3b030a3c9da 250 Pfam PF00149 Calcineurin-like phosphoesterase 9 171 1.0E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS27370 099db30b69ab4c4753f3e3b030a3c9da 250 SUPERFAMILY SSF56300 7 235 1.4E-45 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS27370 099db30b69ab4c4753f3e3b030a3c9da 250 Gene3D G3DSA:3.60.21.10 4 222 3.1E-45 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS22900 49c40b08e00aa4c26b93766cd82b03ce 168 Pfam PF09654 Protein of unknown function (DUF2396) 22 77 4.7E-4 T 06-07-2017 IPR013472 Conserved hypothetical protein CHP02652 APT55_RS24945 f60bb6ff2b73ff00ab4fc7be5ceede2e 472 Gene3D G3DSA:1.25.40.10 310 431 2.6E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24945 f60bb6ff2b73ff00ab4fc7be5ceede2e 472 Gene3D G3DSA:1.25.40.10 81 101 2.6E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26865 5e2009ce32df924fca93a8897819ba1a 311 Pfam PF00487 Fatty acid desaturase 47 265 7.8E-35 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS28625 2c46fc73ccced033f0f676d7bf3102f9 1403 Gene3D G3DSA:2.80.10.50 353 470 2.9E-15 T 06-07-2017 APT55_RS28625 2c46fc73ccced033f0f676d7bf3102f9 1403 SUPERFAMILY SSF49695 504 561 2.78E-6 T 06-07-2017 IPR011024 Gamma-crystallin-related APT55_RS28625 2c46fc73ccced033f0f676d7bf3102f9 1403 Gene3D G3DSA:2.60.20.10 507 578 2.7E-6 T 06-07-2017 APT55_RS28625 2c46fc73ccced033f0f676d7bf3102f9 1403 SUPERFAMILY SSF50405 353 470 2.78E-17 T 06-07-2017 IPR008999 Actin cross-linking APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 SUPERFAMILY SSF48371 5 198 3.0E-36 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 Gene3D G3DSA:1.25.10.10 7 197 5.1E-37 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 Pfam PF13646 HEAT repeats 75 161 1.2E-10 T 06-07-2017 APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 SMART SM00567 E-Z type HEAT repeats 21 52 510.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 SMART SM00567 E-Z type HEAT repeats 87 118 15.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 SMART SM00567 E-Z type HEAT repeats 120 151 40.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS16230 196cfa02ec95b113ae89b27b8d44a695 201 SMART SM00567 E-Z type HEAT repeats 152 182 35.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 SUPERFAMILY SSF56574 27 401 9.16E-117 T 06-07-2017 IPR023796 Serpin domain APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 ProSitePatterns PS00284 Serpins signature. 374 384 - T 06-07-2017 IPR023795 Serpin, conserved site APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 Gene3D G3DSA:2.30.39.10 201 297 2.6E-47 T 06-07-2017 APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 Gene3D G3DSA:2.30.39.10 353 401 2.6E-47 T 06-07-2017 APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 Pfam PF00079 Serpin (serine protease inhibitor) 40 401 5.0E-120 T 06-07-2017 IPR023796 Serpin domain APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 SMART SM00093 46 401 1.8E-109 T 06-07-2017 IPR023796 Serpin domain APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 Gene3D G3DSA:3.30.497.10 298 352 5.9E-73 T 06-07-2017 APT55_RS04905 dc32dd44b25b37e43383092fb00a0c83 402 Gene3D G3DSA:3.30.497.10 40 200 5.9E-73 T 06-07-2017 APT55_RS20345 0298e26b6f868aceb46b913527ca634a 448 Gene3D G3DSA:3.40.190.10 39 161 3.0E-19 T 06-07-2017 APT55_RS20345 0298e26b6f868aceb46b913527ca634a 448 Pfam PF01547 Bacterial extracellular solute-binding protein 51 338 1.0E-49 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 APT55_RS20345 0298e26b6f868aceb46b913527ca634a 448 Gene3D G3DSA:3.40.190.10 162 363 7.0E-58 T 06-07-2017 APT55_RS20345 0298e26b6f868aceb46b913527ca634a 448 SUPERFAMILY SSF53850 25 441 5.2E-80 T 06-07-2017 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 153 254 4.5E-42 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 PRINTS PR01703 Manganese superoxide dismutase signature 83 96 1.1E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 PRINTS PR01703 Manganese superoxide dismutase signature 219 231 1.1E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 PRINTS PR01703 Manganese superoxide dismutase signature 129 142 1.1E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 PRINTS PR01703 Manganese superoxide dismutase signature 182 190 1.1E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 PRINTS PR01703 Manganese superoxide dismutase signature 62 73 1.1E-22 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 221 228 - T 06-07-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 SUPERFAMILY SSF46609 53 147 3.4E-34 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 60 146 1.6E-25 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 Gene3D G3DSA:1.10.287.990 76 146 3.5E-30 T 06-07-2017 APT55_RS14205 b392b39fc08d5b2f4124ed01522a32ab 265 SUPERFAMILY SSF54719 148 260 4.06E-46 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 Gene3D G3DSA:2.60.120.10 609 739 6.8E-26 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 SUPERFAMILY SSF52091 465 576 1.96E-10 T 06-07-2017 IPR002645 STAS domain APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 Gene3D G3DSA:3.30.750.24 467 558 1.0E-7 T 06-07-2017 IPR002645 STAS domain APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 Pfam PF00027 Cyclic nucleotide-binding domain 624 706 1.4E-18 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 Pfam PF00916 Sulfate permease family 18 404 8.3E-29 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 SUPERFAMILY SSF51206 609 731 1.23E-26 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 SMART SM00100 604 722 3.1E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS10000 511df9ef464558f86aa892769f2e2062 743 Pfam PF01740 STAS domain 467 559 4.5E-9 T 06-07-2017 IPR002645 STAS domain APT55_RS15190 a07de1aeed20d5000e5e92286281a33d 261 Pfam PF13529 Peptidase_C39 like family 90 213 4.8E-19 T 06-07-2017 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Gene3D G3DSA:3.50.50.60 6 130 5.3E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Gene3D G3DSA:3.50.50.60 398 499 5.3E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Gene3D G3DSA:3.50.50.60 180 286 5.3E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Pfam PF00996 GDP dissociation inhibitor 5 61 2.4E-4 T 06-07-2017 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Pfam PF00732 GMC oxidoreductase 82 283 1.3E-6 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 SUPERFAMILY SSF51905 6 291 4.26E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 SUPERFAMILY SSF51905 440 500 4.26E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS10415 5777b99c046ef840cd7decd89f2f9e39 502 Pfam PF05199 GMC oxidoreductase 433 491 3.8E-18 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT55_RS10605 e6418e54cb8c2f98dc2e4db04a50b52a 400 Pfam PF00534 Glycosyl transferases group 1 199 368 2.0E-34 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10605 e6418e54cb8c2f98dc2e4db04a50b52a 400 Gene3D G3DSA:3.40.50.2000 204 368 9.3E-25 T 06-07-2017 APT55_RS10605 e6418e54cb8c2f98dc2e4db04a50b52a 400 Gene3D G3DSA:3.40.50.2000 32 150 4.3E-4 T 06-07-2017 APT55_RS10605 e6418e54cb8c2f98dc2e4db04a50b52a 400 SUPERFAMILY SSF53756 8 389 1.19E-72 T 06-07-2017 APT55_RS10605 e6418e54cb8c2f98dc2e4db04a50b52a 400 Pfam PF13439 Glycosyltransferase Family 4 45 193 4.3E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 Pfam PF00574 Clp protease 27 216 6.7E-52 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 Gene3D G3DSA:3.90.226.10 21 219 2.5E-63 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 PRINTS PR00127 Clp protease catalytic subunit P signature 25 40 1.6E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 1.6E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 PRINTS PR00127 Clp protease catalytic subunit P signature 135 154 1.6E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 PRINTS PR00127 Clp protease catalytic subunit P signature 114 131 1.6E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 PRINTS PR00127 Clp protease catalytic subunit P signature 192 211 1.6E-28 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 2 217 32.18 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT55_RS08800 892bfa283a3c1d8a74917495ab0b4cf4 228 SUPERFAMILY SSF52096 19 220 3.05E-52 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS14155 68c14871372289f0345caab5836c4345 269 Gene3D G3DSA:3.40.50.720 1 260 2.3E-92 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 6.9E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS14155 68c14871372289f0345caab5836c4345 269 SUPERFAMILY SSF51735 6 260 3.55E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 1.6E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 1.6E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 1.6E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS14155 68c14871372289f0345caab5836c4345 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 258 1.0E-67 T 06-07-2017 APT55_RS12215 102d7aa8f3a8771f81c0553723b52859 416 Pfam PF01926 50S ribosome-binding GTPase 58 179 3.3E-7 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS12215 102d7aa8f3a8771f81c0553723b52859 416 Gene3D G3DSA:3.40.50.300 60 255 7.0E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS12215 102d7aa8f3a8771f81c0553723b52859 416 Pfam PF05128 Domain of unknown function (DUF697) 272 348 1.6E-5 T 06-07-2017 IPR021147 Protein of unknown function DUF697 APT55_RS12215 102d7aa8f3a8771f81c0553723b52859 416 SUPERFAMILY SSF52540 41 255 3.12E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00785 e9f55d0a95593d8ca0f54990024ad369 253 Pfam PF13599 Pentapeptide repeats (9 copies) 97 169 5.2E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS00785 e9f55d0a95593d8ca0f54990024ad369 253 SUPERFAMILY SSF141571 40 232 1.26E-34 T 06-07-2017 APT55_RS00785 e9f55d0a95593d8ca0f54990024ad369 253 Pfam PF00805 Pentapeptide repeats (8 copies) 39 77 4.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS00785 e9f55d0a95593d8ca0f54990024ad369 253 Pfam PF00805 Pentapeptide repeats (8 copies) 190 223 6.5E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS17105 bfaff03ec034e4d1b26e1c299b85a399 144 Gene3D G3DSA:2.60.120.380 60 137 1.7E-6 T 06-07-2017 APT55_RS23810 41589de5cfb29168bef27bbd800af707 206 Hamap MF_01459 Chromophore lyase CpcS/CpeS [cpcS]. 41 205 18.896 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS23810 41589de5cfb29168bef27bbd800af707 206 Gene3D G3DSA:2.40.128.20 43 205 4.4E-49 T 06-07-2017 IPR012674 Calycin APT55_RS23810 41589de5cfb29168bef27bbd800af707 206 Pfam PF09367 CpeS-like protein 43 204 2.1E-41 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS22045 5b4d0e3b90fc2f68384d63fef3f4ca10 162 Pfam PF00502 Phycobilisome protein 8 161 3.9E-44 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22045 5b4d0e3b90fc2f68384d63fef3f4ca10 162 SUPERFAMILY SSF46458 1 161 1.19E-50 T 06-07-2017 IPR009050 Globin-like APT55_RS22045 5b4d0e3b90fc2f68384d63fef3f4ca10 162 Gene3D G3DSA:1.10.490.20 1 162 2.6E-50 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS22045 5b4d0e3b90fc2f68384d63fef3f4ca10 162 PIRSF PIRSF000081 1 162 3.5E-40 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS03485 2557ca2aaa665cbc37453789c6b5b0a6 232 Pfam PF10014 2OG-Fe dioxygenase 36 222 4.1E-63 T 06-07-2017 IPR018724 2OG-Fe dioxygenase APT55_RS01560 d3e369e4745cde51f7fd2a53d257c592 475 Pfam PF03055 Retinal pigment epithelial membrane protein 26 472 1.5E-97 T 06-07-2017 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 Gene3D G3DSA:3.50.50.60 2 158 5.7E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 5 147 3.9E-8 T 06-07-2017 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 SUPERFAMILY SSF51905 246 324 2.6E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 SUPERFAMILY SSF51905 1 158 2.6E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 2 285 3.7E-66 T 06-07-2017 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.3E-10 T 06-07-2017 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 137 152 1.3E-10 T 06-07-2017 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 250 265 1.3E-10 T 06-07-2017 APT55_RS17645 d78c38cc916c6754e1d646a197c54414 373 Gene3D G3DSA:3.30.9.10 159 292 3.0E-17 T 06-07-2017 APT55_RS20960 3c80bdbb12fae20f0a4358294f80e303 408 Pfam PF08495 FIST N domain 47 243 4.4E-37 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS20960 3c80bdbb12fae20f0a4358294f80e303 408 SMART SM00897 45 244 5.9E-37 T 06-07-2017 IPR013702 FIST domain, N-terminal APT55_RS20960 3c80bdbb12fae20f0a4358294f80e303 408 SMART SM01204 245 391 1.4E-17 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS20960 3c80bdbb12fae20f0a4358294f80e303 408 Pfam PF10442 FIST C domain 246 390 1.5E-20 T 06-07-2017 IPR019494 FIST, C-domain APT55_RS18440 34e33e6a09b54d776d3b64fd61e15039 250 Pfam PF10099 Anti-sigma-K factor rskA 62 246 2.7E-18 T 06-07-2017 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 Pfam PF12697 Alpha/beta hydrolase family 41 294 2.0E-25 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00412 Epoxide hydrolase signature 122 135 2.8E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00412 Epoxide hydrolase signature 277 299 2.8E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00412 Epoxide hydrolase signature 45 63 2.8E-8 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 Gene3D G3DSA:3.40.50.1820 18 302 1.2E-60 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 79 4.2E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 4.2E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 4.2E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS12925 ba1abc46a56a2b406b632058d7dcdc28 304 SUPERFAMILY SSF53474 21 302 2.06E-58 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS07675 94a627af3c8abb457b552a55f5daa6dc 351 Pfam PF11285 Protein of unknown function (DUF3086) 72 344 1.0E-130 T 06-07-2017 IPR021437 Protein of unknown function DUF3086 APT55_RS07825 9505eb980a4440778581c23c59366803 417 Gene3D G3DSA:3.40.50.410 39 213 3.9E-31 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS07825 9505eb980a4440778581c23c59366803 417 SUPERFAMILY SSF53300 39 214 1.06E-35 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS07825 9505eb980a4440778581c23c59366803 417 Pfam PF00092 von Willebrand factor type A domain 43 198 2.2E-21 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS07825 9505eb980a4440778581c23c59366803 417 SMART SM00327 41 212 2.6E-27 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS16725 feff9c5f2269021e44c081d28b80da8a 100 Pfam PF01817 Chorismate mutase type II 14 90 3.3E-16 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16725 feff9c5f2269021e44c081d28b80da8a 100 Gene3D G3DSA:1.20.59.10 3 90 7.3E-16 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16725 feff9c5f2269021e44c081d28b80da8a 100 SMART SM00830 14 93 2.8E-21 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16725 feff9c5f2269021e44c081d28b80da8a 100 SUPERFAMILY SSF48600 1 92 3.05E-23 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16725 feff9c5f2269021e44c081d28b80da8a 100 PIRSF PIRSF029775 1 100 2.8E-37 T 06-07-2017 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS04545 cd7992e32014cc6cac7aae66fea434af 89 Pfam PF12058 Protein of unknown function (DUF3539) 3 88 1.3E-40 T 06-07-2017 IPR021926 Protein of unknown function DUF3539 APT55_RS25010 48dbe8b582bbcc7be51ecb68b37db06e 350 Pfam PF01032 FecCD transport family 39 344 1.4E-87 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS25010 48dbe8b582bbcc7be51ecb68b37db06e 350 Gene3D G3DSA:1.10.3470.10 27 347 6.1E-98 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25010 48dbe8b582bbcc7be51ecb68b37db06e 350 SUPERFAMILY SSF81345 22 345 1.57E-73 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 Pfam PF00005 ABC transporter 42 183 1.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 SUPERFAMILY SSF52540 22 251 2.72E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 SMART SM00382 51 233 6.7E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 42 271 8.4E-113 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT55_RS16060 37be9494b5a913778c43d5481d837aa8 279 Gene3D G3DSA:3.40.50.300 22 242 2.0E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27125 593a66cad0d84a30cba5ac255d8f54d7 231 SUPERFAMILY SSF53790 1 228 4.84E-54 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27125 593a66cad0d84a30cba5ac255d8f54d7 231 Gene3D G3DSA:3.40.1010.10 1 125 3.6E-35 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27125 593a66cad0d84a30cba5ac255d8f54d7 231 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 209 3.1E-48 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS27125 593a66cad0d84a30cba5ac255d8f54d7 231 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 226 3.4E-64 T 06-07-2017 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 APT55_RS27125 593a66cad0d84a30cba5ac255d8f54d7 231 PIRSF PIRSF036427 1 231 7.3E-71 T 06-07-2017 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 9 194 3.7E-66 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 Gene3D G3DSA:3.40.50.1470 5 195 2.1E-70 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 SUPERFAMILY SSF53178 9 195 2.35E-64 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 21 34 - T 06-07-2017 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 Pfam PF01195 Peptidyl-tRNA hydrolase 10 191 5.9E-57 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT55_RS04230 76735b9e096bb456a8b0b4d4354d10fe 204 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 8 187 34.914 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 60 339 7.5E-91 T 06-07-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 SUPERFAMILY SSF56176 59 242 9.81E-46 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 SUPERFAMILY SSF56194 237 340 5.23E-38 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Pfam PF01565 FAD binding domain 75 203 1.2E-31 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 341 91.428 T 06-07-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 243 338 1.1E-30 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Gene3D G3DSA:3.30.43.10 53 124 1.0E-25 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Gene3D G3DSA:3.30.465.10 127 265 1.8E-42 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS00545 d41256c64533616996b29610ba5103c1 341 Gene3D G3DSA:3.90.78.10 266 340 3.2E-33 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT55_RS04580 b918da4f549aca0283f257db2e474f06 620 SUPERFAMILY SSF51905 16 235 3.56E-8 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04580 b918da4f549aca0283f257db2e474f06 620 Gene3D G3DSA:3.50.50.60 16 192 1.1E-7 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04580 b918da4f549aca0283f257db2e474f06 620 Pfam PF13454 FAD-NAD(P)-binding 17 185 1.5E-28 T 06-07-2017 APT55_RS25195 8986909b30d302dd3e329b07ad874e50 183 Pfam PF07705 CARDB 75 179 1.0E-6 T 06-07-2017 IPR011635 CARDB domain APT55_RS18575 60bf87162901206c272b628a3e333a2c 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 110 218 2.9E-21 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS18575 60bf87162901206c272b628a3e333a2c 710 Pfam PF00593 TonB dependent receptor 476 706 8.1E-29 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS18575 60bf87162901206c272b628a3e333a2c 710 SUPERFAMILY SSF56935 107 709 4.71E-99 T 06-07-2017 APT55_RS18575 60bf87162901206c272b628a3e333a2c 710 Gene3D G3DSA:2.170.130.10 111 221 1.8E-26 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 APT55_RS18575 60bf87162901206c272b628a3e333a2c 710 Gene3D G3DSA:2.40.170.20 222 706 2.6E-80 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 3.9E-27 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 3.9E-27 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 PRINTS PR00996 Glutamate methyltransferase family signature 105 125 3.9E-27 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 PRINTS PR00996 Glutamate methyltransferase family signature 137 153 3.9E-27 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 3.9E-27 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 Pfam PF03705 CheR methyltransferase, all-alpha domain 13 63 2.7E-9 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 Gene3D G3DSA:3.40.50.150 75 272 2.5E-60 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 256 2.0E-41 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 SUPERFAMILY SSF53335 76 256 7.02E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 SUPERFAMILY SSF47757 6 74 1.12E-5 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT55_RS07590 e554c98ebe66e545857e576049d6eb4b 276 SMART SM00138 10 273 1.2E-35 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT55_RS28040 8d7cbf86c41c1499bd8646ec1210247a 233 Gene3D G3DSA:3.90.420.10 53 230 1.5E-54 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS28040 8d7cbf86c41c1499bd8646ec1210247a 233 Pfam PF00174 Oxidoreductase molybdopterin binding domain 76 222 3.6E-36 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS28040 8d7cbf86c41c1499bd8646ec1210247a 233 SUPERFAMILY SSF56524 36 232 2.09E-59 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT55_RS25445 96426aab33c1955800f718d38a5e644a 75 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 51 62 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS25445 96426aab33c1955800f718d38a5e644a 75 Gene3D G3DSA:3.30.70.20 12 68 1.9E-14 T 06-07-2017 APT55_RS25445 96426aab33c1955800f718d38a5e644a 75 Pfam PF13187 4Fe-4S dicluster domain 19 66 1.1E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT55_RS25445 96426aab33c1955800f718d38a5e644a 75 SUPERFAMILY SSF54862 9 71 2.43E-15 T 06-07-2017 APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 SUPERFAMILY SSF51556 55 347 2.18E-87 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 Gene3D G3DSA:2.30.40.10 1 59 2.6E-7 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 16 344 4.5E-75 T 06-07-2017 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 PIRSF PIRSF038994 2 350 7.8E-108 T 06-07-2017 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 Gene3D G3DSA:3.20.20.140 60 347 3.3E-99 T 06-07-2017 APT55_RS23625 f0e951500efb32bd648311021bd1f1fb 377 SUPERFAMILY SSF51338 2 57 2.41E-5 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS05445 a8cd4fb80fc61dccd645ea173701b928 172 SUPERFAMILY SSF81585 21 104 1.5E-9 T 06-07-2017 APT55_RS05445 a8cd4fb80fc61dccd645ea173701b928 172 SUPERFAMILY SSF47781 87 172 7.78E-17 T 06-07-2017 IPR010994 RuvA domain 2-like APT55_RS05445 a8cd4fb80fc61dccd645ea173701b928 172 Pfam PF12836 Helix-hairpin-helix motif 109 171 7.0E-12 T 06-07-2017 APT55_RS05445 a8cd4fb80fc61dccd645ea173701b928 172 Gene3D G3DSA:1.10.150.320 31 94 5.5E-4 T 06-07-2017 APT55_RS05445 a8cd4fb80fc61dccd645ea173701b928 172 Gene3D G3DSA:1.10.150.280 95 168 1.1E-10 T 06-07-2017 APT55_RS27165 5929a2403e0610f053611a1623ba91e4 195 SUPERFAMILY SSF52980 2 172 1.45E-22 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS27165 5929a2403e0610f053611a1623ba91e4 195 Pfam PF05685 Putative restriction endonuclease 13 178 7.5E-33 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27165 5929a2403e0610f053611a1623ba91e4 195 Gene3D G3DSA:3.90.1570.10 2 154 5.4E-22 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS07020 faf2b3f6a8e78c7c5456a2a669c60b7f 121 Pfam PF02211 Nitrile hydratase beta subunit 25 114 3.3E-13 T 06-07-2017 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 APT55_RS07020 faf2b3f6a8e78c7c5456a2a669c60b7f 121 TIGRFAM TIGR03889 nitrile_acc: nitrile hydratase accessory protein 29 102 6.4E-22 T 06-07-2017 IPR023808 Nitrile hydratase accessory protein, putative APT55_RS07020 faf2b3f6a8e78c7c5456a2a669c60b7f 121 SUPERFAMILY SSF50090 18 112 6.67E-23 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain APT55_RS07020 faf2b3f6a8e78c7c5456a2a669c60b7f 121 Gene3D G3DSA:1.10.472.20 18 114 4.9E-25 T 06-07-2017 APT55_RS15270 f72a38a073f436c2f56fdb5e277a6655 160 SUPERFAMILY SSF75169 33 145 1.2E-11 T 06-07-2017 IPR027396 DsrEFH-like APT55_RS15270 f72a38a073f436c2f56fdb5e277a6655 160 TIGRFAM TIGR04044 MSMEG_0572_fam: MSMEG_0572 family protein 2 160 3.8E-89 T 06-07-2017 IPR023847 Conserved hypothetical protein CHP04044, MSMEG0572 APT55_RS15270 f72a38a073f436c2f56fdb5e277a6655 160 Gene3D G3DSA:3.40.1260.10 54 143 1.6E-5 T 06-07-2017 IPR027396 DsrEFH-like APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 SUPERFAMILY SSF48371 493 669 6.64E-13 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 SUPERFAMILY SSF48371 698 757 6.64E-13 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 Gene3D G3DSA:1.25.10.10 640 742 8.4E-14 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 Gene3D G3DSA:1.25.10.10 491 603 8.4E-14 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 SMART SM00567 E-Z type HEAT repeats 486 518 900.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS12915 adf1e04ddad6071bb100e55cad062639 1008 SMART SM00567 E-Z type HEAT repeats 713 742 7.5E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25485 d1c0f9fea78c2b9cad2e06806b7def8f 472 Pfam PF01229 Glycosyl hydrolases family 39 198 313 3.3E-5 T 06-07-2017 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 APT55_RS25485 d1c0f9fea78c2b9cad2e06806b7def8f 472 Gene3D G3DSA:3.20.20.80 69 334 7.1E-22 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25485 d1c0f9fea78c2b9cad2e06806b7def8f 472 SUPERFAMILY SSF51445 69 375 8.62E-29 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 211 245 4.7E-5 T 06-07-2017 IPR022441 Parallel beta-helix repeat-2 APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF07602 Protein of unknown function (DUF1565) 15 283 6.3E-47 T 06-07-2017 IPR011459 Domain of unknown function DUF1565 APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 103 126 9200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 173 194 1400.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 150 172 34.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 195 216 2200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 217 239 3.2 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SMART SM00710 127 149 540.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 693 730 0.022 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 624 666 6.8E-15 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 428 470 2.2E-12 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 566 607 1.9E-12 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 491 534 5.0E-4 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Pfam PF00395 S-layer homology domain 371 411 5.0E-13 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 Gene3D G3DSA:2.160.20.10 4 272 2.7E-30 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS17140 57ef0e0bf29afb275df961dd2da29a6a 755 SUPERFAMILY SSF51126 4 333 1.82E-44 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS21840 03fd95f0d747dce9b15228bc9d0bdb38 161 SUPERFAMILY SSF54292 3 94 5.44E-21 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS21840 03fd95f0d747dce9b15228bc9d0bdb38 161 Gene3D G3DSA:3.10.20.30 4 97 3.0E-22 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS21840 03fd95f0d747dce9b15228bc9d0bdb38 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 86 2.7E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS07165 f8969e39df5f68e822ffc56e538d4bd9 412 SUPERFAMILY SSF53756 32 404 1.12E-70 T 06-07-2017 APT55_RS07165 f8969e39df5f68e822ffc56e538d4bd9 412 Pfam PF00534 Glycosyl transferases group 1 220 382 8.6E-36 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS07165 f8969e39df5f68e822ffc56e538d4bd9 412 Gene3D G3DSA:3.40.50.2000 208 380 1.3E-25 T 06-07-2017 APT55_RS07165 f8969e39df5f68e822ffc56e538d4bd9 412 Pfam PF13439 Glycosyltransferase Family 4 109 211 6.6E-12 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS28255 6304212444197dcff92ec244183d9fb2 184 Pfam PF06778 Chlorite dismutase 46 177 8.7E-10 T 06-07-2017 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase APT55_RS28255 6304212444197dcff92ec244183d9fb2 184 SUPERFAMILY SSF54909 39 179 1.21E-20 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS28255 6304212444197dcff92ec244183d9fb2 184 Gene3D G3DSA:3.30.70.1100 85 177 7.8E-8 T 06-07-2017 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 Gene3D G3DSA:3.10.580.10 477 603 1.8E-19 T 06-07-2017 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 SUPERFAMILY SSF54631 471 603 6.97E-22 T 06-07-2017 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 Gene3D G3DSA:1.10.3080.10 38 445 9.8E-81 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 SMART SM00116 558 608 0.066 T 06-07-2017 IPR000644 CBS domain APT55_RS21480 a80f921d20911f36805b997f81341a70 640 SMART SM00116 486 534 6.4E-5 T 06-07-2017 IPR000644 CBS domain APT55_RS21480 a80f921d20911f36805b997f81341a70 640 SUPERFAMILY SSF81340 28 446 7.19E-92 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 PRINTS PR00762 Chloride channel signature 352 372 1.8E-27 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 PRINTS PR00762 Chloride channel signature 179 198 1.8E-27 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 PRINTS PR00762 Chloride channel signature 390 406 1.8E-27 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 PRINTS PR00762 Chloride channel signature 408 427 1.8E-27 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 PRINTS PR00762 Chloride channel signature 128 147 1.8E-27 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 Pfam PF00654 Voltage gated chloride channel 90 440 4.7E-80 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS21480 a80f921d20911f36805b997f81341a70 640 Pfam PF00571 CBS domain 552 599 2.7E-7 T 06-07-2017 IPR000644 CBS domain APT55_RS21480 a80f921d20911f36805b997f81341a70 640 Pfam PF00571 CBS domain 479 534 2.0E-7 T 06-07-2017 IPR000644 CBS domain APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 24 236 1.9E-86 T 06-07-2017 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 SUPERFAMILY SSF52540 24 240 6.39E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 SMART SM00382 50 236 2.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 Gene3D G3DSA:3.40.50.300 23 238 1.9E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21560 be4543a691e68e2d1f047505ca8546c9 242 Pfam PF00005 ABC transporter 41 188 2.1E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS27915 3d8056bc3a35993fcb56044d3e4eeeea 325 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 85 305 5.8E-10 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27915 3d8056bc3a35993fcb56044d3e4eeeea 325 Gene3D G3DSA:3.40.50.1110 213 315 6.7E-20 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27915 3d8056bc3a35993fcb56044d3e4eeeea 325 Gene3D G3DSA:3.40.50.1110 81 161 6.7E-20 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27915 3d8056bc3a35993fcb56044d3e4eeeea 325 SUPERFAMILY SSF52266 80 158 4.73E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27915 3d8056bc3a35993fcb56044d3e4eeeea 325 SUPERFAMILY SSF52266 210 314 4.73E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS31840 6385cbe0fdb9a37960eda4b3af44a508 264 Pfam PF00639 PPIC-type PPIASE domain 146 223 1.6E-13 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS31840 6385cbe0fdb9a37960eda4b3af44a508 264 SUPERFAMILY SSF54534 120 223 1.11E-17 T 06-07-2017 APT55_RS31840 6385cbe0fdb9a37960eda4b3af44a508 264 Gene3D G3DSA:3.10.50.40 142 245 7.4E-19 T 06-07-2017 APT55_RS31840 6385cbe0fdb9a37960eda4b3af44a508 264 SUPERFAMILY SSF109998 18 160 1.14E-9 T 06-07-2017 IPR027304 Trigger factor/SurA domain APT55_RS13480 79f282bc73240ddd650a298a5edaa475 195 Pfam PF09367 CpeS-like protein 3 173 1.3E-76 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS13480 79f282bc73240ddd650a298a5edaa475 195 Gene3D G3DSA:2.40.128.20 1 182 4.5E-76 T 06-07-2017 IPR012674 Calycin APT55_RS13480 79f282bc73240ddd650a298a5edaa475 195 Hamap MF_01459 Chromophore lyase CpcS/CpeS [cpcS]. 2 173 29.856 T 06-07-2017 IPR018536 Chromophore lyase CpcS/CpeS GO:0017009 APT55_RS10105 f7b4dedd7ac5ae237c722bdaa70add97 166 Pfam PF09150 Orange carotenoid protein, N-terminal 5 154 3.0E-57 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS10105 f7b4dedd7ac5ae237c722bdaa70add97 166 SUPERFAMILY SSF81930 2 158 4.45E-59 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS10105 f7b4dedd7ac5ae237c722bdaa70add97 166 Gene3D G3DSA:1.10.2090.10 8 157 3.5E-60 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS30545 90d76b4042ffce5297c236a73db3ca7d 181 Pfam PF08852 Protein of unknown function (DUF1822) 13 179 5.4E-38 T 06-07-2017 IPR014951 Protein of unknown function DUF1822 APT55_RS03980 809ad4eb45541f0a75554ed0c2226f18 156 Pfam PF14328 Domain of unknown function (DUF4385) 5 147 7.2E-70 T 06-07-2017 IPR025494 Protein of unknown function DUF4385 APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 SUPERFAMILY SSF52980 9 177 5.9E-26 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 Gene3D G3DSA:1.10.287.950 197 261 4.1E-5 T 06-07-2017 APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 SUPERFAMILY SSF58104 194 261 3.4E-6 T 06-07-2017 APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 Pfam PF11839 Alanine-zipper, major outer membrane lipoprotein 196 261 1.9E-8 T 06-07-2017 IPR021793 Major outer membrane lipoprotein Oprl APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 Pfam PF05685 Putative restriction endonuclease 44 159 2.1E-14 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS09390 6067b5c3a533326948ca5199a27bf2f2 268 Gene3D G3DSA:3.90.1570.10 9 153 2.4E-19 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS07015 02abe715cbf7c08a9f579cfd8f8c4b8b 229 PIRSF PIRSF016919 19 218 3.7E-25 T 06-07-2017 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein APT55_RS07015 02abe715cbf7c08a9f579cfd8f8c4b8b 229 Pfam PF04955 HupE / UreJ protein 30 213 3.1E-40 T 06-07-2017 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein APT55_RS02940 c3bb7dc19fa59fb812b4b092eec9eb37 278 Pfam PF01925 Sulfite exporter TauE/SafE 13 269 1.7E-43 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 APT55_RS16115 31a81eaec9e7d08b3ac8a69d72c0b4e7 205 SUPERFAMILY SSF55729 2 200 5.06E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS16115 31a81eaec9e7d08b3ac8a69d72c0b4e7 205 Gene3D G3DSA:3.40.630.30 2 203 5.5E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS16115 31a81eaec9e7d08b3ac8a69d72c0b4e7 205 Pfam PF13673 Acetyltransferase (GNAT) domain 125 199 6.8E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS20125 f684cf1ec2a5a6a9565bc09e35e0eaae 138 Pfam PF08814 XisH protein 2 134 1.3E-56 T 06-07-2017 IPR014919 XisH protein APT55_RS20125 f684cf1ec2a5a6a9565bc09e35e0eaae 138 SUPERFAMILY SSF52980 4 138 1.16E-55 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS20125 f684cf1ec2a5a6a9565bc09e35e0eaae 138 Gene3D G3DSA:3.40.1350.10 2 138 1.9E-59 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS10160 09261ed0313b5db4c28ffa4b53598f0c 98 SMART SM00360 2 75 2.9E-27 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS10160 09261ed0313b5db4c28ffa4b53598f0c 98 SUPERFAMILY SSF54928 2 96 5.51E-32 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS10160 09261ed0313b5db4c28ffa4b53598f0c 98 Gene3D G3DSA:3.30.70.330 2 93 2.2E-30 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS10160 09261ed0313b5db4c28ffa4b53598f0c 98 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 1.3E-21 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS04220 e066d39de4864741ddbe3416a140b874 64 Gene3D G3DSA:1.20.5.880 1 62 4.7E-38 T 06-07-2017 APT55_RS04220 e066d39de4864741ddbe3416a140b874 64 Pfam PF00737 Photosystem II 10 kDa phosphoprotein 4 55 3.7E-33 T 06-07-2017 IPR001056 Photosystem II PsbH, phosphoprotein GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 APT55_RS04220 e066d39de4864741ddbe3416a140b874 64 SUPERFAMILY SSF161025 3 63 1.83E-30 T 06-07-2017 APT55_RS04220 e066d39de4864741ddbe3416a140b874 64 ProDom PD003584 PHOTOSYSTEM II PHOSPHOPROTEIN CHLOROPLAST PHOTOSYNTHESIS H MEMBRANE CENTER REACTION PSII-H 2 62 2.0E-15 T 06-07-2017 IPR001056 Photosystem II PsbH, phosphoprotein GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 APT55_RS04220 e066d39de4864741ddbe3416a140b874 64 Hamap MF_00752 Photosystem II reaction center protein H [psbH]. 1 61 23.968 T 06-07-2017 IPR001056 Photosystem II PsbH, phosphoprotein GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 Pfam PF01979 Amidohydrolase family 46 390 2.2E-15 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 Gene3D G3DSA:2.30.40.10 17 62 1.4E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 SUPERFAMILY SSF51338 357 396 1.46E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 SUPERFAMILY SSF51338 1 50 1.46E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 Gene3D G3DSA:2.30.40.10 345 397 4.2E-7 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 Gene3D G3DSA:3.20.20.140 63 344 6.0E-90 T 06-07-2017 APT55_RS19340 675cd50b2b194d9e7a3cb3b7fd26bc68 410 SUPERFAMILY SSF51556 50 366 3.0E-74 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS25495 f3b2c90550d2e5836944c87d8bf93ac7 436 Pfam PF04932 O-Antigen ligase 221 358 1.3E-6 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS30940 6fc7d39af5f7eb38d55d78cf897ebb46 351 Gene3D G3DSA:3.40.50.2300 54 172 1.2E-34 T 06-07-2017 APT55_RS30940 6fc7d39af5f7eb38d55d78cf897ebb46 351 SUPERFAMILY SSF53822 59 257 7.74E-8 T 06-07-2017 IPR028082 Periplasmic binding protein-like I APT55_RS30940 6fc7d39af5f7eb38d55d78cf897ebb46 351 Gene3D G3DSA:3.40.50.2300 173 314 1.2E-32 T 06-07-2017 APT55_RS30940 6fc7d39af5f7eb38d55d78cf897ebb46 351 Pfam PF02608 Basic membrane protein 57 347 2.3E-41 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT55_RS29955 6f74d6ae1e52cab55148ec46868af4d3 402 Gene3D G3DSA:3.90.350.10 271 320 2.4E-4 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS29955 6f74d6ae1e52cab55148ec46868af4d3 402 SUPERFAMILY SSF53098 46 363 9.1E-17 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS29955 6f74d6ae1e52cab55148ec46868af4d3 402 Pfam PF13546 DDE superfamily endonuclease 24 254 6.2E-11 T 06-07-2017 APT55_RS11140 cd163ed9620bbb99aceadfd6943dc4e2 231 SUPERFAMILY SSF53448 5 213 9.0E-60 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS11140 cd163ed9620bbb99aceadfd6943dc4e2 231 Pfam PF00535 Glycosyl transferase family 2 8 126 9.2E-33 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS11140 cd163ed9620bbb99aceadfd6943dc4e2 231 Gene3D G3DSA:3.90.550.10 5 214 1.2E-60 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS01860 532bb60f4c2984498e0ace8fd834321f 181 Pfam PF00578 AhpC/TSA family 31 158 4.2E-29 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS01860 532bb60f4c2984498e0ace8fd834321f 181 SUPERFAMILY SSF52833 27 180 1.1E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS01860 532bb60f4c2984498e0ace8fd834321f 181 Gene3D G3DSA:3.40.30.10 25 180 9.6E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 PIRSF PIRSF007398 1 695 6.7E-132 T 06-07-2017 IPR011189 Uncharacterised conserved protein, caspase-like APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 SUPERFAMILY SSF52129 21 170 9.94E-8 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 SUPERFAMILY SSF52129 221 293 9.94E-8 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 Pfam PF14326 Domain of unknown function (DUF4384) 550 630 3.0E-8 T 06-07-2017 IPR025493 Domain of unknown function DUF4384 APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 Gene3D G3DSA:3.40.50.1460 33 298 1.1E-32 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS04375 769211be782b7460303c8141ea1c3b8f 695 Pfam PF00656 Caspase domain 35 290 5.2E-23 T 06-07-2017 APT55_RS23400 3a2ebce142ab357f031c9ee94c14d338 236 Gene3D G3DSA:1.20.1260.10 70 232 7.7E-51 T 06-07-2017 IPR012347 Ferritin-related APT55_RS23400 3a2ebce142ab357f031c9ee94c14d338 236 Pfam PF03713 Domain of unknown function (DUF305) 80 229 4.9E-45 T 06-07-2017 IPR005183 Domain of unknown function DUF305 APT55_RS04995 a349b1c6786b85245e4c840deb17c2a5 133 Gene3D G3DSA:3.10.129.10 3 132 3.1E-40 T 06-07-2017 IPR029069 HotDog domain APT55_RS04995 a349b1c6786b85245e4c840deb17c2a5 133 Hamap MF_02101 1,4-dihydroxy-2-naphthoyl-CoA hydrolase. 3 133 30.663 T 06-07-2017 IPR022829 1,4-dihydroxy-2-naphthoyl-CoA hydrolase GO:0016790 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 APT55_RS04995 a349b1c6786b85245e4c840deb17c2a5 133 Pfam PF03061 Thioesterase superfamily 18 99 2.5E-8 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 APT55_RS04995 a349b1c6786b85245e4c840deb17c2a5 133 SUPERFAMILY SSF54637 2 127 1.06E-31 T 06-07-2017 IPR029069 HotDog domain APT55_RS14970 bef7f37b81a2a1f75bfd9aed50255cea 450 Gene3D G3DSA:3.90.550.10 6 258 1.5E-7 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS14970 bef7f37b81a2a1f75bfd9aed50255cea 450 SUPERFAMILY SSF53448 3 259 1.94E-19 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS26565 1bc5904b254d55c9e62fdfb53a4862f9 219 Pfam PF10646 Sporulation and spore germination 80 191 2.8E-16 T 06-07-2017 IPR019606 GerMN domain APT55_RS26565 1bc5904b254d55c9e62fdfb53a4862f9 219 SMART SM00909 109 195 3.8E-16 T 06-07-2017 IPR019606 GerMN domain APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 Gene3D G3DSA:1.20.1600.10 197 614 7.9E-84 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 SUPERFAMILY SSF56954 194 614 5.62E-87 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 PRINTS PR01217 Proline rich extensin signature 156 173 5.0E-9 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 PRINTS PR01217 Proline rich extensin signature 110 131 5.0E-9 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 PRINTS PR01217 Proline rich extensin signature 138 154 5.0E-9 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 PRINTS PR01217 Proline rich extensin signature 23 39 5.0E-9 T 06-07-2017 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 Pfam PF02321 Outer membrane efflux protein 429 613 8.5E-32 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 APT55_RS11905 1a6a286e07de023dea0e46c4707ffc65 619 Pfam PF02321 Outer membrane efflux protein 203 404 1.0E-29 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 APT55_RS24145 bc524817082627e0483f1920f8afa2a6 678 SUPERFAMILY SSF52540 121 316 2.04E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24145 bc524817082627e0483f1920f8afa2a6 678 Gene3D G3DSA:3.40.50.300 121 233 5.2E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24145 bc524817082627e0483f1920f8afa2a6 678 Pfam PF05729 NACHT domain 124 276 1.1E-11 T 06-07-2017 APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 SMART SM00271 13 72 3.1E-19 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 SUPERFAMILY SSF46565 11 79 5.5E-22 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 Gene3D G3DSA:1.10.287.110 12 78 1.7E-21 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 ProSitePatterns PS00636 Nt-dnaJ domain signature. 57 76 - T 06-07-2017 IPR018253 DnaJ domain, conserved site APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 PRINTS PR00625 DnaJ domain signature 34 49 1.0E-11 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 PRINTS PR00625 DnaJ domain signature 16 34 1.0E-11 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 PRINTS PR00625 DnaJ domain signature 52 72 1.0E-11 T 06-07-2017 IPR001623 DnaJ domain APT55_RS26160 579f0bc5c7065268194ccf2877a2ddf9 210 Pfam PF00226 DnaJ domain 14 77 1.3E-19 T 06-07-2017 IPR001623 DnaJ domain APT55_RS07855 087bf30232caaeb79f6c31f37f16e139 390 SMART SM00933 97 354 2.1E-35 T 06-07-2017 IPR018977 NurA domain APT55_RS07855 087bf30232caaeb79f6c31f37f16e139 390 Pfam PF09376 NurA domain 99 353 2.1E-29 T 06-07-2017 IPR018977 NurA domain APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 7.8E-38 T 06-07-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 SMART SM00316 4 72 5.7E-9 T 06-07-2017 IPR022967 RNA-binding domain, S1 APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 SUPERFAMILY SSF50249 2 74 3.32E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.0E-27 T 06-07-2017 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 Gene3D G3DSA:2.40.50.140 2 72 2.0E-37 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS09145 60d43d62347ea0031edd80c7940fb2ec 76 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.849 T 06-07-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT55_RS03265 0abc9ef313cc9dd699e07faa7529f870 303 Pfam PF06051 Domain of Unknown Function (DUF928) 121 298 7.3E-57 T 06-07-2017 IPR010328 Protein of unknown function DUF928 APT55_RS09610 6d82a4c9e2016eac99884b709cc7f758 373 SMART SM01236 206 311 7.3E-26 T 06-07-2017 APT55_RS09610 6d82a4c9e2016eac99884b709cc7f758 373 Gene3D G3DSA:1.20.910.10 145 358 3.9E-31 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS09610 6d82a4c9e2016eac99884b709cc7f758 373 Pfam PF14518 Iron-containing redox enzyme 184 340 1.5E-24 T 06-07-2017 IPR028201 PqqC-like protein APT55_RS15335 1e0fa935a72e293cc38ab6f92ec55de2 291 Pfam PF00950 ABC 3 transport family 19 274 3.1E-63 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APT55_RS15335 1e0fa935a72e293cc38ab6f92ec55de2 291 SUPERFAMILY SSF81345 7 272 8.89E-35 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS15335 1e0fa935a72e293cc38ab6f92ec55de2 291 Gene3D G3DSA:1.10.3470.10 56 271 2.4E-9 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 Pfam PF03130 PBS lyase HEAT-like repeat 270 296 4.9E-4 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 19 48 3.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 268 297 0.0025 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 237 266 17.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 143 173 100.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 206 235 4.2E-5 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 174 203 0.011 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 50 79 0.041 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SMART SM00567 E-Z type HEAT repeats 81 110 1000.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 SUPERFAMILY SSF48371 6 314 2.24E-44 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 Pfam PF13646 HEAT repeats 165 241 3.7E-17 T 06-07-2017 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 Pfam PF13646 HEAT repeats 8 92 9.3E-14 T 06-07-2017 APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 Gene3D G3DSA:1.25.10.10 9 157 3.1E-25 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS25450 eb86f792d1033a13fb7fde0fa186d7e1 322 Gene3D G3DSA:1.25.10.10 165 312 7.8E-37 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS24340 496d7244e487fa23c2346f2afc20dc7c 206 SUPERFAMILY SSF53167 48 152 2.36E-13 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT55_RS24340 496d7244e487fa23c2346f2afc20dc7c 206 Gene3D G3DSA:3.40.50.1580 47 180 4.7E-12 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT55_RS30530 6c733b47c0e2d39d091e4be72e7b8cb7 256 Gene3D G3DSA:3.10.50.40 126 226 1.5E-11 T 06-07-2017 APT55_RS30530 6c733b47c0e2d39d091e4be72e7b8cb7 256 SUPERFAMILY SSF54534 93 205 3.07E-18 T 06-07-2017 APT55_RS30530 6c733b47c0e2d39d091e4be72e7b8cb7 256 Pfam PF00639 PPIC-type PPIASE domain 129 194 2.0E-6 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 APT55_RS30790 eed6efabb42ae761f777c56e7aadca15 215 SUPERFAMILY SSF52540 2 213 1.33E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30790 eed6efabb42ae761f777c56e7aadca15 215 Pfam PF00005 ABC transporter 18 166 4.6E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS30790 eed6efabb42ae761f777c56e7aadca15 215 Gene3D G3DSA:3.40.50.300 1 213 4.4E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30790 eed6efabb42ae761f777c56e7aadca15 215 SMART SM00382 26 215 3.0E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS12130 a767e99de07c3e41568d6df33dab4279 215 Pfam PF02586 SOS response associated peptidase (SRAP) 1 202 7.8E-72 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) APT55_RS12130 a767e99de07c3e41568d6df33dab4279 215 SUPERFAMILY SSF143081 2 212 3.14E-80 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) APT55_RS12130 a767e99de07c3e41568d6df33dab4279 215 Gene3D G3DSA:3.90.1680.10 1 213 1.8E-77 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) APT55_RS30675 e0376d4e9d3cfc5c0fa3ea2ead777aac 253 Pfam PF01695 IstB-like ATP binding protein 54 228 6.0E-51 T 06-07-2017 IPR002611 IstB-like ATP-binding protein GO:0005524 APT55_RS30675 e0376d4e9d3cfc5c0fa3ea2ead777aac 253 SUPERFAMILY SSF52540 93 242 1.17E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30675 e0376d4e9d3cfc5c0fa3ea2ead777aac 253 PIRSF PIRSF003073 1 249 7.8E-57 T 06-07-2017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APT55_RS30675 e0376d4e9d3cfc5c0fa3ea2ead777aac 253 Pfam PF08483 IstB-like ATP binding N-terminal 23 50 8.1E-11 T 06-07-2017 IPR013690 IstB-like ATP binding N-terminal APT55_RS30675 e0376d4e9d3cfc5c0fa3ea2ead777aac 253 Gene3D G3DSA:3.40.50.300 52 226 1.4E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09475 360f4c42d5f3ecf23364719914e6e13b 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 433 556 3.6E-26 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS09475 360f4c42d5f3ecf23364719914e6e13b 643 Gene3D G3DSA:3.40.50.300 387 565 5.0E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09475 360f4c42d5f3ecf23364719914e6e13b 643 SMART SM00382 428 560 1.2E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09475 360f4c42d5f3ecf23364719914e6e13b 643 SUPERFAMILY SSF52540 387 608 1.45E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09475 360f4c42d5f3ecf23364719914e6e13b 643 Gene3D G3DSA:1.10.8.60 566 623 2.0E-4 T 06-07-2017 APT55_RS23900 968a81a293ab1c64da8f0e3371e7205e 115 ProDom PD015453 RIBOSOMAL CHLOROPLAST 30S RIBONUCLEOPROTEIN PSRP-3 PROBABLE PLASTID PLASTID-SPECIFIC YCF65-LIKE PEPTIDE 19 91 1.0E-33 T 06-07-2017 IPR006924 Ribosomal protein PSRP-3/Ycf65 GO:0003735|GO:0005840|GO:0006412 APT55_RS23900 968a81a293ab1c64da8f0e3371e7205e 115 Hamap MF_00619 Probable 30S ribosomal protein 3, chloroplastic [ycf65]. 17 114 32.064 T 06-07-2017 IPR006924 Ribosomal protein PSRP-3/Ycf65 GO:0003735|GO:0005840|GO:0006412 APT55_RS23900 968a81a293ab1c64da8f0e3371e7205e 115 Pfam PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) 46 93 3.9E-29 T 06-07-2017 IPR006924 Ribosomal protein PSRP-3/Ycf65 GO:0003735|GO:0005840|GO:0006412 APT55_RS00085 6eae29cfacedab89692ac2548c55f873 85 Pfam PF12095 Protein of unknown function (DUF3571) 1 84 2.9E-33 T 06-07-2017 IPR021954 Protein CHLORORESPIRATORY REDUCTION 7 APT55_RS01770 df6ff3dc56b7b1123b487b519079743b 179 SUPERFAMILY SSF51161 19 164 5.68E-43 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS01770 df6ff3dc56b7b1123b487b519079743b 179 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 99 127 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT55_RS01770 df6ff3dc56b7b1123b487b519079743b 179 Gene3D G3DSA:2.160.10.10 19 163 7.9E-43 T 06-07-2017 APT55_RS01770 df6ff3dc56b7b1123b487b519079743b 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 19 46 2.9E-4 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS01770 df6ff3dc56b7b1123b487b519079743b 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 125 1.0E-8 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS08855 a79d569cefeaa082087387e26493c152 684 Gene3D G3DSA:3.40.50.300 74 220 6.0E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08855 a79d569cefeaa082087387e26493c152 684 SMART SM00382 85 227 1.5E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08855 a79d569cefeaa082087387e26493c152 684 Pfam PF05729 NACHT domain 87 241 4.4E-11 T 06-07-2017 APT55_RS08855 a79d569cefeaa082087387e26493c152 684 SUPERFAMILY SSF52540 69 220 2.42E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25460 53d8454604498f0eafb06b83ae67929e 356 Pfam PF03601 Conserved hypothetical protein 698 42 336 2.7E-87 T 06-07-2017 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 APT55_RS26610 1c64b58544958e178a92cc71ca3defa3 610 SUPERFAMILY SSF51126 235 405 8.47E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS26610 1c64b58544958e178a92cc71ca3defa3 610 SUPERFAMILY SSF51126 14 213 1.82E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS13970 54f918f9fd3310165d174212f2a61a03 313 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 110 305 3.2E-45 T 06-07-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APT55_RS31365 ea99e9d97991eb3be5eda43b51f8e9b9 199 Pfam PF05685 Putative restriction endonuclease 23 158 3.2E-9 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS31365 ea99e9d97991eb3be5eda43b51f8e9b9 199 SUPERFAMILY SSF52980 22 169 8.58E-6 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS00465 d230d5310ae4c9ac87ab6e29c93dd22f 77 Pfam PF03840 Preprotein translocase SecG subunit 6 71 2.3E-16 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT55_RS00465 d230d5310ae4c9ac87ab6e29c93dd22f 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 6 72 2.4E-17 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT55_RS17715 8f021e7520fa47539dda8a697c3ebcc8 386 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 8 382 4.2E-109 T 06-07-2017 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type APT55_RS17715 8f021e7520fa47539dda8a697c3ebcc8 386 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 369 7.2E-56 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS28020 35273111f944f1c4486b8f62ce133eca 249 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 153 209 1.3E-9 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 APT55_RS28020 35273111f944f1c4486b8f62ce133eca 249 Gene3D G3DSA:3.40.50.1000 103 248 1.1E-31 T 06-07-2017 IPR023214 HAD-like domain APT55_RS28020 35273111f944f1c4486b8f62ce133eca 249 Gene3D G3DSA:3.40.50.1000 3 21 1.1E-31 T 06-07-2017 IPR023214 HAD-like domain APT55_RS28020 35273111f944f1c4486b8f62ce133eca 249 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 209 1.5E-15 T 06-07-2017 IPR023214 HAD-like domain APT55_RS28020 35273111f944f1c4486b8f62ce133eca 249 SUPERFAMILY SSF56784 7 249 2.71E-35 T 06-07-2017 IPR023214 HAD-like domain APT55_RS11930 25f9a6a1be00cd2127205f0d818bbb37 230 Gene3D G3DSA:3.40.50.1110 18 221 5.2E-46 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS11930 25f9a6a1be00cd2127205f0d818bbb37 230 SUPERFAMILY SSF52266 19 220 4.0E-43 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS11930 25f9a6a1be00cd2127205f0d818bbb37 230 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 23 213 3.5E-22 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27745 b19bb1fe1563631eeb211ce13086c92d 281 Pfam PF01061 ABC-2 type transporter 33 240 6.4E-23 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 SUPERFAMILY SSF51735 4 245 1.35E-92 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 1.0E-70 T 06-07-2017 APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.2E-52 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.9E-17 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.9E-17 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.9E-17 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 244 1.0E-100 T 06-07-2017 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 1.4E-6 T 06-07-2017 APT55_RS00150 65980d23b411eb13b4e92191cd0cc63b 246 Gene3D G3DSA:3.40.50.720 2 245 1.7E-97 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06890 634cf7102e10aadd9c51c176f9d0c7bc 129 Gene3D G3DSA:1.10.10.10 5 71 1.0E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06890 634cf7102e10aadd9c51c176f9d0c7bc 129 SUPERFAMILY SSF46785 5 122 2.51E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06890 634cf7102e10aadd9c51c176f9d0c7bc 129 Pfam PF01475 Ferric uptake regulator family 6 117 7.2E-23 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT55_RS31715 e6fe82a7a840c5a74f1d7348eb338a05 166 SUPERFAMILY SSF46955 6 82 2.97E-7 T 06-07-2017 IPR009061 Putative DNA-binding domain APT55_RS31715 e6fe82a7a840c5a74f1d7348eb338a05 166 Pfam PF13411 MerR HTH family regulatory protein 9 73 2.7E-7 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT55_RS31715 e6fe82a7a840c5a74f1d7348eb338a05 166 Gene3D G3DSA:1.10.1660.10 114 137 3.1E-9 T 06-07-2017 APT55_RS31715 e6fe82a7a840c5a74f1d7348eb338a05 166 Gene3D G3DSA:1.10.1660.10 8 82 3.1E-9 T 06-07-2017 APT55_RS04000 f900e7fda22d857f4986914654e6be0b 126 Gene3D G3DSA:1.10.10.10 26 115 2.2E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04000 f900e7fda22d857f4986914654e6be0b 126 Pfam PF03551 Transcriptional regulator PadR-like family 33 102 3.9E-14 T 06-07-2017 IPR005149 Transcription regulator PadR, N-terminal APT55_RS04000 f900e7fda22d857f4986914654e6be0b 126 SUPERFAMILY SSF46785 16 118 1.23E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS11695 ec544b8241c5c6dca87d639caa8730cb 121 SUPERFAMILY SSF89360 1 99 3.14E-27 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS11695 ec544b8241c5c6dca87d639caa8730cb 121 Gene3D G3DSA:2.60.300.12 2 99 6.9E-30 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS11695 ec544b8241c5c6dca87d639caa8730cb 121 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 105 2.8E-24 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS11695 ec544b8241c5c6dca87d639caa8730cb 121 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 06-07-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site APT55_RS11695 ec544b8241c5c6dca87d639caa8730cb 121 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 109 4.1E-38 T 06-07-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 APT55_RS26400 dea5ef678bd53d10600d70831716cb7b 493 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 22 273 8.4E-37 T 06-07-2017 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 APT55_RS26400 dea5ef678bd53d10600d70831716cb7b 493 Pfam PF16192 C-terminal four TMM region of protein-O-mannosyltransferase 279 492 3.4E-42 T 06-07-2017 IPR032421 Protein O-mannosyl-transferase, C-terminal four TM domain KEGG: 00500+2.4.1.10|KEGG: 00514+2.4.1.109|MetaCyc: PWY-822|Reactome: R-HSA-5173105 APT55_RS17760 2c31cba540020b75431f7747c9df80cd 192 Pfam PF05685 Putative restriction endonuclease 17 187 4.8E-40 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS17760 2c31cba540020b75431f7747c9df80cd 192 Gene3D G3DSA:3.90.1570.10 6 191 1.2E-73 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS17760 2c31cba540020b75431f7747c9df80cd 192 SUPERFAMILY SSF52980 7 191 1.23E-56 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS10610 c7bd3210675e3419e2c00b8045d83893 370 Pfam PF00534 Glycosyl transferases group 1 196 342 5.3E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10610 c7bd3210675e3419e2c00b8045d83893 370 SUPERFAMILY SSF53756 46 367 1.99E-43 T 06-07-2017 APT55_RS10610 c7bd3210675e3419e2c00b8045d83893 370 Gene3D G3DSA:3.40.50.2000 190 334 4.2E-15 T 06-07-2017 APT55_RS21555 1ac6704ff7bf76561f286c71ded06871 549 Pfam PF05552 Conserved TM helix 125 173 1.6E-12 T 06-07-2017 IPR008910 Conserved TM helix APT55_RS21555 1ac6704ff7bf76561f286c71ded06871 549 Pfam PF05552 Conserved TM helix 317 364 2.2E-12 T 06-07-2017 IPR008910 Conserved TM helix APT55_RS21555 1ac6704ff7bf76561f286c71ded06871 549 Pfam PF05552 Conserved TM helix 221 269 1.8E-16 T 06-07-2017 IPR008910 Conserved TM helix APT55_RS16860 dd1cc849af4592df4f87dd041f8ef68a 41 Pfam PF01701 Photosystem I reaction centre subunit IX / PsaJ 1 37 4.0E-21 T 06-07-2017 IPR002615 Photosystem I PsaJ, reaction centre subunit IX GO:0009522|GO:0015979 APT55_RS16860 dd1cc849af4592df4f87dd041f8ef68a 41 SUPERFAMILY SSF81544 1 40 1.19E-16 T 06-07-2017 IPR002615 Photosystem I PsaJ, reaction centre subunit IX GO:0009522|GO:0015979 APT55_RS16860 dd1cc849af4592df4f87dd041f8ef68a 41 Gene3D G3DSA:1.20.5.510 1 40 9.7E-23 T 06-07-2017 APT55_RS16860 dd1cc849af4592df4f87dd041f8ef68a 41 ProDom PD004198 PHOTOSYSTEM I SUBUNIT IX REACTION CENTER CHLOROPLAST MEMBRANE TRANSMEMBRANE PHOTOSYNTHESIS 1 37 1.0E-8 T 06-07-2017 IPR002615 Photosystem I PsaJ, reaction centre subunit IX GO:0009522|GO:0015979 APT55_RS16860 dd1cc849af4592df4f87dd041f8ef68a 41 Hamap MF_00522 Photosystem I reaction center subunit IX [psaJ]. 1 41 17.352 T 06-07-2017 IPR002615 Photosystem I PsaJ, reaction centre subunit IX GO:0009522|GO:0015979 APT55_RS02370 fad8543c3ee030e4718ad52fe09942c3 422 Gene3D G3DSA:3.40.50.1390 22 94 5.6E-4 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS02370 fad8543c3ee030e4718ad52fe09942c3 422 Pfam PF07508 Recombinase 145 226 1.4E-7 T 06-07-2017 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 APT55_RS02370 fad8543c3ee030e4718ad52fe09942c3 422 SUPERFAMILY SSF53041 22 118 2.88E-6 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 APT55_RS15710 1598e9d06b9e5e9499eea82294272da4 773 SUPERFAMILY SSF56935 598 710 2.09E-7 T 06-07-2017 APT55_RS15710 1598e9d06b9e5e9499eea82294272da4 773 Gene3D G3DSA:2.40.160.10 596 669 3.0E-4 T 06-07-2017 IPR023614 Porin domain APT55_RS15710 1598e9d06b9e5e9499eea82294272da4 773 SUPERFAMILY SSF56935 353 725 9.44E-6 T 06-07-2017 APT55_RS09510 faa62a03b4dcac6a363ce092c24c44ab 893 Gene3D G3DSA:1.10.10.10 21 83 1.1E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09510 faa62a03b4dcac6a363ce092c24c44ab 893 Gene3D G3DSA:2.60.40.10 229 322 7.5E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold APT55_RS11420 c8c2cb8933489cdff5a09026757dfce9 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 292 1.8E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11420 c8c2cb8933489cdff5a09026757dfce9 294 SUPERFAMILY SSF161098 29 285 1.87E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11420 c8c2cb8933489cdff5a09026757dfce9 294 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 24 292 7.1E-80 T 06-07-2017 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 APT55_RS11420 c8c2cb8933489cdff5a09026757dfce9 294 Gene3D G3DSA:1.10.3720.10 25 293 4.1E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07205 1bd9f0cce5f461513058ff23eb1bece9 189 Gene3D G3DSA:3.40.50.150 24 183 2.9E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07205 1bd9f0cce5f461513058ff23eb1bece9 189 Pfam PF08241 Methyltransferase domain 32 120 1.2E-17 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS07205 1bd9f0cce5f461513058ff23eb1bece9 189 SUPERFAMILY SSF53335 14 178 1.89E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10985 bba116df89389eb2a5daf07f9066a5d1 474 Pfam PF11850 Protein of unknown function (DUF3370) 49 471 3.4E-198 T 06-07-2017 IPR021801 Protein of unknown function DUF3370 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.4E-33 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.4E-33 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.4E-33 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 38.357 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 Pfam PF00347 Ribosomal protein L6 12 82 4.3E-19 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 Pfam PF00347 Ribosomal protein L6 91 164 5.2E-18 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 SUPERFAMILY SSF56053 1 82 3.53E-25 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 Gene3D G3DSA:3.90.930.12 83 177 1.7E-38 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 Gene3D G3DSA:3.90.930.12 2 82 4.6E-29 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 PIRSF PIRSF002162 1 177 7.9E-45 T 06-07-2017 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 06-07-2017 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 7.8E-74 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT55_RS24775 9ceff5655f981f8f7f650320bb08d23a 182 SUPERFAMILY SSF56053 83 177 5.63E-35 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 SUPERFAMILY SSF82689 446 545 6.41E-15 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 Gene3D G3DSA:2.30.30.60 395 439 4.9E-14 T 06-07-2017 APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 Gene3D G3DSA:3.30.70.100 447 535 1.0E-8 T 06-07-2017 APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 Pfam PF00924 Mechanosensitive ion channel 337 537 5.5E-53 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 SUPERFAMILY SSF50182 380 439 1.67E-13 T 06-07-2017 IPR010920 LSM domain APT55_RS27005 36c4f285e9a37c5e0ec876dde136ed9e 553 SUPERFAMILY SSF82861 294 378 5.1E-7 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 SMART SM00895 82 207 4.1E-16 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 64 1.7E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 Gene3D G3DSA:1.10.10.10 3 65 5.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 Gene3D G3DSA:1.20.120.530 75 218 8.7E-30 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 SUPERFAMILY SSF48008 78 214 1.52E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 SMART SM00345 14 72 7.8E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 4.5E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 4.5E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 SUPERFAMILY SSF46785 2 76 8.71E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10770 0b410a8436347a923f3f06e61f77f29c 223 Pfam PF07729 FCD domain 82 206 1.0E-22 T 06-07-2017 IPR011711 GntR, C-terminal APT55_RS02580 3b5a97d61fadd3b0f4982704aec9a80a 233 Pfam PF07722 Peptidase C26 5 212 7.6E-56 T 06-07-2017 IPR011697 Peptidase C26 GO:0006541|GO:0016787 APT55_RS02580 3b5a97d61fadd3b0f4982704aec9a80a 233 Gene3D G3DSA:3.40.50.880 4 233 1.9E-47 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS02580 3b5a97d61fadd3b0f4982704aec9a80a 233 SUPERFAMILY SSF52317 26 232 4.98E-41 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS12325 8639490809f9e58a7b4f41fb72ee4334 154 Pfam PF04972 BON domain 85 149 1.2E-10 T 06-07-2017 IPR007055 BON domain APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 Gene3D G3DSA:3.40.50.720 4 175 1.1E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 6 330 2.2E-136 T 06-07-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 257 5.6E-57 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 SUPERFAMILY SSF51735 4 329 1.35E-96 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 Gene3D G3DSA:3.90.25.10 176 227 1.5E-42 T 06-07-2017 APT55_RS27995 7c4447c6c398053ee9dc7483aeb18cb9 354 Gene3D G3DSA:3.90.25.10 259 329 1.5E-42 T 06-07-2017 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 SUPERFAMILY SSF53807 37 308 6.87E-75 T 06-07-2017 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 Gene3D G3DSA:3.40.50.1980 185 308 1.8E-39 T 06-07-2017 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 193 214 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 36 54 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 246 264 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 67 80 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 80 97 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00690 Adhesin family signature 273 292 1.2E-32 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 219 237 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 242 259 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 193 210 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 286 304 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 61 79 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 36 57 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 PRINTS PR00691 Adhesin B signature 135 154 8.5E-26 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 Pfam PF01297 Zinc-uptake complex component A periplasmic 39 305 1.3E-70 T 06-07-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 APT55_RS07240 c23006484b323b26a3b30c956e57fded 317 Gene3D G3DSA:3.40.50.1980 37 184 2.3E-43 T 06-07-2017 APT55_RS05450 0340ff80834536685e178615027343ae 134 Pfam PF09851 Short C-terminal domain 103 130 3.3E-8 T 06-07-2017 IPR018649 SHOCT domain APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 SMART SM00986 68 220 1.2E-38 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 SMART SM00987 68 220 1.2E-38 T 06-07-2017 APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 SUPERFAMILY SSF52141 44 229 1.18E-61 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 Gene3D G3DSA:3.40.470.10 43 229 1.7E-68 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 Pfam PF03167 Uracil DNA glycosylase superfamily 69 219 1.7E-44 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT55_RS04695 739e4003ad74a55022612432f1a4716b 233 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 54 209 2.4E-53 T 06-07-2017 IPR005273 Uracil-DNA glycosylase, family 4 domain APT55_RS01690 473a90849107b4d40adecef0fc113d5c 738 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 536 731 3.4E-34 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 APT55_RS01690 473a90849107b4d40adecef0fc113d5c 738 Pfam PF02706 Chain length determinant protein 24 167 9.9E-11 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 APT55_RS01690 473a90849107b4d40adecef0fc113d5c 738 Gene3D G3DSA:3.40.50.300 551 728 2.8E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01690 473a90849107b4d40adecef0fc113d5c 738 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 553 727 2.9E-12 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS01690 473a90849107b4d40adecef0fc113d5c 738 SUPERFAMILY SSF52540 550 731 1.58E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 06-07-2017 IPR020081 SsrA-binding protein, conserved site APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 SUPERFAMILY SSF74982 6 136 3.4E-51 T 06-07-2017 IPR023620 Small protein B APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 Gene3D G3DSA:2.40.280.10 10 131 5.6E-51 T 06-07-2017 IPR023620 Small protein B APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 154 6.4E-57 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 Pfam PF01668 SmpB protein 11 74 3.8E-28 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 136 8.0E-55 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 APT55_RS21050 c0758f8bfe749458602cb5d7cd1ced62 156 Hamap MF_00023 SsrA-binding protein [smpB]. 1 156 72.662 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 APT55_RS13845 949f63adbbd3bc86a89ae82bcadf9039 240 SUPERFAMILY SSF56349 70 224 1.18E-16 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS13845 949f63adbbd3bc86a89ae82bcadf9039 240 Gene3D G3DSA:1.10.443.10 69 228 4.4E-12 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS10045 b6a2d71d98c2439545b452dfc7871ca2 220 Gene3D G3DSA:1.25.40.10 90 207 1.1E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10045 b6a2d71d98c2439545b452dfc7871ca2 220 Pfam PF06041 Bacterial protein of unknown function (DUF924) 10 206 1.6E-37 T 06-07-2017 IPR010323 Protein of unknown function DUF924 APT55_RS10045 b6a2d71d98c2439545b452dfc7871ca2 220 SUPERFAMILY SSF48452 4 207 9.86E-37 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS10045 b6a2d71d98c2439545b452dfc7871ca2 220 Gene3D G3DSA:1.20.58.320 5 89 1.9E-11 T 06-07-2017 APT55_RS10620 b5f4aaa7cfde336a52ee38cd55504d5a 89 Gene3D G3DSA:3.40.50.150 11 63 2.1E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10620 b5f4aaa7cfde336a52ee38cd55504d5a 89 SUPERFAMILY SSF53335 10 63 2.09E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS11275 c626d7f86abb600b62a5b8c0926c8d92 78 SMART SM01093 10 78 1.6E-27 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS11275 c626d7f86abb600b62a5b8c0926c8d92 78 Pfam PF02672 CP12 domain 10 77 1.2E-26 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS21250 2be1732b6fb5c616725c6b5f2858eb95 279 Gene3D G3DSA:3.40.50.150 16 278 3.5E-78 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS21250 2be1732b6fb5c616725c6b5f2858eb95 279 Pfam PF08241 Methyltransferase domain 67 163 4.1E-27 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS21250 2be1732b6fb5c616725c6b5f2858eb95 279 SUPERFAMILY SSF53335 7 278 1.01E-63 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS10560 2a7ec40456c40ab803c82b44996cb9b4 141 SUPERFAMILY SSF54427 9 126 2.56E-8 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS10560 2a7ec40456c40ab803c82b44996cb9b4 141 Pfam PF10184 Uncharacterized conserved protein (DUF2358) 9 120 5.5E-38 T 06-07-2017 IPR018790 Protein of unknown function DUF2358 APT55_RS12835 df95323b21f871182a3c9007dadffd27 278 TIGRFAM TIGR03763 cyanoexo_CrtA: cyanoexosortase A 8 263 4.2E-72 T 06-07-2017 IPR022505 Exosortase, cyanobacteria APT55_RS12835 df95323b21f871182a3c9007dadffd27 278 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 17 262 2.7E-39 T 06-07-2017 IPR019127 Exosortase EpsH-related APT55_RS12835 df95323b21f871182a3c9007dadffd27 278 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 169 263 1.3E-15 T 06-07-2017 IPR026392 Exosortase/Archaeosortase domain APT55_RS18285 67ffceb1bee19058595c559ab613bdbe 192 Pfam PF01300 Telomere recombination 19 188 8.4E-37 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 APT55_RS18285 67ffceb1bee19058595c559ab613bdbe 192 SUPERFAMILY SSF55821 17 190 1.31E-40 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS18285 67ffceb1bee19058595c559ab613bdbe 192 Gene3D G3DSA:3.90.870.10 7 191 8.9E-45 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain APT55_RS17295 2c6a6f316e726ab9e49917e35ecc3d84 448 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 344 417 1.1E-6 T 06-07-2017 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain APT55_RS17295 2c6a6f316e726ab9e49917e35ecc3d84 448 Pfam PF13440 Polysaccharide biosynthesis protein 49 343 2.0E-15 T 06-07-2017 APT55_RS11655 716a93a80e32aad423ad9227c6c117ff 99 Pfam PF06967 Mo-dependent nitrogenase C-terminus 18 97 5.2E-36 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS06030 ddd7f4bc6335f075abd37d98903bb0c1 78 Pfam PF01381 Helix-turn-helix 12 64 8.4E-11 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06030 ddd7f4bc6335f075abd37d98903bb0c1 78 SUPERFAMILY SSF47413 12 70 5.36E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06030 ddd7f4bc6335f075abd37d98903bb0c1 78 Gene3D G3DSA:1.10.260.40 12 65 1.2E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06030 ddd7f4bc6335f075abd37d98903bb0c1 78 SMART SM00530 12 65 1.7E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Pfam PF01266 FAD dependent oxidoreductase 3 346 2.0E-51 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Gene3D G3DSA:3.30.9.10 88 152 5.5E-8 T 06-07-2017 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Gene3D G3DSA:3.30.9.10 220 304 5.5E-8 T 06-07-2017 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 SUPERFAMILY SSF54373 219 309 2.06E-14 T 06-07-2017 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 SUPERFAMILY SSF51905 1 229 1.81E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 SUPERFAMILY SSF51905 313 352 1.81E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Gene3D G3DSA:3.50.50.60 313 354 3.7E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Gene3D G3DSA:3.50.50.60 153 219 3.7E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00810 a14e477a65320c131df1cf807bd1fa9c 358 Gene3D G3DSA:3.50.50.60 1 87 3.7E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 Gene3D G3DSA:1.10.510.10 107 295 4.0E-35 T 06-07-2017 APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 43 67 - T 06-07-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 Gene3D G3DSA:3.30.200.20 34 106 2.4E-19 T 06-07-2017 APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 SUPERFAMILY SSF56112 33 298 1.07E-57 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 162 174 - T 06-07-2017 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 APT55_RS13370 20eb7a4070adb7188877b27be45bffa1 389 Pfam PF00069 Protein kinase domain 37 292 9.1E-39 T 06-07-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 APT55_RS11445 0a8726450c883950ab7215b8bc4949b4 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 133 3.6E-25 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 SUPERFAMILY SSF51351 2 240 9.16E-87 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 ProSitePatterns PS00171 Triosephosphate isomerase active site. 163 173 - T 06-07-2017 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 Gene3D G3DSA:3.20.20.70 2 240 2.9E-96 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 Pfam PF00121 Triosephosphate isomerase 5 238 1.4E-85 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 231 5.0E-53 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS03785 6e4417b48240bcdeeb1a739a09042ddb 241 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 241 39.284 T 06-07-2017 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT55_RS17170 82a0ccfe21b0fdc7affe5126b6737cb7 28 TIGRFAM TIGR04155 cyano_PEP: PEP-CTERM protein sorting domain, cyanobacterial subclass 1 23 2.5E-8 T 06-07-2017 IPR026374 PEP-CTERM protein sorting domain, cyanobacterial subclass APT55_RS11500 8bc88d543c5bece3fa00cd25e1910ad7 100 Gene3D G3DSA:3.30.70.330 2 95 1.0E-28 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS11500 8bc88d543c5bece3fa00cd25e1910ad7 100 SUPERFAMILY SSF54928 2 99 4.03E-30 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 APT55_RS11500 8bc88d543c5bece3fa00cd25e1910ad7 100 SMART SM00360 2 75 5.1E-23 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS11500 8bc88d543c5bece3fa00cd25e1910ad7 100 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 5.0E-21 T 06-07-2017 IPR000504 RNA recognition motif domain GO:0003676 APT55_RS04785 9ba8a4746a8f43141a65a906f8b21024 312 SUPERFAMILY SSF141571 205 285 5.49E-21 T 06-07-2017 APT55_RS04785 9ba8a4746a8f43141a65a906f8b21024 312 Pfam PF00805 Pentapeptide repeats (8 copies) 244 282 6.2E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 PIRSF PIRSF036915 1 382 2.2E-159 T 06-07-2017 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 TIGRFAM TIGR00876 tal_mycobact: transaldolase 15 370 3.1E-101 T 06-07-2017 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 SUPERFAMILY SSF51569 5 376 4.03E-78 T 06-07-2017 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 ProSitePatterns PS00958 Transaldolase active site. 139 156 - T 06-07-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 Hamap MF_00493 Transaldolase [tal]. 1 382 139.116 T 06-07-2017 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 Gene3D G3DSA:3.20.20.70 6 372 8.1E-116 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS20215 f8068232b27ac541b0e2c71f011edb19 382 Pfam PF00923 Transaldolase 17 371 2.8E-83 T 06-07-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 APT55_RS30990 189dc71bd5e6522fd615270ce34e689f 348 Pfam PF00487 Fatty acid desaturase 59 308 5.8E-32 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 SUPERFAMILY SSF47090 134 197 1.7E-17 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Pfam PF01471 Putative peptidoglycan binding domain 141 197 1.3E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Pfam PF01471 Putative peptidoglycan binding domain 60 116 7.4E-17 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Pfam PF01471 Putative peptidoglycan binding domain 219 273 3.4E-17 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Gene3D G3DSA:1.10.101.10 133 198 2.0E-19 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Gene3D G3DSA:1.10.101.10 52 116 2.1E-21 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 Gene3D G3DSA:1.10.101.10 209 281 2.6E-21 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 SUPERFAMILY SSF47090 50 117 3.14E-19 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS26470 f189622ccbd191630c5a5f89a4878f49 353 SUPERFAMILY SSF47090 209 278 1.2E-18 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS06560 4f1c190d1ea59cd32720c101669da55c 186 SUPERFAMILY SSF53335 28 151 6.97E-18 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06560 4f1c190d1ea59cd32720c101669da55c 186 Gene3D G3DSA:3.40.50.150 27 162 4.3E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06560 4f1c190d1ea59cd32720c101669da55c 186 Pfam PF08241 Methyltransferase domain 28 84 1.5E-9 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS22510 7a7999b78764a0bff8ce06bb20398a44 162 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 68 1.2E-11 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS22510 7a7999b78764a0bff8ce06bb20398a44 162 SUPERFAMILY SSF53254 1 145 3.4E-22 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS22510 7a7999b78764a0bff8ce06bb20398a44 162 Gene3D G3DSA:3.40.50.1240 1 159 2.1E-31 T 06-07-2017 IPR029033 Histidine phosphatase superfamily APT55_RS22510 7a7999b78764a0bff8ce06bb20398a44 162 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 158 2.1E-34 T 06-07-2017 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 APT55_RS22510 7a7999b78764a0bff8ce06bb20398a44 162 SMART SM00855 2 115 1.2E-6 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 APT55_RS10895 16b781ff743e12f7f543e5ccfa830220 296 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 45 279 2.8E-14 T 06-07-2017 IPR001087 GDSL lipase/esterase GO:0016788 APT55_RS10895 16b781ff743e12f7f543e5ccfa830220 296 SUPERFAMILY SSF52266 43 285 2.11E-20 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS10895 16b781ff743e12f7f543e5ccfa830220 296 Gene3D G3DSA:3.40.50.1110 35 287 1.8E-65 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS14145 344e41e9e9063e081aaaa19139772b9c 637 SUPERFAMILY SSF51735 413 503 1.38E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14145 344e41e9e9063e081aaaa19139772b9c 637 Gene3D G3DSA:3.40.50.720 413 506 6.5E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14145 344e41e9e9063e081aaaa19139772b9c 637 Pfam PF00999 Sodium/hydrogen exchanger family 12 404 2.2E-48 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 SUPERFAMILY SSF52540 596 692 1.24E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 SUPERFAMILY SSF52540 307 529 1.24E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 Pfam PF00271 Helicase conserved C-terminal domain 597 681 1.5E-8 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 Gene3D G3DSA:3.40.50.300 551 725 1.0E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 Pfam PF00270 DEAD/DEAH box helicase 288 448 2.8E-13 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 Hamap MF_00983 Probable primosomal protein N' [priA]. 24 813 23.81 T 06-07-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 Gene3D G3DSA:3.40.50.300 278 459 5.2E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 SMART SM00487 283 478 2.8E-24 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 TIGRFAM TIGR00595 priA: primosomal protein N' 308 811 6.0E-198 T 06-07-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APT55_RS13990 4602d8a2a3fcdaf3e6d5630b68d3655f 814 SMART SM00490 585 682 7.4E-9 T 06-07-2017 IPR001650 Helicase, C-terminal APT55_RS18070 2a3ea23bc9af7ad0603910fbacb9f228 145 Gene3D G3DSA:2.60.120.10 32 114 2.8E-6 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS18070 2a3ea23bc9af7ad0603910fbacb9f228 145 SUPERFAMILY SSF51182 17 132 6.07E-16 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 SUPERFAMILY SSF52540 6 253 3.86E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 Pfam PF08402 TOBE domain 282 347 1.1E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 Gene3D G3DSA:3.40.50.300 5 246 1.6E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 SMART SM00382 31 223 1.2E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 Pfam PF00005 ABC transporter 23 173 1.2E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS18545 9a11f3388357a8ef1c9e5e680fd8d60d 364 SUPERFAMILY SSF50331 250 352 4.17E-7 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 SUPERFAMILY SSF52743 20 299 9.43E-73 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 Pfam PF00082 Subtilase family 40 286 6.3E-33 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 PRINTS PR00723 Subtilisin serine protease family (S8) signature 40 59 3.8E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 PRINTS PR00723 Subtilisin serine protease family (S8) signature 83 96 3.8E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 PRINTS PR00723 Subtilisin serine protease family (S8) signature 236 252 3.8E-16 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related APT55_RS28630 e531e55c6ad8f1e4b1469e2ee2e4c4f4 399 Gene3D G3DSA:3.40.50.200 15 298 1.3E-71 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS15085 d9e236d956b84917e122b0f3a08a5375 142 Pfam PF06146 Phosphate-starvation-inducible E 61 128 1.5E-21 T 06-07-2017 IPR020948 Phosphate-starvation-induced PsiE-like APT55_RS01755 cabfd00c7eebf8d6ed5d25ae7644d83f 449 SUPERFAMILY SSF52540 233 448 6.0E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01755 cabfd00c7eebf8d6ed5d25ae7644d83f 449 Gene3D G3DSA:3.40.50.300 235 395 5.2E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01755 cabfd00c7eebf8d6ed5d25ae7644d83f 449 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 276 331 5.8E-5 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 APT55_RS01755 cabfd00c7eebf8d6ed5d25ae7644d83f 449 SMART SM00382 271 383 1.6E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01755 cabfd00c7eebf8d6ed5d25ae7644d83f 449 Gene3D G3DSA:1.10.8.60 400 447 5.5E-4 T 06-07-2017 APT55_RS23700 d1f08da0bda618f47a2425d1fcfe5e24 449 Gene3D G3DSA:3.30.1330.100 367 380 1.3E-4 T 06-07-2017 APT55_RS23700 d1f08da0bda618f47a2425d1fcfe5e24 449 Gene3D G3DSA:3.30.1330.100 230 275 1.3E-4 T 06-07-2017 APT55_RS23700 d1f08da0bda618f47a2425d1fcfe5e24 449 SUPERFAMILY SSF144010 230 437 6.41E-31 T 06-07-2017 APT55_RS04900 7de24ef650c8807791b9a62cf008c24f 530 Pfam PF00082 Subtilase family 79 339 2.2E-18 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS04900 7de24ef650c8807791b9a62cf008c24f 530 SUPERFAMILY SSF49785 401 524 1.02E-14 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS04900 7de24ef650c8807791b9a62cf008c24f 530 SUPERFAMILY SSF52743 32 332 3.8E-32 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS04900 7de24ef650c8807791b9a62cf008c24f 530 SUPERFAMILY SSF52743 364 391 3.8E-32 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS04900 7de24ef650c8807791b9a62cf008c24f 530 Gene3D G3DSA:3.40.50.200 39 379 2.4E-29 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT55_RS27800 e526e1598cfaaa70f187650399e06d8d 542 Pfam PF13524 Glycosyl transferases group 1 213 296 2.0E-19 T 06-07-2017 APT55_RS21230 9b6a6ca56ba934775287cd0597b59eb1 204 Pfam PF09335 SNARE associated Golgi protein 32 149 2.8E-28 T 06-07-2017 IPR032816 SNARE associated Golgi protein APT55_RS00520 21f52731c33a87c22e039c755c174a7c 97 Gene3D G3DSA:3.20.180.10 12 94 1.1E-20 T 06-07-2017 IPR019595 Domain of unknown function DUF2470 APT55_RS00520 21f52731c33a87c22e039c755c174a7c 97 Pfam PF10615 Protein of unknown function (DUF2470) 12 89 2.0E-24 T 06-07-2017 IPR019595 Domain of unknown function DUF2470 APT55_RS00520 21f52731c33a87c22e039c755c174a7c 97 SUPERFAMILY SSF50475 11 94 9.02E-11 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 Gene3D G3DSA:3.90.550.10 181 414 8.6E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 Pfam PF13641 Glycosyltransferase like family 2 181 405 7.3E-27 T 06-07-2017 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 Pfam PF07238 PilZ domain 614 708 3.5E-6 T 06-07-2017 IPR009875 PilZ domain GO:0035438 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 SUPERFAMILY SSF53448 183 457 5.22E-42 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 499 518 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 582 603 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 269 293 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 190 209 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 430 456 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS28350 57fe2e6b619ab1b9323812f7052e96d4 756 PRINTS PR01439 Cellulose synthase subunit A signature 102 122 1.4E-14 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 APT55_RS17620 cdaf737af87bedaa663e7ad6d7a866d3 109 SUPERFAMILY SSF54292 6 94 2.23E-20 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS17620 cdaf737af87bedaa663e7ad6d7a866d3 109 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 87 5.1E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS17620 cdaf737af87bedaa663e7ad6d7a866d3 109 Gene3D G3DSA:3.10.20.30 6 93 4.1E-19 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS02060 76f2436be6ba797a225bff01671c691a 274 Pfam PF11103 Protein of unknown function (DUF2887) 3 204 2.8E-69 T 06-07-2017 IPR022573 Protein of unknown function DUF2887 APT55_RS02060 76f2436be6ba797a225bff01671c691a 274 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 2 270 2.9E-26 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 Pfam PF00809 Pterin binding enzyme 20 259 2.3E-89 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 53 66 - T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 SUPERFAMILY SSF51717 6 276 7.06E-104 T 06-07-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 19 34 - T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 Gene3D G3DSA:3.20.20.20 3 276 2.5E-114 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT55_RS18990 86dfcbe3e4550be1585e056c4157cfd5 276 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 19 273 6.9E-101 T 06-07-2017 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 APT55_RS20840 ecc5631dfe13b66552ff04e7a267a9ca 131 TIGRFAM TIGR03044 PS_II_psb27: photosystem II protein Psb27 3 130 5.1E-51 T 06-07-2017 IPR017488 Photosystem II Psb27, bacterial APT55_RS20840 ecc5631dfe13b66552ff04e7a267a9ca 131 Hamap MF_01481 Photosystem II lipoprotein Psb27 [psb27]. 3 127 24.088 T 06-07-2017 IPR025585 Photosystem II Pbs27 GO:0010207 APT55_RS20840 ecc5631dfe13b66552ff04e7a267a9ca 131 Pfam PF13326 Photosystem II Pbs27 28 127 3.0E-21 T 06-07-2017 IPR025585 Photosystem II Pbs27 GO:0010207 APT55_RS10890 7365690060acfd1c813f2e1b328f0703 206 Gene3D G3DSA:3.40.50.1010 36 189 1.3E-46 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10890 7365690060acfd1c813f2e1b328f0703 206 Pfam PF01936 NYN domain 39 186 6.8E-36 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 Pfam PF00487 Fatty acid desaturase 36 248 5.4E-15 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 97 126 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 37 59 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 13 33 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 223 237 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 180 201 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS21360 ef605df4af5cf12b59aa4c7d4e9b77ce 272 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 80 5.9E-36 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS17560 6dbfcba22e914925fcfd5fd72f683a6e 240 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 10 233 1.7E-80 T 06-07-2017 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 APT55_RS17560 6dbfcba22e914925fcfd5fd72f683a6e 240 SUPERFAMILY SSF100950 5 233 4.13E-68 T 06-07-2017 APT55_RS17560 6dbfcba22e914925fcfd5fd72f683a6e 240 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 12 228 2.6E-71 T 06-07-2017 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 APT55_RS17560 6dbfcba22e914925fcfd5fd72f683a6e 240 Gene3D G3DSA:3.40.50.1360 2 232 3.1E-72 T 06-07-2017 APT55_RS31090 b1e93bdd0bbd7cfc79f44f002f42b55c 396 Gene3D G3DSA:3.90.1530.10 80 177 5.7E-15 T 06-07-2017 APT55_RS31090 b1e93bdd0bbd7cfc79f44f002f42b55c 396 SUPERFAMILY SSF110849 83 191 2.09E-13 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS31090 b1e93bdd0bbd7cfc79f44f002f42b55c 396 SMART SM00470 84 170 4.5E-7 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS31090 b1e93bdd0bbd7cfc79f44f002f42b55c 396 Pfam PF02195 ParB-like nuclease domain 87 156 8.3E-9 T 06-07-2017 IPR003115 ParB/Sulfiredoxin APT55_RS23130 c40c0f31ee7bac09d08f77f17535bc65 422 Gene3D G3DSA:3.50.50.60 273 343 1.7E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS23130 c40c0f31ee7bac09d08f77f17535bc65 422 Gene3D G3DSA:3.50.50.60 18 131 1.7E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS23130 c40c0f31ee7bac09d08f77f17535bc65 422 SUPERFAMILY SSF51905 130 272 1.89E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS23130 c40c0f31ee7bac09d08f77f17535bc65 422 SUPERFAMILY SSF51905 18 165 3.76E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS23130 c40c0f31ee7bac09d08f77f17535bc65 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 19 138 7.9E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS05200 57c06a513363eea8735d37cbc981af59 665 Gene3D G3DSA:1.10.760.10 636 661 1.2E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS05200 57c06a513363eea8735d37cbc981af59 665 Gene3D G3DSA:1.10.760.10 421 571 1.2E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS05200 57c06a513363eea8735d37cbc981af59 665 SUPERFAMILY SSF46626 506 569 1.6E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS05200 57c06a513363eea8735d37cbc981af59 665 SUPERFAMILY SSF46626 430 470 1.6E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS05200 57c06a513363eea8735d37cbc981af59 665 SUPERFAMILY SSF46626 634 660 1.6E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 SUPERFAMILY SSF50346 93 157 2.3E-9 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 Gene3D G3DSA:2.30.30.240 2 69 9.4E-8 T 06-07-2017 APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 Gene3D G3DSA:2.30.30.240 93 158 3.3E-8 T 06-07-2017 APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 Pfam PF05239 PRC-barrel domain 93 157 1.6E-7 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 Pfam PF05239 PRC-barrel domain 3 71 1.2E-7 T 06-07-2017 IPR027275 PRC-barrel domain APT55_RS09315 a2c11be4ca26c39db61254574b3bb24b 540 SUPERFAMILY SSF50346 1 70 2.39E-6 T 06-07-2017 IPR011033 PRC-barrel-like APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 Gene3D G3DSA:2.30.42.10 111 198 6.8E-17 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 SMART SM00228 115 188 1.1E-7 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 136 360 2.0E-56 T 06-07-2017 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 Pfam PF13180 PDZ domain 123 195 8.6E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 SUPERFAMILY SSF50156 94 197 9.33E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 APT55_RS09540 0592ee34cfefd6865868a48c56ba88d3 362 Pfam PF02163 Peptidase family M50 6 347 1.9E-66 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 Pfam PF13604 AAA domain 928 1133 1.3E-13 T 06-07-2017 APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 Pfam PF13087 AAA domain 1236 1348 3.2E-18 T 06-07-2017 APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 Gene3D G3DSA:3.40.50.300 922 1021 1.2E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 Gene3D G3DSA:3.40.50.300 1064 1134 1.2E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 SUPERFAMILY SSF52540 928 1007 6.25E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 SUPERFAMILY SSF52540 1069 1130 6.25E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 SUPERFAMILY SSF52540 1245 1370 6.25E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09080 05e00278d473808f9ceec5e6f81a8784 1406 SUPERFAMILY SSF52540 1171 1204 6.25E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24965 d01e68b217c21c134179527c0c555fd0 688 Pfam PF14326 Domain of unknown function (DUF4384) 548 624 8.7E-7 T 06-07-2017 IPR025493 Domain of unknown function DUF4384 APT55_RS24965 d01e68b217c21c134179527c0c555fd0 688 SUPERFAMILY SSF52129 13 194 2.25E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS24965 d01e68b217c21c134179527c0c555fd0 688 SUPERFAMILY SSF52129 235 297 2.25E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS24965 d01e68b217c21c134179527c0c555fd0 688 Pfam PF00656 Caspase domain 32 305 1.8E-23 T 06-07-2017 APT55_RS24965 d01e68b217c21c134179527c0c555fd0 688 Gene3D G3DSA:3.40.50.1460 31 310 3.0E-40 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS27965 8696a12afdd41ec10afe5ab7333163e8 198 SUPERFAMILY SSF51161 22 189 3.74E-40 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS27965 8696a12afdd41ec10afe5ab7333163e8 198 Gene3D G3DSA:2.160.10.10 25 189 6.0E-39 T 06-07-2017 APT55_RS27965 8696a12afdd41ec10afe5ab7333163e8 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 141 173 3.2E-7 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 Hamap MF_00528 Septum formation protein Maf [maf]. 4 213 28.942 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 PIRSF PIRSF006305 1 215 3.9E-48 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 206 3.2E-52 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 Gene3D G3DSA:3.90.950.10 3 212 1.3E-58 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 Pfam PF02545 Maf-like protein 5 208 1.7E-46 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 APT55_RS00565 5848b5bc5608c3630c64e2b23c4b39c3 218 SUPERFAMILY SSF52972 2 208 3.2E-52 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 301 7.0E-69 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 SUPERFAMILY SSF53686 2 321 2.23E-98 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 06-07-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 Gene3D G3DSA:3.40.50.1100 43 146 1.9E-40 T 06-07-2017 APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 Gene3D G3DSA:3.40.50.1100 152 319 8.9E-70 T 06-07-2017 APT55_RS20255 965c8cf99c7c915f061226c608a7ebe1 328 Gene3D G3DSA:3.40.50.1100 2 42 8.9E-70 T 06-07-2017 APT55_RS29825 fd4e07c1e256cddc91005c82e0e09f56 280 Gene3D G3DSA:3.40.50.300 5 279 2.6E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29825 fd4e07c1e256cddc91005c82e0e09f56 280 SUPERFAMILY SSF52540 3 278 5.49E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS29825 fd4e07c1e256cddc91005c82e0e09f56 280 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 201 7.7E-24 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 Gene3D G3DSA:3.20.20.70 29 339 5.8E-122 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 PIRSF PIRSF003314 4 344 3.3E-127 T 06-07-2017 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 SUPERFAMILY SSF51395 30 341 5.5E-78 T 06-07-2017 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 7 344 41.274 T 06-07-2017 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 9 341 5.8E-127 T 06-07-2017 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 SMART SM01240 47 341 0.0024 T 06-07-2017 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 Pfam PF01070 FMN-dependent dehydrogenase 176 338 1.9E-24 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 APT55_RS14795 1881d6d1e8d78de1c78078b014efa781 344 Pfam PF01070 FMN-dependent dehydrogenase 9 104 2.1E-6 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 APT55_RS23635 636885e952ed3ddd99f233c29cec8e43 302 Pfam PF01040 UbiA prenyltransferase family 26 254 7.9E-26 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 APT55_RS23635 636885e952ed3ddd99f233c29cec8e43 302 PIRSF PIRSF005355 3 301 1.2E-65 T 06-07-2017 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 APT55_RS23635 636885e952ed3ddd99f233c29cec8e43 302 TIGRFAM TIGR02235 menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase 13 297 2.8E-116 T 06-07-2017 IPR011937 2-carboxy-1,4-naphthoquinone phytyltransferase GO:0004659|GO:0016021|GO:0042372 APT55_RS23635 636885e952ed3ddd99f233c29cec8e43 302 Hamap MF_01938 2-carboxy-1,4-naphthoquinone phytyltransferase [menA]. 14 298 33.891 T 06-07-2017 IPR011937 2-carboxy-1,4-naphthoquinone phytyltransferase GO:0004659|GO:0016021|GO:0042372 APT55_RS08580 606d68f1ffba32e158c859328a1f088e 256 Pfam PF06051 Domain of Unknown Function (DUF928) 66 249 1.2E-41 T 06-07-2017 IPR010328 Protein of unknown function DUF928 APT55_RS08580 606d68f1ffba32e158c859328a1f088e 256 Gene3D G3DSA:1.25.40.10 198 238 9.6E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13920 05bc304c35a4c502d086527f5a6126a2 301 Pfam PF10082 Putative beta-barrel porin 2 203 296 5.6E-6 T 06-07-2017 IPR018759 Putative beta-barrel porin 2 APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 Pfam PF13500 AAA domain 8 211 1.8E-22 T 06-07-2017 APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 SUPERFAMILY SSF52540 7 223 1.13E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 Pfam PF07085 DRTGG domain 216 322 1.9E-31 T 06-07-2017 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 Gene3D G3DSA:3.40.50.300 6 210 2.7E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 SUPERFAMILY SSF75138 212 327 5.49E-32 T 06-07-2017 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like APT55_RS17700 4679a1d01ff8d976c37834d26dc2a138 362 Gene3D G3DSA:3.40.1390.20 211 342 8.2E-41 T 06-07-2017 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:3.40.50.740 70 144 1.4E-69 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:3.40.50.740 386 537 1.4E-69 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:3.40.50.740 328 350 1.4E-69 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 SMART SM00926 2 68 8.9E-13 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Pfam PF00384 Molybdopterin oxidoreductase 70 499 2.7E-88 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 SUPERFAMILY SSF53706 5 583 1.7E-190 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:3.40.228.10 146 327 3.9E-65 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:2.40.40.20 545 715 1.5E-57 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Gene3D G3DSA:2.20.25.90 5 68 6.5E-17 T 06-07-2017 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 SUPERFAMILY SSF50692 571 715 2.26E-49 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Pfam PF01568 Molydopterin dinucleotide binding domain 599 710 7.5E-36 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 APT55_RS12125 07e4b3cc61fde0a740491743d78a81be 733 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 5 67 5.4E-19 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS12375 e111cf36956aca263fdef16e1210adc7 327 SUPERFAMILY SSF56112 18 318 8.46E-53 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS12375 e111cf36956aca263fdef16e1210adc7 327 Pfam PF01636 Phosphotransferase enzyme family 42 264 4.4E-25 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase APT55_RS12375 e111cf36956aca263fdef16e1210adc7 327 Gene3D G3DSA:3.90.1200.10 123 319 1.3E-27 T 06-07-2017 APT55_RS12375 e111cf36956aca263fdef16e1210adc7 327 Gene3D G3DSA:3.30.200.20 19 100 7.4E-12 T 06-07-2017 APT55_RS03305 3c394d230db3adbae1917c4274b5a473 303 PIRSF PIRSF000846 10 301 1.2E-87 T 06-07-2017 IPR009163 ATP adenylyltransferase GO:0003877|GO:0005524|GO:0009117 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 APT55_RS03305 3c394d230db3adbae1917c4274b5a473 303 Pfam PF09830 ATP adenylyltransferase 237 296 9.9E-20 T 06-07-2017 IPR019200 ATP adenylyltransferase, C-terminal GO:0003877 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 APT55_RS03305 3c394d230db3adbae1917c4274b5a473 303 SUPERFAMILY SSF54197 49 167 2.55E-20 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 APT55_RS11670 ae9a91ddc27626dd15112185e0042bef 137 Gene3D G3DSA:3.30.420.130 1 119 9.7E-45 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11670 ae9a91ddc27626dd15112185e0042bef 137 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 1 120 5.0E-49 T 06-07-2017 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 APT55_RS11670 ae9a91ddc27626dd15112185e0042bef 137 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 10 105 4.0E-18 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS11670 ae9a91ddc27626dd15112185e0042bef 137 SUPERFAMILY SSF53146 1 119 8.11E-33 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis APT55_RS15285 2b988d54a939209c1d9a38931ab29327 62 Gene3D G3DSA:1.10.1470.10 5 61 2.5E-12 T 06-07-2017 IPR008462 CsbD-like APT55_RS15285 2b988d54a939209c1d9a38931ab29327 62 Pfam PF05532 CsbD-like 5 57 4.3E-13 T 06-07-2017 IPR008462 CsbD-like APT55_RS15285 2b988d54a939209c1d9a38931ab29327 62 SUPERFAMILY SSF69047 5 60 1.31E-8 T 06-07-2017 IPR008462 CsbD-like APT55_RS05065 1f977aa26efa8f4f24f718e87276895f 143 SMART SM00448 20 135 2.7E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05065 1f977aa26efa8f4f24f718e87276895f 143 Gene3D G3DSA:3.40.50.2300 18 139 5.5E-22 T 06-07-2017 APT55_RS05065 1f977aa26efa8f4f24f718e87276895f 143 SUPERFAMILY SSF52172 12 138 1.31E-22 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05065 1f977aa26efa8f4f24f718e87276895f 143 Pfam PF00072 Response regulator receiver domain 22 134 5.8E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14300 f34786d5c0ca225888cbb23a3007fdbf 282 Pfam PF01925 Sulfite exporter TauE/SafE 9 251 1.0E-47 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 APT55_RS31235 f1be66802726dc3060f3769f547d687d 396 SUPERFAMILY SSF52440 164 272 6.04E-11 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS31235 f1be66802726dc3060f3769f547d687d 396 SUPERFAMILY SSF56059 6 154 2.79E-38 T 06-07-2017 APT55_RS31235 f1be66802726dc3060f3769f547d687d 396 SUPERFAMILY SSF56059 263 391 2.79E-38 T 06-07-2017 APT55_RS31235 f1be66802726dc3060f3769f547d687d 396 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 9 392 4.8E-62 T 06-07-2017 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain APT55_RS01180 d3cf5384890bc8bff26894ced96f226c 78 Pfam PF14261 Domain of unknown function (DUF4351) 16 74 4.3E-24 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS06705 57d103166e12ed92de80d67ac3775341 298 SUPERFAMILY SSF161098 59 284 4.45E-64 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS06705 57d103166e12ed92de80d67ac3775341 298 Gene3D G3DSA:1.20.58.370 8 48 3.9E-5 T 06-07-2017 APT55_RS06705 57d103166e12ed92de80d67ac3775341 298 Gene3D G3DSA:1.10.3720.10 67 286 2.8E-63 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS06705 57d103166e12ed92de80d67ac3775341 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 291 6.0E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS26395 ef3631254be867b0760a1e51a8f7f352 112 Gene3D G3DSA:1.10.260.40 2 69 4.7E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 Pfam PF00072 Response regulator receiver domain 6 114 1.9E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 3.7E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 Gene3D G3DSA:1.10.10.10 129 224 3.5E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 Gene3D G3DSA:3.40.50.2300 4 124 9.1E-32 T 06-07-2017 APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 SUPERFAMILY SSF52172 4 170 5.13E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 SMART SM00448 4 114 4.0E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS10800 8d5cd16dafb35aca47f6b0d3be8e7fff 260 SMART SM00862 148 223 1.0E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT55_RS24205 72fc3511cee96bb69ee4cc686885d25a 326 Pfam PF09992 Phosphodiester glycosidase 124 293 3.0E-22 T 06-07-2017 IPR018711 Phosphodiester glycosidase APT55_RS13520 585b5073e91a0b5d9b9803a8e480f70d 368 Pfam PF12698 ABC-2 family transporter protein 21 357 2.7E-37 T 06-07-2017 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 342 137.521 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 334 1.4E-128 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 PIRSF PIRSF002465 4 338 1.1E-126 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 Pfam PF02504 Fatty acid synthesis protein 6 327 1.3E-117 T 06-07-2017 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 Gene3D G3DSA:3.40.718.10 5 333 1.5E-127 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT55_RS20650 18cec52bc12c759584d82816b185b740 343 SUPERFAMILY SSF53659 6 334 3.62E-97 T 06-07-2017 APT55_RS02075 4193039b59215b15b3a419ab0eb299b5 142 Pfam PF01844 HNH endonuclease 21 67 2.7E-10 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS02075 4193039b59215b15b3a419ab0eb299b5 142 SMART SM00507 8 63 8.2E-5 T 06-07-2017 IPR003615 HNH nuclease APT55_RS21530 f844494ff12c60ec67780790340e634a 67 Gene3D G3DSA:3.10.20.30 2 67 1.5E-26 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS21530 f844494ff12c60ec67780790340e634a 67 SUPERFAMILY SSF54285 3 66 3.27E-19 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT55_RS21530 f844494ff12c60ec67780790340e634a 67 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 67 6.1E-24 T 06-07-2017 IPR010035 ThiS, thiamine-biosynthesis APT55_RS21530 f844494ff12c60ec67780790340e634a 67 Pfam PF02597 ThiS family 5 67 9.0E-15 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 PRINTS PR01249 Ribosomal protein L31 signature 3 20 2.7E-19 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 PRINTS PR01249 Ribosomal protein L31 signature 47 65 2.7E-19 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 PRINTS PR01249 Ribosomal protein L31 signature 32 47 2.7E-19 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 SUPERFAMILY SSF143800 3 67 5.49E-24 T 06-07-2017 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 TIGRFAM TIGR00105 L31: ribosomal protein bL31 3 67 2.3E-23 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 Pfam PF01197 Ribosomal protein L31 3 66 5.3E-23 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS09190 cb984c9efd08ec537295748b186ad4ad 72 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 2 69 26.66 T 06-07-2017 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT55_RS02800 7ddf80b260eb099849b198eabfb43082 113 Pfam PF08883 Dopa 4,5-dioxygenase family 7 106 1.1E-35 T 06-07-2017 IPR014980 Dopa 4,5-dioxygenase APT55_RS02800 7ddf80b260eb099849b198eabfb43082 113 PIRSF PIRSF028139 1 110 3.8E-46 T 06-07-2017 IPR014980 Dopa 4,5-dioxygenase APT55_RS02800 7ddf80b260eb099849b198eabfb43082 113 SUPERFAMILY SSF143410 2 108 1.57E-42 T 06-07-2017 IPR023389 DOPA-like domain APT55_RS02800 7ddf80b260eb099849b198eabfb43082 113 Gene3D G3DSA:3.30.70.1240 2 108 3.4E-40 T 06-07-2017 IPR023389 DOPA-like domain APT55_RS06045 f20ba73e45dc0420e986977c0e8e1bb2 198 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 3 171 5.7E-17 T 06-07-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APT55_RS06045 f20ba73e45dc0420e986977c0e8e1bb2 198 Gene3D G3DSA:3.40.50.1000 3 183 4.0E-27 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06045 f20ba73e45dc0420e986977c0e8e1bb2 198 Pfam PF13419 Haloacid dehalogenase-like hydrolase 127 171 7.4E-8 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06045 f20ba73e45dc0420e986977c0e8e1bb2 198 SUPERFAMILY SSF56784 3 95 1.57E-29 T 06-07-2017 IPR023214 HAD-like domain APT55_RS06045 f20ba73e45dc0420e986977c0e8e1bb2 198 SUPERFAMILY SSF56784 124 178 1.57E-29 T 06-07-2017 IPR023214 HAD-like domain APT55_RS26910 1ff716983056a9e6fbde6824e5226b3c 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 296 1.5E-37 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS17025 b4989abf131d704cfdb6a2b0bd09542a 253 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 8 250 7.9E-62 T 06-07-2017 IPR005226 UPF0014 family APT55_RS17025 b4989abf131d704cfdb6a2b0bd09542a 253 Pfam PF03649 Uncharacterised protein family (UPF0014) 5 244 1.2E-68 T 06-07-2017 IPR005226 UPF0014 family APT55_RS22550 e70d31b4f19672213bf8143279d2a514 284 Pfam PF02673 Bacitracin resistance protein BacA 21 271 1.4E-67 T 06-07-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 APT55_RS22550 e70d31b4f19672213bf8143279d2a514 284 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 15 277 17.122 T 06-07-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 APT55_RS22550 e70d31b4f19672213bf8143279d2a514 284 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 21 270 5.7E-73 T 06-07-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 APT55_RS29490 ace134ec4c3dbf65901b38257b3fc8b6 503 SUPERFAMILY SSF53448 95 349 7.69E-37 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS29490 ace134ec4c3dbf65901b38257b3fc8b6 503 Gene3D G3DSA:3.90.550.10 93 301 1.8E-19 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS29490 ace134ec4c3dbf65901b38257b3fc8b6 503 Pfam PF00535 Glycosyl transferase family 2 97 259 1.9E-25 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS22160 740db1c329860a7eb6127d52855d978c 253 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 248 4.3E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS22160 740db1c329860a7eb6127d52855d978c 253 SUPERFAMILY SSF161098 56 236 5.49E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS22160 740db1c329860a7eb6127d52855d978c 253 Gene3D G3DSA:1.10.3720.10 55 248 1.0E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS03120 104def58607c00347bc60c1666b00d33 148 Gene3D G3DSA:1.20.210.10 1 128 1.3E-47 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS03120 104def58607c00347bc60c1666b00d33 148 SUPERFAMILY SSF81442 1 132 1.31E-45 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS03120 104def58607c00347bc60c1666b00d33 148 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 1 74 5.8E-24 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 Pfam PF00487 Fatty acid desaturase 38 257 1.3E-16 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 185 206 4.1E-24 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 16 36 4.1E-24 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 99 128 4.1E-24 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 61 81 4.1E-24 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS05270 e2edd86e92cda8d8893aba0861a0c02d 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 228 242 4.1E-24 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS05650 406d500a62d346c4de834f2ab0d25355 149 Pfam PF11068 YlqD protein 8 146 7.1E-47 T 06-07-2017 IPR021297 YlqD protein APT55_RS21570 9216587c88af0cf713da4baff2783da1 298 SUPERFAMILY SSF53955 143 298 9.0E-41 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS21570 9216587c88af0cf713da4baff2783da1 298 Gene3D G3DSA:3.30.20.10 203 240 9.4E-11 T 06-07-2017 APT55_RS21570 9216587c88af0cf713da4baff2783da1 298 Gene3D G3DSA:1.10.530.10 162 178 8.9E-6 T 06-07-2017 APT55_RS21570 9216587c88af0cf713da4baff2783da1 298 Gene3D G3DSA:1.10.530.10 241 280 8.9E-6 T 06-07-2017 APT55_RS21570 9216587c88af0cf713da4baff2783da1 298 Pfam PF00182 Chitinase class I 204 261 1.0E-8 T 06-07-2017 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 APT55_RS06315 81762304238d888dc0a73c7f4edecc20 78 Gene3D G3DSA:1.10.260.40 16 72 4.2E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06315 81762304238d888dc0a73c7f4edecc20 78 SUPERFAMILY SSF47413 15 74 2.82E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06315 81762304238d888dc0a73c7f4edecc20 78 SMART SM00530 19 75 1.0E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06315 81762304238d888dc0a73c7f4edecc20 78 Pfam PF13560 Helix-turn-helix domain 19 71 7.2E-10 T 06-07-2017 APT55_RS26200 e1e8d617301d3c1f37b11ad9063ad4b9 177 Gene3D G3DSA:3.40.630.30 2 175 1.7E-49 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS26200 e1e8d617301d3c1f37b11ad9063ad4b9 177 Pfam PF13302 Acetyltransferase (GNAT) domain 11 149 1.1E-31 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS26200 e1e8d617301d3c1f37b11ad9063ad4b9 177 SUPERFAMILY SSF55729 2 175 1.1E-45 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 SUPERFAMILY SSF141571 25 164 1.7E-38 T 06-07-2017 APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 SUPERFAMILY SSF141571 125 248 3.92E-35 T 06-07-2017 APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 Pfam PF00805 Pentapeptide repeats (8 copies) 211 248 2.1E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 Pfam PF00805 Pentapeptide repeats (8 copies) 33 69 4.9E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 Pfam PF00805 Pentapeptide repeats (8 copies) 101 140 1.7E-13 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS10450 95fd867cefa04b5c4c75d41969ffeaf1 249 Pfam PF00805 Pentapeptide repeats (8 copies) 171 210 7.7E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 83 116 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 214 1.0E-44 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 13 27 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 Gene3D G3DSA:3.40.1010.10 9 117 2.5E-36 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 Gene3D G3DSA:3.30.950.10 123 236 1.0E-23 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 SUPERFAMILY SSF53790 8 236 2.62E-64 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 APT55_RS11990 ba08316ea5a9ea204f7e4dbb0cf15ce9 271 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 10 265 4.3E-90 T 06-07-2017 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 APT55_RS13930 d23ea12b273fba2744a9cfd7106e3352 155 Gene3D G3DSA:3.30.1460.10 23 154 3.0E-54 T 06-07-2017 APT55_RS13930 d23ea12b273fba2744a9cfd7106e3352 155 Pfam PF10722 Putative bacterial sensory transduction regulator 25 149 5.6E-17 T 06-07-2017 IPR019660 Putative sensory transduction regulator YbjN APT55_RS13930 d23ea12b273fba2744a9cfd7106e3352 155 SUPERFAMILY SSF69635 14 153 3.37E-44 T 06-07-2017 APT55_RS02935 aefecc6cb588a76e6366b4a696f32ce1 243 SUPERFAMILY SSF48317 28 219 1.22E-36 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS02935 aefecc6cb588a76e6366b4a696f32ce1 243 Gene3D G3DSA:1.20.144.10 54 217 3.3E-28 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS02935 aefecc6cb588a76e6366b4a696f32ce1 243 Pfam PF01569 PAP2 superfamily 107 214 5.2E-18 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS02935 aefecc6cb588a76e6366b4a696f32ce1 243 SMART SM00014 108 215 4.5E-14 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT55_RS03530 84f045c74a3e76d5513518f16cf69058 165 SUPERFAMILY SSF47413 28 78 9.96E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS03530 84f045c74a3e76d5513518f16cf69058 165 Gene3D G3DSA:1.10.260.40 29 81 8.2E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS03530 84f045c74a3e76d5513518f16cf69058 165 Pfam PF01381 Helix-turn-helix 29 73 2.7E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS05245 ee003ca2c03e0af03fb28347144561f6 315 SUPERFAMILY SSF53335 108 304 2.66E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05245 ee003ca2c03e0af03fb28347144561f6 315 Gene3D G3DSA:3.40.50.150 120 302 7.9E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS05245 ee003ca2c03e0af03fb28347144561f6 315 Pfam PF08241 Methyltransferase domain 147 248 1.7E-18 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS09765 ceec9aaf49b65163bdf6abd05ab48fba 72 Pfam PF00741 Gas vesicle protein 11 49 1.4E-16 T 06-07-2017 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 APT55_RS09765 ceec9aaf49b65163bdf6abd05ab48fba 72 Hamap MF_00576 Gas vesicle structural protein [gvpA]. 4 71 20.51 T 06-07-2017 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 APT55_RS09765 ceec9aaf49b65163bdf6abd05ab48fba 72 ProSitePatterns PS00669 Gas vesicles protein GVPa signature 2. 45 58 - T 06-07-2017 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 APT55_RS09765 ceec9aaf49b65163bdf6abd05ab48fba 72 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 12 26 - T 06-07-2017 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 APT55_RS22115 ee54ae4c349fb3f7a5f7d3f74d7bcc37 277 Pfam PF07444 Ycf66 protein N-terminus 4 79 6.8E-27 T 06-07-2017 IPR010004 Uncharacterised protein family Ycf66 APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 Pfam PF00005 ABC transporter 28 182 8.8E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 SMART SM00382 36 234 1.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 Gene3D G3DSA:3.40.50.300 6 255 1.3E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 13 263 1.6E-114 T 06-07-2017 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 APT55_RS11415 bd827e576a72242c492a586a3aef031a 263 SUPERFAMILY SSF52540 8 227 2.32E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03755 b39b56272e0eec554d449ef1b28faa09 160 SUPERFAMILY SSF103165 1 159 7.59E-74 T 06-07-2017 IPR007153 Adenosine specific kinase APT55_RS03755 b39b56272e0eec554d449ef1b28faa09 160 Gene3D G3DSA:2.10.70.30 102 142 1.4E-33 T 06-07-2017 APT55_RS03755 b39b56272e0eec554d449ef1b28faa09 160 Pfam PF04008 Adenosine specific kinase 6 159 1.7E-78 T 06-07-2017 IPR007153 Adenosine specific kinase APT55_RS03755 b39b56272e0eec554d449ef1b28faa09 160 Gene3D G3DSA:3.40.1520.10 14 101 6.2E-49 T 06-07-2017 IPR007153 Adenosine specific kinase APT55_RS20055 80a6e7514da0422ddcf9c558eb9a0173 200 Pfam PF13548 Domain of unknown function (DUF4126) 11 179 2.4E-49 T 06-07-2017 IPR025196 Domain of unknown function DUF4126 APT55_RS06630 860740e2a8cd3e82d3ac900c62f84009 260 Gene3D G3DSA:3.40.50.1820 32 141 1.5E-4 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS06630 860740e2a8cd3e82d3ac900c62f84009 260 Pfam PF07082 Protein of unknown function (DUF1350) 2 254 2.9E-120 T 06-07-2017 IPR010765 Protein of unknown function DUF1350 APT55_RS06630 860740e2a8cd3e82d3ac900c62f84009 260 SUPERFAMILY SSF53474 9 128 8.68E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS06630 860740e2a8cd3e82d3ac900c62f84009 260 SUPERFAMILY SSF53474 162 214 8.68E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS02255 8616c738533724d45d9a294c7064c128 301 SUPERFAMILY SSF141571 223 295 8.76E-16 T 06-07-2017 APT55_RS02255 8616c738533724d45d9a294c7064c128 301 SUPERFAMILY SSF141571 4 46 8.76E-16 T 06-07-2017 APT55_RS02255 8616c738533724d45d9a294c7064c128 301 Pfam PF00805 Pentapeptide repeats (8 copies) 14 47 6.3E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS02255 8616c738533724d45d9a294c7064c128 301 Pfam PF00805 Pentapeptide repeats (8 copies) 268 292 2.9E-5 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 SUPERFAMILY SSF111369 190 243 6.8E-6 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 SUPERFAMILY SSF111369 87 187 2.22E-11 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 Gene3D G3DSA:2.40.50.100 314 348 6.0E-23 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 Gene3D G3DSA:2.40.50.100 89 120 6.0E-23 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 Pfam PF13437 HlyD family secretion protein 316 395 7.1E-19 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 SUPERFAMILY SSF111369 258 390 4.84E-16 T 06-07-2017 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 98 118 2.7E-12 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 434 448 2.7E-12 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 359 383 2.7E-12 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS22495 bedf06ea7dfc846395ddc035a5939c21 448 Pfam PF13533 Biotin-lipoyl like 89 135 1.3E-15 T 06-07-2017 APT55_RS15050 da836763170dcc7da8d751796dc063ff 127 Gene3D G3DSA:3.10.180.10 6 122 4.9E-13 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS15050 da836763170dcc7da8d751796dc063ff 127 SUPERFAMILY SSF54593 4 120 1.35E-15 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS16040 556233b7604ecabe1b721aa6ce93df05 295 Gene3D G3DSA:3.40.50.300 36 290 2.5E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16040 556233b7604ecabe1b721aa6ce93df05 295 SUPERFAMILY SSF52540 57 287 5.01E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21805 207887991182051c247c350c5dce089b 425 Pfam PF02638 Glycosyl hydrolase-like 10 73 372 3.5E-102 T 06-07-2017 IPR003790 Glycosyl hydrolase-like 10 APT55_RS21805 207887991182051c247c350c5dce089b 425 Gene3D G3DSA:3.20.20.80 143 392 5.6E-10 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS21805 207887991182051c247c350c5dce089b 425 SUPERFAMILY SSF51445 73 415 8.86E-51 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS20610 d21853f2408f0b8004cd7f2869533ada 520 Pfam PF02163 Peptidase family M50 374 438 1.1E-6 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Gene3D G3DSA:2.70.98.40 15 255 3.8E-68 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 PIRSF PIRSF036289 9 741 2.5E-259 T 06-07-2017 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Gene3D G3DSA:1.50.10.10 300 681 7.6E-134 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Gene3D G3DSA:2.60.420.10 682 735 1.5E-12 T 06-07-2017 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 23 253 1.1E-64 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 SUPERFAMILY SSF48208 262 732 2.38E-114 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 305 692 1.7E-116 T 06-07-2017 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 700 729 3.0E-6 T 06-07-2017 IPR005194 Glycoside hydrolase family 65, C-terminal APT55_RS04820 8db328238c87715ec4c70aeac37ad804 745 SUPERFAMILY SSF74650 14 254 6.59E-60 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 SUPERFAMILY SSF55239 3 108 1.03E-45 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 10 106 3.4E-44 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 SMART SM00961 9 106 1.1E-50 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 PRINTS PR00152 RuBisCO small subunit signature 8 34 2.5E-8 T 06-07-2017 IPR024681 Ribulose bisphosphate carboxylase, small chain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 PRINTS PR00152 RuBisCO small subunit signature 36 51 2.5E-8 T 06-07-2017 IPR024681 Ribulose bisphosphate carboxylase, small chain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS12430 47b2320179989cc8668ae7d0eadceabb 115 Gene3D G3DSA:3.30.190.10 8 108 3.5E-48 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT55_RS14250 28c1eb949002468500aa111115d9a3a1 157 Pfam PF06146 Phosphate-starvation-inducible E 75 142 9.6E-20 T 06-07-2017 IPR020948 Phosphate-starvation-induced PsiE-like APT55_RS16295 1644a89974e254d90d96abc0d3d40756 506 Pfam PF03055 Retinal pigment epithelial membrane protein 29 502 8.2E-120 T 06-07-2017 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 APT55_RS23945 8f243d6cbfbe6f60825a0d811f182a30 358 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 9 60 9.7E-7 T 06-07-2017 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 510 8.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 531 8.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 551 8.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 496 8.5E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 Gene3D G3DSA:3.30.565.10 396 554 1.3E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 SMART SM00388 301 398 3.0E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 Pfam PF00512 His Kinase A (phospho-acceptor) domain 301 397 3.8E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 Gene3D G3DSA:1.10.287.130 296 327 2.3E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 Gene3D G3DSA:1.10.287.130 365 394 2.3E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 SUPERFAMILY SSF55874 385 552 1.13E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 SUPERFAMILY SSF47384 366 397 3.73E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 SUPERFAMILY SSF47384 296 336 3.73E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 SMART SM00387 443 554 1.1E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS23715 232947f56daac4b3695ddae1e95dd835 556 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 446 552 1.1E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20270 5a693adcc18c3f31a782eacc195d5355 245 Hamap MF_00618 Phycocyanobilin:ferredoxin oxidoreductase [pcyA]. 6 243 44.934 T 06-07-2017 IPR022870 Phycocyanobilin:ferredoxin oxidoreductase GO:0010024|GO:0050620|GO:0055114 KEGG: 00860+1.3.7.5|MetaCyc: PWY-5917|MetaCyc: PWY-7578 APT55_RS20270 5a693adcc18c3f31a782eacc195d5355 245 Pfam PF05996 Ferredoxin-dependent bilin reductase 22 242 1.0E-74 T 06-07-2017 IPR009249 Ferredoxin-dependent bilin reductase GO:0010024|GO:0016636|GO:0050897|GO:0055114 APT55_RS14505 8120eefd06e0c222db32023471ecb388 648 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 34 566 4.2E-151 T 06-07-2017 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 APT55_RS14505 8120eefd06e0c222db32023471ecb388 648 Pfam PF02272 DHHA1 domain 387 449 1.7E-11 T 06-07-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APT55_RS14505 8120eefd06e0c222db32023471ecb388 648 SUPERFAMILY SSF64182 68 465 6.15E-107 T 06-07-2017 APT55_RS14505 8120eefd06e0c222db32023471ecb388 648 Pfam PF01368 DHH family 88 208 2.3E-11 T 06-07-2017 IPR001667 DDH domain APT55_RS21665 1f5d075fd750d61f6003a3827070dcdd 125 Pfam PF14534 Domain of unknown function (DUF4440) 9 116 6.2E-16 T 06-07-2017 IPR027843 Domain of unknown function DUF4440 APT55_RS21665 1f5d075fd750d61f6003a3827070dcdd 125 Gene3D G3DSA:3.10.450.50 4 123 2.8E-32 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS21665 1f5d075fd750d61f6003a3827070dcdd 125 SUPERFAMILY SSF54427 4 118 6.71E-22 T 06-07-2017 IPR032710 NTF2-like domain APT55_RS11365 4b5f6d5a03ba03e95b8e7bbba87e3681 266 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS11365 4b5f6d5a03ba03e95b8e7bbba87e3681 266 Gene3D G3DSA:3.40.50.300 27 256 7.4E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11365 4b5f6d5a03ba03e95b8e7bbba87e3681 266 Pfam PF00005 ABC transporter 42 187 1.1E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS11365 4b5f6d5a03ba03e95b8e7bbba87e3681 266 SUPERFAMILY SSF52540 11 250 1.46E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS11365 4b5f6d5a03ba03e95b8e7bbba87e3681 266 SMART SM00382 51 236 1.0E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS09070 20b0aded690ada09e8d3729140882d8e 171 Pfam PF06527 TniQ 11 128 1.7E-9 T 06-07-2017 IPR009492 TniQ APT55_RS26330 f0e282f1190d61a5db086cfca876d697 81 Hamap MF_01503 UPF0296 protein . 4 81 27.426 T 06-07-2017 IPR007169 Uncharacterised protein family UPF0296 APT55_RS26330 f0e282f1190d61a5db086cfca876d697 81 Pfam PF04025 Domain of unknown function (DUF370) 6 78 7.8E-37 T 06-07-2017 IPR007169 Uncharacterised protein family UPF0296 APT55_RS26330 f0e282f1190d61a5db086cfca876d697 81 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 6 77 1.0E-28 T 06-07-2017 IPR007169 Uncharacterised protein family UPF0296 APT55_RS04315 a0f44c48c1811ba5828462ff312573cd 274 Gene3D G3DSA:3.40.50.1820 9 176 3.8E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04315 a0f44c48c1811ba5828462ff312573cd 274 Gene3D G3DSA:3.40.50.1820 212 270 3.8E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04315 a0f44c48c1811ba5828462ff312573cd 274 SUPERFAMILY SSF53474 6 268 3.3E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS04315 a0f44c48c1811ba5828462ff312573cd 274 Pfam PF00756 Putative esterase 14 266 3.3E-37 T 06-07-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 APT55_RS28510 c6f4cc55a7e65192b05f08a37b75558f 61 Pfam PF10706 Aminoglycoside-2''-adenylyltransferase 22 53 6.2E-8 T 06-07-2017 IPR019646 Aminoglycoside-2''-adenylyltransferase APT55_RS09735 1a420e90ff4ac2c0ce100a6f1aa84c33 77 Pfam PF05120 Gas vesicle protein G 2 76 9.5E-27 T 06-07-2017 IPR007804 Gas vesicle protein GvpG APT55_RS22805 6336596ee93100160247ca99183d038a 195 Gene3D G3DSA:3.40.50.620 1 183 1.2E-34 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS22805 6336596ee93100160247ca99183d038a 195 SUPERFAMILY SSF52374 1 183 1.1E-30 T 06-07-2017 APT55_RS22805 6336596ee93100160247ca99183d038a 195 Pfam PF01467 Cytidylyltransferase-like 5 162 1.4E-14 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT55_RS22805 6336596ee93100160247ca99183d038a 195 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 58 4.7E-8 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT55_RS23780 a77858e39e91aec6129024adf05e3a5b 144 Pfam PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase 58 140 2.5E-31 T 06-07-2017 IPR025564 Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 Gene3D G3DSA:3.20.20.140 355 446 1.4E-4 T 06-07-2017 APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 Gene3D G3DSA:3.20.20.140 61 302 2.5E-44 T 06-07-2017 APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 SUPERFAMILY SSF51556 64 304 1.29E-51 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 SUPERFAMILY SSF51556 7 35 1.29E-51 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 SUPERFAMILY SSF51556 365 446 1.29E-51 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS23110 7ddcd2dce283c01c407f5b379e035c69 463 Pfam PF04909 Amidohydrolase 118 446 3.9E-20 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:1.10.10.470 617 718 4.2E-29 T 06-07-2017 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 SUPERFAMILY SSF51445 257 493 3.57E-133 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 SUPERFAMILY SSF51445 528 820 3.57E-133 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 SUPERFAMILY SSF51445 3 164 3.57E-133 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 917 7.1E-283 T 06-07-2017 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Pfam PF00128 Alpha amylase, catalytic domain 26 99 2.6E-15 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.20.20.80 581 609 8.9E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.20.20.80 305 404 8.9E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.20.20.80 16 91 8.9E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.20.20.80 725 820 8.9E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 SMART SM00642 6 800 2.3E-5 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:1.10.150.200 412 477 2.0E-12 T 06-07-2017 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:1.10.150.200 511 544 2.0E-12 T 06-07-2017 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.30.1590.10 92 177 3.3E-36 T 06-07-2017 APT55_RS25665 f8c9112ee0e653eb111864405e67c49c 919 Gene3D G3DSA:3.30.1590.10 265 303 3.3E-36 T 06-07-2017 APT55_RS17575 e5627138c0538317ba23f648a5447a5c 266 Pfam PF06182 ABC-2 family transporter protein 36 265 2.3E-45 T 06-07-2017 IPR010390 Protein of unknown function DUF990 APT55_RS01685 d56f2ea9dac2b8b60f71553a021f385f 320 Pfam PF02397 Bacterial sugar transferase 127 314 4.1E-54 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS28775 9afd76ca92deb1d408170993e55a6446 171 Pfam PF07617 Protein of unknown function (DUF1579) 15 169 8.8E-72 T 06-07-2017 IPR011473 Protein of unknown function DUF1579 APT55_RS26545 410bfe6be5151f21110cc325c7c7d726 124 Pfam PF02472 Biopolymer transport protein ExbD/TolR 2 123 1.9E-26 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS14080 43eefa0930a09e13c04d6df654fbe6fd 125 SUPERFAMILY SSF52172 1 123 2.42E-33 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14080 43eefa0930a09e13c04d6df654fbe6fd 125 Pfam PF00072 Response regulator receiver domain 6 118 2.6E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14080 43eefa0930a09e13c04d6df654fbe6fd 125 Gene3D G3DSA:3.40.50.2300 3 122 6.7E-36 T 06-07-2017 APT55_RS14080 43eefa0930a09e13c04d6df654fbe6fd 125 SMART SM00448 4 118 1.4E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS08465 6bf534753b6056cb3cf84b976ad9f4a2 79 Pfam PF03683 Uncharacterised protein family (UPF0175) 6 71 2.3E-22 T 06-07-2017 IPR005368 Uncharacterised protein family UPF0175 APT55_RS15095 52a4b737016fab6672302e84c09e393a 131 SMART SM00448 12 126 6.8E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS15095 52a4b737016fab6672302e84c09e393a 131 SUPERFAMILY SSF52172 10 131 2.13E-24 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS15095 52a4b737016fab6672302e84c09e393a 131 Gene3D G3DSA:3.40.50.2300 10 131 6.3E-22 T 06-07-2017 APT55_RS15095 52a4b737016fab6672302e84c09e393a 131 Pfam PF00072 Response regulator receiver domain 14 126 2.4E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 Pfam PF14306 PUA-like domain 7 164 3.4E-56 T 06-07-2017 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 SUPERFAMILY SSF52374 173 384 1.1E-82 T 06-07-2017 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 SUPERFAMILY SSF88697 7 169 5.67E-54 T 06-07-2017 IPR015947 PUA-like domain APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 30 387 51.083 T 06-07-2017 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 Gene3D G3DSA:3.40.50.620 185 386 1.4E-93 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 9 382 1.3E-130 T 06-07-2017 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 Gene3D G3DSA:3.10.400.10 7 184 8.9E-64 T 06-07-2017 APT55_RS13325 c7cbf39ebaf936245de5dd5374fbc18a 387 Pfam PF01747 ATP-sulfurylase 173 383 5.6E-92 T 06-07-2017 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 APT55_RS00295 e59675a1e38bb92b49a29caba9560b6b 298 PIRSF PIRSF018001 1 296 3.6E-84 T 06-07-2017 IPR016708 Aspartoacylase GO:0016811 APT55_RS00295 e59675a1e38bb92b49a29caba9560b6b 298 Hamap MF_00704 Probable aspartoacylase. 3 294 41.796 T 06-07-2017 IPR016708 Aspartoacylase GO:0016811 APT55_RS00295 e59675a1e38bb92b49a29caba9560b6b 298 SUPERFAMILY SSF53187 5 295 4.63E-74 T 06-07-2017 APT55_RS00295 e59675a1e38bb92b49a29caba9560b6b 298 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 6 289 5.7E-57 T 06-07-2017 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 APT55_RS00295 e59675a1e38bb92b49a29caba9560b6b 298 Gene3D G3DSA:3.40.630.10 6 194 1.2E-14 T 06-07-2017 APT55_RS00345 72cf4ca6c599db2f5dbba148d9c45bac 377 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 115 360 2.4E-11 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00345 72cf4ca6c599db2f5dbba148d9c45bac 377 SUPERFAMILY SSF52266 262 372 2.23E-18 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00345 72cf4ca6c599db2f5dbba148d9c45bac 377 SUPERFAMILY SSF52266 110 192 2.23E-18 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00345 72cf4ca6c599db2f5dbba148d9c45bac 377 Gene3D G3DSA:3.40.50.1110 111 190 9.6E-19 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS00345 72cf4ca6c599db2f5dbba148d9c45bac 377 Gene3D G3DSA:3.40.50.1110 265 372 9.6E-19 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS01305 207392165bd5c1845a19ca65f25fa9a8 136 Pfam PF01957 NfeD-like C-terminal, partner-binding 6 134 2.3E-14 T 06-07-2017 IPR002810 NfeD-like, C-terminal domain APT55_RS01305 207392165bd5c1845a19ca65f25fa9a8 136 Gene3D G3DSA:2.40.50.140 80 134 8.8E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS01535 8aff001999b203d91bf2b7ef5d923fc5 194 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 4.5E-13 T 06-07-2017 IPR005149 Transcription regulator PadR, N-terminal APT55_RS01535 8aff001999b203d91bf2b7ef5d923fc5 194 SUPERFAMILY SSF46785 3 186 1.72E-43 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01535 8aff001999b203d91bf2b7ef5d923fc5 194 Gene3D G3DSA:1.10.10.10 1 86 9.7E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS01535 8aff001999b203d91bf2b7ef5d923fc5 194 Pfam PF10400 Virulence activator alpha C-term 92 184 9.9E-22 T 06-07-2017 IPR018309 Transcription regulator PadR, C-terminal APT55_RS17235 7550e80bb061dbc13e60ca635b8f961b 1175 Gene3D G3DSA:2.40.160.10 876 985 1.9E-9 T 06-07-2017 IPR023614 Porin domain APT55_RS17235 7550e80bb061dbc13e60ca635b8f961b 1175 Gene3D G3DSA:2.40.160.10 1040 1130 1.9E-9 T 06-07-2017 IPR023614 Porin domain APT55_RS17235 7550e80bb061dbc13e60ca635b8f961b 1175 SUPERFAMILY SSF56935 626 1073 1.01E-9 T 06-07-2017 APT55_RS17235 7550e80bb061dbc13e60ca635b8f961b 1175 Gene3D G3DSA:2.60.40.920 164 253 5.7E-4 T 06-07-2017 IPR003344 Big-1 (bacterial Ig-like domain 1) domain APT55_RS08655 1367770e1221e80c6275e83fe28fbeff 564 Gene3D G3DSA:1.25.40.10 440 552 1.3E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS08655 1367770e1221e80c6275e83fe28fbeff 564 SMART SM00028 486 519 290.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08655 1367770e1221e80c6275e83fe28fbeff 564 SMART SM00028 452 485 0.014 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS08655 1367770e1221e80c6275e83fe28fbeff 564 SUPERFAMILY SSF48452 447 522 4.09E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 SUPERFAMILY SSF141130 364 436 2.35E-8 T 06-07-2017 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Gene3D G3DSA:2.60.120.580 188 275 5.8E-56 T 06-07-2017 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Gene3D G3DSA:2.60.120.580 52 138 5.8E-56 T 06-07-2017 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Pfam PF03069 Acetamidase/Formamidase family 69 201 9.4E-15 T 06-07-2017 IPR004304 Acetamidase/Formamidase GO:0016811 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Pfam PF03069 Acetamidase/Formamidase family 206 286 3.2E-18 T 06-07-2017 IPR004304 Acetamidase/Formamidase GO:0016811 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Gene3D G3DSA:3.10.28.20 278 354 1.0E-16 T 06-07-2017 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 Gene3D G3DSA:3.10.28.20 365 436 4.4E-11 T 06-07-2017 APT55_RS24440 e640fbed3fe2c3443c3eb98c5dad86a3 442 SUPERFAMILY SSF141130 53 353 2.35E-79 T 06-07-2017 APT55_RS00090 a35a0d7286a47ecb1c2ba5ae9fa59bf5 321 Gene3D G3DSA:3.40.50.10330 49 92 6.3E-5 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 APT55_RS00090 a35a0d7286a47ecb1c2ba5ae9fa59bf5 321 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 122 2.3E-30 T 06-07-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 APT55_RS00090 a35a0d7286a47ecb1c2ba5ae9fa59bf5 321 SUPERFAMILY SSF111331 2 296 5.89E-66 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain APT55_RS00090 a35a0d7286a47ecb1c2ba5ae9fa59bf5 321 SMART SM00046 3 133 1.3E-17 T 06-07-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 APT55_RS00090 a35a0d7286a47ecb1c2ba5ae9fa59bf5 321 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 294 4.9E-47 T 06-07-2017 IPR005218 Diacylglycerol/lipid kinase APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SUPERFAMILY SSF48452 505 590 1.74E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Pfam PF13174 Tetratricopeptide repeat 35 54 0.12 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Gene3D G3DSA:1.25.40.10 498 580 2.2E-37 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Gene3D G3DSA:1.25.40.10 25 125 3.3E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Gene3D G3DSA:1.25.40.10 158 335 2.2E-37 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SMART SM00028 190 223 0.99 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SMART SM00028 89 122 60.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SMART SM00028 295 328 0.14 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SMART SM00028 525 558 2.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SMART SM00028 156 189 19.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Pfam PF13432 Tetratricopeptide repeat 79 123 0.0086 T 06-07-2017 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 Pfam PF13432 Tetratricopeptide repeat 162 223 3.9E-7 T 06-07-2017 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SUPERFAMILY SSF48452 28 122 3.45E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01240 0126e2b7bc5eefe8939b5cc4c7e5f69c 657 SUPERFAMILY SSF48452 156 349 3.45E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25000 102e0ba52e76b6dc380bdc396ae7733d 287 Gene3D G3DSA:3.40.50.1980 38 142 1.1E-17 T 06-07-2017 APT55_RS25000 102e0ba52e76b6dc380bdc396ae7733d 287 SUPERFAMILY SSF53807 36 282 4.71E-39 T 06-07-2017 APT55_RS25000 102e0ba52e76b6dc380bdc396ae7733d 287 Gene3D G3DSA:3.40.50.1980 143 284 5.5E-21 T 06-07-2017 APT55_RS25000 102e0ba52e76b6dc380bdc396ae7733d 287 Pfam PF01497 Periplasmic binding protein 40 261 6.6E-25 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 PRINTS PR01320 Inward rectifier K+ channel superfamily signature 204 222 1.0E-9 T 06-07-2017 IPR016449 Potassium channel, inwardly rectifying, Kir GO:0005242|GO:0006813|GO:0016021 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 PRINTS PR01320 Inward rectifier K+ channel superfamily signature 256 273 1.0E-9 T 06-07-2017 IPR016449 Potassium channel, inwardly rectifying, Kir GO:0005242|GO:0006813|GO:0016021 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 PRINTS PR01320 Inward rectifier K+ channel superfamily signature 281 294 1.0E-9 T 06-07-2017 IPR016449 Potassium channel, inwardly rectifying, Kir GO:0005242|GO:0006813|GO:0016021 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 PRINTS PR01320 Inward rectifier K+ channel superfamily signature 84 106 1.0E-9 T 06-07-2017 IPR016449 Potassium channel, inwardly rectifying, Kir GO:0005242|GO:0006813|GO:0016021 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 SUPERFAMILY SSF81296 118 293 8.86E-58 T 06-07-2017 IPR014756 Immunoglobulin E-set APT55_RS10900 61cb538479230421c0205584c2d5d893 294 Gene3D G3DSA:2.60.40.1400 126 293 8.9E-53 T 06-07-2017 IPR013518 Potassium channel, inwardly rectifying, Kir, cytoplasmic APT55_RS10900 61cb538479230421c0205584c2d5d893 294 Pfam PF01007 Inward rectifier potassium channel 80 291 4.1E-39 T 06-07-2017 IPR016449 Potassium channel, inwardly rectifying, Kir GO:0005242|GO:0006813|GO:0016021 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 Gene3D G3DSA:1.10.287.70 36 125 1.3E-15 T 06-07-2017 APT55_RS10900 61cb538479230421c0205584c2d5d893 294 SUPERFAMILY SSF81324 29 140 1.14E-19 T 06-07-2017 APT55_RS10645 e50e524e76fa1d7031e4c0f89c593e5d 195 SUPERFAMILY SSF51161 31 183 1.52E-39 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS10645 e50e524e76fa1d7031e4c0f89c593e5d 195 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 126 161 3.1E-9 T 06-07-2017 IPR001451 Hexapeptide repeat APT55_RS10645 e50e524e76fa1d7031e4c0f89c593e5d 195 Gene3D G3DSA:2.160.10.10 12 183 5.6E-44 T 06-07-2017 APT55_RS08500 7eb96abf217bfec6e7898a6d17d4b7e1 121 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 10 90 5.9E-5 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS14700 2992c28f90f3cf7f05756e739850768c 321 Pfam PF01944 Stage II sporulation protein M 116 290 5.3E-36 T 06-07-2017 IPR002798 Stage II sporulation protein M-like APT55_RS03215 26c78d32a0e8479d56e7746b90ab1a28 123 Gene3D G3DSA:3.10.180.10 6 122 1.5E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS03215 26c78d32a0e8479d56e7746b90ab1a28 123 SUPERFAMILY SSF54593 1 122 1.02E-17 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS08300 4a832c0d5763be884175837f51fb01de 170 Gene3D G3DSA:3.40.50.2020 2 170 1.1E-69 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS08300 4a832c0d5763be884175837f51fb01de 170 SUPERFAMILY SSF53271 2 161 4.54E-52 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS08300 4a832c0d5763be884175837f51fb01de 170 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 38.1 T 06-07-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 APT55_RS08300 4a832c0d5763be884175837f51fb01de 170 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 2.0E-71 T 06-07-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 APT55_RS08300 4a832c0d5763be884175837f51fb01de 170 Pfam PF00156 Phosphoribosyl transferase domain 24 153 1.1E-16 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 Gene3D G3DSA:3.40.50.300 526 699 2.9E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 Pfam PF13538 UvrD-like helicase C-terminal domain 643 693 8.4E-11 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 Gene3D G3DSA:3.40.50.300 227 474 1.4E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 Pfam PF08378 Nuclease-related domain 16 119 2.8E-6 T 06-07-2017 IPR011528 Nuclease-related domain, NERD APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 SUPERFAMILY SSF52540 230 490 7.17E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31280 e03e0bcd1db00aeb92216bf306214ae4 746 SUPERFAMILY SSF52540 532 701 7.17E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17390 4d64f5f8504d376ae4d02445fa89a3cb 733 Pfam PF04773 FecR protein 79 162 2.6E-7 T 06-07-2017 IPR006860 FecR protein APT55_RS15830 b441362530f0f86270fad4f3e76ad013 128 Pfam PF00072 Response regulator receiver domain 4 120 2.9E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS15830 b441362530f0f86270fad4f3e76ad013 128 Gene3D G3DSA:3.40.50.2300 1 127 4.4E-18 T 06-07-2017 APT55_RS15830 b441362530f0f86270fad4f3e76ad013 128 SMART SM00448 2 120 1.7E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS15830 b441362530f0f86270fad4f3e76ad013 128 SUPERFAMILY SSF52172 2 126 2.7E-17 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS21500 8bbace3c0e162ca99236411c135efc05 239 Pfam PF01966 HD domain 49 162 5.7E-16 T 06-07-2017 IPR006674 HD domain APT55_RS21500 8bbace3c0e162ca99236411c135efc05 239 SMART SM00471 45 173 3.8E-9 T 06-07-2017 IPR003607 HD/PDEase domain APT55_RS21500 8bbace3c0e162ca99236411c135efc05 239 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 41 213 1.9E-53 T 06-07-2017 IPR005249 Conserved hypothetical protein CHP00488 APT55_RS21500 8bbace3c0e162ca99236411c135efc05 239 Gene3D G3DSA:1.10.3210.10 34 217 2.3E-52 T 06-07-2017 IPR006674 HD domain APT55_RS21500 8bbace3c0e162ca99236411c135efc05 239 SUPERFAMILY SSF109604 32 214 1.47E-31 T 06-07-2017 APT55_RS29340 95e941572a47edb2993931815f8bfc7e 458 Gene3D G3DSA:3.10.28.10 228 251 0.001 T 06-07-2017 IPR027434 Homing endonuclease GO:0004519 APT55_RS29340 95e941572a47edb2993931815f8bfc7e 458 SUPERFAMILY SSF55608 220 268 5.95E-5 T 06-07-2017 IPR027434 Homing endonuclease GO:0004519 APT55_RS29340 95e941572a47edb2993931815f8bfc7e 458 Gene3D G3DSA:1.10.10.60 18 90 1.6E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS10285 9e4e911f575f0205b4f2c4a14fc4c61d 213 SUPERFAMILY SSF103039 3 197 1.44E-35 T 06-07-2017 IPR028976 CheC-like domain APT55_RS10285 9e4e911f575f0205b4f2c4a14fc4c61d 213 Gene3D G3DSA:3.40.1550.10 4 198 5.3E-44 T 06-07-2017 IPR028976 CheC-like domain APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 TIGRFAM TIGR01335 psaA: photosystem I core protein PsaA 1 751 0.0 T 06-07-2017 IPR006243 Photosystem I PsaA GO:0009522|GO:0015979|GO:0016021|GO:0046872 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PIRSF PIRSF002905 14 751 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 ProSitePatterns PS00419 Photosystem I psaA and psaB proteins signature. 574 583 - T 06-07-2017 IPR020586 Photosystem I PsaA/PsaB, conserved site MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 72 95 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 348 371 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 293 311 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 665 687 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 563 583 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 197 221 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 532 550 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 590 611 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 158 182 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 435 457 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 717 745 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 PRINTS PR00257 Plant photosystem I psaA and psaB protein signature 387 413 3.2E-159 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 Pfam PF00223 Photosystem I psaA/psaB protein 34 745 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 SUPERFAMILY SSF81558 28 748 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 Gene3D G3DSA:1.20.1130.10 4 749 0.0 T 06-07-2017 IPR001280 Photosystem I PsaA/PsaB GO:0009522|GO:0009579|GO:0015979|GO:0016021 MetaCyc: PWY-101 APT55_RS12945 38d3c372117264ffcd3b2b773561b471 751 Hamap MF_00458 Photosystem I P700 chlorophyll a apoprotein A1 [psaA]. 1 751 41.236 T 06-07-2017 IPR006243 Photosystem I PsaA GO:0009522|GO:0015979|GO:0016021|GO:0046872 MetaCyc: PWY-101 APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 SUPERFAMILY SSF55298 8 127 4.47E-49 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 Pfam PF07736 Chorismate mutase type I 10 126 1.8E-47 T 06-07-2017 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 10 126 8.0E-47 T 06-07-2017 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 PIRSF PIRSF005965 8 132 3.2E-52 T 06-07-2017 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 16 128 1.0E-42 T 06-07-2017 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT55_RS16310 7f111483080efa2cf2a2c2f9005c726f 136 Gene3D G3DSA:3.30.1330.40 10 127 7.9E-49 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT55_RS12825 aaab7fe141eddd6dd0ba7fb61bcf9a19 441 SUPERFAMILY SSF111283 6 439 6.93E-63 T 06-07-2017 APT55_RS12825 aaab7fe141eddd6dd0ba7fb61bcf9a19 441 Pfam PF01523 Putative modulator of DNA gyrase 27 301 1.2E-15 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS09515 a448a3077c7ef8d3861a25582ff91b28 69 TIGRFAM TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain 1 60 9.2E-9 T 06-07-2017 IPR022516 Nif11-like leader peptide APT55_RS09515 a448a3077c7ef8d3861a25582ff91b28 69 Pfam PF07862 Nitrogen fixation protein of unknown function 1 48 1.2E-13 T 06-07-2017 IPR012903 Uncharacterised protein family, nitrogen fixation APT55_RS05565 b68df626bcf1f60f449bfdd7c5d7de8d 147 Pfam PF00042 Globin 6 98 9.4E-13 T 06-07-2017 IPR000971 Globin GO:0019825|GO:0020037 APT55_RS05565 b68df626bcf1f60f449bfdd7c5d7de8d 147 SUPERFAMILY SSF46458 5 132 2.99E-33 T 06-07-2017 IPR009050 Globin-like APT55_RS05565 b68df626bcf1f60f449bfdd7c5d7de8d 147 Gene3D G3DSA:1.10.490.10 4 133 7.8E-41 T 06-07-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT55_RS06745 7b2e91b035cf330bd465c4a5454d064e 120 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 119 2.2E-38 T 06-07-2017 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS06745 7b2e91b035cf330bd465c4a5454d064e 120 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 3 120 20.454 T 06-07-2017 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 APT55_RS03715 3b633c37faec53769fca20f062e1fee3 429 Gene3D G3DSA:1.10.645.10 1 420 1.6E-87 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03715 3b633c37faec53769fca20f062e1fee3 429 SUPERFAMILY SSF56762 4 420 2.35E-91 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03715 3b633c37faec53769fca20f062e1fee3 429 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 411 420 - T 06-07-2017 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 APT55_RS03715 3b633c37faec53769fca20f062e1fee3 429 Pfam PF00374 Nickel-dependent hydrogenase 41 127 6.8E-16 T 06-07-2017 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 APT55_RS03715 3b633c37faec53769fca20f062e1fee3 429 Pfam PF00374 Nickel-dependent hydrogenase 337 420 5.9E-7 T 06-07-2017 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 APT55_RS10435 fa4f97b7ee21c83dc6c7566c7fa6856d 200 Pfam PF09990 Predicted membrane protein (DUF2231) 67 182 1.1E-27 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane APT55_RS23115 ee5dcfd0004f99601349e83d2113d3c1 103 Pfam PF06127 Protein of unknown function (DUF962) 3 87 1.0E-12 T 06-07-2017 IPR009305 Protein of unknown function DUF962 APT55_RS10210 c6a199dfe5bacd6f98be5036c65e067f 290 Pfam PF01148 Cytidylyltransferase family 4 282 2.3E-64 T 06-07-2017 APT55_RS02400 86775db91af2cb32861c527ebb5ecbdd 113 Pfam PF01638 HxlR-like helix-turn-helix 15 104 4.3E-25 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type APT55_RS02400 86775db91af2cb32861c527ebb5ecbdd 113 Gene3D G3DSA:1.10.10.10 5 105 6.0E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02400 86775db91af2cb32861c527ebb5ecbdd 113 SUPERFAMILY SSF46785 4 105 9.75E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS00275 edc8076fcb3a154e2954b29aa837dbb8 219 Pfam PF01596 O-methyltransferase 21 218 9.1E-74 T 06-07-2017 IPR002935 O-methyltransferase, family 3 GO:0008171 APT55_RS00275 edc8076fcb3a154e2954b29aa837dbb8 219 Gene3D G3DSA:3.40.50.150 6 219 7.1E-79 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS00275 edc8076fcb3a154e2954b29aa837dbb8 219 SUPERFAMILY SSF53335 12 219 7.23E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Pfam PF12867 DinB superfamily 2 124 8.6E-10 T 06-07-2017 IPR024775 DinB-like domain APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 2 373 7.6E-93 T 06-07-2017 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Gene3D G3DSA:1.20.120.450 3 131 5.0E-10 T 06-07-2017 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 SUPERFAMILY SSF109854 2 129 6.78E-20 T 06-07-2017 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Pfam PF03781 Sulfatase-modifying factor enzyme 1 181 299 7.6E-37 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Pfam PF03781 Sulfatase-modifying factor enzyme 1 301 374 2.0E-18 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Gene3D G3DSA:3.90.1580.10 301 375 2.1E-22 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 Gene3D G3DSA:3.90.1580.10 176 299 4.8E-39 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS06720 9dccfab4b676bc92dfad2019d9bc5ac8 379 SUPERFAMILY SSF56436 181 374 6.09E-67 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS27665 d95a5b213e945dad58eee009349f4ea8 179 SUPERFAMILY SSF141571 29 175 1.37E-28 T 06-07-2017 APT55_RS27665 d95a5b213e945dad58eee009349f4ea8 179 Pfam PF13599 Pentapeptide repeats (9 copies) 87 163 5.1E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS17570 37856bb624016d8106f0293fadaee817 272 Pfam PF06182 ABC-2 family transporter protein 34 271 4.8E-10 T 06-07-2017 IPR010390 Protein of unknown function DUF990 APT55_RS19855 098a9345c14f96bf6c538dcb1c2634d1 112 Gene3D G3DSA:3.90.20.10 27 111 1.6E-4 T 06-07-2017 IPR013829 Haemagglutinin, stalk GO:0019031|GO:0019064|GO:0046789 APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 Pfam PF03781 Sulfatase-modifying factor enzyme 1 341 414 2.6E-7 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 Pfam PF03781 Sulfatase-modifying factor enzyme 1 179 316 6.1E-26 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 Gene3D G3DSA:3.90.1580.10 175 414 1.6E-60 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 Pfam PF12867 DinB superfamily 15 146 7.2E-8 T 06-07-2017 IPR024775 DinB-like domain APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 SUPERFAMILY SSF56436 178 414 2.35E-70 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS28125 37c78c6bd3ecde8401ad584b2edb8c1c 415 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 11 414 4.0E-174 T 06-07-2017 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 APT55_RS30170 bfcc20dd4e44d04f8de23ce50634341c 1073 Pfam PF04465 Protein of unknown function (DUF499) 124 419 2.5E-28 T 06-07-2017 IPR007555 Protein of unknown function DUF499 APT55_RS23910 7af86fc4f802c9387d8e18c01a5e27b1 382 SUPERFAMILY SSF56112 38 292 4.31E-14 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS23910 7af86fc4f802c9387d8e18c01a5e27b1 382 Gene3D G3DSA:1.10.510.10 134 200 6.6E-6 T 06-07-2017 APT55_RS27890 16f5974244a0ee9af847f69a0e9183bf 388 SUPERFAMILY SSF53756 12 380 3.14E-72 T 06-07-2017 APT55_RS27890 16f5974244a0ee9af847f69a0e9183bf 388 Pfam PF13439 Glycosyltransferase Family 4 15 180 2.5E-19 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS27890 16f5974244a0ee9af847f69a0e9183bf 388 Pfam PF00534 Glycosyl transferases group 1 198 356 6.8E-24 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS27890 16f5974244a0ee9af847f69a0e9183bf 388 Gene3D G3DSA:3.40.50.2000 169 355 8.5E-21 T 06-07-2017 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 104 128 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 346 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 145 157 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 29 54 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 175 193 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 438 459 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 204 223 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 360 378 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 388 407 1.5E-106 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 SUPERFAMILY SSF81442 29 532 9.94E-181 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 Gene3D G3DSA:1.20.210.10 25 542 2.1E-197 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 32 531 3.2E-206 T 06-07-2017 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 APT55_RS11570 cfef3c6c8bbadc71ff5d188694969433 556 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 39 480 6.6E-150 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS20050 c4299f28c2d47d84f1cf1950d1dd3db5 350 SUPERFAMILY SSF69318 223 341 7.59E-7 T 06-07-2017 APT55_RS01885 48f81dba2e24456f38f4ebdbced753fe 1017 Gene3D G3DSA:3.40.50.10490 510 591 2.0E-4 T 06-07-2017 APT55_RS12795 92423d28b830bac43fa8700b53401a83 262 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 6 249 39.515 T 06-07-2017 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 APT55_RS12795 92423d28b830bac43fa8700b53401a83 262 Gene3D G3DSA:3.60.21.10 4 240 8.9E-45 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS12795 92423d28b830bac43fa8700b53401a83 262 SUPERFAMILY SSF56300 4 248 5.35E-61 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS12795 92423d28b830bac43fa8700b53401a83 262 Pfam PF00149 Calcineurin-like phosphoesterase 6 194 7.7E-23 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS12795 92423d28b830bac43fa8700b53401a83 262 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 194 249 3.0E-13 T 06-07-2017 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 APT55_RS11525 fde47b9d4b8a2be93161899b253491a2 167 SUPERFAMILY SSF81930 91 167 6.67E-16 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS11525 fde47b9d4b8a2be93161899b253491a2 167 Gene3D G3DSA:1.10.2090.10 9 76 2.4E-4 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS11525 fde47b9d4b8a2be93161899b253491a2 167 Gene3D G3DSA:1.10.2090.10 90 167 2.6E-16 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS11525 fde47b9d4b8a2be93161899b253491a2 167 Pfam PF09150 Orange carotenoid protein, N-terminal 91 167 2.7E-14 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS11525 fde47b9d4b8a2be93161899b253491a2 167 SUPERFAMILY SSF81930 3 76 4.18E-5 T 06-07-2017 IPR015233 Orange carotenoid-binding protein, N-terminal GO:0016037|GO:0030089|GO:0031404 APT55_RS08190 f8e585c7c8064bfa54df18ae6a379623 147 Gene3D G3DSA:3.40.140.10 5 139 8.7E-29 T 06-07-2017 APT55_RS08190 f8e585c7c8064bfa54df18ae6a379623 147 SUPERFAMILY SSF102712 3 139 8.37E-33 T 06-07-2017 APT55_RS08190 f8e585c7c8064bfa54df18ae6a379623 147 SMART SM00232 4 142 1.2E-19 T 06-07-2017 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 APT55_RS08190 f8e585c7c8064bfa54df18ae6a379623 147 Pfam PF14464 Prokaryotic homologs of the JAB domain 10 131 6.4E-28 T 06-07-2017 IPR028090 JAB domain, prokaryotic APT55_RS06580 f7c949fa6133c749d8734a0041f45b63 446 Pfam PF13847 Methyltransferase domain 63 175 1.4E-30 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS06580 f7c949fa6133c749d8734a0041f45b63 446 Gene3D G3DSA:3.40.50.150 62 299 1.7E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06580 f7c949fa6133c749d8734a0041f45b63 446 SUPERFAMILY SSF53335 59 175 5.92E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS06580 f7c949fa6133c749d8734a0041f45b63 446 SUPERFAMILY SSF53335 223 274 5.92E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS04040 c804cb3fb08f4b59cb228ed1e98334f9 202 Pfam PF00582 Universal stress protein family 34 173 4.9E-8 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS04040 c804cb3fb08f4b59cb228ed1e98334f9 202 Gene3D G3DSA:3.40.50.620 30 175 1.6E-11 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS04040 c804cb3fb08f4b59cb228ed1e98334f9 202 SUPERFAMILY SSF52402 33 94 1.51E-7 T 06-07-2017 APT55_RS04040 c804cb3fb08f4b59cb228ed1e98334f9 202 SUPERFAMILY SSF52402 124 196 1.51E-7 T 06-07-2017 APT55_RS19700 6f7dd76b6661ac8832b7e58140e1c1ae 3331 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 2406 2893 2.0E-5 T 06-07-2017 APT55_RS19700 6f7dd76b6661ac8832b7e58140e1c1ae 3331 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 2053 2128 2.8E-17 T 06-07-2017 IPR013491 Caudovirus, tape measure, N-terminal APT55_RS07140 b87a02307606d1ea3a7254825e78aa29 256 Gene3D G3DSA:3.40.50.150 8 215 2.1E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07140 b87a02307606d1ea3a7254825e78aa29 256 Pfam PF13649 Methyltransferase domain 48 144 1.8E-20 T 06-07-2017 APT55_RS07140 b87a02307606d1ea3a7254825e78aa29 256 SUPERFAMILY SSF53335 36 216 1.41E-34 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS30485 a5d438638a89fb517d155c513fd22bd7 1783 SUPERFAMILY SSF52540 272 460 1.33E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30485 a5d438638a89fb517d155c513fd22bd7 1783 Gene3D G3DSA:3.40.50.300 245 422 5.0E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30485 a5d438638a89fb517d155c513fd22bd7 1783 SMART SM00382 280 411 2.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS04855 309b1bf9a170826e48ad9b42d028c8fc 238 Pfam PF02397 Bacterial sugar transferase 46 232 3.2E-57 T 06-07-2017 IPR003362 Bacterial sugar transferase APT55_RS19310 f02aea2cb28f970592ef8c0b0fa0bcca 159 ProSitePatterns PS00211 ABC transporters family signature. 78 92 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS19310 f02aea2cb28f970592ef8c0b0fa0bcca 159 Gene3D G3DSA:3.40.50.300 5 157 2.1E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19310 f02aea2cb28f970592ef8c0b0fa0bcca 159 Pfam PF00005 ABC transporter 11 106 1.5E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS19310 f02aea2cb28f970592ef8c0b0fa0bcca 159 SUPERFAMILY SSF52540 3 157 1.09E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 Gene3D G3DSA:2.40.50.100 364 399 1.0E-19 T 06-07-2017 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 Gene3D G3DSA:2.40.50.100 122 155 1.0E-19 T 06-07-2017 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 133 153 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 379 400 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 412 436 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 490 510 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 436 459 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 91 114 1.9E-29 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 SUPERFAMILY SSF111369 121 216 2.48E-7 T 06-07-2017 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 Pfam PF13437 HlyD family secretion protein 367 478 1.5E-21 T 06-07-2017 APT55_RS03930 457494b31edfc95a637443c627f6ec54 510 Pfam PF13533 Biotin-lipoyl like 124 160 9.1E-9 T 06-07-2017 APT55_RS10520 e13895b634b1e7acc95e5e9ae20dcc02 100 Pfam PF11460 Protein of unknown function (DUF3007) 1 96 2.2E-43 T 06-07-2017 IPR021562 Protein of unknown function DUF3007 APT55_RS17050 b5adaede5199e3a28810e82fcf67d54f 139 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 8 116 3.9E-37 T 06-07-2017 IPR018745 Domain of unknown function DUF2294 APT55_RS22715 bbe99e5aeecf13016532ca57367e4f71 136 SMART SM00448 9 122 1.0E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22715 bbe99e5aeecf13016532ca57367e4f71 136 Gene3D G3DSA:3.40.50.2300 7 133 2.8E-31 T 06-07-2017 APT55_RS22715 bbe99e5aeecf13016532ca57367e4f71 136 Pfam PF00072 Response regulator receiver domain 11 122 1.3E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS22715 bbe99e5aeecf13016532ca57367e4f71 136 SUPERFAMILY SSF52172 9 128 7.54E-29 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS13175 4694d3d7c7135f7dc15f31f88459f47e 84 Gene3D G3DSA:1.10.287.950 4 80 4.2E-4 T 06-07-2017 APT55_RS24530 dc93185d44c63b9d1b897cfc49415d77 93 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 18 82 1.8E-7 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS24530 dc93185d44c63b9d1b897cfc49415d77 93 SUPERFAMILY SSF143011 3 81 7.59E-16 T 06-07-2017 APT55_RS16835 86d8218b204b864dce93f26b2e7f8677 264 Gene3D G3DSA:1.10.3720.10 7 261 1.7E-59 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16835 86d8218b204b864dce93f26b2e7f8677 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 254 1.3E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS16835 86d8218b204b864dce93f26b2e7f8677 264 SUPERFAMILY SSF161098 5 251 1.5E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS27715 96b7de9dd9aa9b5c84f93dd93ba87f86 207 SUPERFAMILY SSF51261 43 197 1.67E-34 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS27715 96b7de9dd9aa9b5c84f93dd93ba87f86 207 Pfam PF01551 Peptidase family M23 85 193 8.2E-18 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS27715 96b7de9dd9aa9b5c84f93dd93ba87f86 207 Gene3D G3DSA:2.70.70.10 47 199 6.1E-39 T 06-07-2017 APT55_RS27300 76a9ebd9452716350a5407d76c451ce5 686 SUPERFAMILY SSF52540 639 665 3.29E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27300 76a9ebd9452716350a5407d76c451ce5 686 SUPERFAMILY SSF52540 456 590 3.29E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27300 76a9ebd9452716350a5407d76c451ce5 686 SUPERFAMILY SSF52540 169 426 3.29E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27300 76a9ebd9452716350a5407d76c451ce5 686 SUPERFAMILY SSF52540 7 104 3.29E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS03640 a460656404a8c8c68dc893f9b61b0767 559 SUPERFAMILY SSF53383 22 142 1.68E-54 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03640 a460656404a8c8c68dc893f9b61b0767 559 SUPERFAMILY SSF53383 176 523 1.68E-54 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS03640 a460656404a8c8c68dc893f9b61b0767 559 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 190 402 8.7E-13 T 06-07-2017 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 APT55_RS03640 a460656404a8c8c68dc893f9b61b0767 559 Gene3D G3DSA:3.40.640.10 93 417 1.9E-25 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS24185 1592c18df05d28e030a8c038f2d4d074 381 Gene3D G3DSA:3.90.1150.10 275 379 5.3E-36 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS24185 1592c18df05d28e030a8c038f2d4d074 381 Pfam PF00266 Aminotransferase class-V 59 373 2.8E-42 T 06-07-2017 IPR000192 Aminotransferase class V domain APT55_RS24185 1592c18df05d28e030a8c038f2d4d074 381 Gene3D G3DSA:3.40.640.10 28 274 5.7E-71 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS24185 1592c18df05d28e030a8c038f2d4d074 381 SUPERFAMILY SSF53383 2 381 3.06E-80 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS24670 6d4486fcc7efc841c7223d0c6535381e 229 Pfam PF07099 Protein of unknown function (DUF1361) 25 196 1.2E-41 T 06-07-2017 IPR009793 Protein of unknown function DUF1361 APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 25 360 2.8E-179 T 06-07-2017 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 SMART SM00382 48 230 1.2E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 Gene3D G3DSA:3.40.50.300 24 225 6.5E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 SUPERFAMILY SSF52540 25 355 1.78E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 Gene3D G3DSA:1.10.8.80 272 360 9.1E-36 T 06-07-2017 APT55_RS20910 b4e52e82bbb9ec7b0896c572575c9df0 363 Pfam PF01078 Magnesium chelatase, subunit ChlI 138 207 2.4E-7 T 06-07-2017 IPR000523 Magnesium chelatase ChlI domain APT55_RS24925 c035b5d0f60a436df4443f5d7b2fe08d 649 SUPERFAMILY SSF48452 531 642 1.0E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24925 c035b5d0f60a436df4443f5d7b2fe08d 649 SUPERFAMILY SSF48452 148 266 1.0E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS31720 6d305c27a4d9d20569111b4f13a46477 59 Pfam PF14168 YjzC-like protein 1 45 3.9E-7 T 06-07-2017 IPR025549 YjzC-like protein APT55_RS26795 ef7e55ce0b141674b7130a8f3ad238aa 622 Pfam PF01926 50S ribosome-binding GTPase 291 399 3.5E-13 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 APT55_RS26795 ef7e55ce0b141674b7130a8f3ad238aa 622 Gene3D G3DSA:3.40.50.300 282 407 1.3E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26795 ef7e55ce0b141674b7130a8f3ad238aa 622 SUPERFAMILY SSF52540 284 418 3.16E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 SUPERFAMILY SSF53187 433 606 1.1E-54 T 06-07-2017 APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 SMART SM00646 493 602 2.2E-45 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 434 602 8.4E-52 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 Gene3D G3DSA:3.40.630.40 433 606 2.1E-59 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 Pfam PF11741 AMIN domain 187 268 6.1E-7 T 06-07-2017 IPR021731 AMIN domain APT55_RS15625 5f151947a39e317a4846a9c3f9259cb2 609 Pfam PF11741 AMIN domain 45 139 4.0E-17 T 06-07-2017 IPR021731 AMIN domain APT55_RS18830 b23e7f235c7b64fc53f95fcaa4f64938 293 SUPERFAMILY SSF161098 23 275 1.78E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18830 b23e7f235c7b64fc53f95fcaa4f64938 293 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 22 281 5.6E-122 T 06-07-2017 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 APT55_RS18830 b23e7f235c7b64fc53f95fcaa4f64938 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 273 2.0E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18830 b23e7f235c7b64fc53f95fcaa4f64938 293 Gene3D G3DSA:1.10.3720.10 26 281 8.8E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS18830 b23e7f235c7b64fc53f95fcaa4f64938 293 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 277 8.6E-107 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT55_RS31795 46fbb0147f2dd2b621fb26e47a5663ca 199 Pfam PF05685 Putative restriction endonuclease 11 189 1.6E-28 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS31795 46fbb0147f2dd2b621fb26e47a5663ca 199 Gene3D G3DSA:3.90.1570.10 2 192 1.1E-18 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS31795 46fbb0147f2dd2b621fb26e47a5663ca 199 SUPERFAMILY SSF52980 2 190 2.52E-19 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS13125 bc2eafc0080c607023d1b09043f12da8 262 SUPERFAMILY SSF53474 14 262 8.95E-40 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13125 bc2eafc0080c607023d1b09043f12da8 262 Pfam PF12697 Alpha/beta hydrolase family 31 254 3.8E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS13125 bc2eafc0080c607023d1b09043f12da8 262 Gene3D G3DSA:3.40.50.1820 17 262 2.3E-37 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS14530 b997797ba9fd8f6b0a0130e84ce207f7 294 SUPERFAMILY SSF161098 21 294 1.68E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14530 b997797ba9fd8f6b0a0130e84ce207f7 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 287 9.7E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS14530 b997797ba9fd8f6b0a0130e84ce207f7 294 Gene3D G3DSA:1.10.3720.10 19 281 3.2E-59 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 SUPERFAMILY SSF47729 1 90 1.27E-31 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 SMART SM00411 1 90 1.2E-45 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 Gene3D G3DSA:4.10.520.10 1 90 3.1E-36 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.7E-17 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.7E-17 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.7E-17 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APT55_RS09385 078bffddb52df36210c6033e49658c49 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 9.3E-33 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 APT55_RS25200 9b65e897b9cd0d04dfaa1106c12547cf 630 Gene3D G3DSA:3.40.710.10 296 603 8.3E-57 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS25200 9b65e897b9cd0d04dfaa1106c12547cf 630 Pfam PF00144 Beta-lactamase 300 602 8.0E-41 T 06-07-2017 IPR001466 Beta-lactamase-related APT55_RS25200 9b65e897b9cd0d04dfaa1106c12547cf 630 SUPERFAMILY SSF56601 297 604 5.41E-58 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS19445 d921d2065eefa17283255e07a5c8bf73 715 Pfam PF13148 Protein of unknown function (DUF3987) 197 524 1.6E-41 T 06-07-2017 IPR025048 Protein of unknown function DUF3987) APT55_RS08570 c46443dee6f6b325ebb82bd8d1d35eef 89 Gene3D G3DSA:3.30.70.1060 2 88 2.8E-23 T 06-07-2017 APT55_RS08570 c46443dee6f6b325ebb82bd8d1d35eef 89 Pfam PF03795 YCII-related domain 3 85 3.7E-14 T 06-07-2017 IPR005545 YCII-related APT55_RS08570 c46443dee6f6b325ebb82bd8d1d35eef 89 SUPERFAMILY SSF54909 2 88 4.56E-24 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 Pfam PF00582 Universal stress protein family 1 140 5.4E-29 T 06-07-2017 IPR006016 UspA GO:0006950 APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 PRINTS PR01438 Universal stress protein signature 2 20 2.5E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 PRINTS PR01438 Universal stress protein signature 100 112 2.5E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 PRINTS PR01438 Universal stress protein signature 118 140 2.5E-15 T 06-07-2017 IPR006015 Universal stress protein A APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 SUPERFAMILY SSF52402 3 141 7.28E-29 T 06-07-2017 APT55_RS00155 cfe4da310a88028ed9e9124927ee83e1 142 Gene3D G3DSA:3.40.50.620 1 142 7.3E-33 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 Gene3D G3DSA:3.90.79.10 8 179 1.6E-51 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 PRINTS PR00502 NUDIX hydrolase family signature 74 88 8.4E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 PRINTS PR00502 NUDIX hydrolase family signature 88 103 8.4E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 SUPERFAMILY SSF55811 9 179 4.2E-47 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 APT55_RS08725 ac4a38be552b0fcedfa82a706f32ba51 184 Pfam PF00293 NUDIX domain 47 161 2.7E-17 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 APT55_RS04655 a4185ae4d557bcbf08b31c6bf1fe1e31 150 SMART SM00507 6 61 7.9E-12 T 06-07-2017 IPR003615 HNH nuclease APT55_RS04655 a4185ae4d557bcbf08b31c6bf1fe1e31 150 Pfam PF01844 HNH endonuclease 19 60 1.6E-11 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS25340 4af704c4dbb589a1d693fae2200bf682 1662 Pfam PF13116 Protein of unknown function 255 374 5.9E-8 T 06-07-2017 IPR025263 Domain of unknown function DUF3971 APT55_RS25340 4af704c4dbb589a1d693fae2200bf682 1662 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1287 1662 3.4E-59 T 06-07-2017 IPR007452 Translocation and assembly module TamB APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 SUPERFAMILY SSF51126 430 513 3.45E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 SUPERFAMILY SSF51126 545 575 3.45E-12 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 SUPERFAMILY SSF51126 35 345 1.33E-40 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 SMART SM00912 28 140 5.3E-23 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 Gene3D G3DSA:2.160.20.10 50 286 9.9E-28 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 Gene3D G3DSA:2.160.20.10 347 383 9.9E-28 T 06-07-2017 IPR012334 Pectin lyase fold APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 58 135 6.9E-26 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS01290 d54482702239422be3e61fcb3400f98b 822 Pfam PF05860 haemagglutination activity domain 29 139 1.3E-31 T 06-07-2017 IPR008638 Filamentous haemagglutinin, N-terminal APT55_RS13150 fc7aad26207ac54f887e697fe8d8200f 122 Pfam PF01957 NfeD-like C-terminal, partner-binding 49 103 3.1E-6 T 06-07-2017 IPR002810 NfeD-like, C-terminal domain APT55_RS13150 fc7aad26207ac54f887e697fe8d8200f 122 Gene3D G3DSA:2.40.50.140 49 104 1.4E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS06035 0e878463e1b726287f13add6de55977b 72 SUPERFAMILY SSF47413 10 65 9.21E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS06035 0e878463e1b726287f13add6de55977b 72 SMART SM00530 8 65 1.0E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS06035 0e878463e1b726287f13add6de55977b 72 Pfam PF13560 Helix-turn-helix domain 11 66 8.8E-10 T 06-07-2017 APT55_RS06035 0e878463e1b726287f13add6de55977b 72 Gene3D G3DSA:1.10.260.40 11 65 2.9E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS13540 af15c8ef62b256aa76d3ada42957b5e9 620 Gene3D G3DSA:1.25.40.10 344 551 1.8E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13540 af15c8ef62b256aa76d3ada42957b5e9 620 SUPERFAMILY SSF48452 343 557 6.07E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 Gene3D G3DSA:3.40.50.1980 24 183 1.2E-44 T 06-07-2017 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 SUPERFAMILY SSF53807 35 306 3.92E-78 T 06-07-2017 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 38 304 4.3E-76 T 06-07-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 190 207 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 240 257 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 79 98 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 35 56 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 60 78 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00691 Adhesin B signature 284 302 1.5E-27 T 06-07-2017 IPR006129 Adhesin B GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 Gene3D G3DSA:3.40.50.1980 184 306 7.2E-45 T 06-07-2017 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 271 290 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 66 79 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 79 96 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 190 211 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 244 262 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS25680 59a40834c6ec90d5f571c094fdc8b8df 314 PRINTS PR00690 Adhesin family signature 35 53 1.2E-37 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 APT55_RS15695 b1235a5d3994e1ce56364d81a8f5cc6b 272 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 48 263 3.2E-14 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS15695 b1235a5d3994e1ce56364d81a8f5cc6b 272 SUPERFAMILY SSF56219 31 272 2.62E-26 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS15695 b1235a5d3994e1ce56364d81a8f5cc6b 272 Gene3D G3DSA:3.60.10.10 41 270 5.0E-13 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS09525 3dff37b897e6e0bb35ef9a191c03b075 701 SMART SM00728 618 664 1.5E-4 T 06-07-2017 IPR006637 Clostridial hydrophobic repeat APT55_RS09525 3dff37b897e6e0bb35ef9a191c03b075 701 SMART SM00728 573 617 0.0054 T 06-07-2017 IPR006637 Clostridial hydrophobic repeat APT55_RS09525 3dff37b897e6e0bb35ef9a191c03b075 701 Pfam PF07538 Clostridial hydrophobic W 619 653 2.5E-12 T 06-07-2017 IPR006637 Clostridial hydrophobic repeat APT55_RS09525 3dff37b897e6e0bb35ef9a191c03b075 701 Pfam PF07538 Clostridial hydrophobic W 666 698 1.5E-9 T 06-07-2017 IPR006637 Clostridial hydrophobic repeat APT55_RS09525 3dff37b897e6e0bb35ef9a191c03b075 701 Pfam PF07538 Clostridial hydrophobic W 574 606 1.3E-6 T 06-07-2017 IPR006637 Clostridial hydrophobic repeat APT55_RS06370 0d0f95f51acd9e299212bea926c301b6 195 Gene3D G3DSA:1.10.10.10 124 186 4.1E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS06370 0d0f95f51acd9e299212bea926c301b6 195 SUPERFAMILY SSF52172 59 130 1.25E-6 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS06370 0d0f95f51acd9e299212bea926c301b6 195 Gene3D G3DSA:3.40.50.2300 7 110 3.7E-5 T 06-07-2017 APT55_RS22185 e14fb2c3f8e3095efcd4b0a5cb7bb21d 454 Gene3D G3DSA:3.30.465.10 87 197 3.2E-12 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 APT55_RS22185 e14fb2c3f8e3095efcd4b0a5cb7bb21d 454 SUPERFAMILY SSF56176 4 196 6.54E-50 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 APT55_RS22185 e14fb2c3f8e3095efcd4b0a5cb7bb21d 454 Pfam PF01565 FAD binding domain 31 164 1.4E-29 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT55_RS22185 e14fb2c3f8e3095efcd4b0a5cb7bb21d 454 Gene3D G3DSA:3.30.43.10 21 86 4.7E-14 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 APT55_RS22185 e14fb2c3f8e3095efcd4b0a5cb7bb21d 454 Pfam PF08031 Berberine and berberine like 401 445 9.9E-19 T 06-07-2017 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 APT55_RS23480 5e03fb6d5188bf57e60a07b0303a0ac3 395 Pfam PF00534 Glycosyl transferases group 1 201 364 1.4E-44 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS23480 5e03fb6d5188bf57e60a07b0303a0ac3 395 Gene3D G3DSA:3.40.50.2000 169 363 9.9E-36 T 06-07-2017 APT55_RS23480 5e03fb6d5188bf57e60a07b0303a0ac3 395 Pfam PF13439 Glycosyltransferase Family 4 15 187 3.7E-27 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS23480 5e03fb6d5188bf57e60a07b0303a0ac3 395 SUPERFAMILY SSF53756 1 387 5.58E-90 T 06-07-2017 APT55_RS04725 c40bcbe1e05e878ce4086b0a694f16ee 188 Pfam PF08239 Bacterial SH3 domain 120 177 2.0E-8 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS27700 7d8f264fd793945eb27a39c0de3dd6f5 189 Gene3D G3DSA:3.90.1570.10 3 160 6.3E-22 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS27700 7d8f264fd793945eb27a39c0de3dd6f5 189 Pfam PF05685 Putative restriction endonuclease 12 178 2.8E-33 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27700 7d8f264fd793945eb27a39c0de3dd6f5 189 SUPERFAMILY SSF52980 2 164 5.9E-21 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS27480 d943bf403e29c4f2f996921d095c3bc9 460 Gene3D G3DSA:3.40.50.410 38 223 5.6E-24 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27480 d943bf403e29c4f2f996921d095c3bc9 460 SMART SM00327 40 235 7.4E-21 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27480 d943bf403e29c4f2f996921d095c3bc9 460 Pfam PF00092 von Willebrand factor type A domain 42 222 1.8E-15 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27480 d943bf403e29c4f2f996921d095c3bc9 460 SUPERFAMILY SSF53300 39 53 9.3E-28 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS27480 d943bf403e29c4f2f996921d095c3bc9 460 SUPERFAMILY SSF53300 81 226 9.3E-28 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 Gene3D G3DSA:3.90.1300.10 2 480 2.2E-192 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 8 474 1.2E-210 T 06-07-2017 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 SUPERFAMILY SSF75304 2 480 3.66E-177 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 ProSitePatterns PS00571 Amidases signature. 148 179 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 Pfam PF01425 Amidase 20 462 9.0E-174 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS16020 a7189b824b2cef1c1a3f2564f45c7da7 482 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 7 474 98.119 T 06-07-2017 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 Hamap MF_00594 Cytochrome c6 [petJ]. 32 116 26.092 T 06-07-2017 IPR023655 Cytochrome c6 GO:0005506|GO:0009055 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 PRINTS PR00605 Class IC cytochrome C signature 86 108 2.7E-12 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 PRINTS PR00605 Class IC cytochrome C signature 43 54 2.7E-12 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 SUPERFAMILY SSF46626 12 116 6.22E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 Gene3D G3DSA:1.10.760.10 34 116 3.3E-24 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS03400 7413d5ed92c87c9db42ce827d88448a9 133 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 33 108 3.9E-16 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT55_RS31465 9bdcfbb76a62c47977c45b514818f195 127 Pfam PF07878 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 2 44 3.2E-11 T 06-07-2017 IPR012869 CopG-like ribbon-helix-helix domain APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 Gene3D G3DSA:3.40.1050.10 1 206 8.2E-64 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 SMART SM00947 27 195 5.8E-62 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 Pfam PF00484 Carbonic anhydrase 35 191 1.7E-48 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 SUPERFAMILY SSF53056 1 205 4.58E-63 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26835 85919b0a2eac559155ae0d7070039f79 279 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT55_RS26830 7a55fc414fd60a7f82e83f4ee65711ec 1257 Pfam PF16258 Domain of unknown function (DUF4912) 946 1059 4.0E-43 T 06-07-2017 IPR032585 Protein of unknown function DUF4912 APT55_RS26830 7a55fc414fd60a7f82e83f4ee65711ec 1257 Pfam PF12849 PBP superfamily domain 49 279 9.8E-28 T 06-07-2017 IPR024370 PBP domain APT55_RS26830 7a55fc414fd60a7f82e83f4ee65711ec 1257 SUPERFAMILY SSF53850 53 290 3.83E-40 T 06-07-2017 APT55_RS26830 7a55fc414fd60a7f82e83f4ee65711ec 1257 Gene3D G3DSA:3.40.190.10 53 184 2.8E-25 T 06-07-2017 APT55_RS24000 1ed52a01f89e244b97149c9241457a94 171 Pfam PF09351 Domain of unknown function (DUF1993) 10 159 5.1E-41 T 06-07-2017 IPR018531 Domain of unknown function DUF1993 APT55_RS24000 1ed52a01f89e244b97149c9241457a94 171 SUPERFAMILY SSF109854 8 164 2.84E-43 T 06-07-2017 APT55_RS24000 1ed52a01f89e244b97149c9241457a94 171 Gene3D G3DSA:1.20.120.450 7 159 1.6E-41 T 06-07-2017 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase APT55_RS22235 2c6d84452d68c9b0bbb1e0dc17e4929d 205 Pfam PF00581 Rhodanese-like domain 80 175 3.8E-8 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS22235 2c6d84452d68c9b0bbb1e0dc17e4929d 205 Gene3D G3DSA:3.40.250.10 69 148 1.9E-12 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS22235 2c6d84452d68c9b0bbb1e0dc17e4929d 205 SUPERFAMILY SSF52821 61 177 8.09E-15 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS10660 df529747c230fb65b1771400a3886672 351 Pfam PF00534 Glycosyl transferases group 1 205 344 1.8E-21 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS10660 df529747c230fb65b1771400a3886672 351 SUPERFAMILY SSF53756 7 343 2.56E-39 T 06-07-2017 APT55_RS10660 df529747c230fb65b1771400a3886672 351 Gene3D G3DSA:3.40.50.2000 205 342 4.3E-17 T 06-07-2017 APT55_RS31730 596821e16749e8241eb71e33e24ff203 133 Pfam PF04326 Putative DNA-binding domain 1 117 1.1E-10 T 06-07-2017 IPR007421 Schlafen, AAA domain GO:0005524 APT55_RS23960 c3d9600d6991cda5c1d5de20e52c5485 258 Pfam PF04474 Protein of unknown function (DUF554) 22 251 3.1E-71 T 06-07-2017 IPR007563 Protein of unknown function DUF554 APT55_RS28760 5b3d719feb2ab5016914ecf8aa1f99ba 204 SUPERFAMILY SSF52317 6 173 2.78E-30 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS28760 5b3d719feb2ab5016914ecf8aa1f99ba 204 Gene3D G3DSA:3.40.50.880 7 173 3.3E-30 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS28760 5b3d719feb2ab5016914ecf8aa1f99ba 204 Pfam PF01965 DJ-1/PfpI family 6 171 5.8E-25 T 06-07-2017 IPR002818 DJ-1/PfpI APT55_RS13620 ccd8de923ce7bf1a0673c92e7b0ff43e 75 Pfam PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) 2 70 1.6E-30 T 06-07-2017 IPR010527 Photosystem II PsbU, oxygen evolving complex GO:0009523|GO:0009654|GO:0015979|GO:0019898|GO:0042549 APT55_RS13620 ccd8de923ce7bf1a0673c92e7b0ff43e 75 Gene3D G3DSA:1.10.150.320 2 68 3.0E-24 T 06-07-2017 APT55_RS13620 ccd8de923ce7bf1a0673c92e7b0ff43e 75 SUPERFAMILY SSF81585 2 66 3.27E-18 T 06-07-2017 APT55_RS20335 c3a8167f262dbb0e59a1e0cfd85c01a7 320 Pfam PF04198 Putative sugar-binding domain 64 318 2.2E-68 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 APT55_RS20335 c3a8167f262dbb0e59a1e0cfd85c01a7 320 SUPERFAMILY SSF100950 63 318 2.43E-59 T 06-07-2017 APT55_RS20335 c3a8167f262dbb0e59a1e0cfd85c01a7 320 Gene3D G3DSA:3.40.50.1360 61 318 3.6E-66 T 06-07-2017 APT55_RS12660 27beba391e63313c648941e087e5f182 475 Pfam PF00361 Proton-conducting membrane transporter 113 372 2.0E-38 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 Pfam PF00005 ABC transporter 20 165 5.9E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 PIRSF PIRSF039137 1 236 2.7E-109 T 06-07-2017 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 SUPERFAMILY SSF52540 3 234 1.61E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 Gene3D G3DSA:3.40.50.300 2 233 6.2E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22920 3e2626b5c202a2b98db106628f029026 236 SMART SM00382 29 214 2.7E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS02625 f4e4c64fa9b4eac93281048f81dd8df3 593 SUPERFAMILY SSF90257 95 210 1.46E-5 T 06-07-2017 APT55_RS27810 efd6abd29e749868af58be6a6b6883a6 280 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 272 8.2E-124 T 06-07-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS27810 efd6abd29e749868af58be6a6b6883a6 280 Pfam PF00793 DAHP synthetase I family 9 263 3.0E-67 T 06-07-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS27810 efd6abd29e749868af58be6a6b6883a6 280 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 12 274 52.132 T 06-07-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT55_RS27810 efd6abd29e749868af58be6a6b6883a6 280 SUPERFAMILY SSF51569 5 273 5.13E-104 T 06-07-2017 APT55_RS27810 efd6abd29e749868af58be6a6b6883a6 280 Gene3D G3DSA:3.20.20.70 17 273 9.0E-116 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS28645 f756e9bacf0c6e59ddaf7f498a40489c 421 Gene3D G3DSA:3.30.565.10 310 381 0.001 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS28645 f756e9bacf0c6e59ddaf7f498a40489c 421 SUPERFAMILY SSF55874 303 381 5.74E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS29640 7eb0ccbb16dac8ce6b72f4de95e1aab8 265 Pfam PF04098 Rad52/22 family double-strand break repair protein 8 133 9.5E-5 T 06-07-2017 IPR007232 DNA repair protein Rad52/59/22 GO:0006281|GO:0006310 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 Gene3D G3DSA:3.20.20.70 135 271 5.2E-61 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 283 1.6E-103 T 06-07-2017 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 25 112 2.0E-24 T 06-07-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 Gene3D G3DSA:3.90.1170.20 6 134 1.9E-47 T 06-07-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 PIRSF PIRSF006250 9 285 5.1E-90 T 06-07-2017 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 SUPERFAMILY SSF54675 9 113 3.37E-29 T 06-07-2017 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 282 2.4E-64 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT55_RS15185 9256e379aa6a59abfe1d032f2c187d56 285 SUPERFAMILY SSF51690 114 283 3.57E-60 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT55_RS29105 41d06a8a432fc94bee4f2621feacf497 364 SUPERFAMILY SSF56112 6 350 1.46E-36 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS29105 41d06a8a432fc94bee4f2621feacf497 364 Pfam PF01636 Phosphotransferase enzyme family 24 265 7.7E-26 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase APT55_RS29105 41d06a8a432fc94bee4f2621feacf497 364 Gene3D G3DSA:3.90.1200.10 126 340 4.9E-19 T 06-07-2017 APT55_RS20175 d66b33d41b5ff67d6980867325f990a1 183 SUPERFAMILY SSF111126 1 182 1.28E-51 T 06-07-2017 IPR024096 NO signalling/Golgi transport ligand-binding domain APT55_RS20175 d66b33d41b5ff67d6980867325f990a1 183 Gene3D G3DSA:3.90.1520.10 1 181 9.2E-48 T 06-07-2017 APT55_RS20175 d66b33d41b5ff67d6980867325f990a1 183 Pfam PF07700 Haem-NO-binding 2 162 2.0E-52 T 06-07-2017 IPR011644 Heme-NO binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 APT55_RS09905 a2955f647bf9d1a649fe59d5c1e7d760 154 Gene3D G3DSA:3.40.420.10 32 113 2.1E-4 T 06-07-2017 IPR016138 Ribosome-inactivating protein, subdomain 1 GO:0017148|GO:0030598 APT55_RS28805 76ebbc1d22e55f28eace36319c926791 63 Gene3D G3DSA:3.40.570.10 7 61 2.3E-9 T 06-07-2017 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 APT55_RS28805 76ebbc1d22e55f28eace36319c926791 63 Pfam PF01223 DNA/RNA non-specific endonuclease 7 49 2.6E-6 T 06-07-2017 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 APT55_RS28805 76ebbc1d22e55f28eace36319c926791 63 SUPERFAMILY SSF54060 7 58 2.83E-10 T 06-07-2017 APT55_RS06870 0d8009cc615c86f701411a34c2af4ac8 274 Pfam PF02633 Creatinine amidohydrolase 15 258 5.7E-62 T 06-07-2017 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS06870 0d8009cc615c86f701411a34c2af4ac8 274 Gene3D G3DSA:3.40.50.10310 10 264 9.4E-74 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS06870 0d8009cc615c86f701411a34c2af4ac8 274 SUPERFAMILY SSF102215 10 264 1.29E-73 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS12895 2c28bff885b1636878d3d368bdeddb2d 388 SUPERFAMILY SSF51261 183 388 2.51E-61 T 06-07-2017 IPR011055 Duplicated hybrid motif APT55_RS12895 2c28bff885b1636878d3d368bdeddb2d 388 Pfam PF01551 Peptidase family M23 289 384 4.0E-36 T 06-07-2017 IPR016047 Peptidase M23 APT55_RS12895 2c28bff885b1636878d3d368bdeddb2d 388 Gene3D G3DSA:2.70.70.10 252 388 5.2E-52 T 06-07-2017 APT55_RS19330 0b5f8476b3cd64bed42517390ae308a0 150 Pfam PF03928 Haem-degrading 17 138 9.8E-29 T 06-07-2017 IPR005624 Haem-degrading APT55_RS19330 0b5f8476b3cd64bed42517390ae308a0 150 SUPERFAMILY SSF143744 14 140 5.1E-33 T 06-07-2017 APT55_RS16760 0108093284a987a4f82a9b8a565b97d8 363 Pfam PF02374 Anion-transporting ATPase 4 251 1.8E-32 T 06-07-2017 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 APT55_RS16760 0108093284a987a4f82a9b8a565b97d8 363 SUPERFAMILY SSF52540 1 157 2.4E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16760 0108093284a987a4f82a9b8a565b97d8 363 SUPERFAMILY SSF52540 184 273 2.4E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS16760 0108093284a987a4f82a9b8a565b97d8 363 SUPERFAMILY SSF49764 305 362 3.45E-5 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS16760 0108093284a987a4f82a9b8a565b97d8 363 Gene3D G3DSA:3.40.50.300 1 271 4.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04660 3d5ba7a58a4adef930e27a490918ef74 325 Pfam PF00535 Glycosyl transferase family 2 7 181 3.1E-20 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS04660 3d5ba7a58a4adef930e27a490918ef74 325 SUPERFAMILY SSF53448 1 254 3.38E-43 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS04660 3d5ba7a58a4adef930e27a490918ef74 325 Gene3D G3DSA:3.90.550.10 4 248 1.4E-37 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS17610 aee18223ca9cde205e055069505c1d22 72 Pfam PF14217 Domain of unknown function (DUF4327) 7 72 2.8E-26 T 06-07-2017 IPR025477 Protein of unknown function DUF4327 APT55_RS26580 cedfde16e61723475e3584408eaeb4dd 471 Gene3D G3DSA:3.90.550.10 101 354 4.5E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS26580 cedfde16e61723475e3584408eaeb4dd 471 Pfam PF13641 Glycosyltransferase like family 2 101 334 1.3E-38 T 06-07-2017 APT55_RS26580 cedfde16e61723475e3584408eaeb4dd 471 SUPERFAMILY SSF53448 95 367 9.0E-53 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS15345 874c480032111540846def6e0f3a5ceb 787 Pfam PF12704 MacB-like periplasmic core domain 23 233 2.9E-7 T 06-07-2017 IPR025857 MacB-like periplasmic core domain APT55_RS15345 874c480032111540846def6e0f3a5ceb 787 Pfam PF02687 FtsX-like permease family 664 776 1.9E-12 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS15345 874c480032111540846def6e0f3a5ceb 787 Pfam PF02687 FtsX-like permease family 271 388 2.8E-15 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS13245 5abdbb75042fbd35bf4e7434167a0fe2 157 Pfam PF02391 MoaE protein 21 133 7.2E-39 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS13245 5abdbb75042fbd35bf4e7434167a0fe2 157 Gene3D G3DSA:3.90.1170.40 17 149 1.9E-47 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS13245 5abdbb75042fbd35bf4e7434167a0fe2 157 SUPERFAMILY SSF54690 17 147 3.66E-43 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT55_RS20835 77cfb609f3978f48fce42bf8f793db9d 186 PIRSF PIRSF018957 1 180 1.3E-61 T 06-07-2017 IPR008307 Uncharacterised conserved protein UCP018957 APT55_RS20835 77cfb609f3978f48fce42bf8f793db9d 186 Pfam PF08819 Domain of unknown function (DUF1802) 4 173 9.0E-65 T 06-07-2017 IPR014923 Protein of unknown function DUF1802 APT55_RS19715 61d4b8be521045aebc5e4b914d64d8b1 504 Gene3D G3DSA:3.90.550.10 94 301 6.4E-21 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS19715 61d4b8be521045aebc5e4b914d64d8b1 504 SUPERFAMILY SSF53448 89 352 3.24E-36 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS19715 61d4b8be521045aebc5e4b914d64d8b1 504 Pfam PF00535 Glycosyl transferase family 2 98 264 1.9E-24 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS09995 a41a42a8361d6a873e353e9daf4729de 322 SUPERFAMILY SSF109604 36 199 4.6E-7 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 TIGRFAM TIGR01960 ndhF3_CO2: NAD(P)H dehydrogenase, subunit NdhF3 family 1 605 7.3E-295 T 06-07-2017 IPR010217 NAD(P)H dehydrogenase, subunit NdhF3 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 6.0E-27 T 06-07-2017 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 Pfam PF00361 Proton-conducting membrane transporter 139 422 3.6E-54 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05735 d464c4f3b584adfb92cacda6dba430f1 611 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 72 126 1.0E-13 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05800 08f4fff17f6c0f75bae3447c27e34a5f 89 SUPERFAMILY SSF143011 2 84 1.83E-12 T 06-07-2017 APT55_RS05800 08f4fff17f6c0f75bae3447c27e34a5f 89 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 85 2.9E-7 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS30275 b456372d0889b2a9eed9c1d1dd37b88a 142 SUPERFAMILY SSF54593 8 129 4.19E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS30275 b456372d0889b2a9eed9c1d1dd37b88a 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 124 3.9E-5 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS30275 b456372d0889b2a9eed9c1d1dd37b88a 142 Gene3D G3DSA:3.10.180.10 3 125 7.4E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS23985 dd56877d9ef7d9208c290944f50ce529 460 Pfam PF14233 Domain of unknown function (DUF4335) 9 202 1.1E-51 T 06-07-2017 IPR025569 Protein of unknown function DUF4335 APT55_RS30635 34e07b9df3893fbcf48a2b2c197e4ac2 557 Pfam PF01103 Surface antigen 241 551 1.4E-17 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 APT55_RS30635 34e07b9df3893fbcf48a2b2c197e4ac2 557 Gene3D G3DSA:3.10.20.310 57 119 1.5E-11 T 06-07-2017 APT55_RS30635 34e07b9df3893fbcf48a2b2c197e4ac2 557 Gene3D G3DSA:2.40.160.50 177 555 1.1E-54 T 06-07-2017 APT55_RS30635 34e07b9df3893fbcf48a2b2c197e4ac2 557 Pfam PF08479 POTRA domain, ShlB-type 60 139 9.6E-13 T 06-07-2017 IPR013686 Polypeptide-transport-associated, ShlB-type APT55_RS22130 e02dc38b7bc6e143f794f9e155cb069b 296 TIGRFAM TIGR04052 AZL_007920_fam: AZL_007920/MXAN_0976 family protein 62 280 1.7E-77 T 06-07-2017 IPR023977 Conserved hypotheical protein CHP04052 APT55_RS08275 8e01a5873b93577213158181af686e71 104 Pfam PF11282 Protein of unknown function (DUF3082) 15 95 1.1E-30 T 06-07-2017 IPR021434 Protein of unknown function DUF3082 APT55_RS19470 759029249e7817d717c617a541f928e1 186 Gene3D G3DSA:1.10.260.40 22 52 0.001 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS24045 800cb55feda5c665d1817d9dd1eb4880 478 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 12 469 5.8E-205 T 06-07-2017 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 APT55_RS24045 800cb55feda5c665d1817d9dd1eb4880 478 SUPERFAMILY SSF101960 33 475 1.31E-142 T 06-07-2017 APT55_RS24045 800cb55feda5c665d1817d9dd1eb4880 478 Pfam PF01458 Uncharacterized protein family (UPF0051) 216 449 4.1E-68 T 06-07-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 SUPERFAMILY SSF103473 8 200 1.96E-61 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 SUPERFAMILY SSF103473 255 426 1.96E-61 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 SUPERFAMILY SSF103473 485 511 1.96E-61 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 508 6.9E-129 T 06-07-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 Gene3D G3DSA:1.20.1250.20 270 432 1.7E-19 T 06-07-2017 APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 Gene3D G3DSA:1.20.1250.20 491 512 1.7E-19 T 06-07-2017 APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 Gene3D G3DSA:1.20.1250.20 16 203 1.2E-25 T 06-07-2017 APT55_RS01470 5ef33a6169f16f8cbc4a423f68876b43 521 Pfam PF07690 Major Facilitator Superfamily 23 416 2.1E-46 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS27545 0236f1cca916f06828cad226eef7b5bf 463 Pfam PF02371 Transposase IS116/IS110/IS902 family 303 383 7.6E-14 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 APT55_RS27545 0236f1cca916f06828cad226eef7b5bf 463 Pfam PF01548 Transposase 29 171 2.4E-15 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS25415 2ff6d55f1397295e231537a149e87e51 499 SUPERFAMILY SSF160387 397 491 7.06E-12 T 06-07-2017 APT55_RS25415 2ff6d55f1397295e231537a149e87e51 499 Pfam PF13379 NMT1-like family 65 287 2.0E-16 T 06-07-2017 APT55_RS25415 2ff6d55f1397295e231537a149e87e51 499 Gene3D G3DSA:3.40.190.10 260 305 1.1E-4 T 06-07-2017 APT55_RS25415 2ff6d55f1397295e231537a149e87e51 499 SUPERFAMILY SSF53850 80 346 1.67E-39 T 06-07-2017 APT55_RS25415 2ff6d55f1397295e231537a149e87e51 499 Gene3D G3DSA:3.40.190.10 149 259 2.0E-19 T 06-07-2017 APT55_RS00945 7bf5258c60869f9334b47146b4182ecf 392 Pfam PF00999 Sodium/hydrogen exchanger family 21 383 1.1E-41 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS06775 d2bfc852cf332734fa4dbb61b16b7121 39 Pfam PF01788 PsbJ 4 39 5.5E-20 T 06-07-2017 IPR002682 Photosystem II PsbJ GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS06775 d2bfc852cf332734fa4dbb61b16b7121 39 SUPERFAMILY SSF161021 6 39 4.45E-13 T 06-07-2017 APT55_RS06775 d2bfc852cf332734fa4dbb61b16b7121 39 ProDom PD003776 II PHOTOSYSTEM REACTION CENTER J CHLOROPLAST PLASTID MEMBRANE TRANSMEMBRANE PHOTOSYNTHESIS 6 37 2.0E-6 T 06-07-2017 APT55_RS06775 d2bfc852cf332734fa4dbb61b16b7121 39 Hamap MF_01305 Photosystem II reaction center protein J [psbJ]. 1 39 15.108 T 06-07-2017 IPR002682 Photosystem II PsbJ GO:0009523|GO:0009539|GO:0015979|GO:0016020 APT55_RS29005 1b51f29a59a8f3dd84d021059b14fb3a 578 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 574 30.995 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT55_RS29005 1b51f29a59a8f3dd84d021059b14fb3a 578 Pfam PF03814 Potassium-transporting ATPase A subunit 10 572 4.5E-216 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT55_RS29005 1b51f29a59a8f3dd84d021059b14fb3a 578 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 573 4.4E-222 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT55_RS29005 1b51f29a59a8f3dd84d021059b14fb3a 578 PIRSF PIRSF001294 1 576 3.0E-214 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT55_RS21960 83d9ed0dba69f358b2ccedd5cf418698 489 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 53 436 1.1E-73 T 06-07-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APT55_RS21960 83d9ed0dba69f358b2ccedd5cf418698 489 Gene3D G3DSA:3.60.110.10 211 468 4.8E-30 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21960 83d9ed0dba69f358b2ccedd5cf418698 489 SUPERFAMILY SSF56317 216 468 2.09E-42 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21960 83d9ed0dba69f358b2ccedd5cf418698 489 Pfam PF00795 Carbon-nitrogen hydrolase 220 441 5.1E-18 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 APT55_RS21960 83d9ed0dba69f358b2ccedd5cf418698 489 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 3 474 17.887 T 06-07-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APT55_RS24860 bdc402828a958170531642762741bd16 534 Pfam PF05731 TROVE domain 232 364 2.0E-22 T 06-07-2017 IPR008858 TROVE domain GO:0003723 APT55_RS24860 bdc402828a958170531642762741bd16 534 Pfam PF05731 TROVE domain 28 197 8.3E-20 T 06-07-2017 IPR008858 TROVE domain GO:0003723 APT55_RS24860 bdc402828a958170531642762741bd16 534 SUPERFAMILY SSF140864 13 357 1.57E-105 T 06-07-2017 APT55_RS24860 bdc402828a958170531642762741bd16 534 Gene3D G3DSA:1.25.40.10 48 92 5.9E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24860 bdc402828a958170531642762741bd16 534 SUPERFAMILY SSF53300 359 532 1.78E-43 T 06-07-2017 IPR002035 von Willebrand factor, type A APT55_RS06955 f50eefbec5c37d3fe07d7224040b5288 131 Hamap MF_00262 Cell division topological specificity factor [minE]. 2 94 14.723 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 APT55_RS06955 f50eefbec5c37d3fe07d7224040b5288 131 Pfam PF03776 Septum formation topological specificity factor MinE 17 82 4.6E-19 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 APT55_RS06955 f50eefbec5c37d3fe07d7224040b5288 131 Gene3D G3DSA:3.30.1070.10 33 85 7.0E-15 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 APT55_RS06955 f50eefbec5c37d3fe07d7224040b5288 131 SUPERFAMILY SSF55229 33 84 1.44E-10 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 APT55_RS06955 f50eefbec5c37d3fe07d7224040b5288 131 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 4 83 3.8E-23 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 APT55_RS17310 583e18807aad3d391ad343b937425883 128 SUPERFAMILY SSF88723 1 128 2.05E-18 T 06-07-2017 IPR029060 PIN domain-like APT55_RS17310 583e18807aad3d391ad343b937425883 128 Pfam PF01850 PIN domain 4 117 2.3E-10 T 06-07-2017 IPR002716 PIN domain APT55_RS28180 aad43e8984055cc8dc2bb38c67a2fe19 199 Pfam PF01292 Prokaryotic cytochrome b561 16 198 5.2E-19 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT55_RS28180 aad43e8984055cc8dc2bb38c67a2fe19 199 SUPERFAMILY SSF81342 16 198 1.33E-24 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS28180 aad43e8984055cc8dc2bb38c67a2fe19 199 Gene3D G3DSA:1.20.950.20 17 198 6.2E-24 T 06-07-2017 APT55_RS13465 a99385420ad9059198c967d837ada5c7 172 Pfam PF00502 Phycobilisome protein 7 170 2.8E-58 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13465 a99385420ad9059198c967d837ada5c7 172 TIGRFAM TIGR01339 phycocy_beta: phycocyanin, beta subunit 3 171 1.6E-96 T 06-07-2017 IPR006247 Phycocyanin, beta subunit GO:0015979|GO:0030089 APT55_RS13465 a99385420ad9059198c967d837ada5c7 172 Gene3D G3DSA:1.10.490.20 1 170 1.3E-68 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS13465 a99385420ad9059198c967d837ada5c7 172 SUPERFAMILY SSF46458 1 171 1.63E-60 T 06-07-2017 IPR009050 Globin-like APT55_RS13465 a99385420ad9059198c967d837ada5c7 172 PIRSF PIRSF000081 1 172 8.9E-63 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS17430 61b9a00cff47bf9405276a0f088352a3 86 Gene3D G3DSA:3.30.1230.10 5 81 4.1E-18 T 06-07-2017 IPR007393 Domain of unknown function DUF448 APT55_RS17430 61b9a00cff47bf9405276a0f088352a3 86 Pfam PF04296 Protein of unknown function (DUF448) 6 77 2.3E-21 T 06-07-2017 IPR007393 Domain of unknown function DUF448 APT55_RS17430 61b9a00cff47bf9405276a0f088352a3 86 SUPERFAMILY SSF64376 3 80 1.7E-19 T 06-07-2017 IPR007393 Domain of unknown function DUF448 APT55_RS03635 19ef6ff1f5eea5df713e5d26ef2fd01f 349 Pfam PF01594 Domain of unknown function DUF20 23 341 3.7E-54 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS08685 9fd4bbb803e949f138202dc1c5ee5473 215 Pfam PF11152 Protein of unknown function (DUF2930) 13 206 2.0E-83 T 06-07-2017 IPR021325 Cofactor assembly of complex C subunit B, CCB2/CCB4 APT55_RS08685 9fd4bbb803e949f138202dc1c5ee5473 215 SUPERFAMILY SSF55781 95 211 9.81E-5 T 06-07-2017 IPR029016 GAF domain-like APT55_RS08685 9fd4bbb803e949f138202dc1c5ee5473 215 Gene3D G3DSA:3.30.450.40 129 210 9.4E-6 T 06-07-2017 IPR029016 GAF domain-like APT55_RS12995 07404610a262881d896b546e0bd9bb43 293 Pfam PF09234 Domain of unknown function (DUF1963) 49 292 5.9E-47 T 06-07-2017 IPR015315 Protein of unknown function DUF1963 APT55_RS12995 07404610a262881d896b546e0bd9bb43 293 SUPERFAMILY SSF103032 19 292 1.24E-50 T 06-07-2017 IPR015315 Protein of unknown function DUF1963 APT55_RS12995 07404610a262881d896b546e0bd9bb43 293 Gene3D G3DSA:2.30.320.10 13 293 7.1E-56 T 06-07-2017 IPR015315 Protein of unknown function DUF1963 APT55_RS07530 01849ee10f2f3c7b3242eeadcc04f90d 140 Gene3D G3DSA:3.40.50.1010 1 139 2.4E-16 T 06-07-2017 IPR029060 PIN domain-like APT55_RS07530 01849ee10f2f3c7b3242eeadcc04f90d 140 SUPERFAMILY SSF88723 1 138 2.47E-17 T 06-07-2017 IPR029060 PIN domain-like APT55_RS05080 23590176c60777576c949dd89222740f 139 Pfam PF08814 XisH protein 1 135 2.5E-53 T 06-07-2017 IPR014919 XisH protein APT55_RS05080 23590176c60777576c949dd89222740f 139 SUPERFAMILY SSF52980 4 139 2.95E-50 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS05080 23590176c60777576c949dd89222740f 139 Gene3D G3DSA:3.40.1350.10 1 139 2.4E-55 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS11805 ede222e0ff6ea1445e37c2acb521d2b0 173 Pfam PF14026 Protein of unknown function (DUF4242) 97 166 2.7E-8 T 06-07-2017 IPR025336 Protein of unknown function DUF4242 APT55_RS11805 ede222e0ff6ea1445e37c2acb521d2b0 173 Pfam PF14026 Protein of unknown function (DUF4242) 5 73 1.9E-9 T 06-07-2017 IPR025336 Protein of unknown function DUF4242 APT55_RS02245 bcf2c1cce5d532254b1ba6a0d05a28e9 410 SUPERFAMILY SSF53756 19 311 5.9E-9 T 06-07-2017 APT55_RS02245 bcf2c1cce5d532254b1ba6a0d05a28e9 410 SUPERFAMILY SSF53756 355 403 5.9E-9 T 06-07-2017 APT55_RS08940 532782447afbef4d65be104f1fc128bd 280 Pfam PF03747 ADP-ribosylglycohydrolase 65 234 6.8E-9 T 06-07-2017 IPR005502 ADP-ribosylation/Crystallin J1 APT55_RS08940 532782447afbef4d65be104f1fc128bd 280 SUPERFAMILY SSF101478 6 257 1.57E-18 T 06-07-2017 IPR005502 ADP-ribosylation/Crystallin J1 APT55_RS27840 e31565fecd1f1af8517343436f3d8c84 408 Pfam PF13439 Glycosyltransferase Family 4 15 211 2.3E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS27840 e31565fecd1f1af8517343436f3d8c84 408 Pfam PF00534 Glycosyl transferases group 1 243 381 4.5E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS27840 e31565fecd1f1af8517343436f3d8c84 408 Gene3D G3DSA:3.40.50.2000 201 382 4.0E-26 T 06-07-2017 APT55_RS27840 e31565fecd1f1af8517343436f3d8c84 408 SUPERFAMILY SSF53756 3 406 5.1E-59 T 06-07-2017 APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 Pfam PF00805 Pentapeptide repeats (8 copies) 167 204 2.0E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 Pfam PF00805 Pentapeptide repeats (8 copies) 125 164 1.3E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 Pfam PF00805 Pentapeptide repeats (8 copies) 226 253 8.3E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 Pfam PF13599 Pentapeptide repeats (9 copies) 30 101 2.6E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 Gene3D G3DSA:3.80.10.10 55 236 3.1E-4 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 SUPERFAMILY SSF141571 120 266 4.45E-39 T 06-07-2017 APT55_RS03415 7720ee92ae20ed181e2dd20c0372bc33 494 SUPERFAMILY SSF141571 14 157 2.55E-36 T 06-07-2017 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 447 6.0E-159 T 06-07-2017 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 SUPERFAMILY SSF51445 3 452 5.52E-148 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 Gene3D G3DSA:3.20.20.80 2 452 2.7E-152 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 06-07-2017 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 Pfam PF00232 Glycosyl hydrolase family 1 3 455 3.2E-143 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 PRINTS PR00131 Glycosyl hydrolase family 1 signature 359 367 1.9E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 PRINTS PR00131 Glycosyl hydrolase family 1 signature 294 308 1.9E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 PRINTS PR00131 Glycosyl hydrolase family 1 signature 425 437 1.9E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 PRINTS PR00131 Glycosyl hydrolase family 1 signature 380 391 1.9E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS09355 8096ea8c95689be77850e3eb00119382 457 PRINTS PR00131 Glycosyl hydrolase family 1 signature 401 418 1.9E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 APT55_RS27070 05af328baff3812ca7cd36cc586418d7 366 Pfam PF13692 Glycosyl transferases group 1 239 317 7.5E-11 T 06-07-2017 APT55_RS27070 05af328baff3812ca7cd36cc586418d7 366 Gene3D G3DSA:3.40.50.2000 235 329 1.5E-7 T 06-07-2017 APT55_RS27070 05af328baff3812ca7cd36cc586418d7 366 SUPERFAMILY SSF53756 22 349 4.81E-28 T 06-07-2017 APT55_RS25950 2edc976f7f75f40735a2446a6f0f03b5 496 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 164 360 2.3E-26 T 06-07-2017 IPR004299 Membrane bound O-acyl transferase, MBOAT APT55_RS25950 2edc976f7f75f40735a2446a6f0f03b5 496 PIRSF PIRSF500217 1 496 1.0E-138 T 06-07-2017 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 APT55_RS25950 2edc976f7f75f40735a2446a6f0f03b5 496 PIRSF PIRSF016636 1 496 8.6E-134 T 06-07-2017 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB APT55_RS29635 535770fad7c889aebfe4d1d4a4703fe8 120 SUPERFAMILY SSF47413 6 75 8.73E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS29635 535770fad7c889aebfe4d1d4a4703fe8 120 Gene3D G3DSA:1.10.260.40 7 71 3.8E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS20945 160e2a811ef9d4517bf840f8a284b407 990 SUPERFAMILY SSF52266 641 743 7.61E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS20945 160e2a811ef9d4517bf840f8a284b407 990 SUPERFAMILY SSF52266 889 981 7.61E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS20945 160e2a811ef9d4517bf840f8a284b407 990 Gene3D G3DSA:3.40.50.1110 891 981 2.7E-9 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS20945 160e2a811ef9d4517bf840f8a284b407 990 Gene3D G3DSA:3.40.50.1110 658 745 2.7E-9 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS14390 fc257963573a67cdc6e37d5b97481dab 130 SUPERFAMILY SSF52172 1 120 9.11E-43 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS14390 fc257963573a67cdc6e37d5b97481dab 130 Gene3D G3DSA:3.40.50.2300 1 121 3.1E-42 T 06-07-2017 APT55_RS14390 fc257963573a67cdc6e37d5b97481dab 130 Pfam PF00072 Response regulator receiver domain 4 113 1.4E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS14390 fc257963573a67cdc6e37d5b97481dab 130 SMART SM00448 2 112 8.3E-45 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS11845 8be7988d964cba8d3443a22d0511f183 271 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 246 271 2.6E-6 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS11845 8be7988d964cba8d3443a22d0511f183 271 TIGRFAM TIGR04155 cyano_PEP: PEP-CTERM protein sorting domain, cyanobacterial subclass 246 271 1.2E-6 T 06-07-2017 IPR026374 PEP-CTERM protein sorting domain, cyanobacterial subclass APT55_RS01415 2c8a2eb80f409014d7cb9a2dedfb411a 382 Pfam PF03739 Predicted permease YjgP/YjgQ family 15 379 3.8E-87 T 06-07-2017 IPR005495 Permease LptG/LptF-related GO:0016021 APT55_RS06000 9771620d8429da1413b2b4479a68d60a 457 Pfam PF05869 DNA N-6-adenine-methyltransferase (Dam) 289 429 1.5E-24 T 06-07-2017 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 APT55_RS21950 c88fc69de113553fdbb55ef7aa0ac5c9 360 Gene3D G3DSA:1.10.540.10 5 112 2.9E-15 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS21950 c88fc69de113553fdbb55ef7aa0ac5c9 360 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 111 8.3E-10 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 APT55_RS21950 c88fc69de113553fdbb55ef7aa0ac5c9 360 Gene3D G3DSA:1.20.140.10 292 344 6.6E-4 T 06-07-2017 APT55_RS21950 c88fc69de113553fdbb55ef7aa0ac5c9 360 SUPERFAMILY SSF56645 5 204 1.41E-21 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 APT55_RS09365 3043b7af92b031b6d8603e81e039e3ca 317 SUPERFAMILY SSF54791 22 70 2.53E-5 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 APT55_RS09365 3043b7af92b031b6d8603e81e039e3ca 317 Pfam PF02562 PhoH-like protein 110 313 8.0E-94 T 06-07-2017 IPR003714 PhoH-like protein GO:0005524 APT55_RS09365 3043b7af92b031b6d8603e81e039e3ca 317 Gene3D G3DSA:3.40.50.300 109 313 4.8E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09365 3043b7af92b031b6d8603e81e039e3ca 317 SUPERFAMILY SSF52540 114 275 1.01E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06610 6bef0bd174cb43b084ff24e8bd893c64 169 Pfam PF03734 L,D-transpeptidase catalytic domain 45 167 2.3E-22 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 APT55_RS06610 6bef0bd174cb43b084ff24e8bd893c64 169 Gene3D G3DSA:2.40.440.10 43 167 4.1E-36 T 06-07-2017 APT55_RS06610 6bef0bd174cb43b084ff24e8bd893c64 169 SUPERFAMILY SSF141523 44 167 7.46E-33 T 06-07-2017 APT55_RS15400 4bf99282caa20675a7135d3ff8952ef8 103 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 31 97 2.7E-12 T 06-07-2017 IPR008792 Coenzyme PQQ synthesis D APT55_RS24685 90257e9acd639425579b624d5b965fb9 172 Gene3D G3DSA:3.40.50.1010 2 164 7.9E-46 T 06-07-2017 IPR029060 PIN domain-like APT55_RS24685 90257e9acd639425579b624d5b965fb9 172 Pfam PF01936 NYN domain 7 160 8.8E-34 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS27365 304a1f9f36929674d27f6bf371bd802e 248 Gene3D G3DSA:3.30.2010.10 52 134 3.6E-21 T 06-07-2017 APT55_RS27365 304a1f9f36929674d27f6bf371bd802e 248 Pfam PF01435 Peptidase family M48 55 225 5.6E-30 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS31690 36c97b638ab9079151110ab2c3f1c5aa 270 SUPERFAMILY SSF52540 6 103 3.23E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31690 36c97b638ab9079151110ab2c3f1c5aa 270 Gene3D G3DSA:3.40.50.300 10 116 1.9E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04460 4b2d334dac3060dcabe792a62963a594 308 Pfam PF00487 Fatty acid desaturase 58 297 3.9E-37 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS03675 962e39b46f31be6e655123a3221b59db 202 Pfam PF00805 Pentapeptide repeats (8 copies) 133 170 2.5E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03675 962e39b46f31be6e655123a3221b59db 202 Pfam PF00805 Pentapeptide repeats (8 copies) 64 100 2.0E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS03675 962e39b46f31be6e655123a3221b59db 202 SUPERFAMILY SSF141571 29 195 7.3E-41 T 06-07-2017 APT55_RS11685 48b85fe4aaa7041ee9e4fcb5b95cfeb9 106 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 3 104 23.861 T 06-07-2017 IPR004893 Nitrogen fixation protein NifW GO:0009399 APT55_RS11685 48b85fe4aaa7041ee9e4fcb5b95cfeb9 106 PIRSF PIRSF005790 1 106 2.2E-35 T 06-07-2017 IPR004893 Nitrogen fixation protein NifW GO:0009399 APT55_RS11685 48b85fe4aaa7041ee9e4fcb5b95cfeb9 106 Pfam PF03206 Nitrogen fixation protein NifW 6 103 5.8E-33 T 06-07-2017 IPR004893 Nitrogen fixation protein NifW GO:0009399 APT55_RS17730 d0b3f82d4dd188f69824d046dfb51176 232 Pfam PF00005 ABC transporter 17 162 3.5E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS17730 d0b3f82d4dd188f69824d046dfb51176 232 Gene3D G3DSA:3.40.50.300 1 224 3.9E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17730 d0b3f82d4dd188f69824d046dfb51176 232 SUPERFAMILY SSF52540 2 224 2.02E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17730 d0b3f82d4dd188f69824d046dfb51176 232 SMART SM00382 26 201 1.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS17730 d0b3f82d4dd188f69824d046dfb51176 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 2.6E-99 T 06-07-2017 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE APT55_RS17075 5ed4f50da73abab0c42afa9ba12eb234 284 SUPERFAMILY SSF53335 72 257 1.79E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17075 5ed4f50da73abab0c42afa9ba12eb234 284 Gene3D G3DSA:3.40.50.150 72 252 3.4E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17075 5ed4f50da73abab0c42afa9ba12eb234 284 Pfam PF13649 Methyltransferase domain 104 200 1.7E-24 T 06-07-2017 APT55_RS08105 f982d3df4f18016e29a7f4d5fc6c6e08 300 Gene3D G3DSA:1.10.3720.10 94 291 3.2E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08105 f982d3df4f18016e29a7f4d5fc6c6e08 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 291 8.3E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08105 f982d3df4f18016e29a7f4d5fc6c6e08 300 SUPERFAMILY SSF161098 99 282 1.44E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS07800 3092aff7c4decf338a029f2373f93708 192 SUPERFAMILY SSF52980 17 165 3.7E-8 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS07800 3092aff7c4decf338a029f2373f93708 192 Pfam PF05685 Putative restriction endonuclease 20 156 1.1E-11 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS17650 a5bc2f7923293802f31d30b9602115c8 69 SUPERFAMILY SSF143100 2 50 1.44E-11 T 06-07-2017 APT55_RS28730 6534480bd9aebea4e192dd7ffacdf626 210 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 28.419 T 06-07-2017 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 APT55_RS28730 6534480bd9aebea4e192dd7ffacdf626 210 Gene3D G3DSA:3.40.50.360 1 208 1.5E-59 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS28730 6534480bd9aebea4e192dd7ffacdf626 210 Pfam PF02525 Flavodoxin-like fold 3 206 4.8E-44 T 06-07-2017 IPR003680 Flavodoxin-like fold APT55_RS28730 6534480bd9aebea4e192dd7ffacdf626 210 SUPERFAMILY SSF52218 1 208 7.21E-45 T 06-07-2017 IPR029039 Flavoprotein-like domain APT55_RS05675 e4464869acd12b48e852f9cdc4258060 122 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 5 119 1.5E-55 T 06-07-2017 IPR018714 Protein of unknown function DUF2237 APT55_RS22230 fe2459561980759a3fa1ef009b430d35 128 Pfam PF13359 DDE superfamily endonuclease 2 121 1.0E-19 T 06-07-2017 IPR027806 Harbinger transposase-derived nuclease domain APT55_RS02160 a3e38f8a53d132cdc4c4e48442f57a5b 359 SUPERFAMILY SSF51395 1 356 1.04E-118 T 06-07-2017 APT55_RS02160 a3e38f8a53d132cdc4c4e48442f57a5b 359 Gene3D G3DSA:3.20.20.70 2 356 1.9E-131 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS02160 a3e38f8a53d132cdc4c4e48442f57a5b 359 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 335 8.2E-82 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APT55_RS31560 0dd47a3abee2cac32175181f22a7f817 75 Pfam PF13560 Helix-turn-helix domain 12 68 1.1E-11 T 06-07-2017 APT55_RS31560 0dd47a3abee2cac32175181f22a7f817 75 SUPERFAMILY SSF47413 8 68 5.38E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS31560 0dd47a3abee2cac32175181f22a7f817 75 SMART SM00530 10 67 8.1E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS31560 0dd47a3abee2cac32175181f22a7f817 75 Gene3D G3DSA:1.10.260.40 11 68 2.2E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS07755 c1c5317309824e4aea7768ac76db8ab9 348 SUPERFAMILY SSF53335 118 320 3.62E-42 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07755 c1c5317309824e4aea7768ac76db8ab9 348 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 151 293 1.2E-31 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS07755 c1c5317309824e4aea7768ac76db8ab9 348 Gene3D G3DSA:3.40.50.150 140 325 6.4E-39 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS07755 c1c5317309824e4aea7768ac76db8ab9 348 Pfam PF05050 Methyltransferase FkbM domain 154 317 5.3E-17 T 06-07-2017 IPR006342 Methyltransferase FkbM APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 38 55 - T 06-07-2017 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PIRSF PIRSF001467 1 144 1.6E-40 T 06-07-2017 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5 135 2.5E-42 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 SUPERFAMILY SSF50891 3 136 1.75E-47 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 3.5E-24 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 115 3.5E-24 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 55 3.5E-24 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 17 32 3.5E-24 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 3.5E-24 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 APT55_RS22355 25337e0dcd8e3cc548207523ba8a7632 146 Gene3D G3DSA:2.40.100.10 3 135 4.0E-49 T 06-07-2017 IPR029000 Cyclophilin-like domain APT55_RS02480 d85b5936545cc36c3b4810a8db105eb9 74 SUPERFAMILY SSF46689 1 68 1.31E-25 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS02480 d85b5936545cc36c3b4810a8db105eb9 74 Gene3D G3DSA:1.10.10.10 7 68 1.6E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02480 d85b5936545cc36c3b4810a8db105eb9 74 Pfam PF04255 Protein of unknown function (DUF433) 7 62 2.1E-27 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 SUPERFAMILY SSF81324 21 221 1.06E-34 T 06-07-2017 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 PRINTS PR00169 Potassium channel signature 196 222 7.9E-11 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 PRINTS PR00169 Potassium channel signature 55 78 7.9E-11 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 PRINTS PR00169 Potassium channel signature 167 189 7.9E-11 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 PRINTS PR00169 Potassium channel signature 14 42 7.9E-11 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 PRINTS PR00169 Potassium channel signature 81 101 7.9E-11 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 Gene3D G3DSA:1.10.287.70 24 222 8.9E-38 T 06-07-2017 APT55_RS25695 1c063011cc89486a11f9ba88f299a238 262 Pfam PF00520 Ion transport protein 23 211 3.6E-21 T 06-07-2017 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 APT55_RS16715 5ea71aa00a66794ec0e02010e8a19279 208 SUPERFAMILY SSF52200 7 110 3.27E-21 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16715 5ea71aa00a66794ec0e02010e8a19279 208 SMART SM00255 16 171 2.0E-7 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16715 5ea71aa00a66794ec0e02010e8a19279 208 Pfam PF13676 TIR domain 19 108 3.5E-12 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS16715 5ea71aa00a66794ec0e02010e8a19279 208 Gene3D G3DSA:3.40.50.10140 13 106 3.3E-16 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS00515 0de5a4211db305d7e354a2bbf07de51b 171 Pfam PF03734 L,D-transpeptidase catalytic domain 46 169 1.5E-25 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 APT55_RS00515 0de5a4211db305d7e354a2bbf07de51b 171 Gene3D G3DSA:2.40.440.10 39 170 1.1E-39 T 06-07-2017 APT55_RS00515 0de5a4211db305d7e354a2bbf07de51b 171 SUPERFAMILY SSF141523 42 169 2.09E-37 T 06-07-2017 APT55_RS02910 b65920cd67c23b420e1198d058acd1af 218 Pfam PF03596 Cadmium resistance transporter 17 216 3.6E-25 T 06-07-2017 IPR004676 Cadmium resistance transporter APT55_RS09025 3afdef7799054183fae7ff4bb9a4fe16 95 Pfam PF06967 Mo-dependent nitrogenase C-terminus 13 95 1.4E-42 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS02990 a9fcfae1e48ddf7ebc51c382340a90fb 427 SUPERFAMILY SSF48452 152 262 5.12E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS02990 a9fcfae1e48ddf7ebc51c382340a90fb 427 Gene3D G3DSA:1.25.40.10 38 262 1.6E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS15310 378efe6691c94bf3d47bec8391cd1e39 180 Pfam PF00578 AhpC/TSA family 37 158 2.2E-37 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS15310 378efe6691c94bf3d47bec8391cd1e39 180 SUPERFAMILY SSF52833 34 180 2.42E-49 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS15310 378efe6691c94bf3d47bec8391cd1e39 180 Gene3D G3DSA:3.40.30.10 28 180 6.1E-51 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS23445 183d124e24dedb9f0bd5e3f68efa35d3 215 Gene3D G3DSA:3.40.50.2020 46 211 7.1E-27 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS23445 183d124e24dedb9f0bd5e3f68efa35d3 215 SUPERFAMILY SSF53271 45 211 2.76E-23 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like APT55_RS15940 4696bf105a1b9ce8279f09c1f91e38fc 344 SUPERFAMILY SSF53067 182 335 7.34E-8 T 06-07-2017 APT55_RS15940 4696bf105a1b9ce8279f09c1f91e38fc 344 SUPERFAMILY SSF53067 19 175 1.15E-6 T 06-07-2017 APT55_RS16800 d3414e2002642e19ab49d19849aa3af7 221 SMART SM00240 136 193 2.7E-11 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS16800 d3414e2002642e19ab49d19849aa3af7 221 Pfam PF12773 Double zinc ribbon 4 49 2.1E-11 T 06-07-2017 IPR025874 Double zinc ribbon APT55_RS16800 d3414e2002642e19ab49d19849aa3af7 221 Pfam PF00498 FHA domain 149 210 2.5E-16 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS16800 d3414e2002642e19ab49d19849aa3af7 221 SUPERFAMILY SSF49879 85 217 4.97E-23 T 06-07-2017 IPR008984 SMAD/FHA domain GO:0005515 APT55_RS16800 d3414e2002642e19ab49d19849aa3af7 221 Gene3D G3DSA:2.60.200.20 133 211 2.6E-19 T 06-07-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 487 507 2.7E-6 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 402 420 2.7E-6 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 545 560 2.7E-6 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 429 453 2.7E-6 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 SUPERFAMILY SSF82171 40 360 7.45E-33 T 06-07-2017 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 91 345 4.7E-8 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 Gene3D G3DSA:3.40.50.1820 292 617 2.1E-80 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 SUPERFAMILY SSF53474 373 628 7.1E-62 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 Pfam PF00326 Prolyl oligopeptidase family 424 628 3.1E-39 T 06-07-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT55_RS17290 ab6617ac7a07e53c1681b515ba411e35 630 Gene3D G3DSA:2.120.10.60 35 291 6.6E-27 T 06-07-2017 APT55_RS05350 7692662f2fbc042548688181a560f1eb 257 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 18 214 2.7E-46 T 06-07-2017 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 APT55_RS05350 7692662f2fbc042548688181a560f1eb 257 Pfam PF02361 Cobalt transport protein 12 223 3.5E-34 T 06-07-2017 IPR003339 ABC/ECF transporter, transmembrane component APT55_RS08325 8f3eaf1ef7d8a80fb266b1678db5358f 156 SUPERFAMILY SSF49764 14 136 6.7E-33 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS08325 8f3eaf1ef7d8a80fb266b1678db5358f 156 Gene3D G3DSA:2.60.40.790 2 135 1.5E-34 T 06-07-2017 IPR008978 HSP20-like chaperone APT55_RS08325 8f3eaf1ef7d8a80fb266b1678db5358f 156 Pfam PF00011 Hsp20/alpha crystallin family 42 134 8.8E-21 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain APT55_RS19150 82743cbc9a6096fb80cf9735bf3d46aa 264 Pfam PF11209 Protein of unknown function (DUF2993) 16 253 2.3E-32 T 06-07-2017 IPR021373 Protein of unknown function DUF2993 APT55_RS14115 e600dd6a672f93066f76cac5e0f41204 393 Pfam PF01139 tRNA-splicing ligase RtcB 29 393 3.5E-145 T 06-07-2017 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT55_RS14115 e600dd6a672f93066f76cac5e0f41204 393 SUPERFAMILY SSF103365 21 393 1.22E-126 T 06-07-2017 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT55_RS29095 e9e2583beafba954dd73fcca22ded6be 86 SUPERFAMILY SSF46689 4 66 5.38E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS29095 e9e2583beafba954dd73fcca22ded6be 86 Pfam PF13565 Homeodomain-like domain 5 62 2.0E-8 T 06-07-2017 APT55_RS09705 6e1017572aec235d901ccb9cf21255f8 208 SUPERFAMILY SSF53335 6 194 3.95E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09705 6e1017572aec235d901ccb9cf21255f8 208 Pfam PF13649 Methyltransferase domain 49 139 1.1E-22 T 06-07-2017 APT55_RS09705 6e1017572aec235d901ccb9cf21255f8 208 Gene3D G3DSA:3.40.50.150 33 193 7.1E-34 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24290 9f0769d46865e8e2a02aad312ca834e3 155 Pfam PF13581 Histidine kinase-like ATPase domain 19 150 7.9E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS24290 9f0769d46865e8e2a02aad312ca834e3 155 SUPERFAMILY SSF55874 26 107 6.96E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS13195 37c5741dd353cd0c2f590beb5c7946d6 356 Pfam PF03016 Exostosin family 157 281 1.1E-7 T 06-07-2017 IPR004263 Exostosin-like APT55_RS08030 14736e1d0bbcf1aa183088d6b6737d49 66 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 5 47 1.6E-7 T 06-07-2017 IPR019239 Bacterial antitoxin of type II TA system, VapB APT55_RS02330 a3882c9bac8dbbbcd77604e5dc5608e1 128 Pfam PF00072 Response regulator receiver domain 5 117 4.5E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02330 a3882c9bac8dbbbcd77604e5dc5608e1 128 SMART SM00448 3 117 4.2E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02330 a3882c9bac8dbbbcd77604e5dc5608e1 128 SUPERFAMILY SSF52172 3 122 1.24E-32 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02330 a3882c9bac8dbbbcd77604e5dc5608e1 128 Gene3D G3DSA:3.40.50.2300 2 121 2.4E-33 T 06-07-2017 APT55_RS13315 bca9a3a53618f8d9eb2a86a0185bdf89 429 Pfam PF04932 O-Antigen ligase 197 341 6.4E-20 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS20500 2e129f243b9ba20abbef8b229e7ee2b0 106 SUPERFAMILY SSF51182 9 103 1.99E-17 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS20500 2e129f243b9ba20abbef8b229e7ee2b0 106 Pfam PF07883 Cupin domain 43 100 1.8E-8 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS20500 2e129f243b9ba20abbef8b229e7ee2b0 106 Gene3D G3DSA:2.60.120.10 10 104 4.9E-21 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS25030 a7c6dd6aa4dfaf94c10cdb68d1df7271 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 6.1E-29 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS12280 2a4a7e4f008ce4801b57577b7c8dd840 79 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 58 1.3E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS12280 2a4a7e4f008ce4801b57577b7c8dd840 79 Gene3D G3DSA:3.10.20.30 2 55 7.5E-13 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS12280 2a4a7e4f008ce4801b57577b7c8dd840 79 SUPERFAMILY SSF54292 5 70 1.04E-15 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS19100 1463dd612b6f3e2150a55ddca8c36666 182 Pfam PF02698 DUF218 domain 14 113 3.9E-11 T 06-07-2017 IPR003848 Domain of unknown function DUF218 APT55_RS19100 1463dd612b6f3e2150a55ddca8c36666 182 Gene3D G3DSA:3.40.50.620 53 109 8.6E-7 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS05345 051eeacee63f31bb50545db699adecdb 94 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 94 39.682 T 06-07-2017 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 APT55_RS05345 051eeacee63f31bb50545db699adecdb 94 Pfam PF02553 Cobalt transport protein component CbiN 9 74 2.1E-26 T 06-07-2017 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 APT55_RS01745 41f23260bafb4bbba46382a2c28027ea 223 Gene3D G3DSA:3.40.50.300 6 218 5.1E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01745 41f23260bafb4bbba46382a2c28027ea 223 Pfam PF00005 ABC transporter 19 157 1.7E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS01745 41f23260bafb4bbba46382a2c28027ea 223 SMART SM00382 28 204 4.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS01745 41f23260bafb4bbba46382a2c28027ea 223 SUPERFAMILY SSF52540 2 211 4.69E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS01745 41f23260bafb4bbba46382a2c28027ea 223 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS19535 af10fcc32225f1e039c3126d902ec50c 181 SUPERFAMILY SSF55729 20 166 4.3E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS19535 af10fcc32225f1e039c3126d902ec50c 181 Gene3D G3DSA:3.40.630.30 23 164 1.2E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS08905 76554fffc8a802e8621d41191164bbee 407 Pfam PF02653 Branched-chain amino acid transport system / permease component 65 392 6.2E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS24535 50a0945a5beca0a193aef0dbea6c1d6b 73 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 7 64 2.1E-7 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system APT55_RS24535 50a0945a5beca0a193aef0dbea6c1d6b 73 SUPERFAMILY SSF143100 4 63 2.75E-14 T 06-07-2017 APT55_RS21535 e83ded513d5ae895de36f2f51442e81d 280 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 13 263 3.3E-75 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 APT55_RS21535 e83ded513d5ae895de36f2f51442e81d 280 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 9 262 18.076 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 APT55_RS21535 e83ded513d5ae895de36f2f51442e81d 280 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 APT55_RS21535 e83ded513d5ae895de36f2f51442e81d 280 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 15 257 1.4E-79 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 APT55_RS23875 957c0e9180cbad028648fa077fb32b78 268 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 16 36 - T 06-07-2017 IPR012902 Prokaryotic N-terminal methylation site APT55_RS25315 a0081aa3b949a6830ca31c37f9fd43d1 168 SMART SM00260 14 159 1.7E-13 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS25315 a0081aa3b949a6830ca31c37f9fd43d1 168 SUPERFAMILY SSF50341 19 163 2.49E-23 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS25315 a0081aa3b949a6830ca31c37f9fd43d1 168 Pfam PF01584 CheW-like domain 20 161 3.8E-24 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS18105 b0ee94dc35f13aa52699c3ff628da6c6 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 288 1.5E-29 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS16440 96970e10fee9a785ce1b28c69237150b 71 Gene3D G3DSA:2.30.30.100 15 70 6.8E-6 T 06-07-2017 APT55_RS16440 96970e10fee9a785ce1b28c69237150b 71 SUPERFAMILY SSF50182 12 69 2.18E-11 T 06-07-2017 IPR010920 LSM domain APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 Pfam PF13533 Biotin-lipoyl like 71 118 1.6E-10 T 06-07-2017 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 82 102 1.9E-8 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 315 339 1.9E-8 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 SUPERFAMILY SSF111369 206 286 3.27E-10 T 06-07-2017 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 200 375 3.8E-15 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 SUPERFAMILY SSF111369 61 151 2.09E-9 T 06-07-2017 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 236 445 5.2E-31 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 Gene3D G3DSA:2.40.50.100 259 286 3.0E-15 T 06-07-2017 APT55_RS14715 62c764ded6d5d91155afa15c3d0530e1 457 Gene3D G3DSA:2.40.50.100 71 104 3.0E-15 T 06-07-2017 APT55_RS15455 25a1cf2a9153976fb8c32b5bf5371465 477 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 18 471 5.9E-80 T 06-07-2017 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 APT55_RS15455 25a1cf2a9153976fb8c32b5bf5371465 477 Gene3D G3DSA:1.20.1250.20 33 213 2.5E-13 T 06-07-2017 APT55_RS15455 25a1cf2a9153976fb8c32b5bf5371465 477 Gene3D G3DSA:1.20.1250.20 250 399 7.0E-11 T 06-07-2017 APT55_RS15455 25a1cf2a9153976fb8c32b5bf5371465 477 SUPERFAMILY SSF103473 19 455 3.4E-34 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS15455 25a1cf2a9153976fb8c32b5bf5371465 477 Pfam PF13347 MFS/sugar transport protein 20 458 1.3E-103 T 06-07-2017 APT55_RS29690 97fbafb2a4d6b0e55d83129966a26420 486 Gene3D G3DSA:1.10.287.40 216 303 9.6E-4 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS30980 602a04fc2de5c70cfb91d97d6f476c53 135 Pfam PF13610 DDE domain 2 103 3.5E-18 T 06-07-2017 IPR032874 DDE domain APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 Pfam PF02222 ATP-grasp domain 121 268 8.8E-56 T 06-07-2017 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 349 40.769 T 06-07-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 Gene3D G3DSA:3.30.470.20 130 365 7.2E-83 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 354 3.9E-132 T 06-07-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 SUPERFAMILY SSF52440 2 94 1.87E-20 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 SUPERFAMILY SSF56059 98 288 1.94E-55 T 06-07-2017 APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 Gene3D G3DSA:3.40.50.20 2 106 2.1E-23 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS19255 dc7bb255d6cf6fc0f24a1c281cd56342 370 SUPERFAMILY SSF51246 294 362 3.14E-16 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT55_RS18245 8a74b5f861b5e8dfc8ab55c1f67e604f 116 SUPERFAMILY SSF50118 1 109 7.68E-27 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS18245 8a74b5f861b5e8dfc8ab55c1f67e604f 116 Gene3D G3DSA:2.30.30.110 1 108 4.8E-24 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS18245 8a74b5f861b5e8dfc8ab55c1f67e604f 116 PIRSF PIRSF033490 1 109 1.6E-22 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS18245 8a74b5f861b5e8dfc8ab55c1f67e604f 116 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 3 107 8.4E-23 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 215 357 7.8E-8 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 SUPERFAMILY SSF53474 302 314 1.82E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 SUPERFAMILY SSF53474 192 275 1.82E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 SUPERFAMILY SSF53474 57 91 1.82E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 Gene3D G3DSA:3.40.50.1820 193 339 8.4E-4 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS02155 dcc60f8bc2d3b9577481ab6b0dd96cd8 558 Gene3D G3DSA:3.40.50.1820 60 139 3.4E-4 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS07520 7b4c11f3a566e2bbfd8f139025fac2de 216 Pfam PF05685 Putative restriction endonuclease 19 185 2.5E-14 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS24500 0585aab68d55b8e2a1c1cc6b4dcd5ed4 249 SUPERFAMILY SSF56235 2 242 3.66E-37 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS24500 0585aab68d55b8e2a1c1cc6b4dcd5ed4 249 Gene3D G3DSA:3.60.20.10 2 208 7.8E-20 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS24500 0585aab68d55b8e2a1c1cc6b4dcd5ed4 249 PIRSF PIRSF009120 1 248 1.2E-107 T 06-07-2017 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 APT55_RS24500 0585aab68d55b8e2a1c1cc6b4dcd5ed4 249 Pfam PF00227 Proteasome subunit 4 184 4.7E-7 T 06-07-2017 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 APT55_RS02950 023b52694c8be007d7aaf1acea7fc319 265 Pfam PF01925 Sulfite exporter TauE/SafE 10 260 1.4E-37 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 APT55_RS25260 2c8065c3e12f3e52cb3067ec4e659c7b 150 SUPERFAMILY SSF55729 12 148 2.4E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS25260 2c8065c3e12f3e52cb3067ec4e659c7b 150 Gene3D G3DSA:3.40.630.30 19 147 3.0E-35 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS25260 2c8065c3e12f3e52cb3067ec4e659c7b 150 Pfam PF13673 Acetyltransferase (GNAT) domain 30 149 5.1E-21 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 SUPERFAMILY SSF82861 331 382 5.62E-6 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 SUPERFAMILY SSF50182 383 446 2.84E-14 T 06-07-2017 IPR010920 LSM domain APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 Gene3D G3DSA:3.30.70.100 450 539 3.5E-11 T 06-07-2017 APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 Gene3D G3DSA:2.30.30.60 399 443 2.5E-14 T 06-07-2017 APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 SUPERFAMILY SSF82689 447 549 1.83E-17 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT55_RS20200 60d676f170b16af3bc35b1e2213bd015 570 Pfam PF00924 Mechanosensitive ion channel 341 541 5.5E-50 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 Pfam PF00106 short chain dehydrogenase 7 188 9.1E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.6E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.6E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.6E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.6E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 Gene3D G3DSA:3.40.50.720 3 205 2.5E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS28275 cf79275f485aea7ff2c0640c1d8dd775 246 SUPERFAMILY SSF51735 5 211 1.96E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS19135 35547c5583c237cc54c1fb2f2e369213 302 SUPERFAMILY SSF55846 109 280 7.59E-30 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS19135 35547c5583c237cc54c1fb2f2e369213 302 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 129 268 4.1E-11 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS19135 35547c5583c237cc54c1fb2f2e369213 302 Gene3D G3DSA:3.40.80.10 109 281 1.1E-23 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS19135 35547c5583c237cc54c1fb2f2e369213 302 SMART SM00644 117 269 1.0E-9 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 APT55_RS30510 62d9cbdce8a7de58d6b4e7974f6a2cb8 119 Pfam PF08814 XisH protein 18 115 2.8E-31 T 06-07-2017 IPR014919 XisH protein APT55_RS30510 62d9cbdce8a7de58d6b4e7974f6a2cb8 119 Gene3D G3DSA:3.40.1350.10 20 119 7.7E-34 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS30510 62d9cbdce8a7de58d6b4e7974f6a2cb8 119 SUPERFAMILY SSF52980 18 118 3.75E-31 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS25525 735636d5485df86b687b447f572a34b9 472 Pfam PF13440 Polysaccharide biosynthesis protein 30 319 2.5E-59 T 06-07-2017 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 SUPERFAMILY SSF48452 461 564 1.28E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 Pfam PF00515 Tetratricopeptide repeat 500 532 1.3E-8 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 Pfam PF13181 Tetratricopeptide repeat 474 494 0.17 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 Pfam PF13181 Tetratricopeptide repeat 534 564 0.016 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 Gene3D G3DSA:1.25.40.10 461 566 1.8E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 SUPERFAMILY SSF52129 4 192 5.18E-10 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 SMART SM00028 462 495 0.58 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 SMART SM00028 500 533 4.1E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 SMART SM00028 534 567 0.0099 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS07895 ad83cb33e8e6d28404e64924aa839381 588 Gene3D G3DSA:3.40.50.1460 3 141 2.0E-6 T 06-07-2017 IPR029030 Caspase-like domain APT55_RS20880 0e721da17c698a877b63d7269a6cbd9d 120 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 23 106 1.2E-14 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS20880 0e721da17c698a877b63d7269a6cbd9d 120 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 17 103 3.7E-7 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS23935 55cb66895eab8c8a127c6c839ea48481 323 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 13 316 7.9E-127 T 06-07-2017 IPR010293 Na+-dependent bicarbonate transporter superfamily APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 42 54 9.7E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 12 26 9.7E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 26 42 9.7E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 Gene3D G3DSA:1.10.10.10 6 70 7.0E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 ProSitePatterns PS00622 LuxR-type HTH domain signature. 26 53 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 Pfam PF00196 Bacterial regulatory proteins, luxR family 11 66 7.9E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 SUPERFAMILY SSF46894 7 71 7.82E-22 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS22905 daaef575a30fa95c6a5412f0d4946df5 89 SMART SM00421 9 66 5.2E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS26710 31345088fc75933b2b7a882e78740899 512 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 75 6.5E-13 T 06-07-2017 APT55_RS26710 31345088fc75933b2b7a882e78740899 512 SUPERFAMILY SSF51905 1 325 2.62E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26710 31345088fc75933b2b7a882e78740899 512 Gene3D G3DSA:3.50.50.60 199 303 2.3E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26710 31345088fc75933b2b7a882e78740899 512 Gene3D G3DSA:3.50.50.60 2 56 2.3E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26710 31345088fc75933b2b7a882e78740899 512 Gene3D G3DSA:3.50.50.60 95 96 2.3E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS22380 ab99a1aff648942da65ecb0bf9263c5e 267 Pfam PF07589 PEP-CTERM motif 238 262 5.1E-6 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS22380 ab99a1aff648942da65ecb0bf9263c5e 267 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 239 262 1.9E-7 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS26295 239f496792a138cf3e2737aa8defe1bc 114 Pfam PF01909 Nucleotidyltransferase domain 24 109 2.7E-12 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS26295 239f496792a138cf3e2737aa8defe1bc 114 Gene3D G3DSA:3.30.460.10 20 111 8.4E-19 T 06-07-2017 APT55_RS26295 239f496792a138cf3e2737aa8defe1bc 114 SUPERFAMILY SSF81301 12 113 6.54E-17 T 06-07-2017 APT55_RS17885 be19787c4967551c3c0dd62d3caee4c9 225 Gene3D G3DSA:3.40.109.10 18 222 2.0E-64 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS17885 be19787c4967551c3c0dd62d3caee4c9 225 SUPERFAMILY SSF55469 18 221 3.01E-53 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT55_RS17885 be19787c4967551c3c0dd62d3caee4c9 225 Pfam PF00881 Nitroreductase family 22 200 1.0E-23 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT55_RS17685 fc1aec1ed499c4d1572694fe5666cc8f 328 SUPERFAMILY SSF53448 3 179 1.48E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS17685 fc1aec1ed499c4d1572694fe5666cc8f 328 Pfam PF00535 Glycosyl transferase family 2 8 167 2.1E-31 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS17685 fc1aec1ed499c4d1572694fe5666cc8f 328 Gene3D G3DSA:3.90.550.10 4 137 8.2E-24 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22140 ae73c6d86c0b4045db91ae565abd5866 592 Pfam PF04966 Carbohydrate-selective porin, OprB family 135 592 3.8E-44 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS22140 ae73c6d86c0b4045db91ae565abd5866 592 Pfam PF00395 S-layer homology domain 69 111 2.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS15065 98ea57402ff5cf648270e00ab247d172 179 SUPERFAMILY SSF52833 3 178 2.61E-45 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS15065 98ea57402ff5cf648270e00ab247d172 179 Pfam PF00578 AhpC/TSA family 6 131 4.1E-23 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS15065 98ea57402ff5cf648270e00ab247d172 179 Gene3D G3DSA:3.40.30.10 6 162 3.1E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS17765 0c59795fc9dcf117a607135de9df2990 463 Pfam PF11850 Protein of unknown function (DUF3370) 35 456 2.2E-195 T 06-07-2017 IPR021801 Protein of unknown function DUF3370 APT55_RS11725 f62571cb2015cb496b17044da4553983 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 24 206 4.4E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11725 f62571cb2015cb496b17044da4553983 233 SUPERFAMILY SSF161098 4 209 3.92E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS11725 f62571cb2015cb496b17044da4553983 233 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 8 209 4.7E-67 T 06-07-2017 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 APT55_RS11725 f62571cb2015cb496b17044da4553983 233 Gene3D G3DSA:1.10.3720.10 6 216 6.5E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS31045 c7321c442c3716d07b86ad769ab46ca4 114 SUPERFAMILY SSF53098 26 85 3.26E-11 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SUPERFAMILY SSF48371 36 248 1.49E-38 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 Gene3D G3DSA:1.25.10.10 38 245 6.8E-38 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SMART SM00567 E-Z type HEAT repeats 142 177 590.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SMART SM00567 E-Z type HEAT repeats 79 108 0.093 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SMART SM00567 E-Z type HEAT repeats 111 140 0.044 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SMART SM00567 E-Z type HEAT repeats 180 217 29.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 SMART SM00567 E-Z type HEAT repeats 48 77 0.0079 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 Pfam PF13646 HEAT repeats 167 245 1.0E-6 T 06-07-2017 APT55_RS11280 cc41cf5cddb7be4bfd7494fddb1f1581 251 Pfam PF13646 HEAT repeats 38 121 1.4E-13 T 06-07-2017 APT55_RS04510 615e829b99a7992882c661334544eb98 497 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 294 482 1.3E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04510 615e829b99a7992882c661334544eb98 497 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 244 6.7E-63 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS04510 615e829b99a7992882c661334544eb98 497 Gene3D G3DSA:3.40.190.10 106 206 1.6E-24 T 06-07-2017 APT55_RS04510 615e829b99a7992882c661334544eb98 497 SUPERFAMILY SSF53850 1 245 1.29E-67 T 06-07-2017 APT55_RS04510 615e829b99a7992882c661334544eb98 497 SMART SM00062 28 246 1.1E-67 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS04510 615e829b99a7992882c661334544eb98 497 Gene3D G3DSA:1.10.3720.10 274 483 1.0E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04510 615e829b99a7992882c661334544eb98 497 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 APT55_RS04510 615e829b99a7992882c661334544eb98 497 SUPERFAMILY SSF161098 274 467 5.36E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS04510 615e829b99a7992882c661334544eb98 497 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 273 376 3.2E-30 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 APT55_RS04510 615e829b99a7992882c661334544eb98 497 SMART SM00079 28 245 1.3E-6 T 06-07-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT55_RS04510 615e829b99a7992882c661334544eb98 497 Gene3D G3DSA:3.40.190.10 207 246 1.1E-36 T 06-07-2017 APT55_RS04510 615e829b99a7992882c661334544eb98 497 Gene3D G3DSA:3.40.190.10 27 105 1.1E-36 T 06-07-2017 APT55_RS17145 e134320bb9d77e21aa46827fe05bdd38 390 SUPERFAMILY SSF53474 31 105 2.15E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17145 e134320bb9d77e21aa46827fe05bdd38 390 SUPERFAMILY SSF53474 182 330 2.15E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17145 e134320bb9d77e21aa46827fe05bdd38 390 Gene3D G3DSA:3.40.50.1820 40 96 1.5E-19 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17145 e134320bb9d77e21aa46827fe05bdd38 390 Gene3D G3DSA:3.40.50.1820 172 326 1.5E-19 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS15295 8234775c22596211ce01d244b3d6ad59 280 Pfam PF14261 Domain of unknown function (DUF4351) 222 276 9.8E-22 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS29530 3910fe93c7d3cac92bc1408d49b936bf 103 Pfam PF12728 Helix-turn-helix domain 36 87 8.0E-7 T 06-07-2017 APT55_RS02675 be0d72da3d878ff7485a7c379bdd00ef 305 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 9 273 2.5E-59 T 06-07-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 APT55_RS02675 be0d72da3d878ff7485a7c379bdd00ef 305 Gene3D G3DSA:3.60.130.10 4 288 2.6E-90 T 06-07-2017 APT55_RS02675 be0d72da3d878ff7485a7c379bdd00ef 305 SUPERFAMILY SSF51197 7 280 1.65E-88 T 06-07-2017 APT55_RS13400 18041cfc0864fe3fad004793db7dd2d8 88 Pfam PF06803 Protein of unknown function (DUF1232) 24 58 6.8E-12 T 06-07-2017 IPR010652 Protein of unknown function DUF1232 APT55_RS26505 c0108a93884390f89f998896c6b123eb 174 Pfam PF04306 Protein of unknown function (DUF456) 20 166 1.9E-33 T 06-07-2017 IPR007403 Protein of unknown function DUF456 APT55_RS05655 2be4c94b7041c8021dce6f5a4761ed5d 193 Pfam PF05685 Putative restriction endonuclease 36 159 2.9E-9 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS12145 0a9ff4f185cd88f5cde9250d171963e1 234 Pfam PF13847 Methyltransferase domain 78 209 1.8E-17 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS12145 0a9ff4f185cd88f5cde9250d171963e1 234 Gene3D G3DSA:3.40.50.150 69 222 5.2E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12145 0a9ff4f185cd88f5cde9250d171963e1 234 SUPERFAMILY SSF53335 37 225 1.64E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25205 6d6a20589609bf4049a3dda38a638183 111 Pfam PF13358 DDE superfamily endonuclease 18 84 5.8E-13 T 06-07-2017 APT55_RS12050 15deb7bf977527fb4ea6a3acc7c7c78d 294 Gene3D G3DSA:3.40.190.120 134 235 8.7E-28 T 06-07-2017 APT55_RS12050 15deb7bf977527fb4ea6a3acc7c7c78d 294 SUPERFAMILY SSF53850 29 293 3.58E-61 T 06-07-2017 APT55_RS12050 15deb7bf977527fb4ea6a3acc7c7c78d 294 Gene3D G3DSA:3.40.190.10 241 293 1.1E-54 T 06-07-2017 APT55_RS12050 15deb7bf977527fb4ea6a3acc7c7c78d 294 Gene3D G3DSA:3.40.190.10 27 133 1.1E-54 T 06-07-2017 APT55_RS12050 15deb7bf977527fb4ea6a3acc7c7c78d 294 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 292 7.7E-60 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 APT55_RS12695 a5c1bf8364c9d8f7696eea15ec25ac61 371 SUPERFAMILY SSF53448 8 286 7.88E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12695 a5c1bf8364c9d8f7696eea15ec25ac61 371 Gene3D G3DSA:3.90.550.10 24 203 5.4E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12695 a5c1bf8364c9d8f7696eea15ec25ac61 371 Pfam PF00535 Glycosyl transferase family 2 29 196 1.2E-28 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS09845 e2336668d344997e5c06c0f499a27007 68 Pfam PF05421 Protein of unknown function (DUF751) 6 64 4.1E-23 T 06-07-2017 IPR008470 Uncharacterised protein family Ycf33 APT55_RS20475 06a76ea8d4e507a8da5f0bbb981a09af 369 SUPERFAMILY SSF53474 78 360 5.6E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20475 06a76ea8d4e507a8da5f0bbb981a09af 369 Gene3D G3DSA:3.40.50.1820 79 362 1.1E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20475 06a76ea8d4e507a8da5f0bbb981a09af 369 Pfam PF00561 alpha/beta hydrolase fold 98 203 1.9E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS18185 c41044bb6d194bd6e31330c21436cfc1 533 Pfam PF00395 S-layer homology domain 45 87 4.7E-9 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS18185 c41044bb6d194bd6e31330c21436cfc1 533 Pfam PF04966 Carbohydrate-selective porin, OprB family 111 166 1.3E-10 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS18185 c41044bb6d194bd6e31330c21436cfc1 533 Pfam PF04966 Carbohydrate-selective porin, OprB family 296 533 2.0E-24 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS18185 c41044bb6d194bd6e31330c21436cfc1 533 Gene3D G3DSA:2.40.128.130 400 505 9.4E-4 T 06-07-2017 IPR005546 Autotransporter beta-domain APT55_RS01000 d54119f58c01f31526f2eeec6a024702 387 Pfam PF02096 60Kd inner membrane protein 27 340 3.6E-39 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 APT55_RS01000 d54119f58c01f31526f2eeec6a024702 387 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 26 341 1.0E-61 T 06-07-2017 IPR028055 Membrane insertase YidC/Oxa1, C-terminal APT55_RS19555 fa3ddcbba663bfebc5d332f02395a7e3 98 Pfam PF13711 Domain of unknown function (DUF4160) 14 84 3.3E-11 T 06-07-2017 IPR025427 Protein of unknown function DUF4160 APT55_RS00375 36859d93748f6d485fbf31a6f22b151f 430 Gene3D G3DSA:3.50.50.60 304 345 3.7E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00375 36859d93748f6d485fbf31a6f22b151f 430 Gene3D G3DSA:3.50.50.60 6 189 3.7E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00375 36859d93748f6d485fbf31a6f22b151f 430 SUPERFAMILY SSF51905 5 190 2.04E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS00375 36859d93748f6d485fbf31a6f22b151f 430 SUPERFAMILY SSF51905 305 350 2.04E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS04270 5619a1d69c968cb3579224d08a647de5 110 Gene3D G3DSA:1.10.10.10 21 76 2.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04270 5619a1d69c968cb3579224d08a647de5 110 SUPERFAMILY SSF46689 20 75 2.51E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS04270 5619a1d69c968cb3579224d08a647de5 110 Pfam PF04255 Protein of unknown function (DUF433) 21 63 1.6E-9 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS28310 d986cb5717c37a5b052d709c7ff71aea 135 Gene3D G3DSA:3.40.50.2300 2 116 1.9E-17 T 06-07-2017 APT55_RS28310 d986cb5717c37a5b052d709c7ff71aea 135 Pfam PF00072 Response regulator receiver domain 6 113 1.0E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28310 d986cb5717c37a5b052d709c7ff71aea 135 SMART SM00448 3 113 6.8E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28310 d986cb5717c37a5b052d709c7ff71aea 135 SUPERFAMILY SSF52172 2 117 1.05E-16 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28655 e0fc5b974b345a6cfb9a94025056e402 87 Gene3D G3DSA:3.40.50.720 14 61 3.0E-5 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS06515 bdacf5073d86aa79b259d91419f15235 67 Gene3D G3DSA:1.10.3460.10 26 52 4.5E-5 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS06515 bdacf5073d86aa79b259d91419f15235 67 SUPERFAMILY SSF103511 20 53 1.7E-9 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS06515 bdacf5073d86aa79b259d91419f15235 67 Pfam PF00504 Chlorophyll A-B binding protein 26 51 1.9E-5 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS31380 10a9da738535c635ef8c51d231de8bc8 384 Pfam PF13395 HNH endonuclease 265 314 3.1E-5 T 06-07-2017 IPR003615 HNH nuclease APT55_RS23300 50ac26047e92bc68175a29f63104e1d1 130 Gene3D G3DSA:3.40.50.1010 1 130 5.7E-30 T 06-07-2017 IPR029060 PIN domain-like APT55_RS23300 50ac26047e92bc68175a29f63104e1d1 130 SUPERFAMILY SSF88723 1 126 2.07E-23 T 06-07-2017 IPR029060 PIN domain-like APT55_RS23300 50ac26047e92bc68175a29f63104e1d1 130 Pfam PF01850 PIN domain 1 123 1.5E-9 T 06-07-2017 IPR002716 PIN domain APT55_RS23300 50ac26047e92bc68175a29f63104e1d1 130 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 129 10.019 T 06-07-2017 IPR022907 VapC family GO:0004540 APT55_RS12105 12d039fa316c9a9d7b911eef0743d73b 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 270 6.7E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12105 12d039fa316c9a9d7b911eef0743d73b 277 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 65 269 1.3E-103 T 06-07-2017 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT55_RS12105 12d039fa316c9a9d7b911eef0743d73b 277 Gene3D G3DSA:1.10.3720.10 77 269 2.1E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12105 12d039fa316c9a9d7b911eef0743d73b 277 SUPERFAMILY SSF161098 78 265 1.31E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS08480 371b1c55255970add0034ca61e56885e 208 SUPERFAMILY SSF52200 50 201 2.62E-26 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08480 371b1c55255970add0034ca61e56885e 208 SMART SM00255 53 204 1.3E-10 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08480 371b1c55255970add0034ca61e56885e 208 Gene3D G3DSA:3.40.50.10140 56 166 7.0E-15 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS08480 371b1c55255970add0034ca61e56885e 208 Pfam PF13676 TIR domain 57 166 1.3E-25 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 SUPERFAMILY SSF53335 31 214 1.51E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 Gene3D G3DSA:3.40.50.150 27 207 2.4E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 Pfam PF13489 Methyltransferase domain 51 202 7.9E-15 T 06-07-2017 APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 Pfam PF00535 Glycosyl transferase family 2 265 431 8.3E-23 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 SUPERFAMILY SSF53448 264 497 5.96E-44 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS22270 25bb27657df217967750a288c4ed6e4a 500 Gene3D G3DSA:3.90.550.10 265 467 9.1E-19 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS10875 59a1d54c310e89ac49688ee7356bffea 683 SUPERFAMILY SSF52540 51 296 3.18E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS10875 59a1d54c310e89ac49688ee7356bffea 683 Pfam PF00350 Dynamin family 71 237 2.6E-32 T 06-07-2017 IPR022812 Dynamin superfamily APT55_RS10875 59a1d54c310e89ac49688ee7356bffea 683 Gene3D G3DSA:3.40.50.300 53 258 6.0E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS19905 f672fffade6f7d98d6c036a5b5c42043 116 SUPERFAMILY SSF81593 17 110 2.59E-5 T 06-07-2017 APT55_RS19905 f672fffade6f7d98d6c036a5b5c42043 116 Gene3D G3DSA:1.20.120.580 70 104 2.6E-4 T 06-07-2017 APT55_RS19905 f672fffade6f7d98d6c036a5b5c42043 116 Pfam PF01934 Protein of unknown function DUF86 14 109 8.8E-21 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS28860 73b7fe6a5f503b64818d90bb4f870822 147 SMART SM00448 6 131 3.2E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28860 73b7fe6a5f503b64818d90bb4f870822 147 SUPERFAMILY SSF52172 4 138 1.57E-31 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS28860 73b7fe6a5f503b64818d90bb4f870822 147 Pfam PF00072 Response regulator receiver domain 8 131 9.5E-19 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS28860 73b7fe6a5f503b64818d90bb4f870822 147 Gene3D G3DSA:3.40.50.2300 3 135 3.5E-34 T 06-07-2017 APT55_RS11780 c59e3e8c76c24dbc3c86c2c443cd260e 207 Gene3D G3DSA:3.80.30.10 80 181 3.1E-9 T 06-07-2017 APT55_RS11780 c59e3e8c76c24dbc3c86c2c443cd260e 207 Pfam PF13353 4Fe-4S single cluster domain 30 167 1.3E-35 T 06-07-2017 APT55_RS11780 c59e3e8c76c24dbc3c86c2c443cd260e 207 PIRSF PIRSF000368 11 184 2.4E-46 T 06-07-2017 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 APT55_RS11780 c59e3e8c76c24dbc3c86c2c443cd260e 207 SUPERFAMILY SSF102114 41 131 5.89E-7 T 06-07-2017 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 Gene3D G3DSA:3.40.640.10 42 262 1.3E-61 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 354 1.3E-88 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 Gene3D G3DSA:3.90.1150.10 263 356 2.3E-15 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 356 52.289 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 Pfam PF00155 Aminotransferase class I and II 31 347 5.0E-49 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT55_RS24080 0882b19fa1717e914af7d564b571e0eb 357 SUPERFAMILY SSF53383 28 356 2.39E-69 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS00900 af0c7faea65e821253dcfad7be46c1eb 198 SUPERFAMILY SSF48452 82 176 1.3E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS00900 af0c7faea65e821253dcfad7be46c1eb 198 Gene3D G3DSA:1.25.40.10 75 170 1.1E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01335 96660469a6da36013d5c9b6701270bc7 174 PIRSF PIRSF029509 20 169 3.9E-47 T 06-07-2017 IPR016923 Uncharacterised conserved protein UCP029509, membrane APT55_RS01335 96660469a6da36013d5c9b6701270bc7 174 Pfam PF09990 Predicted membrane protein (DUF2231) 65 163 7.8E-22 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane APT55_RS24625 6fcbd7fc14dfb778c9c1565ce2ed3edc 176 Gene3D G3DSA:3.40.50.300 4 168 5.1E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24625 6fcbd7fc14dfb778c9c1565ce2ed3edc 176 SUPERFAMILY SSF52540 4 168 6.59E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24625 6fcbd7fc14dfb778c9c1565ce2ed3edc 176 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 5 167 7.8E-56 T 06-07-2017 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS24625 6fcbd7fc14dfb778c9c1565ce2ed3edc 176 PIRSF PIRSF006135 3 171 1.2E-52 T 06-07-2017 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 APT55_RS19160 a4a4f18ecddd70b53766fbf86e6f5cd7 155 SUPERFAMILY SSF55874 24 126 1.58E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19160 a4a4f18ecddd70b53766fbf86e6f5cd7 155 Gene3D G3DSA:3.30.565.10 32 127 3.1E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS19160 a4a4f18ecddd70b53766fbf86e6f5cd7 155 Pfam PF13581 Histidine kinase-like ATPase domain 36 136 8.7E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 4.5E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 SMART SM00418 19 97 2.0E-18 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 3.7E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 3.7E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 3.7E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 SUPERFAMILY SSF46785 14 102 3.31E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05295 c333ad83eda7f1f6becf06c083a7bb1b 120 Gene3D G3DSA:1.10.10.10 8 101 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS25180 c09985d6f7c3f784a8210b0a81bf7882 147 Pfam PF02656 Domain of unknown function (DUF202) 10 88 2.0E-21 T 06-07-2017 IPR003807 Domain of unknown function DUF202 APT55_RS15575 e499daabeb4e247030c895d82332312a 126 SUPERFAMILY SSF56978 25 121 1.7E-11 T 06-07-2017 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 APT55_RS15575 e499daabeb4e247030c895d82332312a 126 Gene3D G3DSA:2.60.40.1430 31 120 1.5E-6 T 06-07-2017 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 SMART SM00421 146 203 3.4E-25 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 SMART SM00448 2 115 5.4E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 4.5E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 4.5E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 4.5E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 Gene3D G3DSA:3.40.50.2300 1 120 4.9E-37 T 06-07-2017 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 SUPERFAMILY SSF46894 142 206 4.08E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 Gene3D G3DSA:1.10.10.10 121 206 8.2E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 Pfam PF00072 Response regulator receiver domain 5 115 5.0E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 SUPERFAMILY SSF52172 1 131 2.28E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS19300 6b0c4f5d69868c1197c88776c688b503 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.1E-19 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS11855 b2d7453dded2c2d32baf60c420ad6876 302 Hamap MF_00313 Glutaminase [glsA]. 7 301 33.228 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 APT55_RS11855 b2d7453dded2c2d32baf60c420ad6876 302 Gene3D G3DSA:3.40.710.10 9 301 1.7E-85 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS11855 b2d7453dded2c2d32baf60c420ad6876 302 Pfam PF04960 Glutaminase 25 301 5.7E-88 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 APT55_RS11855 b2d7453dded2c2d32baf60c420ad6876 302 SUPERFAMILY SSF56601 6 301 3.29E-79 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS04060 56a882ec4ba071de69360d43922d5aea 105 Pfam PF08855 Domain of unknown function (DUF1825) 1 103 4.0E-51 T 06-07-2017 IPR014954 Protein of unknown function DUF1825 APT55_RS00380 8efffd58866a8985d006a74c884ebdcd 754 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 37 252 1.9E-73 T 06-07-2017 IPR032856 Putative glycogen debranching enzyme, N-terminal APT55_RS00380 8efffd58866a8985d006a74c884ebdcd 754 Pfam PF06202 Amylo-alpha-1,6-glucosidase 319 682 6.5E-13 T 06-07-2017 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APT55_RS00380 8efffd58866a8985d006a74c884ebdcd 754 SUPERFAMILY SSF48208 265 748 9.9E-83 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS15470 0b388e25e12b2913ac4e0920ba53632b 225 SUPERFAMILY SSF140990 66 215 8.11E-20 T 06-07-2017 APT55_RS03290 73a908771cb69841baf64b51a98e5cd4 133 ProDom PD082534 FRXC 3'REGION URF1 TLL2346 ALL5077 ORF133 ALR4417 1 120 8.0E-65 T 06-07-2017 IPR020346 Uncharacterised protein family 15.3kDa APT55_RS26975 40054630aeb9d680302f8f456fcc627b 317 SUPERFAMILY SSF56235 7 303 3.34E-68 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS26975 40054630aeb9d680302f8f456fcc627b 317 Pfam PF01112 Asparaginase 8 306 1.4E-96 T 06-07-2017 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 APT55_RS07540 595203b6050a19747035f90efeb9a4be 127 SUPERFAMILY SSF160532 4 126 4.58E-32 T 06-07-2017 APT55_RS07540 595203b6050a19747035f90efeb9a4be 127 Pfam PF08854 Domain of unknown function (DUF1824) 10 126 1.8E-36 T 06-07-2017 IPR014953 Protein of unknown function DUF1824 APT55_RS07540 595203b6050a19747035f90efeb9a4be 127 Gene3D G3DSA:3.30.360.10 2 127 5.4E-35 T 06-07-2017 APT55_RS12045 e96a4e9fe04d0c69641d6dfe03d03aa2 208 SUPERFAMILY SSF161098 10 197 6.93E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12045 e96a4e9fe04d0c69641d6dfe03d03aa2 208 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 205 1.6E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS12045 e96a4e9fe04d0c69641d6dfe03d03aa2 208 Gene3D G3DSA:1.10.3720.10 8 196 4.4E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS23490 8864870a5d7d6d5efc3ad39fc5c26ed0 474 TIGRFAM TIGR00947 2A73: putative bicarbonate transporter, IctB family 33 455 4.0E-167 T 06-07-2017 IPR006007 Inorganic carbon transporter APT55_RS23490 8864870a5d7d6d5efc3ad39fc5c26ed0 474 Pfam PF04932 O-Antigen ligase 241 387 3.9E-12 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS02595 3bca23b160384adfc1cbf44fc0c43829 339 Gene3D G3DSA:3.20.20.140 5 319 3.2E-53 T 06-07-2017 APT55_RS02595 3bca23b160384adfc1cbf44fc0c43829 339 Pfam PF00962 Adenosine/AMP deaminase 5 310 9.2E-18 T 06-07-2017 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 APT55_RS02595 3bca23b160384adfc1cbf44fc0c43829 339 SUPERFAMILY SSF51556 5 310 3.25E-40 T 06-07-2017 IPR032466 Metal-dependent hydrolase APT55_RS22095 ccfcde6e33909d485a4556746febe8b8 822 Pfam PF12392 Collagenase 387 506 6.3E-23 T 06-07-2017 IPR020988 Peptidase U32, collagenase APT55_RS22095 ccfcde6e33909d485a4556746febe8b8 822 Gene3D G3DSA:3.20.20.70 14 154 9.2E-4 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS22095 ccfcde6e33909d485a4556746febe8b8 822 Pfam PF01136 Peptidase family U32 636 802 8.7E-12 T 06-07-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APT55_RS22095 ccfcde6e33909d485a4556746febe8b8 822 Pfam PF01136 Peptidase family U32 77 298 2.0E-78 T 06-07-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 SUPERFAMILY SSF53474 2 278 9.19E-80 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00412 Epoxide hydrolase signature 93 106 1.1E-21 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00412 Epoxide hydrolase signature 28 46 1.1E-21 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00412 Epoxide hydrolase signature 222 238 1.1E-21 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00412 Epoxide hydrolase signature 255 277 1.1E-21 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 Pfam PF00561 alpha/beta hydrolase fold 22 264 3.3E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.0E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 1.0E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 1.0E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS21065 4f8383cdd6d10a28b74c295743f10fdf 280 Gene3D G3DSA:3.40.50.1820 1 278 3.3E-93 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS10705 b8343a18abd804bfdbd034d8669f107d 299 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 24 274 4.6E-34 T 06-07-2017 IPR019127 Exosortase EpsH-related APT55_RS10705 b8343a18abd804bfdbd034d8669f107d 299 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 185 278 1.0E-16 T 06-07-2017 IPR026392 Exosortase/Archaeosortase domain APT55_RS10705 b8343a18abd804bfdbd034d8669f107d 299 TIGRFAM TIGR03763 cyanoexo_CrtA: cyanoexosortase A 23 278 4.9E-56 T 06-07-2017 IPR022505 Exosortase, cyanobacteria APT55_RS18780 eaa6d301cc3bec3f1f5f272d2bb97de3 553 SUPERFAMILY SSF52317 242 384 1.01E-6 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS18780 eaa6d301cc3bec3f1f5f272d2bb97de3 553 Pfam PF09822 ABC-type uncharacterized transport system 101 328 6.1E-36 T 06-07-2017 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 APT55_RS01225 17a13eb53a5a0c5a0f6add5ff2ba21f0 104 Pfam PF06480 FtsH Extracellular 10 88 7.0E-6 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 Pfam PF13432 Tetratricopeptide repeat 52 112 9.6E-9 T 06-07-2017 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 113 146 94.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 45 78 0.026 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 209 242 8.2E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 174 207 53.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 79 112 0.13 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SMART SM00028 243 276 0.077 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 Gene3D G3DSA:1.25.40.10 41 142 2.9E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 Gene3D G3DSA:1.25.40.10 174 274 4.5E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 Pfam PF00515 Tetratricopeptide repeat 210 241 7.8E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 APT55_RS26900 2709a31ca99beb8fbfc74627bd7fd3ee 297 SUPERFAMILY SSF48452 45 276 1.21E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS23740 b3446bac08b896c929426f1f2bd61750 260 SUPERFAMILY SSF53098 17 189 4.18E-41 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS23740 b3446bac08b896c929426f1f2bd61750 260 Gene3D G3DSA:3.30.420.10 15 189 3.6E-38 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS23740 b3446bac08b896c929426f1f2bd61750 260 SMART SM00479 20 189 7.4E-20 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III APT55_RS23740 b3446bac08b896c929426f1f2bd61750 260 Pfam PF00929 Exonuclease 23 176 1.7E-20 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III APT55_RS26000 869cb59c7fab2d25eba0f7b867a47fe2 188 Gene3D G3DSA:3.30.420.10 77 168 1.5E-4 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS26000 869cb59c7fab2d25eba0f7b867a47fe2 188 Pfam PF13358 DDE superfamily endonuclease 20 160 1.9E-34 T 06-07-2017 APT55_RS18110 ede417225cc2ec69f87204a84c7d251f 394 SUPERFAMILY SSF53335 27 135 3.3E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18110 ede417225cc2ec69f87204a84c7d251f 394 SUPERFAMILY SSF53335 171 334 3.3E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18110 ede417225cc2ec69f87204a84c7d251f 394 Pfam PF13847 Methyltransferase domain 68 254 3.0E-23 T 06-07-2017 IPR025714 Methyltransferase domain APT55_RS18110 ede417225cc2ec69f87204a84c7d251f 394 Gene3D G3DSA:3.40.50.150 66 134 3.5E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18110 ede417225cc2ec69f87204a84c7d251f 394 Gene3D G3DSA:3.40.50.150 171 290 3.5E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS09485 bd860ef64e76f4757cefd277601d929e 731 Pfam PF04865 Baseplate J-like protein 449 637 2.5E-9 T 06-07-2017 IPR006949 Baseplate protein J-like APT55_RS09485 bd860ef64e76f4757cefd277601d929e 731 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 13 686 2.9E-185 T 06-07-2017 IPR011749 Conserved hypothetical protein CHP02243 APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 SMART SM00091 65 131 1.3E-6 T 06-07-2017 IPR000014 PAS domain APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 Pfam PF00072 Response regulator receiver domain 205 317 9.3E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 Pfam PF00989 PAS fold 66 166 6.4E-10 T 06-07-2017 IPR013767 PAS fold GO:0006355 APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 Gene3D G3DSA:3.30.450.20 55 166 3.0E-15 T 06-07-2017 APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 SUPERFAMILY SSF55785 54 168 2.27E-15 T 06-07-2017 IPR000014 PAS domain APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 SUPERFAMILY SSF52172 201 322 1.14E-28 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 SMART SM00448 203 317 1.4E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05055 ae17ff7fe1dbe94bafd3e7bb547aff59 328 Gene3D G3DSA:3.40.50.2300 202 324 9.2E-31 T 06-07-2017 APT55_RS14820 46664005d85922ba98540464faea683b 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 53 14.281 T 06-07-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS14820 46664005d85922ba98540464faea683b 57 Pfam PF01783 Ribosomal L32p protein family 2 42 2.5E-8 T 06-07-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT55_RS31100 efd30edbb7628a35aa19a8935768b576 401 Gene3D G3DSA:1.10.10.10 66 116 5.0E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05620 c8b7b4d5fac2d8b0ae4a58056c0a7519 155 Pfam PF04134 Protein of unknown function, DUF393 17 128 4.2E-23 T 06-07-2017 IPR007263 Protein of unknown function DUF393 APT55_RS31725 344b7513a62aa3aee99475991e9bce47 424 Pfam PF04326 Putative DNA-binding domain 18 144 2.5E-8 T 06-07-2017 IPR007421 Schlafen, AAA domain GO:0005524 APT55_RS11690 8ffb8cb35a936bbbe5957203b99621ec 274 Gene3D G3DSA:3.40.50.720 7 246 9.8E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS11690 8ffb8cb35a936bbbe5957203b99621ec 274 SUPERFAMILY SSF69572 3 247 6.67E-72 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS11690 8ffb8cb35a936bbbe5957203b99621ec 274 Pfam PF00899 ThiF family 12 241 1.8E-50 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT55_RS16615 fed3751591ad14089fb1de88b96e1557 110 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 6.7E-17 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS16615 fed3751591ad14089fb1de88b96e1557 110 Gene3D G3DSA:2.60.300.12 1 96 1.3E-25 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS16615 fed3751591ad14089fb1de88b96e1557 110 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 06-07-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site APT55_RS16615 fed3751591ad14089fb1de88b96e1557 110 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 107 3.3E-32 T 06-07-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 APT55_RS16615 fed3751591ad14089fb1de88b96e1557 110 SUPERFAMILY SSF89360 1 96 1.16E-23 T 06-07-2017 IPR000361 FeS cluster biogenesis APT55_RS04520 e7361b667cecf4f292074a8021a209f5 285 Gene3D G3DSA:3.30.920.30 16 54 1.2E-4 T 06-07-2017 APT55_RS07535 1cae4ac4f7a8562d5b50ecfd31442fa7 107 SUPERFAMILY SSF143100 6 64 3.14E-5 T 06-07-2017 APT55_RS22830 7856c543efea0324d886d07a01495d57 115 Pfam PF01934 Protein of unknown function DUF86 11 103 1.2E-27 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS22830 7856c543efea0324d886d07a01495d57 115 Gene3D G3DSA:1.20.120.580 66 111 1.3E-8 T 06-07-2017 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Pfam PF10531 SLBB domain 151 201 3.4E-8 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Pfam PF10531 SLBB domain 269 305 0.006 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Pfam PF02563 Polysaccharide biosynthesis/export protein 75 144 8.0E-16 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Gene3D G3DSA:3.10.560.10 269 340 4.6E-7 T 06-07-2017 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Gene3D G3DSA:3.10.560.10 144 233 3.8E-13 T 06-07-2017 APT55_RS04935 1304b096cfb7792c02f0903c4f47295b 385 Gene3D G3DSA:3.30.1950.10 79 143 6.5E-13 T 06-07-2017 APT55_RS14365 b68e4af831be89bc65e19bad72594b5d 153 Gene3D G3DSA:2.60.120.10 10 150 7.6E-35 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS14365 b68e4af831be89bc65e19bad72594b5d 153 SUPERFAMILY SSF51182 7 121 5.63E-22 T 06-07-2017 IPR011051 RmlC-like cupin domain APT55_RS14365 b68e4af831be89bc65e19bad72594b5d 153 Pfam PF07883 Cupin domain 40 108 2.0E-16 T 06-07-2017 IPR013096 Cupin 2, conserved barrel APT55_RS09490 3a8dc963f734dd43206cc48fd3c5c2e8 333 TIGRFAM TIGR02242 tail_TIGR02242: phage tail protein domain 137 262 1.2E-38 T 06-07-2017 IPR011748 Uncharacterised protein family, phage tail-like APT55_RS09490 3a8dc963f734dd43206cc48fd3c5c2e8 333 Pfam PF09684 Phage tail protein (Tail_P2_I) 161 253 5.7E-8 T 06-07-2017 IPR006521 Tail protein I APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 SMART SM00448 2 115 4.7E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 Pfam PF00072 Response regulator receiver domain 4 115 1.3E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 Gene3D G3DSA:1.10.287.130 145 208 5.1E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 SUPERFAMILY SSF52172 2 145 8.11E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 SUPERFAMILY SSF47384 137 209 5.49E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT55_RS27950 5f4cb0340aa412838ae70686a2b3a715 233 Gene3D G3DSA:3.40.50.2300 2 128 4.4E-37 T 06-07-2017 APT55_RS27935 e16d5d8fa8dc96bc02ee8b41b8c3b7a3 251 Gene3D G3DSA:3.90.550.10 1 215 2.6E-47 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS27935 e16d5d8fa8dc96bc02ee8b41b8c3b7a3 251 Pfam PF00535 Glycosyl transferase family 2 4 125 9.8E-28 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS27935 e16d5d8fa8dc96bc02ee8b41b8c3b7a3 251 SUPERFAMILY SSF53448 2 208 3.76E-51 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS13160 2cc0240dd483d4626c5f3bf9e67d0cd4 295 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 12 276 7.9E-7 T 06-07-2017 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD APT55_RS29115 e768d235ea1fbdaa319ec75173d95f9e 553 SUPERFAMILY SSF51445 8 346 2.0E-88 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily APT55_RS29115 e768d235ea1fbdaa319ec75173d95f9e 553 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 12 341 1.7E-99 T 06-07-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 APT55_RS29115 e768d235ea1fbdaa319ec75173d95f9e 553 Gene3D G3DSA:3.20.20.300 41 353 2.8E-96 T 06-07-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 APT55_RS20905 86e6a9eb5c4b97a895eef54ffac53f14 68 Pfam PF10742 Protein of unknown function (DUF2555) 8 60 6.9E-30 T 06-07-2017 IPR019678 Protein of unknown function DUF2555 APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 SUPERFAMILY SSF47090 167 220 5.18E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Pfam PF01471 Putative peptidoglycan binding domain 169 219 2.2E-6 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Pfam PF01471 Putative peptidoglycan binding domain 80 134 5.1E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Pfam PF01471 Putative peptidoglycan binding domain 225 275 3.0E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 SUPERFAMILY SSF47090 76 139 9.58E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 SUPERFAMILY SSF47090 223 275 9.42E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Gene3D G3DSA:1.10.101.10 169 223 6.3E-7 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Gene3D G3DSA:1.10.101.10 224 279 4.5E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS04700 49e5cb26f58a182fff720508dbeda98a 285 Gene3D G3DSA:1.10.101.10 78 139 1.2E-12 T 06-07-2017 IPR002477 Peptidoglycan binding-like APT55_RS19690 5ee00fcdd5cc2f75701279cb8681a4f0 260 Pfam PF08861 Domain of unknown function DUF1828 32 122 1.9E-23 T 06-07-2017 IPR014960 Domain of unknown function DUF1828 APT55_RS02505 47e3863588b6811a9fe6cc97c554b12b 214 Gene3D G3DSA:1.20.120.20 86 186 1.2E-5 T 06-07-2017 APT55_RS02505 47e3863588b6811a9fe6cc97c554b12b 214 SUPERFAMILY SSF58113 87 198 1.44E-5 T 06-07-2017 APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 Pfam PF13437 HlyD family secretion protein 255 363 2.8E-12 T 06-07-2017 APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 TIGRFAM TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family 44 380 6.8E-106 T 06-07-2017 IPR014315 ABC transporter, membrane fusion protein, DevB type APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 Gene3D G3DSA:2.40.50.100 54 88 1.9E-9 T 06-07-2017 APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 Gene3D G3DSA:2.40.50.100 248 284 1.9E-9 T 06-07-2017 APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 Pfam PF13533 Biotin-lipoyl like 55 104 8.5E-9 T 06-07-2017 APT55_RS01540 d9d9e7367d062d48e3c210c7b4c7f451 383 SUPERFAMILY SSF111369 196 313 2.48E-11 T 06-07-2017 APT55_RS09010 8b72112641ec6f947bd4c9de1c0382d6 116 Pfam PF14279 HNH endonuclease 31 73 1.1E-13 T 06-07-2017 IPR029471 HNH endonuclease 5 APT55_RS09010 8b72112641ec6f947bd4c9de1c0382d6 116 SMART SM00507 18 69 9.9E-13 T 06-07-2017 IPR003615 HNH nuclease APT55_RS17990 1ae71c9aa71081b483733809c6bdd695 257 Pfam PF03848 Tellurite resistance protein TehB 54 143 8.4E-6 T 06-07-2017 IPR015985 Tellurite resistance methyltransferase TehB-like domain APT55_RS17990 1ae71c9aa71081b483733809c6bdd695 257 Gene3D G3DSA:3.40.50.150 43 252 5.0E-16 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS17990 1ae71c9aa71081b483733809c6bdd695 257 SUPERFAMILY SSF53335 35 252 1.9E-18 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS12655 de86409fcab78a42dc72ffc92dbaa355 111 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 2 106 5.7E-26 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 APT55_RS17090 4b99531787d4a535bc8fcc4484219b93 206 Pfam PF02441 Flavoprotein 6 143 1.1E-25 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS17090 4b99531787d4a535bc8fcc4484219b93 206 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 200 1.1E-49 T 06-07-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 APT55_RS17090 4b99531787d4a535bc8fcc4484219b93 206 SUPERFAMILY SSF52507 4 202 3.66E-55 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS17090 4b99531787d4a535bc8fcc4484219b93 206 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 4 202 34.044 T 06-07-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 APT55_RS17090 4b99531787d4a535bc8fcc4484219b93 206 Gene3D G3DSA:3.40.50.1950 5 202 1.7E-66 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT55_RS29930 ce70cce2423ec12186569f05f257378a 260 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 5 71 1.9E-14 T 06-07-2017 IPR022385 Rhs repeat-associated core GO:0097264 APT55_RS07690 da3030530ce0c813d59ff45250601c6e 143 Pfam PF07007 Protein of unknown function (DUF1311) 41 132 2.7E-23 T 06-07-2017 IPR009739 Protein of unknown function DUF1311 APT55_RS27445 27c66376f8b6a1c932d7b14aca2990af 243 SUPERFAMILY SSF52540 3 239 5.47E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS27445 27c66376f8b6a1c932d7b14aca2990af 243 Gene3D G3DSA:3.40.50.300 2 170 5.3E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 SUPERFAMILY SSF81345 346 668 1.03E-77 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 Pfam PF01032 FecCD transport family 18 325 3.8E-86 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 Pfam PF01032 FecCD transport family 361 668 3.3E-90 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 SUPERFAMILY SSF81345 9 324 6.02E-74 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 Gene3D G3DSA:1.10.3470.10 10 329 1.2E-92 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS25045 c6ab5075d0cf662b7f07b4c726c010e9 673 Gene3D G3DSA:1.10.3470.10 351 671 2.7E-95 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS01465 fa5652d4b20cc290db0491164eee2c8f 234 SUPERFAMILY SSF103473 13 204 3.66E-27 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS01465 fa5652d4b20cc290db0491164eee2c8f 234 Gene3D G3DSA:1.20.1250.20 13 197 9.4E-22 T 06-07-2017 APT55_RS01465 fa5652d4b20cc290db0491164eee2c8f 234 Pfam PF05977 Transmembrane secretion effector 6 205 1.7E-35 T 06-07-2017 IPR010290 Transmembrane secretion effector APT55_RS11865 c7575664e0a2c349a0ec8f6e768b2401 324 Gene3D G3DSA:3.40.1190.20 2 317 2.1E-81 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS11865 c7575664e0a2c349a0ec8f6e768b2401 324 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 35 59 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT55_RS11865 c7575664e0a2c349a0ec8f6e768b2401 324 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT55_RS11865 c7575664e0a2c349a0ec8f6e768b2401 324 Pfam PF00294 pfkB family carbohydrate kinase 4 309 7.1E-58 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB APT55_RS11865 c7575664e0a2c349a0ec8f6e768b2401 324 SUPERFAMILY SSF53613 1 317 7.48E-74 T 06-07-2017 IPR029056 Ribokinase-like APT55_RS22465 122c29ab847c1fc66ff3a4df5c46bd38 81 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 11 62 5.2E-13 T 06-07-2017 IPR012933 HicA mRNA interferase family GO:0003729 APT55_RS22465 122c29ab847c1fc66ff3a4df5c46bd38 81 SUPERFAMILY SSF54786 8 63 5.89E-11 T 06-07-2017 APT55_RS22465 122c29ab847c1fc66ff3a4df5c46bd38 81 Gene3D G3DSA:3.30.920.30 7 75 2.3E-13 T 06-07-2017 APT55_RS28455 6ac48016b55346757448700b615fb7fd 327 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 263 324 7.0E-6 T 06-07-2017 IPR010221 VCBS repeat APT55_RS28620 24cc33a00d86479410d22ca26a3c01af 204 Pfam PF07452 CHRD domain 38 198 3.6E-12 T 06-07-2017 IPR010895 CHRD APT55_RS10885 6e648dc65120e4585994d18a8220aae8 208 Gene3D G3DSA:3.40.50.1010 45 198 2.4E-38 T 06-07-2017 IPR029060 PIN domain-like APT55_RS10885 6e648dc65120e4585994d18a8220aae8 208 Pfam PF01936 NYN domain 47 195 3.7E-30 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type APT55_RS06635 99b4a3a614b15ee1d148ee2ef2618fbd 377 Pfam PF00487 Fatty acid desaturase 49 328 1.6E-28 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS16175 c707c39a67d1b1ba2f6c5b9b69eab9c5 59 Pfam PF13318 Protein of unknown function (DUF4089) 9 57 1.7E-21 T 06-07-2017 IPR025148 Protein of unknown function DUF4089 APT55_RS04445 d0b262ecd4a58c1de693e0c0c8f22f6d 322 SUPERFAMILY SSF53590 1 317 3.4E-71 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain APT55_RS04445 d0b262ecd4a58c1de693e0c0c8f22f6d 322 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 310 6.3E-55 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain APT55_RS04445 d0b262ecd4a58c1de693e0c0c8f22f6d 322 Gene3D G3DSA:3.90.245.10 1 318 7.8E-79 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain APT55_RS13475 5f63ef7937586b966b4defb07244eb46 152 Pfam PF00072 Response regulator receiver domain 33 144 1.5E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13475 5f63ef7937586b966b4defb07244eb46 152 Gene3D G3DSA:3.40.50.2300 27 149 1.7E-31 T 06-07-2017 APT55_RS13475 5f63ef7937586b966b4defb07244eb46 152 SMART SM00448 31 144 6.4E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS13475 5f63ef7937586b966b4defb07244eb46 152 SUPERFAMILY SSF52172 29 149 5.55E-30 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02585 154df8f0c745b985fa47eee3c017297c 260 Pfam PF06182 ABC-2 family transporter protein 37 259 9.5E-71 T 06-07-2017 IPR010390 Protein of unknown function DUF990 APT55_RS02635 442fe43b0d8caee7f2d70a697aeb6aeb 121 Pfam PF00072 Response regulator receiver domain 4 115 1.1E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02635 442fe43b0d8caee7f2d70a697aeb6aeb 121 SMART SM00448 2 115 1.7E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS02635 442fe43b0d8caee7f2d70a697aeb6aeb 121 SUPERFAMILY SSF52172 2 120 2.42E-41 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02635 442fe43b0d8caee7f2d70a697aeb6aeb 121 Gene3D G3DSA:3.40.50.2300 2 120 1.8E-42 T 06-07-2017 APT55_RS10740 efd4bf89fb78f200a157aab8ebad6317 296 SUPERFAMILY SSF52096 52 241 1.31E-27 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS10740 efd4bf89fb78f200a157aab8ebad6317 296 Pfam PF01972 Serine dehydrogenase proteinase 5 277 4.9E-117 T 06-07-2017 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 APT55_RS10740 efd4bf89fb78f200a157aab8ebad6317 296 Gene3D G3DSA:3.90.226.10 222 241 3.6E-22 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS10740 efd4bf89fb78f200a157aab8ebad6317 296 Gene3D G3DSA:3.90.226.10 61 153 3.6E-22 T 06-07-2017 IPR029045 ClpP/crotonase-like domain APT55_RS20760 d884f28f991adbe48d4620c1b6287155 194 SUPERFAMILY SSF54518 11 113 2.62E-5 T 06-07-2017 IPR025659 Tubby C-terminal-like domain APT55_RS19315 447393ef013e8c23bb39b1809eac7ee4 149 Pfam PF09912 Uncharacterized protein conserved in bacteria (DUF2141) 33 141 7.6E-37 T 06-07-2017 IPR018673 Protein of unknown function DUF2141 APT55_RS28535 40ae6fc28035acf128d48f91a8c519eb 226 Gene3D G3DSA:1.10.3630.10 4 222 1.2E-34 T 06-07-2017 APT55_RS28535 40ae6fc28035acf128d48f91a8c519eb 226 Pfam PF05719 Golgi phosphoprotein 3 (GPP34) 4 212 3.5E-43 T 06-07-2017 IPR008628 Golgi phosphoprotein 3 GO:0048193|GO:0070273 APT55_RS27605 1d0fe35420142d5e6863d2d181c7b5da 340 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 326 2.4E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS09270 5137b2420293b22748d33e203fcdcc06 233 SUPERFAMILY SSF89550 38 227 2.22E-35 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT55_RS09270 5137b2420293b22748d33e203fcdcc06 233 Pfam PF02811 PHP domain 40 92 3.2E-6 T 06-07-2017 IPR004013 PHP domain GO:0003824 APT55_RS09270 5137b2420293b22748d33e203fcdcc06 233 Gene3D G3DSA:3.20.20.140 39 228 7.5E-28 T 06-07-2017 APT55_RS09270 5137b2420293b22748d33e203fcdcc06 233 SMART SM00481 38 109 3.8E-6 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 APT55_RS24350 85a8cb11c05e7c354af0da99dd604c2e 328 TIGRFAM TIGR03466 HpnA: hopanoid-associated sugar epimerase 1 323 2.9E-142 T 06-07-2017 IPR017829 Hopanoid-associated sugar epimerase KEGG: 00040+1.1.1.21|KEGG: 00051+1.1.1.21|KEGG: 00052+1.1.1.21|KEGG: 00561+1.1.1.21|KEGG: 00941+1.1.1.219|MetaCyc: PWY-5152|MetaCyc: PWY-5515|MetaCyc: PWY-6693 APT55_RS24350 85a8cb11c05e7c354af0da99dd604c2e 328 Gene3D G3DSA:3.40.50.720 1 317 1.3E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24350 85a8cb11c05e7c354af0da99dd604c2e 328 SUPERFAMILY SSF51735 1 263 3.84E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24350 85a8cb11c05e7c354af0da99dd604c2e 328 SUPERFAMILY SSF51735 290 324 3.84E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24350 85a8cb11c05e7c354af0da99dd604c2e 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 228 2.4E-33 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS17720 b7b900052b61402044339fa28433db1d 391 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 336 7.0E-51 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS17720 b7b900052b61402044339fa28433db1d 391 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 39 346 4.0E-131 T 06-07-2017 IPR017778 ABC transporter, urea, permease protein, UrtC APT55_RS04940 c4b11a8ed9f6c3422b38c09a795e87e2 725 Gene3D G3DSA:3.40.50.300 515 694 1.5E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04940 c4b11a8ed9f6c3422b38c09a795e87e2 725 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 525 703 1.9E-10 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS04940 c4b11a8ed9f6c3422b38c09a795e87e2 725 SUPERFAMILY SSF52540 515 705 1.06E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS28765 80c0eee032644b940ab1a975602e2616 498 Gene3D G3DSA:3.40.710.10 21 354 8.7E-81 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS28765 80c0eee032644b940ab1a975602e2616 498 Pfam PF00144 Beta-lactamase 38 350 5.8E-71 T 06-07-2017 IPR001466 Beta-lactamase-related APT55_RS28765 80c0eee032644b940ab1a975602e2616 498 SUPERFAMILY SSF56601 38 353 2.82E-81 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like APT55_RS08270 5e0408faeaed730d05c725f9afab6f5e 66 Pfam PF10929 Protein of unknown function (DUF2811) 6 62 2.9E-28 T 06-07-2017 IPR021231 Protein of unknown function DUF2811 APT55_RS09255 cc144cbc42c6c45f2581b9fe0304077b 131 Gene3D G3DSA:3.40.50.2300 12 130 2.8E-33 T 06-07-2017 APT55_RS09255 cc144cbc42c6c45f2581b9fe0304077b 131 Pfam PF00072 Response regulator receiver domain 15 126 5.8E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09255 cc144cbc42c6c45f2581b9fe0304077b 131 SMART SM00448 13 126 1.9E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS09255 cc144cbc42c6c45f2581b9fe0304077b 131 SUPERFAMILY SSF52172 9 130 4.27E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS12780 af5fb5dde7041369f57ab1ac8e0525d0 461 Pfam PF13440 Polysaccharide biosynthesis protein 31 321 4.4E-42 T 06-07-2017 APT55_RS21485 2edd195ff0c9c8c943bba1c077fcc6de 129 Pfam PF14250 AbrB-like transcriptional regulator 51 119 7.1E-35 T 06-07-2017 IPR027360 AbrB-like transcriptional regulator APT55_RS23065 5abf5d4afa29569498aea54301caf029 109 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 23 99 4.3E-10 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS23065 5abf5d4afa29569498aea54301caf029 109 SUPERFAMILY SSF54292 15 106 3.6E-18 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT55_RS23065 5abf5d4afa29569498aea54301caf029 109 Gene3D G3DSA:3.10.20.30 15 107 2.3E-19 T 06-07-2017 IPR012675 Beta-grasp domain APT55_RS17865 9458b5d6b69e48b9e4c5ceef8a8adb71 179 Pfam PF04306 Protein of unknown function (DUF456) 22 171 2.5E-28 T 06-07-2017 IPR007403 Protein of unknown function DUF456 APT55_RS23290 d9ab9e71adfa662ecf3fb76d5294550d 138 SUPERFAMILY SSF52980 5 138 1.18E-52 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS23290 d9ab9e71adfa662ecf3fb76d5294550d 138 Gene3D G3DSA:3.40.1350.10 1 138 1.7E-57 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS23290 d9ab9e71adfa662ecf3fb76d5294550d 138 Pfam PF08814 XisH protein 1 133 3.7E-53 T 06-07-2017 IPR014919 XisH protein APT55_RS09000 75fa49d958c41ede1e9f24a5fbba95fb 277 Gene3D G3DSA:3.40.50.1820 44 274 1.5E-62 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS09000 75fa49d958c41ede1e9f24a5fbba95fb 277 SUPERFAMILY SSF53474 43 274 1.72E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS09000 75fa49d958c41ede1e9f24a5fbba95fb 277 Pfam PF01738 Dienelactone hydrolase family 53 274 7.4E-63 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 APT55_RS09750 19c1e1fa10c76b78d0963951b7e0ad1a 120 Pfam PF00741 Gas vesicle protein 9 47 4.4E-17 T 06-07-2017 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 APT55_RS09750 19c1e1fa10c76b78d0963951b7e0ad1a 120 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 10 24 - T 06-07-2017 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 APT55_RS14705 6e17e1581b51fb2fae18ebd6f5f4a2b8 239 Gene3D G3DSA:3.40.50.300 5 224 2.0E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS14705 6e17e1581b51fb2fae18ebd6f5f4a2b8 239 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS14705 6e17e1581b51fb2fae18ebd6f5f4a2b8 239 SMART SM00382 35 222 2.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS14705 6e17e1581b51fb2fae18ebd6f5f4a2b8 239 Pfam PF00005 ABC transporter 27 174 7.7E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS14705 6e17e1581b51fb2fae18ebd6f5f4a2b8 239 SUPERFAMILY SSF52540 6 225 5.32E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS00980 5dea531a4339ee131de5164d33c63b9c 170 Pfam PF10989 Protein of unknown function (DUF2808) 31 169 9.2E-44 T 06-07-2017 IPR021256 Protein of unknown function DUF2808 APT55_RS20755 b9e249472b922838516d7e8b61f09d65 143 SUPERFAMILY SSF55961 7 141 1.69E-27 T 06-07-2017 APT55_RS20755 b9e249472b922838516d7e8b61f09d65 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 13 129 1.7E-19 T 06-07-2017 IPR005031 Coenzyme Q-binding protein COQ10, START domain APT55_RS20755 b9e249472b922838516d7e8b61f09d65 143 Gene3D G3DSA:3.30.530.20 9 136 6.2E-12 T 06-07-2017 IPR023393 START-like domain APT55_RS07135 415826f5d274a60a412ca3deb2a39cc4 309 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 56 305 4.3E-31 T 06-07-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 APT55_RS07135 415826f5d274a60a412ca3deb2a39cc4 309 Gene3D G3DSA:3.60.130.10 22 307 1.7E-34 T 06-07-2017 APT55_RS07135 415826f5d274a60a412ca3deb2a39cc4 309 SUPERFAMILY SSF51197 34 307 1.05E-41 T 06-07-2017 APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 SMART SM00493 85 170 3.8E-11 T 06-07-2017 IPR006171 Toprim domain APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 SUPERFAMILY SSF111304 8 202 1.96E-72 T 06-07-2017 IPR023627 Recombination protein RecR APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 Pfam PF13662 Toprim domain 86 175 4.7E-23 T 06-07-2017 IPR006171 Toprim domain APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 TIGRFAM TIGR00615 recR: recombination protein RecR 7 200 1.6E-81 T 06-07-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 Hamap MF_00017 Recombination protein RecR [recR]. 1 202 98.015 T 06-07-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 ProSitePatterns PS01300 RecR protein signature. 62 83 - T 06-07-2017 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 APT55_RS11405 b84d86a0d9276982740e58ebdf759b29 203 Pfam PF02132 RecR protein 44 83 1.6E-14 T 06-07-2017 IPR023628 Recombination protein RecR, C4-type zinc finger APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 Gene3D G3DSA:3.30.70.1450 164 231 2.2E-15 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 SUPERFAMILY SSF51735 20 153 1.77E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 Pfam PF02080 TrkA-C domain 170 231 8.2E-10 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 SUPERFAMILY SSF116726 149 231 1.57E-16 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 Pfam PF02254 TrkA-N domain 21 138 2.8E-23 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT55_RS12850 5c08b8a157739ff67b7c5ef3e6c7c94c 233 Gene3D G3DSA:3.40.50.720 16 156 1.1E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS23030 6aad2d493382a5925d6407a3a624ed0b 299 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 70 92 - T 06-07-2017 IPR030470 UbiA prenyltransferase conserved site APT55_RS23030 6aad2d493382a5925d6407a3a624ed0b 299 Pfam PF01040 UbiA prenyltransferase family 32 279 1.2E-51 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 APT55_RS23030 6aad2d493382a5925d6407a3a624ed0b 299 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 13 298 3.0E-89 T 06-07-2017 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 APT55_RS01525 e2f91a6d532fe5ae7f2b187770e66d44 142 SUPERFAMILY SSF161084 10 135 4.84E-28 T 06-07-2017 APT55_RS01525 e2f91a6d532fe5ae7f2b187770e66d44 142 Pfam PF01124 MAPEG family 11 138 1.2E-25 T 06-07-2017 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein APT55_RS01525 e2f91a6d532fe5ae7f2b187770e66d44 142 Gene3D G3DSA:1.20.120.550 9 140 4.1E-23 T 06-07-2017 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain APT55_RS18975 9478ac233b5776906078477abbcf783b 407 Pfam PF00534 Glycosyl transferases group 1 223 378 4.7E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS18975 9478ac233b5776906078477abbcf783b 407 Gene3D G3DSA:3.40.50.2000 200 378 9.2E-25 T 06-07-2017 APT55_RS18975 9478ac233b5776906078477abbcf783b 407 Pfam PF13439 Glycosyltransferase Family 4 12 210 7.6E-13 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS18975 9478ac233b5776906078477abbcf783b 407 SUPERFAMILY SSF53756 4 403 5.23E-61 T 06-07-2017 APT55_RS11065 6cfdb291bcf4f1652511f66a9f8a6501 419 Pfam PF02601 Exonuclease VII, large subunit 336 402 7.8E-13 T 06-07-2017 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 APT55_RS11065 6cfdb291bcf4f1652511f66a9f8a6501 419 Pfam PF02601 Exonuclease VII, large subunit 134 353 4.2E-67 T 06-07-2017 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 APT55_RS11065 6cfdb291bcf4f1652511f66a9f8a6501 419 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 12 405 24.048 T 06-07-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS11065 6cfdb291bcf4f1652511f66a9f8a6501 419 Pfam PF13742 OB-fold nucleic acid binding domain 15 109 7.3E-20 T 06-07-2017 IPR025824 OB-fold nucleic acid binding domain GO:0003676 APT55_RS11065 6cfdb291bcf4f1652511f66a9f8a6501 419 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 16 404 5.6E-125 T 06-07-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 APT55_RS21315 3cdaafa797455f1e11791515ff9c0b11 437 Pfam PF07005 Putative sugar-binding N-terminal domain 5 239 1.2E-62 T 06-07-2017 IPR010737 Putative sugar-binding, N-terminal domain APT55_RS21315 3cdaafa797455f1e11791515ff9c0b11 437 SUPERFAMILY SSF142764 5 434 9.94E-91 T 06-07-2017 APT55_RS21315 3cdaafa797455f1e11791515ff9c0b11 437 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 263 427 3.1E-37 T 06-07-2017 IPR031475 Putative nucleotide-binding C-terminal domain APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 Gene3D G3DSA:3.40.190.10 120 220 7.5E-17 T 06-07-2017 APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 SMART SM00062 36 267 6.5E-45 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 SUPERFAMILY SSF53850 9 266 1.49E-50 T 06-07-2017 APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 Gene3D G3DSA:3.40.190.10 34 119 1.3E-23 T 06-07-2017 APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 Gene3D G3DSA:3.40.190.10 221 267 1.3E-23 T 06-07-2017 APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 265 6.8E-42 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS01195 17b2e788424a54c04f7f875936ce55ab 299 TIGRFAM TIGR04262 orph_peri_GRRM: extracellular substrate-binding orphan protein, GRRM family 35 276 4.5E-63 T 06-07-2017 IPR026358 Substrate-binding orphan protein, GRRM family APT55_RS04310 f1546d46e5e4e16422289c72c2a3e2f1 413 Gene3D G3DSA:1.20.1250.20 15 197 2.3E-31 T 06-07-2017 APT55_RS04310 f1546d46e5e4e16422289c72c2a3e2f1 413 Gene3D G3DSA:1.20.1250.20 215 402 1.2E-20 T 06-07-2017 APT55_RS04310 f1546d46e5e4e16422289c72c2a3e2f1 413 SUPERFAMILY SSF103473 14 404 6.15E-59 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS04310 f1546d46e5e4e16422289c72c2a3e2f1 413 Pfam PF07690 Major Facilitator Superfamily 19 244 1.4E-26 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS04310 f1546d46e5e4e16422289c72c2a3e2f1 413 Pfam PF07690 Major Facilitator Superfamily 248 400 6.7E-17 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS25595 03e97632d9a10219a0e172c76d966e5b 284 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 81 5.3E-18 T 06-07-2017 IPR013589 Bacterial transglutaminase-like, N-terminal APT55_RS25595 03e97632d9a10219a0e172c76d966e5b 284 Gene3D G3DSA:3.90.260.10 167 239 2.9E-10 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS25595 03e97632d9a10219a0e172c76d966e5b 284 SUPERFAMILY SSF54001 84 259 3.78E-41 T 06-07-2017 APT55_RS25595 03e97632d9a10219a0e172c76d966e5b 284 Pfam PF01841 Transglutaminase-like superfamily 126 232 3.2E-19 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS25595 03e97632d9a10219a0e172c76d966e5b 284 SMART SM00460 170 234 1.8E-21 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS07130 dbbe8db53af770d9b9ace838454229b6 264 SUPERFAMILY SSF48613 51 260 4.7E-34 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS07130 dbbe8db53af770d9b9ace838454229b6 264 Pfam PF14518 Iron-containing redox enzyme 83 231 4.7E-26 T 06-07-2017 IPR028201 PqqC-like protein APT55_RS07130 dbbe8db53af770d9b9ace838454229b6 264 Gene3D G3DSA:1.20.910.10 44 261 3.3E-38 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT55_RS07130 dbbe8db53af770d9b9ace838454229b6 264 SMART SM01236 113 215 1.2E-16 T 06-07-2017 APT55_RS12595 3d747355d231d5658a05f5613e4c4798 63 Pfam PF11688 Protein of unknown function (DUF3285) 20 63 8.9E-28 T 06-07-2017 IPR021702 Protein of unknown function DUF3285 APT55_RS02470 4aeb586aa80276106010d28b9bf8d019 401 Pfam PF02401 LytB protein 57 392 1.2E-83 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 APT55_RS02470 4aeb586aa80276106010d28b9bf8d019 401 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 55 396 29.302 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 APT55_RS02470 4aeb586aa80276106010d28b9bf8d019 401 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 56 393 1.3E-96 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 APT55_RS31240 2cdfc2155c874c58718e5873e472fce0 371 Pfam PF06250 Protein of unknown function (DUF1016) 40 355 4.9E-124 T 06-07-2017 IPR009362 Protein of unknown function DUF1016 APT55_RS00325 6526519ee76d521485399302f870e5a5 224 SUPERFAMILY SSF54909 13 97 4.96E-11 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS00325 6526519ee76d521485399302f870e5a5 224 Gene3D G3DSA:3.30.70.900 15 112 1.8E-4 T 06-07-2017 APT55_RS04190 add9d8060af1d7ef024a1b6e8e9dd23e 77 SMART SM00530 9 66 7.7E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS04190 add9d8060af1d7ef024a1b6e8e9dd23e 77 Gene3D G3DSA:1.10.260.40 10 66 2.8E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS04190 add9d8060af1d7ef024a1b6e8e9dd23e 77 Pfam PF13560 Helix-turn-helix domain 8 62 4.3E-11 T 06-07-2017 APT55_RS04190 add9d8060af1d7ef024a1b6e8e9dd23e 77 SUPERFAMILY SSF47413 4 68 2.02E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 SUPERFAMILY SSF116726 672 746 2.09E-17 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 SUPERFAMILY SSF51735 413 551 2.71E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 SUPERFAMILY SSF116726 587 661 2.22E-14 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Pfam PF02254 TrkA-N domain 417 532 4.9E-28 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Gene3D G3DSA:3.30.70.1450 675 747 1.9E-19 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Gene3D G3DSA:3.30.70.1450 591 663 3.3E-16 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Pfam PF00999 Sodium/hydrogen exchanger family 14 379 4.6E-78 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Pfam PF02080 TrkA-C domain 594 661 1.4E-12 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Pfam PF02080 TrkA-C domain 679 744 2.7E-12 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT55_RS16460 6a71b1bdc575aa69880e44ebcc814def 764 Gene3D G3DSA:3.40.50.720 414 545 9.4E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS24890 b2a0015834ee4656598eefad799eb925 307 Pfam PF16734 Type IV pilin-like G and H, putative 183 288 2.7E-15 T 06-07-2017 IPR031975 Type IV pilin-like putative secretion pathway protein G/H APT55_RS10840 1a5d5277ef43fbb9c0405164bacde2db 31 Hamap MF_00828 Photosystem I reaction center subunit XII [psaM]. 2 31 15.64 T 06-07-2017 IPR010010 Photosystem I PsaM, reaction centre GO:0015979 APT55_RS10840 1a5d5277ef43fbb9c0405164bacde2db 31 TIGRFAM TIGR03053 PS_I_psaM: photosystem I reaction center subunit XII 3 31 1.2E-17 T 06-07-2017 IPR010010 Photosystem I PsaM, reaction centre GO:0015979 APT55_RS10840 1a5d5277ef43fbb9c0405164bacde2db 31 SUPERFAMILY SSF81548 1 31 5.89E-11 T 06-07-2017 APT55_RS10840 1a5d5277ef43fbb9c0405164bacde2db 31 Pfam PF07465 Photosystem I protein M (PsaM) 3 31 1.2E-18 T 06-07-2017 IPR010010 Photosystem I PsaM, reaction centre GO:0015979 APT55_RS23375 2fa301b2550767c48fc2c2d546f1c8b0 433 SUPERFAMILY SSF52540 9 271 1.44E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS23375 2fa301b2550767c48fc2c2d546f1c8b0 433 Pfam PF13401 AAA domain 38 175 9.2E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS23375 2fa301b2550767c48fc2c2d546f1c8b0 433 Gene3D G3DSA:3.40.50.300 8 178 1.2E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09575 22eda3c26a8f90fd19102319fdafb0d5 318 Pfam PF02687 FtsX-like permease family 196 318 3.0E-9 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS09575 22eda3c26a8f90fd19102319fdafb0d5 318 PIRSF PIRSF003097 21 318 7.9E-72 T 06-07-2017 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00502 Phycobilisome protein 24 77 3.8E-9 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00502 Phycobilisome protein 152 238 8.3E-13 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00427 Phycobilisome Linker polypeptide 743 869 1.5E-44 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00427 Phycobilisome Linker polypeptide 548 671 3.2E-42 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00427 Phycobilisome Linker polypeptide 959 1084 4.7E-42 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Pfam PF00427 Phycobilisome Linker polypeptide 282 407 7.9E-45 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Gene3D G3DSA:1.10.490.20 17 76 5.6E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 Gene3D G3DSA:1.10.490.20 139 240 5.6E-60 T 06-07-2017 IPR012128 Phycobilisome, alpha/beta subunit GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 961 1084 5.0E-42 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 735 869 2.0E-56 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 279 413 4.0E-64 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 548 671 1.0E-54 T 06-07-2017 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 SUPERFAMILY SSF46458 139 239 4.32E-42 T 06-07-2017 IPR009050 Globin-like APT55_RS10260 fe98a748b0c9472d341a1a381323336b 1091 SUPERFAMILY SSF46458 17 76 4.32E-42 T 06-07-2017 IPR009050 Globin-like APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 Pfam PF00361 Proton-conducting membrane transporter 126 419 1.5E-69 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 2 484 1.2E-167 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 233 257 7.6E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 7.6E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 321 340 7.6E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 7.6E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS05740 a2721867816374a24fbe9b22586a5aa7 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 376 402 7.6E-36 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS03995 299fa754a25a9d183e85d2ed407817ff 384 Pfam PF02470 MlaD protein 40 113 5.6E-16 T 06-07-2017 IPR003399 Mce/MlaD APT55_RS23220 9153c5048c0f9cb3205e8adfc7d05021 246 Pfam PF11353 Protein of unknown function (DUF3153) 13 242 4.3E-44 T 06-07-2017 IPR021499 Protein of unknown function DUF3153 APT55_RS25290 46178243f9e75c4bf8e4b52fe25bb2be 202 Pfam PF00188 Cysteine-rich secretory protein family 84 190 5.7E-21 T 06-07-2017 IPR014044 CAP domain APT55_RS25290 46178243f9e75c4bf8e4b52fe25bb2be 202 Gene3D G3DSA:3.40.33.10 78 187 8.6E-15 T 06-07-2017 IPR014044 CAP domain APT55_RS25290 46178243f9e75c4bf8e4b52fe25bb2be 202 SUPERFAMILY SSF55797 78 196 8.89E-27 T 06-07-2017 IPR014044 CAP domain APT55_RS31410 85629ff6fbd68f43ec1e75d9982d37a9 288 Pfam PF03787 RAMP superfamily 9 269 2.1E-15 T 06-07-2017 IPR005537 CRISPR type III-associated RAMP protein APT55_RS31410 85629ff6fbd68f43ec1e75d9982d37a9 288 TIGRFAM TIGR02580 cas_RAMP_Cmr4: CRISPR type III-B/RAMP module RAMP protein Cmr4 10 270 1.3E-25 T 06-07-2017 IPR013410 CRISPR-associated RAMP Cmr4 APT55_RS29170 31519d753c2bb86cffec5223a5c5bc7b 393 Gene3D G3DSA:3.40.50.2300 178 323 1.1E-42 T 06-07-2017 APT55_RS29170 31519d753c2bb86cffec5223a5c5bc7b 393 Gene3D G3DSA:3.40.50.2300 52 177 4.1E-29 T 06-07-2017 APT55_RS29170 31519d753c2bb86cffec5223a5c5bc7b 393 Pfam PF02608 Basic membrane protein 56 344 6.5E-38 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT55_RS27785 5af022f73ea013aaac8b80cd9215a6b7 471 PIRSF PIRSF016636 1 471 8.2E-150 T 06-07-2017 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB APT55_RS27785 5af022f73ea013aaac8b80cd9215a6b7 471 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 377 5.9E-25 T 06-07-2017 IPR004299 Membrane bound O-acyl transferase, MBOAT APT55_RS27785 5af022f73ea013aaac8b80cd9215a6b7 471 PIRSF PIRSF500217 1 471 3.1E-153 T 06-07-2017 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 APT55_RS07970 6bc406c6ae1aa5cd32d1a979af9f25ab 89 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 22 77 3.3E-17 T 06-07-2017 IPR018684 Protein of unknown function DUF2171 APT55_RS18445 8412708a8c09f9e48ac71c249eacadd7 162 Pfam PF00583 Acetyltransferase (GNAT) family 65 143 1.8E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS18445 8412708a8c09f9e48ac71c249eacadd7 162 Gene3D G3DSA:3.40.630.30 8 143 2.7E-27 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS18445 8412708a8c09f9e48ac71c249eacadd7 162 SUPERFAMILY SSF55729 9 143 3.76E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS02825 c188d8fec538f1998c76ec720632bf06 350 SMART SM00062 65 293 1.5E-15 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT55_RS02825 c188d8fec538f1998c76ec720632bf06 350 SUPERFAMILY SSF53850 85 299 1.82E-50 T 06-07-2017 APT55_RS02825 c188d8fec538f1998c76ec720632bf06 350 Pfam PF09084 NMT1/THI5 like 109 285 9.0E-19 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS02825 c188d8fec538f1998c76ec720632bf06 350 Gene3D G3DSA:3.40.190.10 149 271 6.5E-31 T 06-07-2017 APT55_RS02825 c188d8fec538f1998c76ec720632bf06 350 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 66 347 4.4E-77 T 06-07-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 Gene3D G3DSA:1.10.10.10 118 175 1.0E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 129 143 2.8E-5 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 171 2.8E-5 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 159 2.8E-5 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 SMART SM00421 126 177 0.0037 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 SUPERFAMILY SSF46894 115 174 1.7E-12 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS04915 91e65cca82c0a9753a757729949d1f60 179 Pfam PF00196 Bacterial regulatory proteins, luxR family 129 174 6.3E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS28035 45e43c4ff9006bdce5cfe5b191ec3063 193 SUPERFAMILY SSF81342 11 192 1.96E-23 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT55_RS28035 45e43c4ff9006bdce5cfe5b191ec3063 193 Gene3D G3DSA:1.20.950.20 12 192 4.6E-25 T 06-07-2017 APT55_RS28035 45e43c4ff9006bdce5cfe5b191ec3063 193 Pfam PF01292 Prokaryotic cytochrome b561 10 192 1.0E-18 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT55_RS09970 58e6cfc4c0404fcf6b8a6b448d905d4c 195 Pfam PF11371 Protein of unknown function (DUF3172) 40 180 5.5E-60 T 06-07-2017 IPR021511 Protein of unknown function DUF3172 APT55_RS14280 6d24676907c09c620f836ba32e9f09fe 127 Pfam PF03625 Domain of unknown function DUF302 35 97 8.5E-24 T 06-07-2017 IPR005180 Domain of unknown function DUF302 APT55_RS14280 6d24676907c09c620f836ba32e9f09fe 127 PIRSF PIRSF021774 1 127 3.0E-41 T 06-07-2017 IPR016796 Uncharacterised conserved protein UCP021774 APT55_RS14280 6d24676907c09c620f836ba32e9f09fe 127 Gene3D G3DSA:3.30.310.70 3 126 4.3E-45 T 06-07-2017 IPR005180 Domain of unknown function DUF302 APT55_RS14280 6d24676907c09c620f836ba32e9f09fe 127 SUPERFAMILY SSF103247 1 126 2.62E-35 T 06-07-2017 IPR005180 Domain of unknown function DUF302 APT55_RS16290 7e7b3e586dd8a19780d9661f8f2d8cf9 192 Gene3D G3DSA:1.20.1540.10 26 186 3.9E-14 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS16290 7e7b3e586dd8a19780d9661f8f2d8cf9 192 SUPERFAMILY SSF144091 22 189 6.41E-27 T 06-07-2017 APT55_RS16290 7e7b3e586dd8a19780d9661f8f2d8cf9 192 Pfam PF01694 Rhomboid family 60 188 2.5E-19 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 APT55_RS08770 5c93112d839bb23d339f9ef49f63274c 115 Pfam PF06108 Protein of unknown function (DUF952) 10 97 1.8E-29 T 06-07-2017 IPR009297 Protein of unknown function DUF952 APT55_RS08770 5c93112d839bb23d339f9ef49f63274c 115 SUPERFAMILY SSF56399 6 114 2.88E-32 T 06-07-2017 APT55_RS28830 91d85e338149cf85f406650e4d533df9 74 Pfam PF02672 CP12 domain 4 73 6.6E-30 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS28830 91d85e338149cf85f406650e4d533df9 74 SMART SM01093 4 74 2.2E-34 T 06-07-2017 IPR003823 Domain of unknown function CP12 APT55_RS13205 7b04ca05695ded0f6ef7efb51d60e543 359 Pfam PF14258 Domain of unknown function (DUF4350) 39 105 5.5E-11 T 06-07-2017 IPR025646 Domain of unknown function DUF4350 APT55_RS08705 7687e48eef12be7e1b110bc61fe71100 197 Pfam PF05685 Putative restriction endonuclease 11 185 5.5E-29 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS08705 7687e48eef12be7e1b110bc61fe71100 197 Gene3D G3DSA:3.90.1570.10 1 189 2.7E-15 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS08705 7687e48eef12be7e1b110bc61fe71100 197 SUPERFAMILY SSF52980 2 189 1.82E-16 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS08415 2a22c10775a9fbb042e266159c8fdf51 141 Pfam PF01850 PIN domain 10 123 2.1E-11 T 06-07-2017 IPR002716 PIN domain APT55_RS08415 2a22c10775a9fbb042e266159c8fdf51 141 Gene3D G3DSA:3.40.50.1010 10 123 8.4E-9 T 06-07-2017 IPR029060 PIN domain-like APT55_RS08415 2a22c10775a9fbb042e266159c8fdf51 141 SUPERFAMILY SSF88723 10 125 2.41E-18 T 06-07-2017 IPR029060 PIN domain-like APT55_RS09345 e3695cf4aa15c63000055b076eb3e075 237 Gene3D G3DSA:3.30.70.1070 117 192 1.8E-4 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 APT55_RS25420 d27215e253aaa1371bda78118d58b965 279 SUPERFAMILY SSF161098 77 255 6.41E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS25420 d27215e253aaa1371bda78118d58b965 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 269 2.3E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS25420 d27215e253aaa1371bda78118d58b965 279 Gene3D G3DSA:1.10.3720.10 79 266 6.9E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 APT55_RS03015 d6e18f36eae6b9597cf2fa34d850de24 217 Pfam PF14230 Domain of unknown function (DUF4333) 16 78 3.7E-11 T 06-07-2017 IPR025637 Domain of unknown function DUF4333 APT55_RS16635 b4ede7098fd6770cd0bd5638a9359dc3 176 Pfam PF01724 Domain of unknown function DUF29 29 166 3.6E-51 T 06-07-2017 IPR002636 Protein from unkown function DUF29 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 SUPERFAMILY SSF51905 457 495 4.03E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 SUPERFAMILY SSF51905 11 334 4.03E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 Pfam PF01593 Flavin containing amine oxidoreductase 20 494 2.6E-17 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 Gene3D G3DSA:3.50.50.60 178 179 8.3E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 Gene3D G3DSA:3.50.50.60 11 91 8.3E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27175 57b4bb16b6190bda61dccc28c184badb 508 Gene3D G3DSA:3.50.50.60 237 352 8.3E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS27255 60c4d99b74ac6b1b39771112e2a6b794 695 Pfam PF00226 DnaJ domain 6 67 3.5E-9 T 06-07-2017 IPR001623 DnaJ domain APT55_RS27255 60c4d99b74ac6b1b39771112e2a6b794 695 Pfam PF13355 Protein of unknown function (DUF4101) 578 692 2.5E-29 T 06-07-2017 IPR025344 Domain of unknown function DUF4101 APT55_RS27255 60c4d99b74ac6b1b39771112e2a6b794 695 Gene3D G3DSA:1.10.287.110 5 72 1.5E-8 T 06-07-2017 IPR001623 DnaJ domain APT55_RS27255 60c4d99b74ac6b1b39771112e2a6b794 695 SUPERFAMILY SSF46565 4 70 1.31E-10 T 06-07-2017 IPR001623 DnaJ domain APT55_RS27255 60c4d99b74ac6b1b39771112e2a6b794 695 SMART SM00271 5 62 5.1E-7 T 06-07-2017 IPR001623 DnaJ domain APT55_RS29195 a929409b0cec3da9d477bcb9ee80c05b 227 SUPERFAMILY SSF55166 83 219 2.56E-34 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS29195 a929409b0cec3da9d477bcb9ee80c05b 227 Gene3D G3DSA:3.30.1380.10 85 157 5.1E-5 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS29195 a929409b0cec3da9d477bcb9ee80c05b 227 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 84 211 2.7E-45 T 06-07-2017 IPR003709 Peptidase M15B GO:0006508|GO:0008233 APT55_RS25725 55652cee331a372d64823a6541204f5e 107 Pfam PF05542 Protein of unknown function (DUF760) 21 102 6.6E-30 T 06-07-2017 IPR008479 Protein of unknown function DUF760 APT55_RS28740 7a2a9e9057bd417e7bd24174b3df48ed 186 SUPERFAMILY SSF159275 8 183 3.66E-46 T 06-07-2017 APT55_RS28740 7a2a9e9057bd417e7bd24174b3df48ed 186 Pfam PF06475 Putative glycolipid-binding 11 183 6.0E-45 T 06-07-2017 IPR009467 Putative glycolipid-binding protein APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 Pfam PF00487 Fatty acid desaturase 36 251 8.3E-15 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 13 33 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 80 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 97 126 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 37 59 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 223 237 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS01130 c0a85e7f61b94d2a709dc89981a472b0 273 PRINTS PR00075 Fatty acid desaturase family 1 signature 180 201 3.4E-33 T 06-07-2017 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT55_RS13340 9d2342c782af80337f019d87d6fccaea 124 Gene3D G3DSA:3.40.50.150 3 115 2.3E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS13340 9d2342c782af80337f019d87d6fccaea 124 SUPERFAMILY SSF53335 3 116 1.59E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS13340 9d2342c782af80337f019d87d6fccaea 124 Pfam PF13649 Methyltransferase domain 45 115 5.7E-10 T 06-07-2017 APT55_RS18000 3cc8ed2f546ac34927567be8faadd830 105 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 33 99 7.4E-15 T 06-07-2017 IPR008792 Coenzyme PQQ synthesis D APT55_RS25355 82c52da98591468d72b372dac9a38a99 230 Pfam PF06055 Exopolysaccharide synthesis, ExoD 39 206 2.4E-61 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD APT55_RS28285 1ea072b3e7fed95361a4dd27d39900c5 127 Pfam PF11026 Protein of unknown function (DUF2721) 13 123 2.6E-14 T 06-07-2017 IPR021279 Protein of unknown function DUF2721 APT55_RS29535 2f442e50b8fc99c14acf611bafa65dfc 202 Pfam PF11753 Protein of unknwon function (DUF3310) 6 75 1.0E-13 T 06-07-2017 IPR021739 Protein of unknwon function DUF3310 APT55_RS10980 97eb3917e79f7ec34db03dd910b701e8 209 SMART SM00563 44 161 8.5E-25 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS10980 97eb3917e79f7ec34db03dd910b701e8 209 SUPERFAMILY SSF69593 14 207 3.4E-33 T 06-07-2017 APT55_RS10980 97eb3917e79f7ec34db03dd910b701e8 209 Pfam PF01553 Acyltransferase 30 157 3.8E-21 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 APT55_RS10980 97eb3917e79f7ec34db03dd910b701e8 209 Gene3D G3DSA:3.40.1130.10 33 206 8.6E-16 T 06-07-2017 APT55_RS29020 1cf6b11332d88e447b5c4058a45cef5c 323 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 3 306 9.1E-83 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 APT55_RS29020 1cf6b11332d88e447b5c4058a45cef5c 323 Pfam PF03186 CobD/Cbib protein 6 296 7.0E-92 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 APT55_RS29020 1cf6b11332d88e447b5c4058a45cef5c 323 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 321 86.934 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 APT55_RS04235 5b63870f3c605cc548876915ee228fb6 87 Pfam PF11344 Protein of unknown function (DUF3146) 7 85 2.2E-43 T 06-07-2017 IPR021492 Protein of unknown function DUF3146 APT55_RS09065 aec291049d092ee1048afb6035e966a2 278 SUPERFAMILY SSF52540 42 273 1.24E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09065 aec291049d092ee1048afb6035e966a2 278 Gene3D G3DSA:3.40.50.300 44 193 9.9E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS09065 aec291049d092ee1048afb6035e966a2 278 Pfam PF05621 Bacterial TniB protein 38 266 1.5E-49 T 06-07-2017 IPR008868 Bacterial TniB APT55_RS16420 63a43bccf8b15a9a400a91ea187ae502 34 Hamap MF_00396 Cytochrome b6-f complex subunit 7 [petM]. 1 32 14.763 T 06-07-2017 IPR012595 PetM of cytochrome b6/f complex subunit 7 GO:0009512 APT55_RS16420 63a43bccf8b15a9a400a91ea187ae502 34 SUPERFAMILY SSF103441 2 30 4.71E-6 T 06-07-2017 APT55_RS16420 63a43bccf8b15a9a400a91ea187ae502 34 Pfam PF08041 PetM family of cytochrome b6f complex subunit 7 3 32 1.2E-16 T 06-07-2017 IPR012595 PetM of cytochrome b6/f complex subunit 7 GO:0009512 APT55_RS14655 7cc6a8a0d5fe5343b995b7c5be2f2d42 223 Pfam PF06467 MYM-type Zinc finger with FCS sequence motif 7 42 6.8E-6 T 06-07-2017 IPR010507 Zinc finger, MYM-type GO:0008270 APT55_RS14655 7cc6a8a0d5fe5343b995b7c5be2f2d42 223 Pfam PF13391 HNH endonuclease 154 207 3.4E-6 T 06-07-2017 IPR003615 HNH nuclease APT55_RS08035 41fe735aa67a70b29fc3d5169e8c9d43 131 Gene3D G3DSA:3.40.50.1010 1 123 7.6E-10 T 06-07-2017 IPR029060 PIN domain-like APT55_RS08035 41fe735aa67a70b29fc3d5169e8c9d43 131 SUPERFAMILY SSF88723 1 122 2.3E-16 T 06-07-2017 IPR029060 PIN domain-like APT55_RS08035 41fe735aa67a70b29fc3d5169e8c9d43 131 Pfam PF01850 PIN domain 3 121 8.0E-11 T 06-07-2017 IPR002716 PIN domain APT55_RS05950 a61dd8496e12adca0a89f4628f500738 154 Gene3D G3DSA:1.10.10.10 22 87 2.6E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS05950 a61dd8496e12adca0a89f4628f500738 154 Pfam PF01726 LexA DNA binding domain 22 84 6.3E-13 T 06-07-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APT55_RS05950 a61dd8496e12adca0a89f4628f500738 154 SUPERFAMILY SSF46785 22 87 1.18E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS09005 6f0fa7362f2a0e18ca9221bbb49fd610 97 Gene3D G3DSA:3.40.50.1820 3 66 5.2E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS12770 32b0d1a0a3050b434c911ce4cb4fef24 430 Pfam PF04932 O-Antigen ligase 201 344 5.5E-8 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS18790 7c468c4e262118b9bd940e9331a5e5aa 318 Pfam PF06089 L-asparaginase II 15 301 5.6E-102 T 06-07-2017 IPR010349 L-asparaginase II APT55_RS27585 3840ce16c11493780b290d0b3aed32f7 257 Pfam PF13911 AhpC/TSA antioxidant enzyme 51 236 2.8E-34 T 06-07-2017 IPR032801 Peroxiredoxin-like FAM213/AAED1 APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 31 104 2.2E-26 T 06-07-2017 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 174 229 4.1E-6 T 06-07-2017 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 SUPERFAMILY SSF101386 8 106 9.72E-23 T 06-07-2017 APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 SUPERFAMILY SSF101386 142 237 6.54E-22 T 06-07-2017 APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 TIGRFAM TIGR00444 mazG: MazG family protein 14 257 1.5E-97 T 06-07-2017 IPR011551 NTP pyrophosphohydrolase MazG APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 Gene3D G3DSA:1.10.287.1080 137 221 9.0E-11 T 06-07-2017 APT55_RS23835 8e222d62a5fd5dc599cc68cfe7a22e9b 265 Gene3D G3DSA:1.10.287.1080 5 76 3.2E-9 T 06-07-2017 APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 SUPERFAMILY SSF52402 365 504 5.66E-68 T 06-07-2017 APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 SUPERFAMILY SSF52402 156 307 5.66E-68 T 06-07-2017 APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 Pfam PF13537 Glutamine amidotransferase domain 56 97 6.6E-6 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 PIRSF PIRSF001589 40 512 1.4E-81 T 06-07-2017 APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 Gene3D G3DSA:3.40.50.620 149 304 1.2E-67 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 Gene3D G3DSA:3.40.50.620 361 510 1.2E-67 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 Pfam PF00733 Asparagine synthase 166 510 6.3E-68 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 SUPERFAMILY SSF56235 56 147 2.47E-11 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS17175 1ac7d341cf1bbd0325dd5ee1452b7ae1 513 Gene3D G3DSA:3.60.20.10 57 148 6.1E-19 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS07940 6e3e9cff5d8efeff0672a03924425941 418 Pfam PF12704 MacB-like periplasmic core domain 29 257 3.8E-37 T 06-07-2017 IPR025857 MacB-like periplasmic core domain APT55_RS07940 6e3e9cff5d8efeff0672a03924425941 418 Pfam PF02687 FtsX-like permease family 299 411 2.2E-21 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 APT55_RS08090 ff6b2622d654cb8ea959b258576f5faf 231 Pfam PF09347 Domain of unknown function (DUF1989) 12 175 1.1E-53 T 06-07-2017 IPR018959 Domain of unknown function DUF1989 APT55_RS08090 ff6b2622d654cb8ea959b258576f5faf 231 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 8 230 1.1E-91 T 06-07-2017 IPR017792 Urea carboxylase-associated protein 2 APT55_RS31590 6358f6967881d2d3ae9b34e3cb053b89 623 Gene3D G3DSA:1.10.287.510 264 393 2.6E-7 T 06-07-2017 APT55_RS31590 6358f6967881d2d3ae9b34e3cb053b89 623 Gene3D G3DSA:3.40.50.300 24 91 2.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS25410 fbfaeded45268c09d9675387812a47a4 382 Pfam PF05145 Putative ammonia monooxygenase 46 371 3.7E-59 T 06-07-2017 IPR007820 AbrB family GO:0010468|GO:0016021 APT55_RS25410 fbfaeded45268c09d9675387812a47a4 382 PIRSF PIRSF038991 17 381 5.3E-50 T 06-07-2017 IPR007820 AbrB family GO:0010468|GO:0016021 APT55_RS28515 51b62ea598558e5a0cdeb25d88029855 150 Pfam PF10706 Aminoglycoside-2''-adenylyltransferase 1 129 9.6E-65 T 06-07-2017 IPR019646 Aminoglycoside-2''-adenylyltransferase APT55_RS19500 3bbaada6cbd1ea2a5944e673d6c54d37 74 SUPERFAMILY SSF47413 3 64 1.45E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS19500 3bbaada6cbd1ea2a5944e673d6c54d37 74 SMART SM00530 6 62 6.1E-14 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS19500 3bbaada6cbd1ea2a5944e673d6c54d37 74 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 67 4.5E-16 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT55_RS19500 3bbaada6cbd1ea2a5944e673d6c54d37 74 Gene3D G3DSA:1.10.260.40 2 64 4.9E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS22855 5018440c8dc659d372f9278081889abc 161 Gene3D G3DSA:3.40.630.30 1 161 5.3E-39 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS22855 5018440c8dc659d372f9278081889abc 161 SUPERFAMILY SSF55729 1 157 1.66E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS22855 5018440c8dc659d372f9278081889abc 161 Pfam PF13420 Acetyltransferase (GNAT) domain 2 141 6.5E-16 T 06-07-2017 APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 SUPERFAMILY SSF53474 26 274 2.81E-54 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 Gene3D G3DSA:3.40.50.1820 26 274 4.6E-53 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 2.1E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 2.1E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 2.1E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 221 235 2.1E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS17275 df0e6d48511bf55a6a90f98443760fd4 279 Pfam PF00561 alpha/beta hydrolase fold 35 135 4.6E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS01030 c95393fa065c0e7351cda7cce59db9ac 92 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 1 92 23.193 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 APT55_RS01030 c95393fa065c0e7351cda7cce59db9ac 92 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 3 90 2.4E-30 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 APT55_RS01030 c95393fa065c0e7351cda7cce59db9ac 92 Gene3D G3DSA:3.30.1360.20 2 92 2.1E-32 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 APT55_RS01030 c95393fa065c0e7351cda7cce59db9ac 92 SUPERFAMILY SSF55248 2 92 3.53E-31 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 APT55_RS24025 ab9a34a72f48628bf8857d493968856a 69 Gene3D G3DSA:3.30.920.30 2 68 9.5E-22 T 06-07-2017 APT55_RS24025 ab9a34a72f48628bf8857d493968856a 69 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 8 63 7.3E-19 T 06-07-2017 IPR012933 HicA mRNA interferase family GO:0003729 APT55_RS24025 ab9a34a72f48628bf8857d493968856a 69 SUPERFAMILY SSF54786 1 68 7.06E-18 T 06-07-2017 APT55_RS11920 81344f791236bda4c53cb31bcbb05c27 253 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 225 249 2.8E-5 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS11920 81344f791236bda4c53cb31bcbb05c27 253 Pfam PF07589 PEP-CTERM motif 224 248 2.0E-4 T 06-07-2017 IPR013424 PEP-CTERM protein-sorting domain APT55_RS27590 ac79a465e1e941b2173653d69aa33d21 273 Gene3D G3DSA:3.40.50.150 9 271 5.7E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS27590 ac79a465e1e941b2173653d69aa33d21 273 Pfam PF01209 ubiE/COQ5 methyltransferase family 8 149 1.1E-25 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT55_RS27590 ac79a465e1e941b2173653d69aa33d21 273 SUPERFAMILY SSF53335 11 270 5.43E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS18985 f4cf18e71c03cc4db9db82702874052a 84 Gene3D G3DSA:1.20.860.20 22 81 8.5E-20 T 06-07-2017 IPR017492 Photosystem I PsaK, reaction centre GO:0009522|GO:0015979|GO:0042651 APT55_RS18985 f4cf18e71c03cc4db9db82702874052a 84 Pfam PF01241 Photosystem I psaG / psaK 21 81 2.7E-5 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS18985 f4cf18e71c03cc4db9db82702874052a 84 SUPERFAMILY SSF81563 22 78 9.94E-13 T 06-07-2017 IPR000549 Photosystem I PsaG/PsaK protein GO:0009522|GO:0015979|GO:0016020 APT55_RS03070 299204f5a2df4ffe5edbe35bc7286122 213 Pfam PF03596 Cadmium resistance transporter 17 204 7.7E-37 T 06-07-2017 IPR004676 Cadmium resistance transporter APT55_RS17350 9d63f3469761cbec75ca3bd04e4c7241 552 Pfam PF01740 STAS domain 438 534 6.3E-13 T 06-07-2017 IPR002645 STAS domain APT55_RS17350 9d63f3469761cbec75ca3bd04e4c7241 552 SUPERFAMILY SSF52091 440 542 9.22E-13 T 06-07-2017 IPR002645 STAS domain APT55_RS17350 9d63f3469761cbec75ca3bd04e4c7241 552 Gene3D G3DSA:3.30.750.24 439 541 2.6E-12 T 06-07-2017 IPR002645 STAS domain APT55_RS17350 9d63f3469761cbec75ca3bd04e4c7241 552 Pfam PF00916 Sulfate permease family 12 377 8.4E-91 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APT55_RS09740 0aa2fb0dce47b034981bcc871b3fda62 245 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 4 240 6.8E-63 T 06-07-2017 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 APT55_RS08375 e21390f07257a32750a288d5e217dde9 110 SUPERFAMILY SSF54913 4 104 4.13E-18 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT55_RS30105 8e9924bc8b51e14d1b75c5d719f5864e 69 Pfam PF10718 Hypothetical chloroplast protein Ycf34 1 64 9.2E-25 T 06-07-2017 IPR019656 Uncharacterised protein family Ycf34 APT55_RS27530 7bbf952d2315b668a9930e52b533e9cf 149 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 135 3.6E-17 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS27530 7bbf952d2315b668a9930e52b533e9cf 149 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 2.7E-16 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS27530 7bbf952d2315b668a9930e52b533e9cf 149 SUPERFAMILY SSF81923 3 138 3.04E-29 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS27530 7bbf952d2315b668a9930e52b533e9cf 149 Gene3D G3DSA:1.10.1780.10 1 136 5.5E-46 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 APT55_RS30885 519398bf74f9f8ee61fc33db67ae961c 182 Pfam PF05227 CHASE3 domain 44 173 1.4E-33 T 06-07-2017 IPR007891 CHASE3 APT55_RS25240 53d82186c78cd33403641ea6f142dce9 420 Pfam PF12471 GTP cyclohydrolase N terminal 13 199 4.9E-80 T 06-07-2017 IPR022163 GTP cyclohydrolase N-terminal APT55_RS25240 53d82186c78cd33403641ea6f142dce9 420 SUPERFAMILY SSF142695 204 378 1.05E-33 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS25240 53d82186c78cd33403641ea6f142dce9 420 Pfam PF00925 GTP cyclohydrolase II 237 376 9.5E-17 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 APT55_RS05170 6d5a70f02c96bbc7cb9f99c625c2a556 155 Gene3D G3DSA:3.40.630.30 13 134 2.3E-30 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS05170 6d5a70f02c96bbc7cb9f99c625c2a556 155 Pfam PF00583 Acetyltransferase (GNAT) family 52 125 1.3E-13 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS05170 6d5a70f02c96bbc7cb9f99c625c2a556 155 SUPERFAMILY SSF55729 14 135 1.36E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS03890 28b0e5bdb8d1897c5d83e3431d9a94c8 315 Gene3D G3DSA:3.90.550.10 6 261 8.2E-9 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS03890 28b0e5bdb8d1897c5d83e3431d9a94c8 315 SUPERFAMILY SSF53448 3 261 7.31E-21 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00300 5b3d84b8f3159ae79525867eadb3c1f5 240 Pfam PF11320 Protein of unknown function (DUF3122) 29 155 1.2E-36 T 06-07-2017 IPR021469 Protein of unknown function DUF3122 APT55_RS19250 f00e6c1841be41d071d732ac33940c4a 173 Pfam PF00805 Pentapeptide repeats (8 copies) 108 142 3.9E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS19250 f00e6c1841be41d071d732ac33940c4a 173 Pfam PF00805 Pentapeptide repeats (8 copies) 65 100 8.6E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS19250 f00e6c1841be41d071d732ac33940c4a 173 SUPERFAMILY SSF141571 42 148 4.19E-26 T 06-07-2017 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 Gene3D G3DSA:1.25.40.10 48 79 3.0E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 Gene3D G3DSA:1.25.40.10 628 661 3.0E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 Gene3D G3DSA:1.25.40.10 134 315 3.0E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 SUPERFAMILY SSF48452 47 83 8.73E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 SUPERFAMILY SSF48452 119 163 8.73E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11795 cb9e1ddf95be39400212ef25b934660d 731 SUPERFAMILY SSF48452 209 271 8.73E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS13410 818bd878976a50744acf0c55a8b2d18a 61 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 06-07-2017 IPR000612 Proteolipid membrane potential modulator GO:0016021 APT55_RS13410 818bd878976a50744acf0c55a8b2d18a 61 Pfam PF01679 Proteolipid membrane potential modulator 3 49 1.1E-17 T 06-07-2017 IPR000612 Proteolipid membrane potential modulator GO:0016021 APT55_RS13890 0d1d32f42817bc31e703eda1c023059f 635 Pfam PF00805 Pentapeptide repeats (8 copies) 232 260 1.1E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS13890 0d1d32f42817bc31e703eda1c023059f 635 Pfam PF00805 Pentapeptide repeats (8 copies) 304 337 6.0E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS13890 0d1d32f42817bc31e703eda1c023059f 635 SUPERFAMILY SSF141571 232 365 2.16E-22 T 06-07-2017 APT55_RS16970 ad96ac061dea08361653f13609272835 121 Gene3D G3DSA:3.40.50.2300 2 119 1.6E-35 T 06-07-2017 APT55_RS16970 ad96ac061dea08361653f13609272835 121 SMART SM00448 2 115 4.8E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16970 ad96ac061dea08361653f13609272835 121 Pfam PF00072 Response regulator receiver domain 4 115 3.7E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS16970 ad96ac061dea08361653f13609272835 121 SUPERFAMILY SSF52172 1 119 1.38E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS08195 a4082c9c0f0a73b2bd9bbc7c98a9e887 468 SUPERFAMILY SSF75304 5 461 5.1E-121 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS08195 a4082c9c0f0a73b2bd9bbc7c98a9e887 468 ProSitePatterns PS00571 Amidases signature. 154 185 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT55_RS08195 a4082c9c0f0a73b2bd9bbc7c98a9e887 468 Pfam PF01425 Amidase 27 444 2.2E-109 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS08195 a4082c9c0f0a73b2bd9bbc7c98a9e887 468 Gene3D G3DSA:3.90.1300.10 5 461 1.1E-114 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT55_RS24880 85fb1d6bf4467d72ef8078ad3a034089 493 Pfam PF12146 Serine aminopeptidase, S33 67 170 1.8E-14 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 APT55_RS24880 85fb1d6bf4467d72ef8078ad3a034089 493 Gene3D G3DSA:3.40.50.1820 56 243 3.2E-28 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS24880 85fb1d6bf4467d72ef8078ad3a034089 493 SUPERFAMILY SSF53474 49 247 1.65E-30 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS22480 6cbf76b44543a3f16197204ada689e94 280 Gene3D G3DSA:3.40.630.10 6 279 4.5E-45 T 06-07-2017 APT55_RS22480 6cbf76b44543a3f16197204ada689e94 280 Pfam PF04389 Peptidase family M28 59 271 1.3E-24 T 06-07-2017 IPR007484 Peptidase M28 APT55_RS22480 6cbf76b44543a3f16197204ada689e94 280 SUPERFAMILY SSF53187 6 277 4.92E-47 T 06-07-2017 APT55_RS14030 fbb37def2f3e6b95cb71808185cdbfaf 70 Pfam PF11160 Protein of unknown function (DUF2945) 8 68 1.7E-24 T 06-07-2017 IPR021331 Protein of unknown function DUF2945 APT55_RS21150 21a326f2021e0ea8c08f8aa4b99e2a08 650 SUPERFAMILY SSF48452 297 465 1.04E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS21150 21a326f2021e0ea8c08f8aa4b99e2a08 650 Gene3D G3DSA:1.25.40.10 324 511 3.9E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS15010 d144d47931b376e9ddd50e9188a88bc1 122 SUPERFAMILY SSF103481 47 120 6.93E-11 T 06-07-2017 APT55_RS19120 d5f1e37b962e9720cc1a4d5a1c9cea2d 226 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 137 7.2E-20 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS27895 530d868e4551f6e7e44d5733244608f4 383 Gene3D G3DSA:3.40.50.2000 168 351 3.7E-28 T 06-07-2017 APT55_RS27895 530d868e4551f6e7e44d5733244608f4 383 SUPERFAMILY SSF53756 14 372 5.5E-62 T 06-07-2017 APT55_RS27895 530d868e4551f6e7e44d5733244608f4 383 Pfam PF00534 Glycosyl transferases group 1 180 350 3.7E-30 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS00825 696353a3b8eb21356b3614fbd450739d 107 Pfam PF05542 Protein of unknown function (DUF760) 23 102 2.0E-25 T 06-07-2017 IPR008479 Protein of unknown function DUF760 APT55_RS30785 f1c7da1b7f88580d9ee55af4fed57054 339 SUPERFAMILY SSF81345 16 333 1.2E-78 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS30785 f1c7da1b7f88580d9ee55af4fed57054 339 Pfam PF01032 FecCD transport family 26 333 3.2E-91 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 APT55_RS30785 f1c7da1b7f88580d9ee55af4fed57054 339 Gene3D G3DSA:1.10.3470.10 19 336 1.4E-96 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS09730 73b65b7940990be4e1faa2a891d00d0c 208 Pfam PF10063 Uncharacterized integral membrane protein (DUF2301) 68 202 3.7E-60 T 06-07-2017 IPR019275 Protein of unknown function DUF2301 APT55_RS09710 bfade77586fb4f744bf51e33c897bb83 396 SUPERFAMILY SSF56349 229 384 1.56E-17 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT55_RS09710 bfade77586fb4f744bf51e33c897bb83 396 Pfam PF00589 Phage integrase family 314 374 2.4E-5 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS09710 bfade77586fb4f744bf51e33c897bb83 396 Gene3D G3DSA:1.10.443.10 229 385 2.0E-12 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT55_RS11130 7316807ab229d9a699659fd19f3d19ac 367 SUPERFAMILY SSF53795 180 226 7.02E-6 T 06-07-2017 APT55_RS11130 7316807ab229d9a699659fd19f3d19ac 367 Gene3D G3DSA:3.40.50.300 181 228 2.0E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS07420 07d28e5ae0cfa940bda62537d185fc77 89 Pfam PF04226 Transglycosylase associated protein 33 86 2.5E-7 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 APT55_RS26840 bb0f6c7398b22a515a3742072abc49dd 323 Gene3D G3DSA:3.40.190.10 117 194 1.0E-15 T 06-07-2017 APT55_RS26840 bb0f6c7398b22a515a3742072abc49dd 323 SUPERFAMILY SSF53850 27 240 9.19E-32 T 06-07-2017 APT55_RS26840 bb0f6c7398b22a515a3742072abc49dd 323 Pfam PF09084 NMT1/THI5 like 44 237 9.7E-18 T 06-07-2017 IPR015168 SsuA/THI5-like APT55_RS10405 2f55acfbb2f19e8d8403774dca8516bb 295 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 31 280 3.9E-34 T 06-07-2017 IPR019127 Exosortase EpsH-related APT55_RS10405 2f55acfbb2f19e8d8403774dca8516bb 295 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 192 281 2.5E-15 T 06-07-2017 IPR026392 Exosortase/Archaeosortase domain APT55_RS15630 afe9f510e5b4f3f2967ef44b4249891a 299 Pfam PF14261 Domain of unknown function (DUF4351) 238 295 5.5E-13 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS10835 eb55d812b359e94d508df03daee1f014 267 Pfam PF11150 Protein of unknown function (DUF2927) 72 260 2.6E-40 T 06-07-2017 IPR021323 Protein of unknown function DUF2927 APT55_RS30775 998a29db743edd4ddf1c030bcced2ed6 93 Pfam PF07845 Protein of unknown function (DUF1636) 23 81 8.3E-9 T 06-07-2017 IPR012863 Protein of unknown function DUF1636 APT55_RS18560 6b4805ee9604222711627d6944f96b51 91 SMART SM00930 11 85 5.7E-11 T 06-07-2017 IPR018449 NIL domain APT55_RS18560 6b4805ee9604222711627d6944f96b51 91 Gene3D G3DSA:3.30.70.260 10 82 8.2E-9 T 06-07-2017 APT55_RS18560 6b4805ee9604222711627d6944f96b51 91 Pfam PF09383 NIL domain 14 82 3.3E-12 T 06-07-2017 IPR018449 NIL domain APT55_RS18560 6b4805ee9604222711627d6944f96b51 91 SUPERFAMILY SSF55021 9 83 6.41E-12 T 06-07-2017 APT55_RS14320 160ad44aa37d500e692b2188ccad64fa 82 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 35 74 3.2E-4 T 06-07-2017 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 APT55_RS14320 160ad44aa37d500e692b2188ccad64fa 82 Gene3D G3DSA:1.10.10.60 33 74 1.9E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS14320 160ad44aa37d500e692b2188ccad64fa 82 SUPERFAMILY SSF46689 28 74 7.7E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS07325 cb96c9439d215942d03d5962f8235445 114 SUPERFAMILY SSF141734 5 111 3.01E-47 T 06-07-2017 APT55_RS07325 cb96c9439d215942d03d5962f8235445 114 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 2.9E-35 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS07325 cb96c9439d215942d03d5962f8235445 114 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 106 5.0E-12 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS07325 cb96c9439d215942d03d5962f8235445 114 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 31.868 T 06-07-2017 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT55_RS21130 a6b4882d6e50e405d6bd8fc0e20002e0 207 Pfam PF01548 Transposase 20 159 4.8E-15 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS02995 d77eddd42872fb45d4c467ec593579f6 378 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 70 374 1.1E-87 T 06-07-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT55_RS02995 d77eddd42872fb45d4c467ec593579f6 378 SUPERFAMILY SSF53850 72 374 6.27E-74 T 06-07-2017 APT55_RS02995 d77eddd42872fb45d4c467ec593579f6 378 Gene3D G3DSA:3.40.190.10 164 326 8.3E-57 T 06-07-2017 APT55_RS02995 d77eddd42872fb45d4c467ec593579f6 378 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 195 203 - T 06-07-2017 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 APT55_RS02995 d77eddd42872fb45d4c467ec593579f6 378 Pfam PF13531 Bacterial extracellular solute-binding protein 75 328 6.5E-42 T 06-07-2017 APT55_RS19785 bbe8e63e5dd3bfa1aadcf1d47c247712 406 PIRSF PIRSF029215 1 405 2.9E-45 T 06-07-2017 IPR016913 Uncharacterised conserved protein UCP029215 APT55_RS19785 bbe8e63e5dd3bfa1aadcf1d47c247712 406 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 14 161 3.6E-32 T 06-07-2017 IPR016913 Uncharacterised conserved protein UCP029215 APT55_RS08330 938787051fb9c8c75d7b501a6a9fd807 143 Gene3D G3DSA:3.40.50.700 16 141 1.1E-6 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS08330 938787051fb9c8c75d7b501a6a9fd807 143 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 54 139 5.9E-6 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS08330 938787051fb9c8c75d7b501a6a9fd807 143 SUPERFAMILY SSF56770 22 141 1.57E-18 T 06-07-2017 APT55_RS12120 c01a3a241f085c70a7edf5e6c6bc234d 103 Pfam PF08865 Domain of unknown function (DUF1830) 31 95 6.1E-16 T 06-07-2017 IPR014964 Protein of unknown function DUF1830 APT55_RS03775 9dbfcbcc0d9f56159fa1a05e0ae1b0af 266 Pfam PF04434 SWIM zinc finger 125 146 4.6E-4 T 06-07-2017 IPR007527 Zinc finger, SWIM-type GO:0008270 APT55_RS30175 3578936f2142f2d0c0b51a5977e72244 340 Pfam PF06250 Protein of unknown function (DUF1016) 10 321 8.2E-126 T 06-07-2017 IPR009362 Protein of unknown function DUF1016 APT55_RS02830 c38bab82ef1e41c1ab4c442227573f03 67 Gene3D G3DSA:3.50.50.60 20 49 4.2E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS26285 23ee8d6ff772044dae077021475ce43e 64 Pfam PF11623 Protein of unknown function (DUF3252) 2 53 2.0E-31 T 06-07-2017 IPR021659 Protein of unknown function DUF3252 APT55_RS22725 464b6ce947514a64d5e63674c6c831d6 194 Pfam PF02517 CAAX protease self-immunity 96 183 2.3E-15 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS17460 f93f653bdf4008fb57de92405d764fc2 281 Pfam PF14261 Domain of unknown function (DUF4351) 220 277 2.2E-16 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS08920 57dcaf5351b98d61c138f7db7549c9f1 543 Pfam PF04966 Carbohydrate-selective porin, OprB family 125 543 9.8E-73 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS08920 57dcaf5351b98d61c138f7db7549c9f1 543 Pfam PF00395 S-layer homology domain 59 101 3.1E-8 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS17605 75aa0411e40839e769daafbca9953bd8 186 Gene3D G3DSA:3.40.50.300 3 181 3.8E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17605 75aa0411e40839e769daafbca9953bd8 186 SUPERFAMILY SSF52540 14 174 7.81E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17605 75aa0411e40839e769daafbca9953bd8 186 Pfam PF13238 AAA domain 20 156 7.3E-10 T 06-07-2017 APT55_RS22500 52c39d5400b86a40776e9d49a67eab74 169 SMART SM00507 66 117 2.0E-14 T 06-07-2017 IPR003615 HNH nuclease APT55_RS22500 52c39d5400b86a40776e9d49a67eab74 169 Pfam PF14279 HNH endonuclease 79 131 2.3E-17 T 06-07-2017 IPR029471 HNH endonuclease 5 APT55_RS10055 02d6bf17473f298982de8b3258d2c2b6 435 SUPERFAMILY SSF140959 47 165 1.1E-5 T 06-07-2017 APT55_RS10055 02d6bf17473f298982de8b3258d2c2b6 435 SUPERFAMILY SSF140959 202 392 1.1E-5 T 06-07-2017 APT55_RS31640 447693201c125c82594647180b809835 194 Gene3D G3DSA:3.40.630.30 26 160 1.8E-4 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS31640 447693201c125c82594647180b809835 194 SUPERFAMILY SSF55729 28 168 2.66E-5 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS05420 2370eac1986cda2c401b1f78f0fd1085 127 Gene3D G3DSA:3.40.50.2300 4 122 4.5E-35 T 06-07-2017 APT55_RS05420 2370eac1986cda2c401b1f78f0fd1085 127 SMART SM00448 4 118 2.3E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS05420 2370eac1986cda2c401b1f78f0fd1085 127 SUPERFAMILY SSF52172 3 123 7.4E-34 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS05420 2370eac1986cda2c401b1f78f0fd1085 127 Pfam PF00072 Response regulator receiver domain 6 118 1.1E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24540 f06f42a4c417ee3e6279c1203251c616 70 Gene3D G3DSA:3.30.920.30 1 68 2.9E-24 T 06-07-2017 APT55_RS24540 f06f42a4c417ee3e6279c1203251c616 70 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 6 61 1.0E-18 T 06-07-2017 IPR012933 HicA mRNA interferase family GO:0003729 APT55_RS24540 f06f42a4c417ee3e6279c1203251c616 70 SUPERFAMILY SSF54786 2 69 2.79E-18 T 06-07-2017 APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 Gene3D G3DSA:3.40.50.720 6 266 2.8E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 266 2.8E-55 T 06-07-2017 APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.8E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.8E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.8E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 192 5.7E-4 T 06-07-2017 APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 231 251 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 4.2E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 SUPERFAMILY SSF51735 10 267 4.07E-77 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS20340 cbfa4557f0afa3bfece7fe648fbb1ea6 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT55_RS14210 44d3a9573f40854023e97be3c2179c3c 112 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 4 107 5.4E-29 T 06-07-2017 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV APT55_RS14305 d39da9e142fd3da19a2fa81914f714a7 113 ProSitePatterns PS00380 Rhodanese signature 1. 37 48 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 APT55_RS14305 d39da9e142fd3da19a2fa81914f714a7 113 Gene3D G3DSA:3.40.250.10 7 108 1.7E-30 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14305 d39da9e142fd3da19a2fa81914f714a7 113 Pfam PF00581 Rhodanese-like domain 14 101 1.7E-17 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14305 d39da9e142fd3da19a2fa81914f714a7 113 SUPERFAMILY SSF52821 8 108 2.23E-32 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS14305 d39da9e142fd3da19a2fa81914f714a7 113 SMART SM00450 12 106 1.2E-23 T 06-07-2017 IPR001763 Rhodanese-like domain APT55_RS03220 7de77dce82fa16c7da1087ac3e7b8be4 132 Pfam PF11360 Protein of unknown function (DUF3110) 3 95 5.3E-35 T 06-07-2017 IPR021503 Protein of unknown function DUF3110 APT55_RS01820 6c33103ebb5ce029a0a47e06c52e165a 367 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 3 361 1.1E-104 T 06-07-2017 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT55_RS01820 6c33103ebb5ce029a0a47e06c52e165a 367 TIGRFAM TIGR00378 cax: calcium/proton exchanger 11 361 4.5E-147 T 06-07-2017 IPR004798 Calcium/proton exchanger CAX GO:0006816|GO:0015369 APT55_RS01820 6c33103ebb5ce029a0a47e06c52e165a 367 Pfam PF01699 Sodium/calcium exchanger protein 220 356 4.3E-19 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT55_RS01820 6c33103ebb5ce029a0a47e06c52e165a 367 Pfam PF01699 Sodium/calcium exchanger protein 28 182 3.2E-16 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT55_RS20010 0f17914279f9f09264a9976ad94f37ef 267 Pfam PF08894 Protein of unknown function (DUF1838) 24 253 5.1E-101 T 06-07-2017 IPR014990 Protein of unknown function DUF1838 APT55_RS22425 5c82f920e1b0c9f915313ef59f26faa1 124 Pfam PF09685 Domain of unknown function (DUF4870) 11 124 6.0E-23 T 06-07-2017 IPR019109 Protein of unknown function DUF4870 APT55_RS11560 8bb3f7f0d1954a426eade9789ce58573 201 Pfam PF00510 Cytochrome c oxidase subunit III 25 197 1.6E-30 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11560 8bb3f7f0d1954a426eade9789ce58573 201 Gene3D G3DSA:1.20.120.80 25 198 4.8E-53 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS11560 8bb3f7f0d1954a426eade9789ce58573 201 SUPERFAMILY SSF81452 10 198 2.22E-58 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT55_RS25670 2e383103814c8805d348c01496c6a3d2 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 41 160 2.3E-17 T 06-07-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 APT55_RS25670 2e383103814c8805d348c01496c6a3d2 217 SUPERFAMILY SSF55681 1 214 7.46E-50 T 06-07-2017 APT55_RS25670 2e383103814c8805d348c01496c6a3d2 217 Gene3D G3DSA:3.90.1550.10 1 214 1.4E-39 T 06-07-2017 APT55_RS19560 4f6eb254cfae286d41681625076d67c1 94 SUPERFAMILY SSF47598 14 59 4.09E-5 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 APT55_RS19560 4f6eb254cfae286d41681625076d67c1 94 Gene3D G3DSA:1.10.1220.10 3 53 8.1E-4 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT55_RS20470 7e67b99427b481cd186dc3ddef2a17d5 143 Pfam PF00892 EamA-like transporter family 8 142 2.1E-17 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 APT55_RS20470 7e67b99427b481cd186dc3ddef2a17d5 143 SUPERFAMILY SSF103481 63 142 2.48E-12 T 06-07-2017 APT55_RS07570 f0e77b0608bf451cc34e3026bda3480d 168 SUPERFAMILY SSF103256 1 139 6.54E-47 T 06-07-2017 IPR003729 Bifunctional nuclease domain GO:0004518 APT55_RS07570 f0e77b0608bf451cc34e3026bda3480d 168 Pfam PF02577 Bifunctional nuclease 5 132 3.8E-49 T 06-07-2017 IPR003729 Bifunctional nuclease domain GO:0004518 APT55_RS30670 4c369d4cbb816cced9cb803aed01ffc3 516 Pfam PF00665 Integrase core domain 142 271 4.1E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS30670 4c369d4cbb816cced9cb803aed01ffc3 516 SUPERFAMILY SSF53098 172 308 4.93E-6 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS30670 4c369d4cbb816cced9cb803aed01ffc3 516 Gene3D G3DSA:3.30.420.10 158 307 2.4E-9 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS13940 09dbdb265f07fb00d2b91b8960f73d6e 90 Pfam PF01844 HNH endonuclease 3 46 1.6E-5 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS27395 a8d8648abb575bb2365ad420bcf05ab1 88 Pfam PF11998 Protein of unknown function (DUF3493) 13 84 2.9E-31 T 06-07-2017 IPR021883 Protein of unknown function DUF3493 APT55_RS12685 4ec6c3a177bd954f41e317ba23af0c78 218 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 92 205 2.7E-18 T 06-07-2017 IPR007182 Na+/H+ antiporter MnhB subunit-related protein APT55_RS04815 8d4a809f5cac4445de2af5d86be73187 65 Pfam PF06150 ChaB 9 52 5.1E-14 T 06-07-2017 IPR009317 ChaB APT55_RS04815 8d4a809f5cac4445de2af5d86be73187 65 SUPERFAMILY SSF140376 3 53 8.24E-15 T 06-07-2017 APT55_RS21820 988023d4616dcd69ebe02383fd18cd09 404 TIGRFAM TIGR03492 TIGR03492: conserved hypothetical protein 4 400 4.6E-144 T 06-07-2017 IPR019994 Conserved hypothetical protein CHP03492 APT55_RS21820 988023d4616dcd69ebe02383fd18cd09 404 SUPERFAMILY SSF53756 1 402 9.42E-15 T 06-07-2017 APT55_RS30095 e8372a9e5798e0182fa0819262be14c3 63 Pfam PF11211 Protein of unknown function (DUF2997) 15 48 7.2E-6 T 06-07-2017 IPR021375 Protein of unknown function DUF2997 APT55_RS24255 1abe08bc7536a12a0f244446e645b17e 314 Gene3D G3DSA:3.40.50.300 1 295 1.8E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24255 1abe08bc7536a12a0f244446e645b17e 314 SUPERFAMILY SSF52540 1 298 2.19E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS24255 1abe08bc7536a12a0f244446e645b17e 314 Pfam PF13614 AAA domain 4 206 1.4E-37 T 06-07-2017 IPR025669 AAA domain APT55_RS07505 50a4303ab33e2b0f875b9e2a466a39e3 199 Pfam PF01841 Transglutaminase-like superfamily 22 127 3.5E-16 T 06-07-2017 IPR002931 Transglutaminase-like APT55_RS07505 50a4303ab33e2b0f875b9e2a466a39e3 199 SUPERFAMILY SSF54001 16 132 2.94E-23 T 06-07-2017 APT55_RS18950 2bb4195c91f2a11b9d280cfeb395858a 213 Pfam PF02230 Phospholipase/Carboxylesterase 5 206 3.4E-31 T 06-07-2017 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 APT55_RS18950 2bb4195c91f2a11b9d280cfeb395858a 213 Gene3D G3DSA:3.40.50.1820 6 207 1.2E-41 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS18950 2bb4195c91f2a11b9d280cfeb395858a 213 SUPERFAMILY SSF53474 7 207 1.8E-37 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS26785 4bc9fca56beca7d3cd30bb13eed03c96 270 Pfam PF13529 Peptidase_C39 like family 103 225 5.0E-14 T 06-07-2017 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 Gene3D G3DSA:1.10.10.10 19 79 3.9E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 SUPERFAMILY SSF46894 16 80 4.08E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 50 62 5.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 20 34 5.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 34 50 5.8E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 SMART SM00421 17 74 1.7E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS31835 3b9a9c0b3e7f2ddbd241b5218dde9f1d 82 Pfam PF00196 Bacterial regulatory proteins, luxR family 19 74 4.5E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT55_RS14815 de95cc884b9cd8bf86d1d8f1faa30b2b 535 Pfam PF11832 Protein of unknown function (DUF3352) 10 531 1.3E-136 T 06-07-2017 IPR021787 Protein of unknown function DUF3352 APT55_RS05765 aa258757cb62918a374ea6b0d5adbce5 433 Pfam PF10216 CO2 hydration protein (ChpXY) 20 417 1.5E-169 T 06-07-2017 IPR010220 CO2 hydration APT55_RS05765 aa258757cb62918a374ea6b0d5adbce5 433 TIGRFAM TIGR01964 chpXY: CO2 hydration protein 14 429 2.9E-226 T 06-07-2017 IPR010220 CO2 hydration APT55_RS08380 286131bf036db6cb40eff92c995d6c8a 470 Pfam PF00999 Sodium/hydrogen exchanger family 44 448 6.3E-72 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS08515 5e7f25731a12df85effe2e6ece2bdfa3 115 Pfam PF08853 Domain of unknown function (DUF1823) 6 109 7.1E-44 T 06-07-2017 IPR014952 Protein of unknown function DUF1823 APT55_RS08835 d9a81078e7858bfc3a2ffbd4ec621d9e 493 SUPERFAMILY SSF56801 319 443 1.49E-7 T 06-07-2017 APT55_RS08835 d9a81078e7858bfc3a2ffbd4ec621d9e 493 SUPERFAMILY SSF56801 38 269 1.49E-7 T 06-07-2017 APT55_RS27650 a6c94caf01087d4f139d38c556989ff8 270 Pfam PF03116 NQR2, RnfD, RnfE family 133 254 2.9E-13 T 06-07-2017 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 APT55_RS23240 4d5e65cb0f3b3f4b8f589239842cc272 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 96 1.3E-29 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 APT55_RS23240 4d5e65cb0f3b3f4b8f589239842cc272 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 1 101 20.142 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 Pfam PF00290 Tryptophan synthase alpha chain 8 262 1.2E-91 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 Gene3D G3DSA:3.20.20.70 1 263 2.8E-103 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 SUPERFAMILY SSF51366 1 250 1.41E-91 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 06-07-2017 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 12 262 37.926 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS10515 21f1c6f6ef8511743ee91f90668e915b 266 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 260 5.8E-97 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT55_RS16035 8260eedb53e4cd4a071fd45672e87902 344 Gene3D G3DSA:1.20.120.520 214 333 1.9E-8 T 06-07-2017 APT55_RS16035 8260eedb53e4cd4a071fd45672e87902 344 Pfam PF01814 Hemerythrin HHE cation binding domain 201 315 1.4E-9 T 06-07-2017 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 APT55_RS05705 db850a23bf5902da07c78fa14a00f52f 453 SUPERFAMILY SSF81301 11 142 4.36E-5 T 06-07-2017 APT55_RS01835 37312eb099aa33f1b0ad9f24f74fb2ea 276 Gene3D G3DSA:3.30.2010.10 109 167 3.6E-5 T 06-07-2017 APT55_RS24895 1d116a4522f3916d10bcb6eaaaf4e8d5 597 SUPERFAMILY SSF48452 61 260 9.08E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS24895 1d116a4522f3916d10bcb6eaaaf4e8d5 597 Gene3D G3DSA:1.25.40.10 46 192 6.2E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09810 d5a0b5b59c5054524545d959aa7887e6 376 PRINTS PR01217 Proline rich extensin signature 38 50 4.7E-9 T 06-07-2017 APT55_RS09810 d5a0b5b59c5054524545d959aa7887e6 376 PRINTS PR01217 Proline rich extensin signature 96 117 4.7E-9 T 06-07-2017 APT55_RS09810 d5a0b5b59c5054524545d959aa7887e6 376 PRINTS PR01217 Proline rich extensin signature 151 168 4.7E-9 T 06-07-2017 APT55_RS09810 d5a0b5b59c5054524545d959aa7887e6 376 PRINTS PR01217 Proline rich extensin signature 193 218 4.7E-9 T 06-07-2017 APT55_RS27880 7cf58e5ca7becdef3d2972fd753491a9 444 Pfam PF04932 O-Antigen ligase 196 354 7.3E-10 T 06-07-2017 IPR007016 O-antigen ligase-related APT55_RS19910 1a5be58134ccc7f5218b89d690d918c1 117 Pfam PF01909 Nucleotidyltransferase domain 26 111 1.2E-12 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS19910 1a5be58134ccc7f5218b89d690d918c1 117 Gene3D G3DSA:3.30.460.10 16 112 2.7E-20 T 06-07-2017 APT55_RS19910 1a5be58134ccc7f5218b89d690d918c1 117 SUPERFAMILY SSF81301 12 112 1.93E-17 T 06-07-2017 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 SUPERFAMILY SSF51905 6 167 2.91E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 SUPERFAMILY SSF51905 397 408 2.91E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 SUPERFAMILY SSF51905 194 297 2.91E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 Pfam PF01593 Flavin containing amine oxidoreductase 15 405 7.6E-22 T 06-07-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 Gene3D G3DSA:3.50.50.60 7 91 6.6E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS12730 7d0666ecc41f707c8bf68687954c9def 437 Gene3D G3DSA:3.50.50.60 185 291 6.6E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS02590 a0eb93ef6a1978fe7bea939712230d09 262 Pfam PF06182 ABC-2 family transporter protein 68 261 8.6E-19 T 06-07-2017 IPR010390 Protein of unknown function DUF990 APT55_RS01650 3896346ef9229126a8a81b1b9d4481f3 347 ProDom PD079309 ALL2393 6 298 1.0E-42 T 06-07-2017 IPR020360 Uncharacterised protein family alr2393 APT55_RS20490 32e150264fa744195567156f481357ac 283 Pfam PF14256 YwiC-like protein 36 162 1.2E-25 T 06-07-2017 IPR025576 YwiC-like protein APT55_RS03195 76ff99e54111cd20879817b27c8e2a3a 167 Pfam PF07799 Protein of unknown function (DUF1643) 26 156 2.6E-42 T 06-07-2017 IPR012441 Protein of unknown function DUF1643 APT55_RS31025 d9cd1a98d7402098e4cb6e571e5d3dec 594 Pfam PF16684 Telomere resolvase 69 271 9.7E-25 T 06-07-2017 IPR032047 Telomere resolvase ResT APT55_RS24900 33756e0be6d1acd2df540dec44029063 175 Pfam PF08239 Bacterial SH3 domain 40 96 9.4E-8 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS24900 33756e0be6d1acd2df540dec44029063 175 SMART SM00287 31 99 0.004 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS24900 33756e0be6d1acd2df540dec44029063 175 SMART SM00287 103 174 7.0 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS24900 33756e0be6d1acd2df540dec44029063 175 Pfam PF13457 SH3-like domain 139 166 0.23 T 06-07-2017 IPR025987 SH3-like domain KEGG: 00511+3.2.1.96 APT55_RS08015 cb8176e4e35e48b1634e206ad4ee900a 208 Pfam PF12263 Protein of unknown function (DUF3611) 14 202 2.1E-57 T 06-07-2017 IPR022051 Protein of unknown function DUF3611 APT55_RS02145 3d978fc65fcd7c7c34e0b777ae108ff1 265 Pfam PF05685 Putative restriction endonuclease 27 153 3.0E-8 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS19210 0e16c79cb4062d8ff014f22f30a797dc 163 Pfam PF13767 Domain of unknown function (DUF4168) 44 157 3.3E-15 T 06-07-2017 IPR025433 Domain of unknown function DUF4168 APT55_RS25560 81d69c9dddaff00a2cb2d560579ea9d1 522 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 53 220 1.1E-23 T 06-07-2017 APT55_RS08025 d727d714d7765d928b7b473839aacdcf 747 Pfam PF05729 NACHT domain 173 321 6.3E-16 T 06-07-2017 APT55_RS08025 d727d714d7765d928b7b473839aacdcf 747 SUPERFAMILY SSF52540 168 329 4.87E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08025 d727d714d7765d928b7b473839aacdcf 747 Gene3D G3DSA:3.40.50.300 188 265 2.6E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08025 d727d714d7765d928b7b473839aacdcf 747 Gene3D G3DSA:3.40.50.300 168 187 8.4E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08025 d727d714d7765d928b7b473839aacdcf 747 Gene3D G3DSA:3.40.50.300 644 710 8.4E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS13665 f39acd6452ddc16339c191ac4765200d 188 Gene3D G3DSA:3.30.420.10 77 168 2.3E-4 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS13665 f39acd6452ddc16339c191ac4765200d 188 Pfam PF13358 DDE superfamily endonuclease 20 160 2.8E-34 T 06-07-2017 APT55_RS16825 360f28bdbc6c80522e808d2ee4d1ef64 256 Pfam PF12705 PD-(D/E)XK nuclease superfamily 2 234 6.7E-28 T 06-07-2017 APT55_RS19665 1c24a6b23b2ce768ad1660c77cc079d8 220 SUPERFAMILY SSF53448 3 137 5.63E-6 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 Pfam PF01634 ATP phosphoribosyltransferase 52 207 2.6E-47 T 06-07-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 187 1.2E-60 T 06-07-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 211 54.684 T 06-07-2017 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 Gene3D G3DSA:3.40.190.10 1 145 2.5E-39 T 06-07-2017 APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 SUPERFAMILY SSF53850 1 208 4.99E-61 T 06-07-2017 APT55_RS16135 2a9ffb55fb1ae2e6e4d0bc26ec94a56c 214 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 146 167 - T 06-07-2017 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 APT55_RS18490 9707173e5f67006bfec5c2d444c68f37 291 Pfam PF01061 ABC-2 type transporter 30 243 1.4E-31 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS18490 9707173e5f67006bfec5c2d444c68f37 291 PIRSF PIRSF006648 3 291 8.1E-69 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 APT55_RS08550 ef14a8161e1c8b4e09ca8c8743d3e39d 116 Pfam PF12732 YtxH-like protein 10 82 2.0E-14 T 06-07-2017 IPR024623 Uncharacterised protein family YtxH APT55_RS01845 0fa0c6b81413c36ff2b50a240913a6eb 381 SUPERFAMILY SSF53474 117 358 1.66E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01845 0fa0c6b81413c36ff2b50a240913a6eb 381 Pfam PF07859 alpha/beta hydrolase fold 157 356 6.0E-27 T 06-07-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 APT55_RS01845 0fa0c6b81413c36ff2b50a240913a6eb 381 Gene3D G3DSA:3.40.50.1820 126 364 9.0E-59 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20405 1bab6e168932df7bc9bad363360fd2fb 137 Pfam PF10990 Protein of unknown function (DUF2809) 42 125 3.1E-25 T 06-07-2017 IPR021257 Protein of unknown function DUF2809 APT55_RS29890 918442041abe3405783d511b6f1e8478 329 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 28 108 3.0E-18 T 06-07-2017 IPR022385 Rhs repeat-associated core GO:0097264 APT55_RS20765 1a9fcdf28099e40c6b91a4ba5749db67 312 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 299 1.4E-44 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS28190 deb99e7855f2e9442f5a9a7d945774d1 203 SUPERFAMILY SSF52833 56 200 3.92E-34 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28190 deb99e7855f2e9442f5a9a7d945774d1 203 Gene3D G3DSA:3.40.30.10 57 200 2.4E-47 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28190 deb99e7855f2e9442f5a9a7d945774d1 203 Pfam PF00578 AhpC/TSA family 57 179 2.9E-15 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT55_RS10090 e4f0a5b8e618af5644092a4775f310f1 314 Pfam PF03239 Iron permease FTR1 family 8 288 2.0E-47 T 06-07-2017 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 APT55_RS30305 e455a32483294afd921b2fa27bfbb776 167 Pfam PF08592 Domain of unknown function (DUF1772) 22 157 8.9E-18 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 APT55_RS16820 feda94e64848c79087b7fe52dbc46b4e 194 Pfam PF04755 PAP_fibrillin 4 191 3.1E-59 T 06-07-2017 IPR006843 Plastid lipid-associated protein/fibrillin conserved domain APT55_RS16245 b98c69b99a618513e9cd2af859caa2b5 256 SUPERFAMILY SSF56784 1 42 7.7E-12 T 06-07-2017 IPR023214 HAD-like domain APT55_RS16245 b98c69b99a618513e9cd2af859caa2b5 256 SUPERFAMILY SSF56784 120 208 7.7E-12 T 06-07-2017 IPR023214 HAD-like domain APT55_RS16245 b98c69b99a618513e9cd2af859caa2b5 256 Gene3D G3DSA:3.40.50.1000 125 227 6.2E-9 T 06-07-2017 IPR023214 HAD-like domain APT55_RS16245 b98c69b99a618513e9cd2af859caa2b5 256 Gene3D G3DSA:3.40.50.1000 7 17 6.2E-9 T 06-07-2017 IPR023214 HAD-like domain APT55_RS22065 a0e036485213ce4198bd01d81107531e 167 Pfam PF10002 Predicted membrane protein (DUF2243) 20 156 3.0E-47 T 06-07-2017 IPR018719 Protein of unknown function DUF2243, membrane APT55_RS28560 08954b29a4b04b34bd9d78dc1c18b77d 240 Pfam PF02517 CAAX protease self-immunity 143 228 3.0E-15 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS12790 0ab82d8a740473a2ba689731b5319be6 362 SUPERFAMILY SSF53448 6 131 5.34E-6 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS12790 0ab82d8a740473a2ba689731b5319be6 362 SUPERFAMILY SSF53448 162 229 5.34E-6 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS02230 79421a633cbf540b7215da012f08b06e 363 SUPERFAMILY SSF54862 76 144 1.91E-12 T 06-07-2017 APT55_RS02230 79421a633cbf540b7215da012f08b06e 363 Pfam PF12617 Iron-Sulfur binding protein C terminal 158 352 9.4E-80 T 06-07-2017 IPR021039 Iron-sulphur binding protein LdpA, C-terminal APT55_RS02230 79421a633cbf540b7215da012f08b06e 363 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 128 139 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT55_RS02230 79421a633cbf540b7215da012f08b06e 363 Gene3D G3DSA:3.30.70.20 81 144 6.3E-9 T 06-07-2017 APT55_RS05230 5fe575b879641af0052fcb993ea5f6c8 285 Pfam PF01435 Peptidase family M48 64 260 3.2E-18 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT55_RS05230 5fe575b879641af0052fcb993ea5f6c8 285 Gene3D G3DSA:3.30.2010.10 60 146 1.8E-22 T 06-07-2017 APT55_RS01765 46ae9420392fafdf510e599ee91e600c 169 Pfam PF09654 Protein of unknown function (DUF2396) 9 167 1.5E-91 T 06-07-2017 IPR013472 Conserved hypothetical protein CHP02652 APT55_RS01765 46ae9420392fafdf510e599ee91e600c 169 TIGRFAM TIGR02652 TIGR02652: TIGR02652 family protein 6 169 4.8E-94 T 06-07-2017 IPR013472 Conserved hypothetical protein CHP02652 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 107 124 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 127 150 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 151 169 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 170 191 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 72 93 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 PRINTS PR00721 Stomatin signature 25 47 1.1E-19 T 06-07-2017 IPR001972 Stomatin family GO:0016020 APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 SUPERFAMILY SSF117892 49 182 5.49E-33 T 06-07-2017 IPR001107 Band 7 domain APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 Pfam PF01145 SPFH domain / Band 7 family 22 190 6.1E-33 T 06-07-2017 IPR001107 Band 7 domain APT55_RS18995 b532c8cbe67e7edc9da5e7990d915674 269 SMART SM00244 18 175 1.0E-43 T 06-07-2017 IPR001107 Band 7 domain APT55_RS04345 58758f0ef7b414485d365ac0e57fc2b2 1229 Pfam PF02538 Hydantoinase B/oxoprolinase 717 1224 5.5E-206 T 06-07-2017 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT55_RS04345 58758f0ef7b414485d365ac0e57fc2b2 1229 Pfam PF01968 Hydantoinase/oxoprolinase 227 516 5.0E-115 T 06-07-2017 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT55_RS04345 58758f0ef7b414485d365ac0e57fc2b2 1229 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 3 207 2.0E-57 T 06-07-2017 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT55_RS11975 78bc32cc3f180290167b62fe4b590cfa 189 ProDom PD003698 YCF4 ASSEMBLY I PHOTOSYSTEM CHLOROPLAST PLASTID MEMBRANE PHOTOSYNTHESIS TRANSMEMBRANE THYLAKOID 13 189 5.0E-69 T 06-07-2017 IPR003359 Photosystem I Ycf4, assembly GO:0009522|GO:0009579|GO:0015979|GO:0016021 APT55_RS11975 78bc32cc3f180290167b62fe4b590cfa 189 Pfam PF02392 Ycf4 13 188 6.8E-86 T 06-07-2017 IPR003359 Photosystem I Ycf4, assembly GO:0009522|GO:0009579|GO:0015979|GO:0016021 APT55_RS11975 78bc32cc3f180290167b62fe4b590cfa 189 Hamap MF_00437 Photosystem I assembly protein Ycf4 [ycf4]. 1 189 41.161 T 06-07-2017 IPR003359 Photosystem I Ycf4, assembly GO:0009522|GO:0009579|GO:0015979|GO:0016021 APT55_RS06810 757d489f57c72cbb0d94ad3d956bfcd5 302 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 35 164 4.6E-63 T 06-07-2017 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 APT55_RS06810 757d489f57c72cbb0d94ad3d956bfcd5 302 Gene3D G3DSA:1.10.8.300 197 297 1.7E-30 T 06-07-2017 APT55_RS06810 757d489f57c72cbb0d94ad3d956bfcd5 302 Gene3D G3DSA:3.40.50.300 17 181 4.7E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS06810 757d489f57c72cbb0d94ad3d956bfcd5 302 PIRSF PIRSF002849 1 301 6.7E-126 T 06-07-2017 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted APT55_RS06810 757d489f57c72cbb0d94ad3d956bfcd5 302 SUPERFAMILY SSF52540 3 279 3.71E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS15510 f1b48e74a345307e6813c7e1dfef78d6 74 Pfam PF07362 Post-segregation antitoxin CcdA 12 55 2.9E-6 T 06-07-2017 IPR009956 Post-segregation antitoxin CcdA APT55_RS27195 42642d020e0d3d7193a9683c885c43e6 137 SUPERFAMILY SSF50118 1 101 6.76E-14 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS27195 42642d020e0d3d7193a9683c885c43e6 137 Gene3D G3DSA:2.30.30.110 2 100 4.6E-9 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS27195 42642d020e0d3d7193a9683c885c43e6 137 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 1 99 9.0E-12 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS03010 4fe3d32c95b4244558711617a9cc02a8 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 135 9.5E-27 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS15570 2f3ce796e9da7890ed26e64e67ffb0ca 273 Pfam PF13529 Peptidase_C39 like family 105 228 2.0E-17 T 06-07-2017 APT55_RS30505 686a7e5050f038f6b4f8c0a985b6b796 111 Gene3D G3DSA:3.30.310.110 1 109 6.1E-36 T 06-07-2017 IPR014968 XisI protein APT55_RS30505 686a7e5050f038f6b4f8c0a985b6b796 111 Pfam PF08869 XisI protein 1 109 9.3E-36 T 06-07-2017 IPR014968 XisI protein APT55_RS30505 686a7e5050f038f6b4f8c0a985b6b796 111 SUPERFAMILY SSF143847 1 109 7.85E-35 T 06-07-2017 IPR014968 XisI protein APT55_RS26355 951252a2701610dbd631b090eb084007 108 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 6 99 2.4E-22 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS26355 951252a2701610dbd631b090eb084007 108 PIRSF PIRSF033490 3 104 2.4E-21 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 APT55_RS26355 951252a2701610dbd631b090eb084007 108 Gene3D G3DSA:2.30.30.110 2 100 1.1E-30 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS26355 951252a2701610dbd631b090eb084007 108 SUPERFAMILY SSF50118 1 97 3.76E-29 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APT55_RS01960 3e05774ed4f6eed16290b0b86aaf01eb 543 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 65 217 6.9E-24 T 06-07-2017 APT55_RS25385 9bb0a5f10f453b4d426dd4a7925cdd09 293 Pfam PF14261 Domain of unknown function (DUF4351) 231 289 8.5E-23 T 06-07-2017 IPR025587 Domain of unknown function DUF4351 APT55_RS11430 9118274899918903889b1871a5c82682 602 Pfam PF04966 Carbohydrate-selective porin, OprB family 127 602 9.0E-82 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS11430 9118274899918903889b1871a5c82682 602 Pfam PF00395 S-layer homology domain 61 103 2.4E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS11825 8aadac2b013032c8d5b3ee8cc6d846ac 179 PIRSF PIRSF020893 4 179 2.7E-56 T 06-07-2017 IPR016780 Uncharacterised conserved protein UCP020893 APT55_RS21395 4c896fb3079c19aac30c80884d74b139 539 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 227 519 7.0E-72 T 06-07-2017 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 APT55_RS21395 4c896fb3079c19aac30c80884d74b139 539 Pfam PF08486 Stage II sporulation protein 224 312 5.4E-23 T 06-07-2017 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal APT55_RS02560 bd4c4306e1220e4015424e09a6748b7b 326 Pfam PF00395 S-layer homology domain 141 183 1.0E-12 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS02560 bd4c4306e1220e4015424e09a6748b7b 326 Pfam PF00395 S-layer homology domain 264 309 4.1E-6 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS02560 bd4c4306e1220e4015424e09a6748b7b 326 Pfam PF00395 S-layer homology domain 200 237 4.9E-8 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 PRINTS PR00762 Chloride channel signature 121 140 7.6E-16 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 PRINTS PR00762 Chloride channel signature 172 191 7.6E-16 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 PRINTS PR00762 Chloride channel signature 340 360 7.6E-16 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 PRINTS PR00762 Chloride channel signature 387 406 7.6E-16 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 Pfam PF00654 Voltage gated chloride channel 102 416 1.2E-54 T 06-07-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 Gene3D G3DSA:1.10.3080.10 34 417 1.1E-52 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS03160 933029ec3333526824d7283b0dae60f5 442 SUPERFAMILY SSF81340 18 435 1.19E-75 T 06-07-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 APT55_RS07885 949ab0b9e517f5e69654a11d4128ad1c 212 Pfam PF02632 BioY family 64 207 3.6E-31 T 06-07-2017 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 APT55_RS07885 949ab0b9e517f5e69654a11d4128ad1c 212 PIRSF PIRSF016661 20 212 7.7E-40 T 06-07-2017 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 APT55_RS08050 b5e9433c4435c80b76f2a770827a15c8 99 Pfam PF02325 YGGT family 13 82 6.6E-22 T 06-07-2017 IPR003425 CCB3/YggT GO:0016020 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 PRINTS PR00412 Epoxide hydrolase signature 270 292 1.0E-9 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 PRINTS PR00412 Epoxide hydrolase signature 61 76 1.0E-9 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 PRINTS PR00412 Epoxide hydrolase signature 41 59 1.0E-9 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 SUPERFAMILY SSF53474 11 293 3.01E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 Gene3D G3DSA:3.40.50.1820 14 295 4.9E-66 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 Pfam PF12697 Alpha/beta hydrolase family 37 287 6.0E-27 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 76 2.1E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS28060 686a7a0705e41894b36a89f1b4e16337 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.1E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 APT55_RS02915 45ed21257fad27c447db6eae35512009 485 PIRSF PIRSF006060 7 478 1.1E-53 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS02915 45ed21257fad27c447db6eae35512009 485 Pfam PF00324 Amino acid permease 24 405 6.2E-25 T 06-07-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 APT55_RS16475 ed9b1960beaaaa5d342e152daf8e1f18 467 Pfam PF01523 Putative modulator of DNA gyrase 26 316 3.3E-52 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT55_RS16475 ed9b1960beaaaa5d342e152daf8e1f18 467 SUPERFAMILY SSF111283 9 461 3.01E-108 T 06-07-2017 APT55_RS16475 ed9b1960beaaaa5d342e152daf8e1f18 467 PIRSF PIRSF004919 6 464 4.8E-147 T 06-07-2017 IPR025502 TldD APT55_RS05785 1be3ed199fdbe34c35f47df9e52206df 97 Pfam PF01909 Nucleotidyltransferase domain 14 95 9.3E-12 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS05785 1be3ed199fdbe34c35f47df9e52206df 97 Gene3D G3DSA:3.30.460.10 2 97 2.3E-25 T 06-07-2017 APT55_RS05785 1be3ed199fdbe34c35f47df9e52206df 97 SUPERFAMILY SSF81301 2 97 2.18E-23 T 06-07-2017 APT55_RS18405 646759b522132265c199ecdd63b74c33 95 Pfam PF06803 Protein of unknown function (DUF1232) 20 55 1.5E-14 T 06-07-2017 IPR010652 Protein of unknown function DUF1232 APT55_RS00015 73737061d601f1c90f6c522e60b5b06f 100 Pfam PF01934 Protein of unknown function DUF86 2 92 1.4E-25 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS00015 73737061d601f1c90f6c522e60b5b06f 100 Gene3D G3DSA:1.20.120.580 57 92 1.8E-5 T 06-07-2017 APT55_RS26095 f158d1dbb045d7e97221941f7a1790e5 206 Hamap MF_01460 Chromophore lyase CpcT/CpeT [cpcT]. 18 205 32.113 T 06-07-2017 IPR010404 Chromophore lyase CpcT/CpeT GO:0016829|GO:0017009 APT55_RS26095 f158d1dbb045d7e97221941f7a1790e5 206 Pfam PF06206 CpeT/CpcT family (DUF1001) 24 201 3.4E-54 T 06-07-2017 IPR010404 Chromophore lyase CpcT/CpeT GO:0016829|GO:0017009 APT55_RS21965 0e34d56248b4c2a3ae181f47f8b1cbaf 314 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 6 281 2.5E-55 T 06-07-2017 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 APT55_RS16855 aca5f3574d3fb80f27a246c79b193091 201 Pfam PF11780 Protein of unknown function (DUF3318) 8 148 1.7E-51 T 06-07-2017 IPR021751 Protein of unknown function DUF3318 APT55_RS00695 629352b87d382bcbee4b8184462da807 149 SMART SM00507 6 55 1.1E-7 T 06-07-2017 IPR003615 HNH nuclease APT55_RS00695 629352b87d382bcbee4b8184462da807 149 Pfam PF14279 HNH endonuclease 19 65 2.6E-13 T 06-07-2017 IPR029471 HNH endonuclease 5 APT55_RS21295 f0381ebf355ed24023b37f53ba751f36 124 SUPERFAMILY SSF46689 38 88 2.81E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS21295 f0381ebf355ed24023b37f53ba751f36 124 Gene3D G3DSA:1.10.10.60 45 93 4.8E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS27025 a859f2e937d41ba8bf9f1ee617fba92f 384 Pfam PF13367 Protease prsW family 86 242 2.7E-22 T 06-07-2017 IPR026898 Protease PrsW GO:0008233 APT55_RS20230 00ec762ab4ee9d907bfbb793d313c0aa 77 Pfam PF07862 Nitrogen fixation protein of unknown function 1 48 1.3E-13 T 06-07-2017 IPR012903 Uncharacterised protein family, nitrogen fixation APT55_RS20230 00ec762ab4ee9d907bfbb793d313c0aa 77 TIGRFAM TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain 1 62 6.3E-13 T 06-07-2017 IPR022516 Nif11-like leader peptide APT55_RS26270 052ea77a62af99fa99895fbd4f26be01 168 SUPERFAMILY SSF55961 25 153 6.05E-8 T 06-07-2017 APT55_RS24100 6402576a9f7e8adcd41077b7cd0f83d2 360 SUPERFAMILY SSF53335 1 343 4.75E-87 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24100 6402576a9f7e8adcd41077b7cd0f83d2 360 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 39 286 9.9E-59 T 06-07-2017 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA Reactome: R-HSA-6799198 APT55_RS17440 917e97a39014500380475b0e0948b368 261 Gene3D G3DSA:3.40.50.10070 34 126 2.7E-4 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 APT55_RS17440 917e97a39014500380475b0e0948b368 261 Pfam PF03783 Curli production assembly/transport component CsgG 30 235 4.3E-53 T 06-07-2017 IPR005534 Curli production assembly/transport component CsgG GO:0030288 APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 SUPERFAMILY SSF63829 25 315 2.62E-64 T 06-07-2017 APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 Gene3D G3DSA:2.120.10.30 48 315 6.5E-69 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 178 200 2.0E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 56 73 2.0E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 243 260 2.0E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) APT55_RS11115 a136887fdc7a8b378e3dbb577f693ddf 316 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 55 300 3.3E-54 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region APT55_RS10255 ff3adfb77665221f7483bd77a8238192 153 ProDom PD082852 PRECURSOR SIGNAL PROTEASE SIMILAR SERINE KINASE HYDROLASE ENDOPEPTIDASE GLU-SPECIFIC V8-LIKE 65 147 6.0E-15 T 06-07-2017 IPR020336 Uncharacterised protein family Y2126 APT55_RS00685 ea2f86db597e2577583873a7cc8d394f 344 SUPERFAMILY SSF53067 184 339 3.24E-7 T 06-07-2017 APT55_RS04770 86e646809ddae32af40dc6d6eb693c43 328 Gene3D G3DSA:3.40.50.2000 203 259 7.0E-4 T 06-07-2017 APT55_RS04770 86e646809ddae32af40dc6d6eb693c43 328 Pfam PF00534 Glycosyl transferases group 1 155 258 2.1E-8 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS04770 86e646809ddae32af40dc6d6eb693c43 328 SUPERFAMILY SSF53756 60 260 2.09E-13 T 06-07-2017 APT55_RS24485 a7f1ae6776304eb023e5bcabfd37c475 131 Gene3D G3DSA:3.40.50.2300 4 123 4.1E-40 T 06-07-2017 APT55_RS24485 a7f1ae6776304eb023e5bcabfd37c475 131 SMART SM00448 7 120 1.9E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24485 a7f1ae6776304eb023e5bcabfd37c475 131 Pfam PF00072 Response regulator receiver domain 9 120 3.7E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS24485 a7f1ae6776304eb023e5bcabfd37c475 131 SUPERFAMILY SSF52172 6 124 9.82E-40 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS02835 8a75724ebf24d0a3307a7a4fa7d8189d 83 Gene3D G3DSA:3.40.50.300 5 41 1.2E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02835 8a75724ebf24d0a3307a7a4fa7d8189d 83 SUPERFAMILY SSF52540 6 40 1.7E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS02835 8a75724ebf24d0a3307a7a4fa7d8189d 83 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 9 41 3.6E-10 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein APT55_RS19725 3c328129bd187149147cea81535fb728 233 Gene3D G3DSA:2.30.30.30 84 154 6.8E-5 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 APT55_RS19725 3c328129bd187149147cea81535fb728 233 SUPERFAMILY SSF50104 82 150 1.73E-5 T 06-07-2017 IPR008991 Translation protein SH3-like domain APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 Pfam PF13176 Tetratricopeptide repeat 191 213 0.027 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 Gene3D G3DSA:1.25.40.10 602 632 1.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 Gene3D G3DSA:1.25.40.10 59 80 1.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 Gene3D G3DSA:1.25.40.10 424 474 1.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 Gene3D G3DSA:1.25.40.10 177 212 1.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS11790 bf16ad0ccc4712d3930964c4d548f353 634 SUPERFAMILY SSF48452 183 282 2.04E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS22385 6fa86bc41c8d96f97e32d0e1f7bafecb 147 SMART SM00287 80 146 1.0E-6 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS22385 6fa86bc41c8d96f97e32d0e1f7bafecb 147 Pfam PF08239 Bacterial SH3 domain 90 143 2.7E-13 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type APT55_RS12345 4204fd5949986ae4cfbe23de6d6378ab 130 Pfam PF14271 Domain of unknown function (DUF4359) 21 124 1.6E-24 T 06-07-2017 IPR025578 Protein of unknown function DUF4359 APT55_RS15600 d03454feb3cefc658c636540780de04e 128 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 10 97 2.3E-5 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS29740 8f1a9cf94fa7a444110c7ba29750577a 115 Gene3D G3DSA:1.10.490.10 16 77 3.8E-4 T 06-07-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT55_RS10700 0d20b36dc7d4d3d5776321da51780928 217 TIGRFAM TIGR04153 cyanosortA_assc: cyanosortase A-associated protein 33 216 3.9E-53 T 06-07-2017 IPR026411 Cyanosortase A-associated protein APT55_RS05205 eaf0d33dad9e383f05524d4dfc0c06ae 71 Hamap MF_01354 NAD(P)H-quinone oxidoreductase subunit O [ndhO]. 1 70 26.555 T 06-07-2017 IPR020905 NAD(P)H-quinone oxidoreductase subunit O GO:0005886|GO:0016655|GO:0055114 APT55_RS05205 eaf0d33dad9e383f05524d4dfc0c06ae 71 Pfam PF11910 Cyanobacterial and plant NDH-1 subunit O 3 68 9.4E-36 T 06-07-2017 IPR020905 NAD(P)H-quinone oxidoreductase subunit O GO:0005886|GO:0016655|GO:0055114 APT55_RS18330 b25b4d11ae0d8296a0bbc7a7f14b3fce 267 Pfam PF02405 Permease MlaE 44 253 2.0E-77 T 06-07-2017 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 APT55_RS18330 b25b4d11ae0d8296a0bbc7a7f14b3fce 267 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 9 258 2.4E-97 T 06-07-2017 IPR003453 ABC transport permease subunit MlaE, Proteobacteria APT55_RS25930 2c9d0fe3b4276d646b7a5ff67208eea7 255 Pfam PF01940 Integral membrane protein DUF92 21 241 3.9E-50 T 06-07-2017 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 APT55_RS25930 2c9d0fe3b4276d646b7a5ff67208eea7 255 TIGRFAM TIGR00297 TIGR00297: TIGR00297 family protein 12 251 1.3E-68 T 06-07-2017 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 APT55_RS03825 5f366faceb074ca5540116301d6511b9 537 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 77 246 1.2E-11 T 06-07-2017 APT55_RS06935 62d978fa47c3da2bfecadbe5efe13010 198 Pfam PF13453 Transcription factor zinc-finger 2 42 1.3E-5 T 06-07-2017 IPR027392 Transcription factor zinc-finger APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 Gene3D G3DSA:3.20.20.70 35 108 9.0E-12 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 9 203 35.77 T 06-07-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 Pfam PF13394 4Fe-4S single cluster domain 30 109 7.3E-15 T 06-07-2017 APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 Pfam PF04055 Radical SAM superfamily 33 110 1.5E-11 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 SUPERFAMILY SSF102114 26 109 7.06E-12 T 06-07-2017 APT55_RS05145 59a83a25628ac4336f0f4ac753e3b29a 203 PIRSF PIRSF000370 7 203 1.6E-57 T 06-07-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APT55_RS04530 6dc1a25619da862bfc8e3cfd335c4f44 175 Hamap MF_01197 Cell division protein SepF [sepF]. 1 147 16.708 T 06-07-2017 IPR023052 Cell division protein SepF GO:0090529 APT55_RS04530 6dc1a25619da862bfc8e3cfd335c4f44 175 Pfam PF04472 Protein of unknown function (DUF552) 68 139 1.2E-26 T 06-07-2017 IPR007561 Cell division protein SepF/SepF-related GO:0090529 APT55_RS22430 5a9fa4554ca206847452f7fb58299d12 209 Gene3D G3DSA:1.10.530.10 69 200 1.0E-6 T 06-07-2017 APT55_RS22430 5a9fa4554ca206847452f7fb58299d12 209 SUPERFAMILY SSF53955 69 196 2.66E-9 T 06-07-2017 IPR023346 Lysozyme-like domain APT55_RS14135 377e12d85dd93d549e2ab9638dc60549 280 SUPERFAMILY SSF56300 30 277 1.02E-30 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS14135 377e12d85dd93d549e2ab9638dc60549 280 Pfam PF00149 Calcineurin-like phosphoesterase 31 192 5.9E-13 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS14135 377e12d85dd93d549e2ab9638dc60549 280 Gene3D G3DSA:3.60.21.10 30 201 3.5E-21 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS20630 936ef68354879574a7ecd80d98f6bd0c 145 Pfam PF13581 Histidine kinase-like ATPase domain 39 132 2.2E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20630 936ef68354879574a7ecd80d98f6bd0c 145 Gene3D G3DSA:3.30.565.10 35 125 3.5E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS20630 936ef68354879574a7ecd80d98f6bd0c 145 SUPERFAMILY SSF55874 29 127 1.78E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain APT55_RS15675 a90b88d57656cc6572b5eb606f1c0f71 142 Pfam PF14065 Protein of unknown function (DUF4255) 58 141 1.6E-7 T 06-07-2017 IPR025351 Protein of unknown function DUF4255 APT55_RS11475 d699a3f9733e3ae84b407eda347700e7 99 SUPERFAMILY SSF54913 10 97 5.56E-15 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 Gene3D G3DSA:3.90.100.10 397 471 6.8E-25 T 06-07-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 221 235 - T 06-07-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 Gene3D G3DSA:3.90.1150.10 316 396 2.3E-6 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 SUPERFAMILY SSF53383 7 377 2.66E-94 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 389 449 4.4E-10 T 06-07-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 SUPERFAMILY SSF55904 337 472 1.09E-32 T 06-07-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 Gene3D G3DSA:3.40.640.10 7 283 1.7E-106 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 APT55_RS10200 2cb4683f2b224723829cfb36490fc03f 473 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 7 316 2.3E-80 T 06-07-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 APT55_RS30570 786080455b92c102e0e6e888e9e2b290 250 Gene3D G3DSA:2.150.10.10 107 206 2.8E-6 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS30570 786080455b92c102e0e6e888e9e2b290 250 SUPERFAMILY SSF51120 97 226 2.35E-10 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal APT55_RS10215 3aeb42c4cdd1fe8f02c751d24a53797d 251 Pfam PF11209 Protein of unknown function (DUF2993) 17 245 3.0E-27 T 06-07-2017 IPR021373 Protein of unknown function DUF2993 APT55_RS28480 4a35a5270a7711e47db5e1ac50e705e9 142 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 78 139 1.4E-7 T 06-07-2017 IPR010221 VCBS repeat APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 SUPERFAMILY SSF88713 4 416 4.08E-133 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 Pfam PF03065 Glycosyl hydrolase family 57 7 364 8.7E-50 T 06-07-2017 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 Gene3D G3DSA:1.20.1430.10 417 528 7.1E-45 T 06-07-2017 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 Pfam PF09210 Domain of unknown function (DUF1957) 427 526 2.6E-40 T 06-07-2017 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 Gene3D G3DSA:3.20.110.10 3 416 1.6E-147 T 06-07-2017 IPR027291 Glycoside hydrolase 38/57, N-terminal domain APT55_RS18965 731c163559cb77daec23f5d9480f403a 529 SUPERFAMILY SSF88688 420 528 1.63E-42 T 06-07-2017 IPR028995 Glycoside hydrolase families 57/38, central domain APT55_RS21495 ac197e75e6849b78c47e10f67aa9505c 228 Pfam PF04298 Putative neutral zinc metallopeptidase 7 223 1.7E-89 T 06-07-2017 IPR007395 Putative neutral zinc metallopeptidase APT55_RS16455 a82d8c6c56ecff904dfee1a5b0c75129 197 SUPERFAMILY SSF141571 12 177 5.59E-32 T 06-07-2017 APT55_RS16455 a82d8c6c56ecff904dfee1a5b0c75129 197 Pfam PF00805 Pentapeptide repeats (8 copies) 99 135 4.5E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS16455 a82d8c6c56ecff904dfee1a5b0c75129 197 Pfam PF00805 Pentapeptide repeats (8 copies) 59 96 3.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS16455 a82d8c6c56ecff904dfee1a5b0c75129 197 Pfam PF00805 Pentapeptide repeats (8 copies) 18 54 1.6E-6 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS06395 9629dc3ba8e5e4c767938f6c691287db 124 Pfam PF04434 SWIM zinc finger 93 113 9.8E-7 T 06-07-2017 IPR007527 Zinc finger, SWIM-type GO:0008270 APT55_RS05100 71fa5f562e0a6faae024992b45cb602c 406 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 8 133 8.7E-17 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 APT55_RS05100 71fa5f562e0a6faae024992b45cb602c 406 Gene3D G3DSA:3.40.50.720 8 155 3.1E-22 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05100 71fa5f562e0a6faae024992b45cb602c 406 SUPERFAMILY SSF51735 7 154 1.35E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS05310 bd33b7145a0c3797ef7e33374ce66545 355 Gene3D G3DSA:3.20.20.70 1 350 1.5E-130 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 APT55_RS05310 bd33b7145a0c3797ef7e33374ce66545 355 SUPERFAMILY SSF51395 1 349 3.36E-118 T 06-07-2017 APT55_RS05310 bd33b7145a0c3797ef7e33374ce66545 355 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 340 1.1E-79 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APT55_RS01265 21928fcaff9a80fde33adb674763f019 159 Pfam PF13673 Acetyltransferase (GNAT) domain 27 141 5.8E-9 T 06-07-2017 IPR000182 GNAT domain GO:0008080 APT55_RS01265 21928fcaff9a80fde33adb674763f019 159 Gene3D G3DSA:3.40.630.30 2 154 4.5E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS01265 21928fcaff9a80fde33adb674763f019 159 SUPERFAMILY SSF55729 2 154 5.98E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 SUPERFAMILY SSF52540 253 520 4.35E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 Pfam PF00931 NB-ARC domain 284 540 9.6E-25 T 06-07-2017 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6803207 APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 SUPERFAMILY SSF48371 885 1177 2.19E-6 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 SUPERFAMILY SSF48371 792 829 2.19E-6 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 PRINTS PR00364 Disease resistance protein signature 362 376 1.7E-8 T 06-07-2017 APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 PRINTS PR00364 Disease resistance protein signature 288 303 1.7E-8 T 06-07-2017 APT55_RS31310 d18fbf795a519adb0d059a04f0edfbea 1356 PRINTS PR00364 Disease resistance protein signature 445 459 1.7E-8 T 06-07-2017 APT55_RS03130 c269d498c1f9c93a0427b4cedc8cfa1d 185 Pfam PF04982 HPP family 65 181 2.0E-40 T 06-07-2017 IPR007065 HPP APT55_RS20140 d6a2af15001f6a6dd8fbc9b4d536b604 186 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 21 173 1.7E-40 T 06-07-2017 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APT55_RS20140 d6a2af15001f6a6dd8fbc9b4d536b604 186 Pfam PF04093 rod shape-determining protein MreD 25 171 7.6E-9 T 06-07-2017 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APT55_RS03110 18963f18274028926cb4324645dd8315 95 Pfam PF06967 Mo-dependent nitrogenase C-terminus 13 95 1.2E-41 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS15480 544026faa432fcdc466fae7de8c61246 256 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 3 245 5.1E-21 T 06-07-2017 IPR010106 Conserved hypothetical protein CHP01784 APT55_RS22155 8daff3e6588b966282c892917a28e1e0 275 SMART SM00382 49 246 6.0E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS22155 8daff3e6588b966282c892917a28e1e0 275 Pfam PF00005 ABC transporter 41 186 2.2E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS22155 8daff3e6588b966282c892917a28e1e0 275 Gene3D G3DSA:3.40.50.300 17 232 6.3E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22155 8daff3e6588b966282c892917a28e1e0 275 SUPERFAMILY SSF52540 39 254 2.78E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22155 8daff3e6588b966282c892917a28e1e0 275 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS17855 ffb92c3b8b6374bc0d2d7b9b3dad73d5 219 Pfam PF04493 Endonuclease V 22 215 5.1E-75 T 06-07-2017 IPR007581 Endonuclease V GO:0004519|GO:0006281 APT55_RS17855 ffb92c3b8b6374bc0d2d7b9b3dad73d5 219 Hamap MF_00801 Endonuclease V [nfi]. 12 219 31.546 T 06-07-2017 IPR007581 Endonuclease V GO:0004519|GO:0006281 APT55_RS28135 1d33457be8ff00bcf547425c929c9346 169 Pfam PF04224 Protein of unknown function, DUF417 14 152 4.1E-34 T 06-07-2017 IPR007339 Protein of unknown function DUF417 APT55_RS10945 38f49be416d2662ec2fa8994361754f8 157 Pfam PF13430 Domain of unknown function (DUF4112) 11 112 7.0E-34 T 06-07-2017 IPR025187 Protein of unknown function DUF4112 APT55_RS24840 d1f24ac6ecf0495e846f4b86a2382137 85 Pfam PF01844 HNH endonuclease 19 64 1.1E-14 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS24840 d1f24ac6ecf0495e846f4b86a2382137 85 SMART SM00507 6 61 9.1E-13 T 06-07-2017 IPR003615 HNH nuclease APT55_RS22595 e95984b8fc2d0c710d8594db353108c1 294 Pfam PF02754 Cysteine-rich domain 5 86 1.5E-17 T 06-07-2017 IPR004017 Cysteine-rich domain APT55_RS22595 e95984b8fc2d0c710d8594db353108c1 294 Pfam PF02754 Cysteine-rich domain 152 240 4.1E-16 T 06-07-2017 IPR004017 Cysteine-rich domain APT55_RS02420 4e419689a2b1a5260bf366592c021c3b 346 Pfam PF00487 Fatty acid desaturase 62 314 1.3E-33 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS23245 819a0fc92e12c345866b343e4033f099 199 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 22 164 8.9E-35 T 06-07-2017 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT55_RS09760 22113cd4dc9abd58a7026eb37dc403cb 342 Gene3D G3DSA:1.10.10.10 284 336 7.6E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS19820 238e34ebbb20353d71621c452c4013ea 648 Pfam PF06381 Protein of unknown function (DUF1073) 55 408 4.5E-48 T 06-07-2017 IPR024459 Protein of unknown function DUF1073 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 Gene3D G3DSA:1.25.40.10 62 230 1.0E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 Pfam PF13431 Tetratricopeptide repeat 86 118 7.4E-7 T 06-07-2017 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 SMART SM00028 98 131 14.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 SMART SM00028 201 234 65.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 SMART SM00028 167 200 120.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 SMART SM00028 64 97 0.69 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 APT55_RS28640 6aff420118ce7a71eddd4d3aec775614 263 SUPERFAMILY SSF48452 61 230 3.03E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS01490 d82a78969b2d684eb5c9df23bc90e7f0 129 Pfam PF06967 Mo-dependent nitrogenase C-terminus 48 129 2.7E-42 T 06-07-2017 IPR009717 Mo-dependent nitrogenase, C-terminal APT55_RS05115 4e2f29f97058c597911595495e9a4cb7 408 Pfam PF14234 Domain of unknown function (DUF4336) 48 366 9.2E-142 T 06-07-2017 IPR025638 Protein of unknown function DUF4336 APT55_RS25730 6da4ce05f4d1f264f9aa5fd63deb75e2 214 Pfam PF11780 Protein of unknown function (DUF3318) 17 159 1.8E-42 T 06-07-2017 IPR021751 Protein of unknown function DUF3318 APT55_RS07550 5134e75611ce915919b7d0d440882a41 71 Pfam PF04982 HPP family 1 67 1.8E-20 T 06-07-2017 IPR007065 HPP APT55_RS26080 7eb262d3390918c9b1eeab5ff9f9076f 349 Pfam PF04230 Polysaccharide pyruvyl transferase 13 280 4.7E-35 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase APT55_RS26080 7eb262d3390918c9b1eeab5ff9f9076f 349 TIGRFAM TIGR03609 S_layer_CsaB: polysaccharide pyruvyl transferase CsaB 2 301 1.8E-113 T 06-07-2017 IPR019896 Polysaccharide pyruvyl transferase, CsaB APT55_RS07360 913bd789de6ef7243b7ad3d914318e02 288 Hamap MF_01384 Urease accessory protein UreD [ureD]. 16 269 29.416 T 06-07-2017 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 APT55_RS07360 913bd789de6ef7243b7ad3d914318e02 288 Pfam PF01774 UreD urease accessory protein 59 259 3.9E-50 T 06-07-2017 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 APT55_RS04245 08d87d56f89a5517988da1bc1e1f18e1 465 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 84 243 1.0E-5 T 06-07-2017 APT55_RS04245 08d87d56f89a5517988da1bc1e1f18e1 465 Pfam PF11283 Protein of unknown function (DUF3084) 5 79 8.3E-31 T 06-07-2017 IPR021435 Protein of unknown function DUF3084 APT55_RS10440 b1c6dc514001251911c507f26739bb29 165 Pfam PF09990 Predicted membrane protein (DUF2231) 50 152 1.2E-29 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane APT55_RS02130 3fe801ea29ee52322ec533f38e40144d 172 Pfam PF10726 Protein of function (DUF2518) 1 145 4.3E-63 T 06-07-2017 IPR019664 Uncharacterised protein family Ycf51 APT55_RS16525 73360ee55ee64a3d60f7ed178690f640 274 Pfam PF02517 CAAX protease self-immunity 134 218 4.8E-13 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS12570 7d5ba268f2b63b804b78548832adc426 85 TIGRFAM TIGR03643 TIGR03643: TIGR03643 family protein 11 80 4.2E-34 T 06-07-2017 IPR019882 Conserved hypothetical protein CHP03643 APT55_RS12570 7d5ba268f2b63b804b78548832adc426 85 Pfam PF10985 Protein of unknown function (DUF2805) 12 82 1.3E-34 T 06-07-2017 IPR019882 Conserved hypothetical protein CHP03643 APT55_RS02845 58da2e6e2e129f103006a7afe8dea2f1 259 Gene3D G3DSA:3.30.1380.10 102 190 4.3E-6 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS02845 58da2e6e2e129f103006a7afe8dea2f1 259 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 117 243 1.5E-43 T 06-07-2017 IPR003709 Peptidase M15B GO:0006508|GO:0008233 APT55_RS02845 58da2e6e2e129f103006a7afe8dea2f1 259 SUPERFAMILY SSF55166 116 249 2.88E-33 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 APT55_RS19185 72389b2469ddb1af33d9d68c0762dc50 176 Pfam PF11026 Protein of unknown function (DUF2721) 17 139 9.4E-10 T 06-07-2017 IPR021279 Protein of unknown function DUF2721 APT55_RS13070 bf8a26c54726b1bfeb90f37d7ea5b482 254 Pfam PF00487 Fatty acid desaturase 151 248 2.9E-12 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS13070 bf8a26c54726b1bfeb90f37d7ea5b482 254 Pfam PF00487 Fatty acid desaturase 53 154 1.1E-10 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS26870 767297af0b3f97730efbc8e98d06c824 265 Pfam PF14218 Circadian oscillating protein COP23 76 231 8.0E-33 T 06-07-2017 IPR025478 Circadian oscillating protein COP23 APT55_RS20145 867f9e47844353d8dbdee52f46f27e86 293 Pfam PF04085 rod shape-determining protein MreC 98 241 1.4E-37 T 06-07-2017 IPR007221 Rod shape-determining protein MreC GO:0008360 APT55_RS20145 867f9e47844353d8dbdee52f46f27e86 293 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 60 220 2.8E-34 T 06-07-2017 IPR007221 Rod shape-determining protein MreC GO:0008360 APT55_RS04405 98196326f90ebeb36039b114aae52e64 184 Gene3D G3DSA:1.10.287.40 81 153 2.3E-4 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT55_RS04110 2dbf80dfdf8fa81a7298ca2e3f04ca61 135 Pfam PF02371 Transposase IS116/IS110/IS902 family 27 74 1.2E-5 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 APT55_RS27295 85a87ec752f058c77e42ced220037c4b 952 Pfam PF03699 Uncharacterised protein family (UPF0182) 10 870 2.8E-301 T 06-07-2017 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 APT55_RS27295 85a87ec752f058c77e42ced220037c4b 952 Hamap MF_01600 UPF0182 protein . 1 945 19.317 T 06-07-2017 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 APT55_RS08225 f40e5dded9be7724044c7c7e5f179b8b 279 SUPERFAMILY SSF50630 169 268 2.59E-14 T 06-07-2017 IPR021109 Aspartic peptidase domain APT55_RS08225 f40e5dded9be7724044c7c7e5f179b8b 279 Pfam PF13975 gag-polyprotein putative aspartyl protease 176 262 1.2E-16 T 06-07-2017 APT55_RS08225 f40e5dded9be7724044c7c7e5f179b8b 279 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 188 199 - T 06-07-2017 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 APT55_RS08225 f40e5dded9be7724044c7c7e5f179b8b 279 Gene3D G3DSA:2.40.70.10 173 268 9.3E-5 T 06-07-2017 IPR021109 Aspartic peptidase domain APT55_RS30415 b0f2caf08f2c8f24961dce2ecf324ed6 604 Gene3D G3DSA:3.40.50.300 331 505 1.9E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30415 b0f2caf08f2c8f24961dce2ecf324ed6 604 Gene3D G3DSA:3.40.50.300 121 196 1.9E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS30415 b0f2caf08f2c8f24961dce2ecf324ed6 604 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 82 499 2.9E-26 T 06-07-2017 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 APT55_RS30415 b0f2caf08f2c8f24961dce2ecf324ed6 604 SUPERFAMILY SSF52540 126 506 3.98E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS04340 839baed9f28c68d5ad905a0904cac750 183 Pfam PF12158 Protein of unknown function (DUF3592) 8 158 2.1E-8 T 06-07-2017 IPR021994 Protein of unknown function DUF3592 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 SUPERFAMILY SSF117892 64 195 5.36E-22 T 06-07-2017 IPR001107 Band 7 domain APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 SMART SM00244 28 189 1.4E-21 T 06-07-2017 IPR001107 Band 7 domain APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 PRINTS PR00679 Prohibitin signature 112 130 3.6E-14 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 PRINTS PR00679 Prohibitin signature 89 108 3.6E-14 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 PRINTS PR00679 Prohibitin signature 159 178 3.6E-14 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 PRINTS PR00679 Prohibitin signature 207 223 3.6E-14 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 PRINTS PR00679 Prohibitin signature 184 207 3.6E-14 T 06-07-2017 IPR000163 Prohibitin GO:0016020 APT55_RS23805 4204af1e0ce890eadd541c5a736ab6fe 269 Pfam PF01145 SPFH domain / Band 7 family 32 209 6.4E-29 T 06-07-2017 IPR001107 Band 7 domain APT55_RS12985 7e157162f56f05c40d62afaa02dfd0a4 173 Pfam PF05154 TM2 domain 3 50 5.7E-10 T 06-07-2017 IPR007829 TM2 domain APT55_RS16385 c7663879c980a9a2792e29c6c1d3007a 376 SUPERFAMILY SSF53756 9 373 2.51E-63 T 06-07-2017 APT55_RS16385 c7663879c980a9a2792e29c6c1d3007a 376 Pfam PF13439 Glycosyltransferase Family 4 14 178 6.1E-13 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS16385 c7663879c980a9a2792e29c6c1d3007a 376 Pfam PF00534 Glycosyl transferases group 1 195 352 3.0E-33 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 APT55_RS16385 c7663879c980a9a2792e29c6c1d3007a 376 Gene3D G3DSA:3.40.50.2000 184 351 3.6E-25 T 06-07-2017 APT55_RS14690 aa510893a853a3dd3173dd3bee218609 255 Pfam PF06271 RDD family 22 155 6.3E-21 T 06-07-2017 IPR010432 RDD APT55_RS26165 7465b747e0ac949c053dfdd31b01b558 88 Pfam PF11341 Protein of unknown function (DUF3143) 25 87 6.3E-31 T 06-07-2017 IPR021489 Protein of unknown function DUF3143 APT55_RS29910 31ccc6f2be25ef5c23dc7f465aae3f6d 273 SUPERFAMILY SSF160631 25 162 2.09E-5 T 06-07-2017 APT55_RS20525 cf8926cdabc83a285199ab273885ac6e 401 SUPERFAMILY SSF53756 6 394 3.87E-43 T 06-07-2017 APT55_RS20525 cf8926cdabc83a285199ab273885ac6e 401 Pfam PF13439 Glycosyltransferase Family 4 17 207 6.9E-16 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT55_RS20525 cf8926cdabc83a285199ab273885ac6e 401 Pfam PF13692 Glycosyl transferases group 1 220 355 8.7E-22 T 06-07-2017 APT55_RS20655 dfc89a18d0717f1e65aac6b2e7ffcb4e 465 Pfam PF09852 Predicted membrane protein (DUF2079) 33 460 4.0E-111 T 06-07-2017 IPR018650 Sulfolobus virus STSV1, Orf64 APT55_RS24220 bf39f283b7b1cbc6d6d741b36b09c99b 328 Gene3D G3DSA:3.40.50.150 45 310 2.5E-61 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24220 bf39f283b7b1cbc6d6d741b36b09c99b 328 Pfam PF08241 Methyltransferase domain 96 191 6.7E-23 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 APT55_RS24220 bf39f283b7b1cbc6d6d741b36b09c99b 328 SUPERFAMILY SSF53335 30 310 5.13E-54 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 246 303 4.3E-8 T 06-07-2017 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 Pfam PF07176 Alpha/beta hydrolase of unknown function (DUF1400) 29 155 1.6E-40 T 06-07-2017 IPR010802 Domain of unknown function DUF1400 APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 SUPERFAMILY SSF53474 399 517 7.67E-32 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 SUPERFAMILY SSF53474 226 357 7.67E-32 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 Gene3D G3DSA:3.40.50.1820 195 357 1.0E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13235 2c177db81f679cc23760a7f47d2ba520 548 Gene3D G3DSA:3.40.50.1820 399 529 1.0E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS01760 06f4495aba743002fcfee7e8db4e38ba 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 1 132 2.7E-9 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT55_RS01760 06f4495aba743002fcfee7e8db4e38ba 137 Gene3D G3DSA:3.10.180.10 1 136 8.1E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS01760 06f4495aba743002fcfee7e8db4e38ba 137 SUPERFAMILY SSF54593 1 135 7.43E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT55_RS08910 b2e3abffe790822df426f0eb46926be1 272 SUPERFAMILY SSF52540 19 248 3.66E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS08910 b2e3abffe790822df426f0eb46926be1 272 Pfam PF00005 ABC transporter 36 192 1.7E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT55_RS08910 b2e3abffe790822df426f0eb46926be1 272 SMART SM00382 45 248 1.4E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain APT55_RS08910 b2e3abffe790822df426f0eb46926be1 272 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT55_RS08910 b2e3abffe790822df426f0eb46926be1 272 Gene3D G3DSA:3.40.50.300 12 253 3.1E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS21650 3336c53d3a5504466cd1be533bf03539 281 SUPERFAMILY SSF50494 16 66 1.29E-9 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS21650 3336c53d3a5504466cd1be533bf03539 281 SUPERFAMILY SSF50494 125 216 1.29E-9 T 06-07-2017 IPR009003 Peptidase S1, PA clan APT55_RS21650 3336c53d3a5504466cd1be533bf03539 281 Gene3D G3DSA:2.40.10.10 151 215 1.9E-5 T 06-07-2017 APT55_RS21650 3336c53d3a5504466cd1be533bf03539 281 Pfam PF13365 Trypsin-like peptidase domain 34 215 2.2E-6 T 06-07-2017 APT55_RS21930 d93a77b81ea33a0d6d0a3d811d882abe 198 Pfam PF14238 Domain of unknown function (DUF4340) 70 176 1.1E-11 T 06-07-2017 IPR025641 Domain of unknown function DUF4340 APT55_RS04930 d6164b5f3cffb09040b3c4c2905e3d95 225 TIGRFAM TIGR04533 cyanosortB_assc: cyanoexosortase B-associated protein 10 218 1.7E-85 T 06-07-2017 IPR030917 Cyanoexosortase B-associated protein APT55_RS02195 4a893c781219a55a9035d8aa99d76995 137 Gene3D G3DSA:3.40.30.10 16 115 2.2E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS02195 4a893c781219a55a9035d8aa99d76995 137 SUPERFAMILY SSF52833 16 119 2.46E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS29800 be77414c772003261e9d73773d4d7d3f 348 Pfam PF01609 Transposase DDE domain 144 300 2.5E-7 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 APT55_RS29800 be77414c772003261e9d73773d4d7d3f 348 SUPERFAMILY SSF53098 52 322 3.49E-27 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS29800 be77414c772003261e9d73773d4d7d3f 348 Gene3D G3DSA:3.90.350.10 94 280 6.3E-8 T 06-07-2017 IPR014736 Transposase, Tn5-like, core APT55_RS25035 45a59a02d32683f7a70e521264912716 213 Pfam PF01618 MotA/TolQ/ExbB proton channel family 73 193 3.3E-27 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS11595 6b1669416dce9576212f38f8bc584399 88 Pfam PF04319 NifZ domain 12 82 1.4E-31 T 06-07-2017 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 APT55_RS10790 0a7ceacdb9cbfbf8327bcd698d75d9a9 420 Pfam PF00999 Sodium/hydrogen exchanger family 13 397 4.0E-41 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS05130 3d7fde20adb69c9bb5f6458bfecfd8b2 310 SUPERFAMILY SSF47240 48 218 1.08E-9 T 06-07-2017 IPR009078 Ferritin-like superfamily APT55_RS16180 582b2f887c3ad150ec1ec195813b1ecd 128 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 9 81 2.5E-4 T 06-07-2017 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like APT55_RS16180 582b2f887c3ad150ec1ec195813b1ecd 128 Gene3D G3DSA:3.10.490.10 2 86 1.4E-9 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like APT55_RS03005 3aaef1c169d1d5c95b6fc27aa0ee53d9 230 Pfam PF01618 MotA/TolQ/ExbB proton channel family 69 192 2.5E-26 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS26485 c012838309d07dcfc4fecf4ff95d1d37 627 Gene3D G3DSA:3.40.50.300 245 396 1.3E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS26485 c012838309d07dcfc4fecf4ff95d1d37 627 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 247 597 1.0E-64 T 06-07-2017 IPR018647 Domain of unknown function DUF2075 APT55_RS26485 c012838309d07dcfc4fecf4ff95d1d37 627 SUPERFAMILY SSF52540 244 338 2.82E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS22105 329ae257f2c32096ccaa53b60caf1ac9 561 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 84 237 2.3E-20 T 06-07-2017 APT55_RS12400 700f4a9f1533fb60f1dfcd5409280294 315 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 310 1.7E-107 T 06-07-2017 IPR007296 Domain of unknown function DUF403 APT55_RS16355 77887cc893416631890a4a62d3a4aaa4 230 Gene3D G3DSA:1.10.1740.10 23 105 6.3E-5 T 06-07-2017 APT55_RS04990 0d8d1baaf44c9ab5a6e165ab462ebe94 238 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 55 180 2.0E-21 T 06-07-2017 IPR007621 TPM domain APT55_RS25465 b87a40df306d1617512de203558f0e6b 240 Pfam PF01925 Sulfite exporter TauE/SafE 14 235 6.3E-28 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 APT55_RS20895 e0fee22c88eda5795324458205b338c5 79 Pfam PF09493 Tryptophan-rich protein (DUF2389) 13 71 2.1E-26 T 06-07-2017 IPR012663 Conserved hypothetical protein CHP02450, tryptophan-rich APT55_RS20895 e0fee22c88eda5795324458205b338c5 79 TIGRFAM TIGR02450 TIGR02450: tryptophan-rich conserved hypothetical protein 12 71 1.3E-24 T 06-07-2017 IPR012663 Conserved hypothetical protein CHP02450, tryptophan-rich APT55_RS30245 6888909c9f0e5b44a744ee78583db089 171 Pfam PF07617 Protein of unknown function (DUF1579) 15 169 9.7E-65 T 06-07-2017 IPR011473 Protein of unknown function DUF1579 APT55_RS28115 23b0190a3c2b41f4e715ababd7414b16 244 Pfam PF10989 Protein of unknown function (DUF2808) 95 238 6.0E-40 T 06-07-2017 IPR021256 Protein of unknown function DUF2808 APT55_RS12190 8f5e4cebc9869b98f2b28dc23eabd492 56 Pfam PF00504 Chlorophyll A-B binding protein 14 47 7.6E-7 T 06-07-2017 IPR022796 Chlorophyll A-B binding protein APT55_RS12190 8f5e4cebc9869b98f2b28dc23eabd492 56 SUPERFAMILY SSF103511 11 55 2.48E-14 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS12190 8f5e4cebc9869b98f2b28dc23eabd492 56 Gene3D G3DSA:1.20.1620.10 20 53 1.6E-6 T 06-07-2017 APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 Gene3D G3DSA:3.60.21.10 324 481 6.9E-51 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 Gene3D G3DSA:3.60.21.10 211 275 6.9E-51 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 Gene3D G3DSA:3.60.21.10 44 144 6.9E-51 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 SUPERFAMILY SSF56300 49 165 1.92E-37 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 SUPERFAMILY SSF56300 215 253 1.92E-37 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 SUPERFAMILY SSF56300 320 435 1.92E-37 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS17670 fd34b734a0873f1c9f53870e19fa3e30 510 Pfam PF00149 Calcineurin-like phosphoesterase 49 405 1.1E-9 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 APT55_RS12365 e86508fff413e817049e8a5f5062bb41 297 SUPERFAMILY SSF142877 134 290 7.75E-18 T 06-07-2017 APT55_RS12365 e86508fff413e817049e8a5f5062bb41 297 Pfam PF14436 Bacterial EndoU nuclease 150 286 4.4E-19 T 06-07-2017 IPR029501 Bacterial EndoU nuclease APT55_RS16250 edb54e2a6d53cdeff5c775f0a55809ae 235 Pfam PF04367 Protein of unknown function (DUF502) 75 179 5.9E-36 T 06-07-2017 IPR007462 Protein of unknown function DUF502 APT55_RS25360 65303d7c80fc26b97b8886368451a33a 271 Pfam PF00395 S-layer homology domain 127 169 1.1E-15 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS25360 65303d7c80fc26b97b8886368451a33a 271 Pfam PF00395 S-layer homology domain 56 96 2.3E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS05710 376ce363422299e2a567c1b8f41d6d2d 226 SUPERFAMILY SSF51161 15 115 3.1E-18 T 06-07-2017 IPR011004 Trimeric LpxA-like APT55_RS05710 376ce363422299e2a567c1b8f41d6d2d 226 Gene3D G3DSA:2.160.10.10 17 116 2.4E-16 T 06-07-2017 APT55_RS14440 40e24d81c69cc27cdb3fecf94b7ce49b 448 Pfam PF03781 Sulfatase-modifying factor enzyme 1 208 441 5.7E-62 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS14440 40e24d81c69cc27cdb3fecf94b7ce49b 448 SUPERFAMILY SSF56436 206 444 4.24E-81 T 06-07-2017 IPR016187 C-type lectin fold APT55_RS14440 40e24d81c69cc27cdb3fecf94b7ce49b 448 Gene3D G3DSA:3.90.1580.10 201 445 4.8E-79 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT55_RS21710 fdf918efd9ed0b867375a7c82c260151 509 Gene3D G3DSA:2.120.10.30 141 397 1.5E-9 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS21710 fdf918efd9ed0b867375a7c82c260151 509 SUPERFAMILY SSF69322 141 196 9.02E-10 T 06-07-2017 APT55_RS21710 fdf918efd9ed0b867375a7c82c260151 509 SUPERFAMILY SSF69322 238 407 9.02E-10 T 06-07-2017 APT55_RS05630 aa8df385ef2c59172327f52c83764618 454 Pfam PF12899 Alkaline and neutral invertase 7 441 1.0E-207 T 06-07-2017 IPR024746 Glycosyl hydrolase family 100 GO:0033926 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 APT55_RS05630 aa8df385ef2c59172327f52c83764618 454 SUPERFAMILY SSF48208 38 212 2.32E-43 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS05630 aa8df385ef2c59172327f52c83764618 454 SUPERFAMILY SSF48208 255 434 2.32E-43 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 APT55_RS02010 06b61579f1a861bbca06f4ce5e544a08 536 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 99 254 1.3E-17 T 06-07-2017 APT55_RS27690 564bea1aff25487ce09f6cbba01ea553 168 Pfam PF13358 DDE superfamily endonuclease 15 138 6.1E-21 T 06-07-2017 APT55_RS11860 4c75b2a826300259bd135b752f761854 153 SMART SM01118 2 147 1.3E-18 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 APT55_RS11860 4c75b2a826300259bd135b752f761854 153 SUPERFAMILY SSF55154 1 147 9.16E-41 T 06-07-2017 IPR033469 CYTH-like domain Reactome: R-HSA-196819 APT55_RS11860 4c75b2a826300259bd135b752f761854 153 Gene3D G3DSA:2.40.320.10 1 150 2.1E-52 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 APT55_RS11860 4c75b2a826300259bd135b752f761854 153 Pfam PF01928 CYTH domain 3 141 3.3E-12 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 APT55_RS11860 4c75b2a826300259bd135b752f761854 153 PIRSF PIRSF016487 1 153 8.1E-58 T 06-07-2017 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like APT55_RS13700 a53a2b897f21878f93cd91c8fd03b645 343 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 2 153 3.8E-23 T 06-07-2017 IPR007404 LexA-binding, inner membrane-associated putative hydrolase APT55_RS18005 e9c22416a1c92d24cb5a24207becfa9f 546 Pfam PF14907 Uncharacterised nucleotidyltransferase 46 289 1.0E-59 T 06-07-2017 APT55_RS18005 e9c22416a1c92d24cb5a24207becfa9f 546 Pfam PF13471 Transglutaminase-like superfamily 426 533 4.2E-25 T 06-07-2017 IPR032708 Microcin J25-processing protein McjB, C-terminal APT55_RS30835 26997d490c286a69853ada0143bece86 101 Pfam PF13359 DDE superfamily endonuclease 9 95 5.3E-10 T 06-07-2017 IPR027806 Harbinger transposase-derived nuclease domain APT55_RS12615 e616189dd91e236de260def1d5da1022 72 Pfam PF11347 Protein of unknown function (DUF3148) 6 67 3.2E-34 T 06-07-2017 IPR021495 Protein of unknown function DUF3148 APT55_RS16565 3aa9dc4682ce47d2719c75060b8cfa6c 192 Pfam PF09366 Protein of unknown function (DUF1997) 22 173 6.1E-52 T 06-07-2017 IPR018971 Protein of unknown function DUF1997 APT55_RS08945 85ba042cd7544b937f1d903833828dc4 260 Pfam PF02535 ZIP Zinc transporter 111 255 3.2E-23 T 06-07-2017 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT55_RS02605 2586b23f2632bfad592f3410a8981678 128 Pfam PF08872 KGK domain 50 95 2.5E-6 T 06-07-2017 IPR014971 KGK APT55_RS16155 6d82679c95a33b36d60cca0797ab53f7 288 Pfam PF03239 Iron permease FTR1 family 1 255 5.4E-53 T 06-07-2017 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 APT55_RS18460 a11b6d0b2923522cc94483c68616a039 73 SUPERFAMILY SSF46689 1 69 4.66E-23 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS18460 a11b6d0b2923522cc94483c68616a039 73 Pfam PF04255 Protein of unknown function (DUF433) 7 62 2.0E-25 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS18460 a11b6d0b2923522cc94483c68616a039 73 Gene3D G3DSA:1.10.10.10 7 69 9.7E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS26560 c6b30474139234aca2998d42672b0ea7 258 Pfam PF11209 Protein of unknown function (DUF2993) 17 247 4.2E-28 T 06-07-2017 IPR021373 Protein of unknown function DUF2993 APT55_RS15035 c27bfef847ce65e8c90b107d2d673265 253 Pfam PF03574 Peptidase family S48 54 202 1.8E-81 T 06-07-2017 IPR005319 Peptidase S48, heterocyst differentiation control protein HetR GO:0003677|GO:0004252|GO:0043158 APT55_RS07035 0744aa260772b82c760a43ca53baa0a0 171 Pfam PF06496 Protein of unknown function (DUF1097) 9 155 1.2E-35 T 06-07-2017 IPR009476 Protein of unknown function DUF1097 APT55_RS05520 91a0b539b8c62653196729dcb2a6ce2b 779 SMART SM01080 400 715 4.2E-57 T 06-07-2017 IPR007890 CHASE2 APT55_RS05520 91a0b539b8c62653196729dcb2a6ce2b 779 Pfam PF05226 CHASE2 domain 390 713 6.5E-54 T 06-07-2017 IPR007890 CHASE2 APT55_RS05520 91a0b539b8c62653196729dcb2a6ce2b 779 Pfam PF12770 CHAT domain 121 337 1.1E-12 T 06-07-2017 IPR024983 CHAT domain APT55_RS21660 b8e8c54a52cfd410b7b6735f960d760f 102 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 3 14 - T 06-07-2017 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 APT55_RS10240 ac60620be676ed811d6d577ca14f0f0b 402 Pfam PF13449 Esterase-like activity of phytase 68 367 8.7E-59 T 06-07-2017 IPR027372 Phytase-like domain APT55_RS19200 db4daa22636a93c569f2ec4865f5b284 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 5 341 1.0E-61 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS08490 0f63e25fee14e4f8739ecf5f5e53e44e 152 Pfam PF11848 Domain of unknown function (DUF3368) 113 152 7.1E-12 T 06-07-2017 IPR021799 Protein of unknown function DUF3368 APT55_RS21205 a602af06c6df3388742e64051f35b128 162 Pfam PF16166 Chloroplast import apparatus Tic20-like 12 156 8.8E-24 T 06-07-2017 IPR005691 Chloroplast protein import component Tic20 APT55_RS15370 a390859377721d9a8ad9641168358daa 200 Pfam PF07466 Protein of unknown function (DUF1517) 125 200 1.1E-6 T 06-07-2017 IPR010903 Protein of unknown function DUF1517 APT55_RS02920 a1bbcea89a81d2707790ccf6a5c0ad47 251 Pfam PF03596 Cadmium resistance transporter 16 204 1.3E-36 T 06-07-2017 IPR004676 Cadmium resistance transporter APT55_RS21675 f2d8bbf912d9108ccbac697400804f84 75 SUPERFAMILY SSF89447 4 65 2.09E-5 T 06-07-2017 APT55_RS09940 6904dc8c31a841a32de0dc20b0b9ebf0 875 SUPERFAMILY SSF58104 640 856 4.05E-7 T 06-07-2017 APT55_RS13225 068b463979e47af42dfdd3dbcf3a0d00 187 Pfam PF12263 Protein of unknown function (DUF3611) 8 184 3.7E-61 T 06-07-2017 IPR022051 Protein of unknown function DUF3611 APT55_RS09645 5a1f1c41eec197e32396842ff231830c 124 SUPERFAMILY SSF81301 31 123 2.98E-14 T 06-07-2017 APT55_RS09645 5a1f1c41eec197e32396842ff231830c 124 Pfam PF01909 Nucleotidyltransferase domain 32 118 2.7E-8 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT55_RS09645 5a1f1c41eec197e32396842ff231830c 124 Gene3D G3DSA:3.30.460.10 31 119 2.8E-17 T 06-07-2017 APT55_RS28685 6928f12745170f335990cbdb5c0a9905 117 SUPERFAMILY SSF56219 17 114 6.41E-14 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS28685 6928f12745170f335990cbdb5c0a9905 117 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 17 107 3.3E-9 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase APT55_RS08315 cc485c2e82c9da0de9376df0aea993a2 88 Pfam PF04226 Transglycosylase associated protein 33 85 2.2E-7 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 APT55_RS05165 212ad2bc9704d5b051ea46d0fbabb469 88 Pfam PF06150 ChaB 15 71 6.7E-16 T 06-07-2017 IPR009317 ChaB APT55_RS05165 212ad2bc9704d5b051ea46d0fbabb469 88 SUPERFAMILY SSF140376 11 71 2.48E-12 T 06-07-2017 APT55_RS05640 c51a01d4d447527d166ea91b87bac416 94 Pfam PF04248 Domain of unknown function (DUF427) 3 88 6.0E-34 T 06-07-2017 IPR007361 Domain of unknown function DUF427 APT55_RS08955 c18173b323a8dfb6fc87f28bfb4c8ed3 307 Pfam PF04240 Protein of unknown function (DUF422) 55 270 2.1E-71 T 06-07-2017 IPR007354 Carotene biosynthesis associated membrane protein APT55_RS05750 09ce2a6b843c229513b936e6aced7452 149 SUPERFAMILY SSF82114 48 136 2.84E-5 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT55_RS09815 336b7a223ba8494ff58f54c274505ae5 860 SMART SM00100 734 851 1.5E-6 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS09815 336b7a223ba8494ff58f54c274505ae5 860 SUPERFAMILY SSF51206 728 859 1.57E-22 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like APT55_RS09815 336b7a223ba8494ff58f54c274505ae5 860 Gene3D G3DSA:2.60.120.10 729 859 2.2E-23 T 06-07-2017 IPR014710 RmlC-like jelly roll fold APT55_RS09815 336b7a223ba8494ff58f54c274505ae5 860 Pfam PF00027 Cyclic nucleotide-binding domain 753 839 1.5E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain APT55_RS20750 41b3e79a9097ec58e730083d5954cbff 323 SUPERFAMILY SSF48371 202 299 2.8E-16 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS20750 41b3e79a9097ec58e730083d5954cbff 323 Gene3D G3DSA:1.25.10.10 198 303 3.1E-16 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS20750 41b3e79a9097ec58e730083d5954cbff 323 SMART SM00567 E-Z type HEAT repeats 253 282 0.28 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS20750 41b3e79a9097ec58e730083d5954cbff 323 SMART SM00567 E-Z type HEAT repeats 214 251 110.0 T 06-07-2017 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT55_RS20750 41b3e79a9097ec58e730083d5954cbff 323 Pfam PF13646 HEAT repeats 242 311 1.5E-9 T 06-07-2017 APT55_RS04415 77124d2e207fe4b59ec5bbfff76e18ac 227 Pfam PF09335 SNARE associated Golgi protein 36 162 3.9E-18 T 06-07-2017 IPR032816 SNARE associated Golgi protein APT55_RS21255 646ade69769c2b6d84e823a488769264 316 Pfam PF01040 UbiA prenyltransferase family 61 300 2.9E-49 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 APT55_RS30825 f00e8a33255b0983cd05b03044a8124a 254 Pfam PF00665 Integrase core domain 183 238 3.8E-7 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 APT55_RS30825 f00e8a33255b0983cd05b03044a8124a 254 SUPERFAMILY SSF53098 183 237 2.09E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS30825 f00e8a33255b0983cd05b03044a8124a 254 Gene3D G3DSA:3.30.420.10 182 237 2.1E-8 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS14960 b0cb555845f3c3c1e7fa280573f0ad5c 246 Pfam PF13030 Protein of unknown function (DUF3891) 1 215 5.2E-68 T 06-07-2017 IPR024992 Protein of unknown function DUF3891 APT55_RS00075 99212c73cb07f42a4bf7899eb6cf959b 391 Pfam PF00535 Glycosyl transferase family 2 46 222 2.4E-24 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT55_RS00075 99212c73cb07f42a4bf7899eb6cf959b 391 Gene3D G3DSA:3.90.550.10 45 251 7.6E-34 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS00075 99212c73cb07f42a4bf7899eb6cf959b 391 SUPERFAMILY SSF53448 42 306 7.69E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases APT55_RS01705 f7d6811b78e9b3ca7f29d7c8dd31c448 253 Pfam PF01863 Protein of unknown function DUF45 26 237 5.5E-45 T 06-07-2017 IPR002725 Protein of unknown function DUF45 APT55_RS11960 4f4fd2f708f1b1da35ec30b4daa595ae 176 SUPERFAMILY SSF48371 102 172 4.51E-7 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 APT55_RS11960 4f4fd2f708f1b1da35ec30b4daa595ae 176 Gene3D G3DSA:1.25.10.10 105 170 6.0E-6 T 06-07-2017 IPR011989 Armadillo-like helical APT55_RS07415 c667afd6bdb965218762319cc57ddb34 165 Pfam PF13599 Pentapeptide repeats (9 copies) 46 112 1.9E-9 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS07415 c667afd6bdb965218762319cc57ddb34 165 SUPERFAMILY SSF141571 40 137 4.32E-24 T 06-07-2017 APT55_RS15730 d3d56a3c09f7a9a63fb5eac6d0252118 192 Gene3D G3DSA:3.90.1570.10 104 169 4.1E-4 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS15730 d3d56a3c09f7a9a63fb5eac6d0252118 192 Pfam PF05685 Putative restriction endonuclease 21 158 2.2E-14 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS15730 d3d56a3c09f7a9a63fb5eac6d0252118 192 SUPERFAMILY SSF52980 15 165 1.07E-6 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS10865 f8fa6f9a01d7d1ac5060a574ba58b0d1 243 Pfam PF04012 PspA/IM30 family 2 216 3.0E-63 T 06-07-2017 IPR007157 PspA/IM30 APT55_RS15850 a6ee197821b2f67a6af0883e4dab3c8e 3407 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 1554 1630 4.9E-6 T 06-07-2017 IPR013491 Caudovirus, tape measure, N-terminal APT55_RS24955 e7c009a06f64f2080a700971e80e29d3 357 Pfam PF08852 Protein of unknown function (DUF1822) 13 334 7.4E-20 T 06-07-2017 IPR014951 Protein of unknown function DUF1822 APT55_RS28185 ba686f5cf57fa0fa01af0c364309842c 230 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 12 210 4.2E-22 T 06-07-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APT55_RS31575 521c362df89754945460c222a510fb9c 83 Gene3D G3DSA:2.40.50.140 22 74 2.5E-6 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold APT55_RS04805 77a86e5b1be8f7d0f92a1cb141d23696 201 Gene3D G3DSA:3.40.1410.10 39 200 1.1E-53 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain APT55_RS04805 77a86e5b1be8f7d0f92a1cb141d23696 201 Pfam PF01947 Protein of unknown function (DUF98) 48 197 1.5E-59 T 06-07-2017 IPR002800 Protein of unknown function DUF98 APT55_RS04805 77a86e5b1be8f7d0f92a1cb141d23696 201 SUPERFAMILY SSF64288 40 192 3.77E-42 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain APT55_RS04890 592f6addb2e87cb9a1fcb8125e3935da 242 SMART SM00448 2 115 4.1E-36 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04890 592f6addb2e87cb9a1fcb8125e3935da 242 Pfam PF00072 Response regulator receiver domain 4 115 7.6E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT55_RS04890 592f6addb2e87cb9a1fcb8125e3935da 242 Gene3D G3DSA:3.40.50.2300 2 124 1.7E-35 T 06-07-2017 APT55_RS04890 592f6addb2e87cb9a1fcb8125e3935da 242 SUPERFAMILY SSF52172 1 135 8.68E-37 T 06-07-2017 IPR011006 CheY-like superfamily APT55_RS19540 8345138661fe45290f6a54101b50ad10 69 Pfam PF01402 Ribbon-helix-helix protein, copG family 7 40 3.1E-5 T 06-07-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 APT55_RS02350 d3f81388bcea3733c1cdac699d801d59 358 Pfam PF08852 Protein of unknown function (DUF1822) 18 356 2.4E-85 T 06-07-2017 IPR014951 Protein of unknown function DUF1822 APT55_RS03210 0c14070d6fb7b093a31bbb8b44b30098 193 Pfam PF10989 Protein of unknown function (DUF2808) 42 178 1.1E-34 T 06-07-2017 IPR021256 Protein of unknown function DUF2808 APT55_RS05280 025cac93e92ccc7ce8259059364d93ab 237 SUPERFAMILY SSF141571 6 173 2.42E-38 T 06-07-2017 APT55_RS05280 025cac93e92ccc7ce8259059364d93ab 237 Pfam PF00805 Pentapeptide repeats (8 copies) 136 174 4.4E-8 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05280 025cac93e92ccc7ce8259059364d93ab 237 Pfam PF00805 Pentapeptide repeats (8 copies) 188 227 4.0E-14 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05280 025cac93e92ccc7ce8259059364d93ab 237 Pfam PF00805 Pentapeptide repeats (8 copies) 16 53 1.6E-7 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS05280 025cac93e92ccc7ce8259059364d93ab 237 Pfam PF00805 Pentapeptide repeats (8 copies) 55 92 6.8E-12 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS21875 cc745fb1e82a070922ff70fa2726f77e 225 Pfam PF07298 NnrU protein 3 219 8.4E-55 T 06-07-2017 IPR009915 NnrU domain APT55_RS09225 9d46cd6961450e15b0bb195422cbfae4 198 Gene3D G3DSA:1.10.287.450 133 177 8.4E-4 T 06-07-2017 APT55_RS27350 2768026f44b6be593e80ca1d4ca77a64 182 SUPERFAMILY SSF52980 2 176 3.91E-18 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS27350 2768026f44b6be593e80ca1d4ca77a64 182 Pfam PF05685 Putative restriction endonuclease 11 176 4.1E-30 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS27350 2768026f44b6be593e80ca1d4ca77a64 182 Gene3D G3DSA:3.90.1570.10 5 179 3.2E-19 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS00440 e0fd8c77ab19f22a82169cedb10fa0fb 52 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 3 47 2.7E-21 T 06-07-2017 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 APT55_RS30795 da0469f311483d2aa1644962fc7a4c11 267 Pfam PF03649 Uncharacterised protein family (UPF0014) 11 250 1.5E-88 T 06-07-2017 IPR005226 UPF0014 family APT55_RS30795 da0469f311483d2aa1644962fc7a4c11 267 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 11 256 3.6E-65 T 06-07-2017 IPR005226 UPF0014 family APT55_RS13190 75063ec09b1f12db9fe1d776a93534f9 402 Gene3D G3DSA:3.40.50.620 212 327 2.7E-10 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT55_RS13190 75063ec09b1f12db9fe1d776a93534f9 402 Pfam PF02698 DUF218 domain 212 385 3.9E-14 T 06-07-2017 IPR003848 Domain of unknown function DUF218 APT55_RS28090 ac239f616ed66089ee116cdaf5060d57 241 Pfam PF10989 Protein of unknown function (DUF2808) 93 235 1.9E-39 T 06-07-2017 IPR021256 Protein of unknown function DUF2808 APT55_RS31405 46186fae0fb6812f24d3123febf55ef1 337 Pfam PF09700 CRISPR-associated protein (Cas_Cmr3) 33 301 3.7E-14 T 06-07-2017 IPR019117 CRISPR-associated protein, Cmr3 APT55_RS25265 d559dd1e83a2633c0ed0c51b43a2a0ce 873 Gene3D G3DSA:1.25.40.10 535 553 1.8E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25265 d559dd1e83a2633c0ed0c51b43a2a0ce 873 Gene3D G3DSA:1.25.40.10 766 871 1.8E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25265 d559dd1e83a2633c0ed0c51b43a2a0ce 873 SUPERFAMILY SSF48452 763 871 6.88E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS25265 d559dd1e83a2633c0ed0c51b43a2a0ce 873 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 66 157 4.1E-6 T 06-07-2017 APT55_RS06820 b9b20f303fd4ca53900e35c7c95af402 456 Pfam PF05140 ResB-like family 356 434 5.2E-14 T 06-07-2017 IPR007816 ResB-like domain APT55_RS06820 b9b20f303fd4ca53900e35c7c95af402 456 Pfam PF05140 ResB-like family 25 299 8.1E-66 T 06-07-2017 IPR007816 ResB-like domain APT55_RS06820 b9b20f303fd4ca53900e35c7c95af402 456 Hamap MF_01392 Cytochrome c biogenesis protein Ccs1 [ccs1]. 15 439 43.723 T 06-07-2017 IPR023494 Cytochrome c biogenesis protein Ccs1/CcsB APT55_RS29220 3d49f4d71fbd863c70198e01d93e58ce 30 Pfam PF05115 Cytochrome B6-F complex subunit VI (PetL) 2 30 7.4E-10 T 06-07-2017 IPR007802 Cytochrome b6-f complex subunit 6 GO:0009055|GO:0009512 APT55_RS25960 ef474688bc96f8bf4c1ea5096d6c68c0 115 Pfam PF09685 Domain of unknown function (DUF4870) 8 115 1.5E-24 T 06-07-2017 IPR019109 Protein of unknown function DUF4870 APT55_RS31855 cc8241110a2f28819595c03bb5ec6983 182 Pfam PF13437 HlyD family secretion protein 77 147 7.2E-8 T 06-07-2017 APT55_RS18785 d2be9b4f59fcb8485ee3d3c37336b168 46 Gene3D G3DSA:1.10.3460.10 6 43 1.3E-6 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS18785 d2be9b4f59fcb8485ee3d3c37336b168 46 SUPERFAMILY SSF103511 4 45 9.29E-13 T 06-07-2017 IPR023329 Chlorophyll a/b binding protein domain APT55_RS26465 ef240f6b21ba540299eb56e998a07b47 450 PIRSF PIRSF006060 8 447 7.1E-70 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS26465 ef240f6b21ba540299eb56e998a07b47 450 Pfam PF13520 Amino acid permease 25 430 5.6E-48 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 APT55_RS30090 f03d4c89a8c2bd2d6320e8701dc9c325 173 Pfam PF06868 Protein of unknown function (DUF1257) 37 107 2.9E-6 T 06-07-2017 IPR009666 Uncharacterised protein family Ycf35 APT55_RS16990 10b17874b1f09150715985a11cde4d5a 166 SMART SM00260 12 158 7.8E-5 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16990 10b17874b1f09150715985a11cde4d5a 166 SUPERFAMILY SSF50341 10 139 4.71E-12 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS16990 10b17874b1f09150715985a11cde4d5a 166 Pfam PF01584 CheW-like domain 17 144 9.6E-11 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 APT55_RS19085 bd19246bf98d1b4455df0dc8348a7df3 270 Pfam PF08478 POTRA domain, FtsQ-type 57 125 9.7E-15 T 06-07-2017 IPR013685 Polypeptide-transport-associated, FtsQ-type APT55_RS26540 41183e38e345746f580c4788a11c30e2 217 Pfam PF01618 MotA/TolQ/ExbB proton channel family 73 191 5.8E-28 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS26035 3a7dd70dd391dac0702a9a3731f712cb 95 Pfam PF05360 yiaA/B two helix domain 15 67 1.4E-22 T 06-07-2017 IPR008024 YiaAB two helix APT55_RS31660 6fc33f1792837105574715b5fd30e616 602 Pfam PF16684 Telomere resolvase 110 267 7.3E-22 T 06-07-2017 IPR032047 Telomere resolvase ResT APT55_RS03125 3763f7bbc491cce59b816bf4a406e318 170 Pfam PF09990 Predicted membrane protein (DUF2231) 39 152 6.2E-29 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane APT55_RS23770 9dc2348d53c193cc819a833d335d9ea6 242 Pfam PF04402 Protein of unknown function (DUF541) 38 238 5.5E-36 T 06-07-2017 IPR007497 Protein of unknown function DUF541 APT55_RS14765 ef278d4295351e66865eae205993ed2b 155 SUPERFAMILY SSF56235 17 155 1.52E-36 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal APT55_RS14765 ef278d4295351e66865eae205993ed2b 155 Pfam PF01019 Gamma-glutamyltranspeptidase 14 150 7.1E-33 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 APT55_RS13760 2fa338646536f14672b57d6bbd4c1d1e 454 Pfam PF00805 Pentapeptide repeats (8 copies) 115 151 7.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS13760 2fa338646536f14672b57d6bbd4c1d1e 454 Pfam PF00805 Pentapeptide repeats (8 copies) 73 110 5.6E-10 T 06-07-2017 IPR001646 Pentapeptide repeat APT55_RS13760 2fa338646536f14672b57d6bbd4c1d1e 454 SUPERFAMILY SSF141571 43 183 6.47E-35 T 06-07-2017 APT55_RS23425 dc6fc06e218a474e6865c6dd8830f492 219 Gene3D G3DSA:1.20.1260.10 49 216 2.4E-46 T 06-07-2017 IPR012347 Ferritin-related APT55_RS23425 dc6fc06e218a474e6865c6dd8830f492 219 Pfam PF03713 Domain of unknown function (DUF305) 55 213 1.4E-45 T 06-07-2017 IPR005183 Domain of unknown function DUF305 APT55_RS07455 3333fe5655efe7727fb516280aa73b25 244 SUPERFAMILY SSF102215 1 242 4.05E-72 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS07455 3333fe5655efe7727fb516280aa73b25 244 Gene3D G3DSA:3.40.50.10310 1 240 7.6E-74 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS07455 3333fe5655efe7727fb516280aa73b25 244 Pfam PF02633 Creatinine amidohydrolase 6 236 1.1E-60 T 06-07-2017 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 APT55_RS21540 14a25fb0fa6fd4068f497fd9cda00b8a 520 Gene3D G3DSA:3.50.50.60 58 218 7.4E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21540 14a25fb0fa6fd4068f497fd9cda00b8a 520 Gene3D G3DSA:3.50.50.60 311 378 7.4E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21540 14a25fb0fa6fd4068f497fd9cda00b8a 520 SUPERFAMILY SSF51905 58 219 4.67E-15 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS21540 14a25fb0fa6fd4068f497fd9cda00b8a 520 SUPERFAMILY SSF51905 320 390 4.67E-15 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT55_RS25815 86dd10e607b95cffa8c54aa9f2b03964 356 Pfam PF00487 Fatty acid desaturase 69 320 9.3E-36 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS18425 17d082d9e25271f863cce22015ac0a20 150 Pfam PF01844 HNH endonuclease 67 112 2.3E-5 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 APT55_RS28270 6e3ad22cf18bfd10eba4b614c3f02970 182 Gene3D G3DSA:3.40.30.10 14 178 3.9E-39 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28270 6e3ad22cf18bfd10eba4b614c3f02970 182 SUPERFAMILY SSF52833 10 174 3.11E-34 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS28270 6e3ad22cf18bfd10eba4b614c3f02970 182 Pfam PF13462 Thioredoxin 17 175 5.9E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 Gene3D G3DSA:2.130.10.10 70 328 3.0E-41 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 Gene3D G3DSA:2.130.10.10 344 395 1.9E-4 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 SUPERFAMILY SSF50978 77 390 2.75E-43 T 06-07-2017 IPR017986 WD40-repeat-containing domain GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 Pfam PF00400 WD domain, G-beta repeat 160 213 2.1E-6 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 Pfam PF00400 WD domain, G-beta repeat 118 155 6.2E-8 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 SMART SM00320 117 156 1.9E-11 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 SMART SM00320 67 114 4.4 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 SMART SM00320 159 213 0.0044 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS00790 879e7375023918c426ae7329ed28ab1c 398 SMART SM00320 354 395 48.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 APT55_RS21985 21ef25192bfdcb65cc69c5967181ae96 381 Pfam PF01594 Domain of unknown function DUF20 6 328 7.7E-64 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS13230 9a8844eea03e746d96650efc4de8b313 86 Pfam PF11165 Protein of unknown function (DUF2949) 32 84 1.8E-25 T 06-07-2017 IPR021336 Protein of unknown function DUF2949 APT55_RS14780 dc6b809f4fb7e3f08d4c27ec9c90df48 263 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 68 245 1.5E-62 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS14780 dc6b809f4fb7e3f08d4c27ec9c90df48 263 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 72 240 5.1E-59 T 06-07-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 APT55_RS29315 83a3cc15c1e295a11afafc0eb36623c2 341 Pfam PF07498 Rho termination factor, N-terminal domain 3 30 3.0E-5 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 APT55_RS27940 85fae91cf09bd66d1d4ed6ed42c3d8e8 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 220 8.6E-32 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 APT55_RS27940 85fae91cf09bd66d1d4ed6ed42c3d8e8 313 SUPERFAMILY SSF51735 1 311 5.38E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS27940 85fae91cf09bd66d1d4ed6ed42c3d8e8 313 Gene3D G3DSA:3.40.50.720 1 306 2.5E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain APT55_RS14140 1674f21992dd8b73a75588a7ab9a9d41 282 Pfam PF06724 Domain of Unknown Function (DUF1206) 114 182 2.5E-15 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 APT55_RS14140 1674f21992dd8b73a75588a7ab9a9d41 282 Pfam PF06724 Domain of Unknown Function (DUF1206) 208 277 6.3E-20 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 APT55_RS14140 1674f21992dd8b73a75588a7ab9a9d41 282 Pfam PF06724 Domain of Unknown Function (DUF1206) 29 96 6.7E-22 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 APT55_RS25620 980fc55aa346f8dd50e586fa40413247 377 SUPERFAMILY SSF103473 3 373 7.85E-43 T 06-07-2017 IPR020846 Major facilitator superfamily domain APT55_RS25620 980fc55aa346f8dd50e586fa40413247 377 Gene3D G3DSA:1.20.1250.20 203 371 9.1E-13 T 06-07-2017 APT55_RS25620 980fc55aa346f8dd50e586fa40413247 377 Gene3D G3DSA:1.20.1250.20 15 173 1.6E-16 T 06-07-2017 APT55_RS25620 980fc55aa346f8dd50e586fa40413247 377 Pfam PF07690 Major Facilitator Superfamily 9 337 1.3E-26 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT55_RS16265 151e6912cf13fe123c15f18b738d7731 260 SUPERFAMILY SSF63829 28 258 4.9E-12 T 06-07-2017 APT55_RS16265 151e6912cf13fe123c15f18b738d7731 260 Gene3D G3DSA:2.120.10.30 14 254 5.1E-11 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like APT55_RS07390 55f2750f5e46b9e90c2b2c796f656306 228 Pfam PF06051 Domain of Unknown Function (DUF928) 45 223 8.8E-48 T 06-07-2017 IPR010328 Protein of unknown function DUF928 APT55_RS26915 881b33f7fd26fc120354bdd8d5d09f4f 364 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 336 4.1E-34 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS05625 792f368803deeae4592beb2e615639f3 72 SUPERFAMILY SSF143100 6 59 7.06E-15 T 06-07-2017 APT55_RS17520 0f06c9bfbe9dd702e0a688d23ea5909b 235 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 11 216 9.6E-71 T 06-07-2017 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 APT55_RS18270 b4124c665a7783a757f07aa34dbc9d62 318 Pfam PF13478 XdhC Rossmann domain 153 293 8.8E-34 T 06-07-2017 IPR027051 XdhC Rossmann domain APT55_RS18270 b4124c665a7783a757f07aa34dbc9d62 318 Pfam PF02625 XdhC and CoxI family 13 74 9.8E-23 T 06-07-2017 IPR003777 XdhC- CoxI APT55_RS18270 b4124c665a7783a757f07aa34dbc9d62 318 Gene3D G3DSA:3.40.50.20 147 233 6.2E-5 T 06-07-2017 IPR016185 Pre-ATP-grasp domain APT55_RS24560 1806ebf4ceff8677adce07772f6eb369 112 Pfam PF10664 Cyanobacterial and plastid NDH-1 subunit M 3 109 3.9E-55 T 06-07-2017 IPR018922 NAD(P)H-quinone oxidoreductase subunit M GO:0016655|GO:0055114 APT55_RS24560 1806ebf4ceff8677adce07772f6eb369 112 Hamap MF_01352 NAD(P)H-quinone oxidoreductase subunit M [ndhM]. 1 111 34.981 T 06-07-2017 IPR018922 NAD(P)H-quinone oxidoreductase subunit M GO:0016655|GO:0055114 APT55_RS02260 bba1152e98665a3dc19c6112c9faab4f 308 Pfam PF09992 Phosphodiester glycosidase 112 304 3.3E-33 T 06-07-2017 IPR018711 Phosphodiester glycosidase APT55_RS29130 82bc438cdd45cf11b651024ae9c160bf 95 Pfam PF09876 Predicted metal-binding protein (DUF2103) 5 95 1.5E-25 T 06-07-2017 IPR018664 Protein of unknown function DUF2103, metal-binding APT55_RS22545 85ef2d546db21f8fbfa90d01b9bd81f2 245 Pfam PF11318 Protein of unknown function (DUF3120) 46 242 2.2E-86 T 06-07-2017 IPR021468 Protein of unknown function DUF3120 APT55_RS12220 9dfccf8aa6783e6bb2679c4c209a1edb 95 Pfam PF11189 Protein of unknown function (DUF2973) 1 66 8.6E-29 T 06-07-2017 IPR021355 Bacteriophage Syn9, Gp224 APT55_RS09405 437adad95b2b9ef7ebf1099fb7f4da68 140 SUPERFAMILY SSF48452 5 89 1.01E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS09405 437adad95b2b9ef7ebf1099fb7f4da68 140 Gene3D G3DSA:1.25.40.10 4 89 7.9E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS18485 ae9ac4096fb01d354e7ef9657a74361c 215 Pfam PF05685 Putative restriction endonuclease 25 170 5.9E-15 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS18485 ae9ac4096fb01d354e7ef9657a74361c 215 SUPERFAMILY SSF52980 21 163 2.09E-6 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS16445 01182561d16baec939d4569c1c04e742 89 Gene3D G3DSA:1.10.1220.10 9 63 3.3E-7 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT55_RS16445 01182561d16baec939d4569c1c04e742 89 SUPERFAMILY SSF47598 2 63 4.23E-9 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 APT55_RS13280 d166d990d6deb6b3cf7971527a79f0ea 525 Gene3D G3DSA:3.40.50.1820 366 485 3.0E-42 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13280 d166d990d6deb6b3cf7971527a79f0ea 525 Gene3D G3DSA:3.40.50.1820 177 325 3.0E-42 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13280 d166d990d6deb6b3cf7971527a79f0ea 525 Pfam PF07176 Alpha/beta hydrolase of unknown function (DUF1400) 16 138 1.3E-27 T 06-07-2017 IPR010802 Domain of unknown function DUF1400 APT55_RS13280 d166d990d6deb6b3cf7971527a79f0ea 525 SUPERFAMILY SSF53474 176 325 4.75E-28 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS13280 d166d990d6deb6b3cf7971527a79f0ea 525 SUPERFAMILY SSF53474 366 439 4.75E-28 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS27240 c27b22c8aeb5c81bd19ef1e5cfd3107b 136 SUPERFAMILY SSF52980 3 136 9.83E-53 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS27240 c27b22c8aeb5c81bd19ef1e5cfd3107b 136 Pfam PF08814 XisH protein 2 131 3.5E-55 T 06-07-2017 IPR014919 XisH protein APT55_RS27240 c27b22c8aeb5c81bd19ef1e5cfd3107b 136 Gene3D G3DSA:3.40.1350.10 1 135 2.0E-57 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 APT55_RS05155 8c37e3ff41106ab8abd148885d3eab89 126 Pfam PF14105 Domain of unknown function (DUF4278) 1 67 4.7E-15 T 06-07-2017 IPR025458 Protein of unknown function DUF4278 APT55_RS02945 99c4acbe160000f03eda0c649e625a9e 141 Pfam PF07843 Protein of unknown function (DUF1634) 29 137 6.0E-32 T 06-07-2017 IPR012861 Protein of unknown function DUF1634 APT55_RS08530 85c4ca1fc311569b3e298ec3dfdeb771 736 SUPERFAMILY SSF52151 361 433 6.8E-8 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS08530 85c4ca1fc311569b3e298ec3dfdeb771 736 SUPERFAMILY SSF52151 495 590 6.8E-8 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 APT55_RS25605 ae4b393518c45bf0b41d67bd78a25df8 114 Gene3D G3DSA:1.10.3470.10 9 110 2.2E-5 T 06-07-2017 IPR029022 ABC transporter, BtuC-like APT55_RS06795 b1f2a167f2a4d987f61568466ddbd58d 588 Pfam PF05960 Bacterial protein of unknown function (DUF885) 89 571 6.1E-76 T 06-07-2017 IPR010281 Protein of unknown function DUF885 APT55_RS17985 0ae45e9c53f7fcb5bc10f83edec66077 293 Gene3D G3DSA:3.40.50.300 105 242 3.2E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT55_RS17985 0ae45e9c53f7fcb5bc10f83edec66077 293 SUPERFAMILY SSF53795 107 229 2.52E-10 T 06-07-2017 APT55_RS12410 d2d4eda35986be418e51b6f0e7dd877f 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 130 1.5E-25 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 APT55_RS23100 72f773925750d246a65fd43e4cfc5c7e 599 Pfam PF11832 Protein of unknown function (DUF3352) 42 588 1.3E-57 T 06-07-2017 IPR021787 Protein of unknown function DUF3352 APT55_RS14055 ae2151ff9064242fe77334264144a3fd 461 Pfam PF01757 Acyltransferase family 11 366 3.6E-26 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 APT55_RS23215 9e61af31ebdabbd586ca06a48905826e 359 Pfam PF01594 Domain of unknown function DUF20 16 341 1.2E-63 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS07005 ea5aad4c5169309f909d6de14c186375 341 Pfam PF00487 Fatty acid desaturase 38 294 1.3E-26 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 APT55_RS05525 e6d8a7f8292c11f8c4e4fd271714754a 377 Pfam PF08852 Protein of unknown function (DUF1822) 13 376 4.5E-83 T 06-07-2017 IPR014951 Protein of unknown function DUF1822 APT55_RS26020 eadaf5583bb5deffed0ab2c20ababdd8 365 SUPERFAMILY SSF48452 12 66 7.05E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS26020 eadaf5583bb5deffed0ab2c20ababdd8 365 Gene3D G3DSA:1.25.40.10 8 65 3.3E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 APT55_RS20045 005d3718f27c1a01cf064909c78e3226 251 Pfam PF01764 Lipase (class 3) 57 207 1.1E-29 T 06-07-2017 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 APT55_RS20045 005d3718f27c1a01cf064909c78e3226 251 Gene3D G3DSA:3.40.50.1820 4 230 6.4E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS20045 005d3718f27c1a01cf064909c78e3226 251 SUPERFAMILY SSF53474 8 226 3.15E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold APT55_RS16395 eae632dce4f8feac316ab41b657d222d 170 Pfam PF02643 Uncharacterized ACR, COG1430 58 163 2.4E-31 T 06-07-2017 IPR003795 Protein of unknown function DUF192 APT55_RS20305 3a8d00104e5247b0514a27c7d2710941 134 Gene3D G3DSA:2.120.10.80 4 132 9.2E-6 T 06-07-2017 IPR015915 Kelch-type beta propeller GO:0005515 APT55_RS20305 3a8d00104e5247b0514a27c7d2710941 134 SUPERFAMILY SSF50965 6 132 1.7E-8 T 06-07-2017 IPR011043 Galactose oxidase/kelch, beta-propeller APT55_RS22475 bc03594bc5a119a9daf61dec6af47016 405 Pfam PF00656 Caspase domain 62 204 5.1E-6 T 06-07-2017 APT55_RS12085 94673cdc096fba30a7d2289b973ad53a 79 Gene3D G3DSA:1.20.1260.10 31 75 2.0E-4 T 06-07-2017 IPR012347 Ferritin-related APT55_RS03705 98a6adacfec98e98e26cc0fcadb11300 93 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 67 1.6E-14 T 06-07-2017 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 APT55_RS01165 232243b3777cee89401c3231860fd09f 95 Pfam PF11691 Protein of unknown function (DUF3288) 7 94 6.8E-38 T 06-07-2017 IPR021705 Protein of unknown function DUF3288 APT55_RS29845 902ae928a9cadf8b407a3a69b33d0e68 427 Pfam PF10117 McrBC 5-methylcytosine restriction system component 74 379 4.0E-38 T 06-07-2017 IPR019292 5-methylcytosine restriction system component APT55_RS23605 71b981e94da4365a65fefddba107eaf0 84 Pfam PF11165 Protein of unknown function (DUF2949) 6 59 5.0E-22 T 06-07-2017 IPR021336 Protein of unknown function DUF2949 APT55_RS31635 e5888e062db9375ad7fe37fe3fcc31c8 140 SUPERFAMILY SSF46689 18 113 1.08E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS18135 bb59e3cba3d856ce560c765d79126cc3 191 Pfam PF11016 Protein of unknown function (DUF2854) 25 169 9.2E-61 T 06-07-2017 IPR021275 Protein of unknown function DUF2854 APT55_RS09910 aa1263870be74d5b64b59bdbc7d5d592 168 Gene3D G3DSA:2.60.120.260 43 130 8.6E-4 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS09640 80009abd7deb2f6a81bd02d933c9280c 119 Gene3D G3DSA:1.20.120.580 71 112 6.9E-8 T 06-07-2017 APT55_RS09640 80009abd7deb2f6a81bd02d933c9280c 119 Pfam PF01934 Protein of unknown function DUF86 14 104 3.4E-21 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS03255 f99062e7846418ee46fd6467b61cca30 507 Pfam PF11741 AMIN domain 33 116 1.2E-14 T 06-07-2017 IPR021731 AMIN domain APT55_RS11830 6d93f863a164211671e862e338f6ecaf 293 Pfam PF01061 ABC-2 type transporter 39 252 2.1E-24 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS23470 070760749e7c93eed989287334ecbbf9 82 Pfam PF10718 Hypothetical chloroplast protein Ycf34 1 76 3.9E-39 T 06-07-2017 IPR019656 Uncharacterised protein family Ycf34 APT55_RS27790 0714cfa22b4c361f66df496374c42481 350 SUPERFAMILY SSF52266 242 303 7.94E-7 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS27790 0714cfa22b4c361f66df496374c42481 350 SUPERFAMILY SSF52266 38 139 7.94E-7 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain APT55_RS22710 bf6e49a8a91e1e86dd7e59f59c6fcc38 140 ProDom PD082852 PRECURSOR SIGNAL PROTEASE SIMILAR SERINE KINASE HYDROLASE ENDOPEPTIDASE GLU-SPECIFIC V8-LIKE 23 138 5.0E-12 T 06-07-2017 IPR020336 Uncharacterised protein family Y2126 APT55_RS15240 f503b7e186ad29b1a214f5e4e13b4aed 95 TIGRFAM TIGR04042 MSMEG_0570_fam: MSMEG_0570 family protein 2 90 4.3E-36 T 06-07-2017 IPR023846 Conserved hypothetical protein CHP04042, MSMEG0570 APT55_RS01635 6a99fd1656af5d657991d23d8ec0be3a 201 Pfam PF11375 Protein of unknown function (DUF3177) 10 199 9.8E-78 T 06-07-2017 IPR021515 Protein of unknown function DUF3177 APT55_RS01330 681697257dc738b5f529a5fa32129df3 242 Pfam PF11209 Protein of unknown function (DUF2993) 4 232 3.7E-34 T 06-07-2017 IPR021373 Protein of unknown function DUF2993 APT55_RS15080 4353a029500bfae9e36c47f8a983f432 150 TIGRFAM TIGR02664 nitr_red_assoc: conserved hypothetical protein 4 147 4.9E-53 T 06-07-2017 IPR013481 Conserved hypothetical protein CHP02664, nitrate reductase-associated APT55_RS15080 4353a029500bfae9e36c47f8a983f432 150 Pfam PF09655 Conserved nitrate reductase-associated protein (Nitr_red_assoc) 4 147 7.3E-61 T 06-07-2017 IPR013481 Conserved hypothetical protein CHP02664, nitrate reductase-associated APT55_RS12665 d24de4b6cdebb4172fa7b42d1c7974f1 126 Pfam PF01899 Na+/H+ ion antiporter subunit 6 119 1.0E-6 T 06-07-2017 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 APT55_RS30265 e9ee5cacaa6e137e1d55aa36a0eacb8c 119 SUPERFAMILY SSF54909 1 112 3.75E-33 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel APT55_RS30265 e9ee5cacaa6e137e1d55aa36a0eacb8c 119 Pfam PF03795 YCII-related domain 1 112 2.1E-24 T 06-07-2017 IPR005545 YCII-related APT55_RS30265 e9ee5cacaa6e137e1d55aa36a0eacb8c 119 Gene3D G3DSA:3.30.70.1060 1 113 1.4E-36 T 06-07-2017 APT55_RS19630 8db411441b2d2aab6ce74d77416b5abb 186 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 114 173 1.8E-14 T 06-07-2017 APT55_RS01120 988ceb1e8a0654347370a2fb372a5aa7 145 Pfam PF12098 Protein of unknown function (DUF3574) 44 145 1.2E-36 T 06-07-2017 IPR021957 Protein of unknown function DUF3574 APT55_RS20300 259ebeee11409c003f242dea66accefe 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 319 1.0E-48 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS29140 f37a0e0a062d6f8b8a8e8f44b661fb05 234 Pfam PF14014 Protein of unknown function (DUF4230) 69 220 4.6E-33 T 06-07-2017 IPR025324 Protein of unknown function DUF4230 APT55_RS23940 34c196cc6db5d97cc9f0a851766b7d0e 102 SUPERFAMILY SSF54913 2 96 1.91E-8 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT55_RS05090 c6ffdc3d0bc2aea04b3547b3a2b10047 328 Pfam PF02361 Cobalt transport protein 18 301 5.1E-46 T 06-07-2017 IPR003339 ABC/ECF transporter, transmembrane component APT55_RS28995 cb584fb924a47fbdf8b7c6d667b59751 86 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 63 86 6.2E-9 T 06-07-2017 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 APT55_RS02785 f98d44dfeed0cae4a7793512ffa61578 269 Pfam PF13649 Methyltransferase domain 45 136 7.2E-15 T 06-07-2017 APT55_RS02785 f98d44dfeed0cae4a7793512ffa61578 269 Gene3D G3DSA:3.40.50.150 22 267 1.1E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS02785 f98d44dfeed0cae4a7793512ffa61578 269 SUPERFAMILY SSF53335 7 216 4.15E-29 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS15430 4478168e1463b29890449229487b0bab 149 Pfam PF13471 Transglutaminase-like superfamily 38 141 7.8E-22 T 06-07-2017 IPR032708 Microcin J25-processing protein McjB, C-terminal APT55_RS02615 4306e50297f84f00e03b7a5bd062a8fd 72 Pfam PF04255 Protein of unknown function (DUF433) 8 61 3.3E-20 T 06-07-2017 IPR007367 Protein of unknown function DUF433 APT55_RS02615 4306e50297f84f00e03b7a5bd062a8fd 72 Gene3D G3DSA:1.10.10.10 8 61 9.1E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain APT55_RS02615 4306e50297f84f00e03b7a5bd062a8fd 72 SUPERFAMILY SSF46689 5 60 2.87E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 APT55_RS24415 fc710eb610b4a5ac4645fe70e8614d54 275 Pfam PF01061 ABC-2 type transporter 27 234 1.1E-23 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT55_RS07495 4b509c7bd133789dd37c6a6aa4c6fe55 94 Pfam PF02325 YGGT family 13 83 2.1E-13 T 06-07-2017 IPR003425 CCB3/YggT GO:0016020 APT55_RS23690 08e179e83fe604542a2bb0926d39285a 159 Pfam PF10229 Uncharacterized conserved protein (DUF2246) 29 139 5.9E-8 T 06-07-2017 IPR019362 Methylmalonic aciduria and homocystinuria type D protein GO:0009235 Reactome: R-HSA-196741|Reactome: R-HSA-3359473 APT55_RS22685 59ae9e8ea62e79b62136a002080e0826 116 Pfam PF03692 Putative zinc- or iron-chelating domain 6 81 3.2E-12 T 06-07-2017 IPR005358 Putative zinc- or iron-chelating domain containing protein APT55_RS08370 2a31867d7af1d085213f99873eaa720c 358 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 18 353 1.5E-98 T 06-07-2017 IPR010293 Na+-dependent bicarbonate transporter superfamily APT55_RS07365 e7a4a5251c4b9078c4d75b6d7eba4c1c 153 Pfam PF09912 Uncharacterized protein conserved in bacteria (DUF2141) 33 142 1.4E-37 T 06-07-2017 IPR018673 Protein of unknown function DUF2141 APT55_RS06290 8a789fe104c69044713cacbfadf41507 504 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 294 376 4.0E-12 T 06-07-2017 IPR010095 Transposase IS605, OrfB, C-terminal APT55_RS12680 d01f9fdc1965cb1824c01e5cf4ae0f69 166 Pfam PF13244 Domain of unknown function (DUF4040) 9 72 3.5E-13 T 06-07-2017 IPR025383 Domain of unknown function DUF4040 APT55_RS31390 b6009bf89279ed453fda217753d4b239 349 Pfam PF01939 Protein of unknown function DUF91 16 86 1.4E-5 T 06-07-2017 IPR002793 Endonuclease NucS APT55_RS29335 8f244193d60ad02f36722007679911b1 1322 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 583 1196 2.0E-6 T 06-07-2017 APT55_RS30930 813670d15e50c414a9cc79987726adc1 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 64 338 1.9E-38 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS06980 e3f463009576f8c558f7ca79c0f1d3a8 247 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 23 247 8.2E-35 T 06-07-2017 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 APT55_RS24385 8c3c15bcd93aeb13ef2bdd7e8223f3fe 510 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 93 252 5.2E-7 T 06-07-2017 APT55_RS27945 2c96a5675c7520835406909f8c54a879 347 Pfam PF00953 Glycosyl transferase family 4 79 221 6.2E-30 T 06-07-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APT55_RS13885 f4fe4bbab49bb7dbc439dd4a05b49e3e 382 Pfam PF13449 Esterase-like activity of phytase 53 363 1.6E-78 T 06-07-2017 IPR027372 Phytase-like domain APT55_RS13275 95854e018eecddce729e78d1399e638e 204 Pfam PF09335 SNARE associated Golgi protein 34 164 3.4E-21 T 06-07-2017 IPR032816 SNARE associated Golgi protein APT55_RS18660 3a189453950a12426411c543e8ec675a 324 Pfam PF00395 S-layer homology domain 98 139 3.9E-13 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS18660 3a189453950a12426411c543e8ec675a 324 Pfam PF00395 S-layer homology domain 244 288 7.8E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS18660 3a189453950a12426411c543e8ec675a 324 Pfam PF00395 S-layer homology domain 35 77 2.4E-14 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS01435 264b8b1f24794268e4a8eebdcaac3119 373 Pfam PF01882 Protein of unknown function DUF58 210 285 8.8E-15 T 06-07-2017 IPR002881 Domain of unknown function DUF58 APT55_RS06730 ca3d4234b8fc29612793c562cb5d85a5 126 Pfam PF04241 Protein of unknown function (DUF423) 19 107 5.1E-30 T 06-07-2017 IPR006696 Protein of unknown function DUF423 APT55_RS11355 fbc587e0a897404668ddd3ca50e35f2d 143 Pfam PF01724 Domain of unknown function DUF29 3 142 6.0E-52 T 06-07-2017 IPR002636 Protein from unkown function DUF29 APT55_RS24130 931166dc9043831e080cd2622ec3f92e 159 Pfam PF11848 Domain of unknown function (DUF3368) 112 153 5.0E-7 T 06-07-2017 IPR021799 Protein of unknown function DUF3368 APT55_RS16625 4b23d7eabdeecae05dbdba1938cb1f5e 593 Pfam PF09992 Phosphodiester glycosidase 471 590 2.0E-32 T 06-07-2017 IPR018711 Phosphodiester glycosidase APT55_RS26745 e5b3f6fc89bd509622ba087c64923bf3 114 Pfam PF01934 Protein of unknown function DUF86 11 105 2.8E-19 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS26745 e5b3f6fc89bd509622ba087c64923bf3 114 Gene3D G3DSA:1.20.120.580 67 107 1.2E-5 T 06-07-2017 APT55_RS22885 df2bd7a1b63d51cfbf19d3fd5955a958 180 Pfam PF11947 Protein of unknown function (DUF3464) 12 170 2.3E-53 T 06-07-2017 IPR021855 Protein of unknown function DUF3464 APT55_RS04160 5e4591f7dd38cd778913ef781471c7e1 168 Gene3D G3DSA:2.60.120.260 43 165 4.1E-4 T 06-07-2017 IPR008979 Galactose-binding domain-like APT55_RS05175 47e84372640a40a1da2af5483f171949 180 Pfam PF09626 Dihaem cytochrome c 66 169 1.3E-24 T 06-07-2017 IPR018588 Dihaem cytochrome c APT55_RS12675 411d3f13b46a860be3894c5d8b662f8c 93 Pfam PF03334 Na+/H+ antiporter subunit 9 84 3.2E-15 T 06-07-2017 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 APT55_RS29775 da0fc9b65d5cb58c3f9f1cf5d5616ac0 230 Gene3D G3DSA:3.30.420.10 65 140 8.4E-4 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 APT55_RS29775 da0fc9b65d5cb58c3f9f1cf5d5616ac0 230 Pfam PF13610 DDE domain 70 198 2.4E-34 T 06-07-2017 IPR032874 DDE domain APT55_RS08625 eb97c7909d5d34228e616f014865a946 136 Pfam PF12966 N-ATPase, AtpR subunit 50 122 8.7E-8 T 06-07-2017 IPR017581 N-ATPase, AtpR subunit-like APT55_RS12255 c05b96ab085d02c1a48293f22b633476 191 Pfam PF03729 Short repeat of unknown function (DUF308) 16 85 1.7E-11 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane APT55_RS12255 c05b96ab085d02c1a48293f22b633476 191 Pfam PF03729 Short repeat of unknown function (DUF308) 72 140 2.4E-8 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane APT55_RS04300 94b3bf22e4face1ff89f76bc0710e8e6 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 2.2E-14 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT55_RS30925 d0f9933c03022595b00d2eb32739bd24 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 298 2.8E-37 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 APT55_RS22985 6fbbea565bd6ad1168a17c45f3e7f767 271 Pfam PF04892 VanZ like family 16 130 1.5E-17 T 06-07-2017 IPR006976 VanZ-like APT55_RS01965 3ab8e7aa90282e82d96deb4c970c7c62 225 SUPERFAMILY SSF56112 51 173 5.43E-10 T 06-07-2017 IPR011009 Protein kinase-like domain APT55_RS06840 1a39e3af070b5e492cb1c0ccf655a708 83 SUPERFAMILY SSF47598 1 41 6.67E-6 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 APT55_RS30475 37593901e374478bccca2a93e8083718 226 Gene3D G3DSA:3.40.50.880 5 200 1.9E-49 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS30475 37593901e374478bccca2a93e8083718 226 Pfam PF03575 Peptidase family S51 2 185 5.6E-49 T 06-07-2017 IPR005320 Peptidase S51 GO:0006508|GO:0008236 APT55_RS30475 37593901e374478bccca2a93e8083718 226 SUPERFAMILY SSF52317 11 189 2.39E-27 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like APT55_RS17780 484281b550fb7a91051a66084b6be44e 393 Pfam PF14234 Domain of unknown function (DUF4336) 39 356 1.3E-136 T 06-07-2017 IPR025638 Protein of unknown function DUF4336 APT55_RS01930 61cc594fe787180a8a1df9145ceec80d 169 Pfam PF06146 Phosphate-starvation-inducible E 73 138 1.3E-12 T 06-07-2017 IPR020948 Phosphate-starvation-induced PsiE-like APT55_RS05370 77d5e4f8f984995a2901b471f295fa54 312 Pfam PF00395 S-layer homology domain 86 132 0.02 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS05370 77d5e4f8f984995a2901b471f295fa54 312 Pfam PF00395 S-layer homology domain 166 212 4.9E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS20715 673096ee0bb8d955ad3dcdf652bf08cf 137 Pfam PF10825 Protein of unknown function (DUF2752) 35 79 6.5E-14 T 06-07-2017 IPR021215 Protein of unknown function DUF2752 APT55_RS19895 17bb62c6c45a2c13f4cccc7477df2899 114 Pfam PF01934 Protein of unknown function DUF86 13 106 9.2E-25 T 06-07-2017 IPR008201 Protein of unknown function DUF86 APT55_RS19895 17bb62c6c45a2c13f4cccc7477df2899 114 Gene3D G3DSA:1.20.120.580 68 109 2.9E-7 T 06-07-2017 APT55_RS06405 f2c7c2f942a5938171280d635b8c00d9 186 Pfam PF03592 Terminase small subunit 2 160 5.5E-32 T 06-07-2017 IPR005335 Terminase small subunit GO:0006323 APT55_RS03760 dcf9704155a8f2cf9216a90c6c884446 561 Pfam PF00999 Sodium/hydrogen exchanger family 57 433 6.1E-65 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT55_RS14225 22ef7f6196fae5187c9c291b56961ed8 344 Pfam PF01594 Domain of unknown function DUF20 6 328 1.3E-66 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like APT55_RS20800 bd5878f93dd1a4b7e93a00991908b551 454 Pfam PF09925 Predicted membrane protein (DUF2157) 16 151 5.5E-26 T 06-07-2017 IPR018677 Domain of unknown function DUF2157 APT55_RS11450 d3f86eefcabf8fe250ecea371bca76ee 232 Pfam PF01618 MotA/TolQ/ExbB proton channel family 70 192 9.1E-27 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 APT55_RS31530 7ceb2c90dd6ba202ed80f31cbc4b425d 263 Pfam PF05908 Poly-gamma-glutamate hydrolase 64 245 1.6E-33 T 06-07-2017 IPR008585 Poly-gamma-glutamate hydrolase APT55_RS24075 73db46ee4266824d527f6490787999c3 102 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 19 89 2.7E-26 T 06-07-2017 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 APT55_RS14865 d79996558376af6072a02d42bb2968cd 334 Pfam PF03773 Predicted permease 4 330 1.2E-80 T 06-07-2017 IPR005524 Predicted permease DUF318 APT55_RS28905 679e158c341803ab148d56ea6abaf082 78 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 11 69 2.4E-7 T 06-07-2017 IPR009241 Toxin HigB-like APT55_RS24005 57bf2eaeeb6941408c595b913d8ddb17 165 Pfam PF13767 Domain of unknown function (DUF4168) 56 134 1.4E-6 T 06-07-2017 IPR025433 Domain of unknown function DUF4168 APT55_RS25565 d0f270588e15dfd24b2df806105ac9fe 577 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 86 245 6.3E-21 T 06-07-2017 APT55_RS02545 3f5fd61fa4dca1b2d98aaefc8e946b09 125 Pfam PF14424 The BURPS668_1122 family of deaminases 60 119 2.7E-13 T 06-07-2017 IPR032721 Deaminases, BURPS668_1122 family APT55_RS04130 4e7b5578fdc21177763809ea80203882 825 SUPERFAMILY SSF58104 595 806 3.53E-7 T 06-07-2017 APT55_RS30085 06dd3ae5170f82d533fbd3b41f870c1a 341 Pfam PF14239 RRXRR protein 4 156 4.3E-31 T 06-07-2017 IPR025938 RRXRR domain APT55_RS26070 7d65ba3a0f2d75076bbf62bf71394a0e 101 Pfam PF10693 Protein of unknown function (DUF2499) 3 91 3.4E-42 T 06-07-2017 IPR019634 Uncharacterised protein family Ycf49 APT55_RS19860 51ce1b3e4e3a537136af282e92c0e5ff 260 Pfam PF11300 Protein of unknown function (DUF3102) 29 87 1.1E-10 T 06-07-2017 IPR021451 Protein of unknown function DUF3102 APT55_RS26920 ed22070b0acba99801b00fbf6afe0f9b 468 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 41 207 8.9E-20 T 06-07-2017 APT55_RS13130 7f5e490f9815eaa6cabfb800ced7e6c2 231 Gene3D G3DSA:1.20.5.50 29 128 4.0E-4 T 06-07-2017 APT55_RS07465 1d270d4c711753b845c74e1971958446 279 Pfam PF02517 CAAX protease self-immunity 143 229 8.0E-9 T 06-07-2017 IPR003675 CAAX amino terminal protease GO:0016020 APT55_RS00995 4c818ee347826948ab9e8877e3f1f207 132 Pfam PF03703 Bacterial PH domain 40 113 3.2E-17 T 06-07-2017 IPR005182 Domain of unknown function DUF304 APT55_RS10495 ecccbdac5d7a0e9c9999821090dde8d5 617 Pfam PF00395 S-layer homology domain 90 132 2.1E-7 T 06-07-2017 IPR001119 S-layer homology domain APT55_RS10495 ecccbdac5d7a0e9c9999821090dde8d5 617 Pfam PF04966 Carbohydrate-selective porin, OprB family 156 617 1.5E-43 T 06-07-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 APT55_RS06320 00136561f1164af5014d27259f680deb 196 Gene3D G3DSA:3.90.1570.10 4 191 1.8E-24 T 06-07-2017 IPR012296 Nuclease, putative, TT1808 APT55_RS06320 00136561f1164af5014d27259f680deb 196 SUPERFAMILY SSF52980 2 191 1.93E-26 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT55_RS06320 00136561f1164af5014d27259f680deb 196 Pfam PF05685 Putative restriction endonuclease 11 188 1.3E-34 T 06-07-2017 IPR008538 Domain of unknown function DUF820 APT55_RS16390 fcf53fdb623498a344e8ed700f5044c5 65 Pfam PF11165 Protein of unknown function (DUF2949) 7 61 6.2E-30 T 06-07-2017 IPR021336 Protein of unknown function DUF2949 APT55_RS05515 86050e93ab9a6082559eb3a7cd5362ba 255 Pfam PF06051 Domain of Unknown Function (DUF928) 49 247 1.4E-41 T 06-07-2017 IPR010328 Protein of unknown function DUF928 APT55_RS07685 06ed777874e1cbc89544179066a7db4f 162 Pfam PF14325 Domain of unknown function (DUF4383) 17 149 1.6E-35 T 06-07-2017 IPR025492 Protein of unknown function DUF4383 APT55_RS06590 b344357bd541e4009ada7a400402c141 110 Pfam PF04483 Protein of unknown function (DUF565) 51 110 3.3E-23 T 06-07-2017 IPR007572 Uncharacterised protein family Ycf20 APT55_RS04100 30097a7ad68f09a53bddf6b88cd929ec 81 Pfam PF03683 Uncharacterised protein family (UPF0175) 6 74 2.0E-24 T 06-07-2017 IPR005368 Uncharacterised protein family UPF0175 APT55_RS21565 efc89e310a80859b2eef6bc9af41efa0 62 Pfam PF11165 Protein of unknown function (DUF2949) 6 60 4.7E-28 T 06-07-2017 IPR021336 Protein of unknown function DUF2949 APT55_RS16920 add06b34c3a811d980f0bd15556e7dfe 104 Pfam PF07878 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 18 53 5.6E-8 T 06-07-2017 IPR012869 CopG-like ribbon-helix-helix domain APT55_RS24135 55350810e8a5821d86a09c559d819f49 94 Pfam PF03683 Uncharacterised protein family (UPF0175) 7 81 3.1E-17 T 06-07-2017 IPR005368 Uncharacterised protein family UPF0175 APT55_RS20820 1808ff1deecd6ff339b009cf6b9bb904 103 Pfam PF03647 Transmembrane proteins 14C 6 94 2.5E-21 T 06-07-2017 IPR005349 TMEM14 family GO:0016020 APT55_RS30580 1f6a5499a207c9a2404a6aef00c0e73e 143 Gene3D G3DSA:1.10.260.40 20 87 2.1E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 APT55_RS26590 8538fed930b1d4b9da1993ee17eb343e 246 Pfam PF11209 Protein of unknown function (DUF2993) 20 162 1.2E-13 T 06-07-2017 IPR021373 Protein of unknown function DUF2993 APT55_RS12065 8641c3ff409c0ebd2f4ebad01357cfff 144 Pfam PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase 41 125 3.5E-28 T 06-07-2017 IPR025564 Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain APT55_RS17300 83af57afccd6cda6b31299778cc0b163 155 Pfam PF08847 Domain of unknown function (DUF1817) 5 149 5.8E-62 T 06-07-2017 IPR014946 Protein chlororespiratory reduction 6 APT55_RS04090 a540cbb65e698c60579f6f5503448311 87 Gene3D G3DSA:3.30.300.20 33 55 5.7E-4 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta APT55_RS05425 57c74fb849ae12c7162ef9faa1027927 289 Pfam PF04773 FecR protein 80 180 1.2E-11 T 06-07-2017 IPR006860 FecR protein APT55_RS09850 7b48f4d582b3df037a714acd769e2a78 404 Pfam PF01548 Transposase 7 167 7.5E-12 T 06-07-2017 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 APT55_RS28570 7d6f57b28d8de818e8b4efdbf9515ac7 231 Pfam PF01944 Stage II sporulation protein M 53 217 1.2E-9 T 06-07-2017 IPR002798 Stage II sporulation protein M-like APT55_RS23825 d5b55cf61a1c29a47ea624df15b749a5 81 Pfam PF10047 Protein of unknown function (DUF2281) 10 40 6.5E-6 T 06-07-2017 IPR018739 Domain of unknown function DUF2281 APT55_RS26510 fc4b8f89158f9330a005943b58eaeb98 344 Pfam PF16734 Type IV pilin-like G and H, putative 228 337 2.8E-20 T 06-07-2017 IPR031975 Type IV pilin-like putative secretion pathway protein G/H APT55_RS02200 e73dd1caedefa26a1c31fc617c547952 702 SUPERFAMILY SSF56300 482 543 3.99E-7 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS02200 e73dd1caedefa26a1c31fc617c547952 702 SUPERFAMILY SSF56300 129 188 3.99E-7 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS02200 e73dd1caedefa26a1c31fc617c547952 702 SUPERFAMILY SSF56300 284 307 3.99E-7 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS02200 e73dd1caedefa26a1c31fc617c547952 702 SUPERFAMILY SSF56300 403 435 3.99E-7 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like APT55_RS07345 af03af66e04af0fe8ccfdf8fd6eb42c8 226 Pfam PF05019 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 17 222 1.2E-31 T 06-07-2017 IPR007715 Ubiquinone biosynthesis protein Coq4 GO:0006744 APT55_RS11025 cda8c33583940cabb4e62828931e2822 89 Pfam PF04226 Transglycosylase associated protein 34 84 4.3E-8 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 APT55_RS20240 d5627fb371ee01deca71f1f0e7c24ccc 340 SUPERFAMILY SSF53067 181 330 1.58E-11 T 06-07-2017 APT55_RS08485 ad7c8bbbfc72579a7f21e1face15832b 86 Pfam PF03683 Uncharacterised protein family (UPF0175) 19 80 3.4E-11 T 06-07-2017 IPR005368 Uncharacterised protein family UPF0175 APT55_RS19295 675f23da94d9d5bb713d9a1582ae4c0b 74 Pfam PF10118 Predicted metal-dependent hydrolase 12 61 1.9E-10 T 06-07-2017 IPR016516 Uncharacterised conserved protein UCP07580 APT55_RS09440 81e6fd2854c89c88b9bff4ce4d1c051c 70 Pfam PF10999 Protein of unknown function (DUF2839) 1 67 2.5E-33 T 06-07-2017 IPR021262 Protein of unknown function DUF2839 APT55_RS27620 726f9b46fe205be9749094eab96fde85 105 Pfam PF11267 Domain of unknown function (DUF3067) 5 101 3.0E-42 T 06-07-2017 IPR021420 Domain of unknown function DUF3067 APT55_RS28415 48d606de0477689153c1622cb3c9336e 253 Pfam PF14252 Domain of unknown function (DUF4347) 104 251 8.2E-59 T 06-07-2017 IPR025592 Domain of unknown function DUF4347 APT55_RS23980 8b10d37114f508840149d2500b8540c0 201 Pfam PF11237 Protein of unknown function (DUF3038) 30 193 1.7E-64 T 06-07-2017 IPR021399 Protein of unknown function DUF3038 APT55_RS22165 259f65d73c51f82dab41af594a138903 215 Pfam PF01169 Uncharacterized protein family UPF0016 134 207 4.8E-22 T 06-07-2017 IPR001727 Gdt1 family GO:0032472 APT55_RS22165 259f65d73c51f82dab41af594a138903 215 Pfam PF01169 Uncharacterized protein family UPF0016 8 79 3.3E-21 T 06-07-2017 IPR001727 Gdt1 family GO:0032472 APT55_RS17950 4c6ebda2babb43436e650ce0a58b4989 376 Pfam PF08852 Protein of unknown function (DUF1822) 10 374 2.9E-93 T 06-07-2017 IPR014951 Protein of unknown function DUF1822 APT55_RS29680 a6142272f7b1334253acfd784bfed8bb 245 Gene3D G3DSA:3.30.420.40 68 122 7.4E-4 T 06-07-2017 APT55_RS02490 ec911be6e646c772de7584c43ff4b738 165 Pfam PF04116 Fatty acid hydroxylase superfamily 12 140 7.0E-15 T 06-07-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 APT55_RS02775 6153a2953b008f954630280993ff55ce 388 Pfam PF04143 Sulphur transport 58 375 2.3E-71 T 06-07-2017 IPR007272 Sulphur transport domain APT55_RS13615 4d2944cb01b033fa95e35b3767ededc4 171 Pfam PF14280 Domain of unknown function (DUF4365) 8 164 7.7E-25 T 06-07-2017 IPR025375 Domain of unknown function DUF4365 APT55_RS31395 58c4b7780eed33bf29fe44a551c439c1 379 Pfam PF13280 WYL domain 175 371 3.8E-21 T 06-07-2017 IPR026881 WYL domain APT55_RS22650 08085d5bb3720c6b61c703a92ae23f98 268 Pfam PF04278 Tic22-like family 27 235 1.3E-46 T 06-07-2017 IPR007378 Tic22-like