locus-tag class description D9L16_mgp04 PF00119 ATP synthase A chain D9L16_mgp05 PF00361 Proton-conducting membrane transporter D9L16_mgp05 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D9L16_mgp06 PF00137 ATP synthase subunit C D9L16_mgp07 PF00137 ATP synthase subunit C D9L16_mgp08 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D9L16_mgp08 PF00361 Proton-conducting membrane transporter D9L16_mgp09 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D9L16_mgp10 PF00146 NADH dehydrogenase D9L16_mgp11 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D9L16_mgp11 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D9L16_mgp12 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D9L16_mgp13 PF00510 Cytochrome c oxidase subunit III D9L16_mgp14 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D9L16_mgp15 PF00361 Proton-conducting membrane transporter MRET_0017 PF00226 DnaJ domain MRET_0017 PF01556 DnaJ C terminal domain MRET_0017 PF00684 DnaJ central domain MRET_0018 PF00365 Phosphofructokinase MRET_0024 PF00226 DnaJ domain MRET_0024 PF01556 DnaJ C terminal domain MRET_0024 PF00684 DnaJ central domain MRET_0025 PF01434 Peptidase family M41 MRET_0025 PF17862 AAA+ lid domain MRET_0025 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0027 PF04408 Helicase associated domain (HA2) MRET_0027 PF00270 DEAD/DEAH box helicase MRET_0027 PF00271 Helicase conserved C-terminal domain MRET_0027 PF11898 Domain of unknown function (DUF3418) MRET_0027 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_0031 PF00271 Helicase conserved C-terminal domain MRET_0031 PF11898 Domain of unknown function (DUF3418) MRET_0031 PF00270 DEAD/DEAH box helicase MRET_0031 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_0031 PF04408 Helicase associated domain (HA2) MRET_0037 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRET_0047 PF02734 DAK2 domain MRET_0047 PF02733 Dak1 domain MRET_0051 PF03232 Ubiquinone biosynthesis protein COQ7 MRET_0054 PF02817 e3 binding domain MRET_0054 PF00364 Biotin-requiring enzyme MRET_0054 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRET_0057 PF00468 Ribosomal protein L34 MRET_0068 PF00732 GMC oxidoreductase MRET_0068 PF05199 GMC oxidoreductase MRET_0069 PF05199 GMC oxidoreductase MRET_0069 PF00732 GMC oxidoreductase MRET_0077 PF13193 AMP-binding enzyme C-terminal domain MRET_0077 PF00501 AMP-binding enzyme MRET_0090 PF10531 SLBB domain MRET_0090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MRET_0090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MRET_0091 PF02104 SURF1 family MRET_0094 PF00294 pfkB family carbohydrate kinase MRET_0095 PF00005 ABC transporter MRET_0095 PF00664 ABC transporter transmembrane region MRET_0098 PF03109 ABC1 family MRET_0099 PF00334 Nucleoside diphosphate kinase MRET_0110 PF02463 RecF/RecN/SMC N terminal domain MRET_0111 PF08546 Ketopantoate reductase PanE/ApbA C terminal MRET_0111 PF02558 Ketopantoate reductase PanE/ApbA MRET_0114 PF01026 TatD related DNase MRET_0123 PF01053 Cys/Met metabolism PLP-dependent enzyme MRET_0135 PF00561 alpha/beta hydrolase fold MRET_0136 PF04227 Indigoidine synthase A like protein MRET_0143 PF01641 SelR domain MRET_0145 PF00206 Lyase MRET_0145 PF10397 Adenylosuccinate lyase C-terminus MRET_0151 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRET_0151 PF01872 RibD C-terminal domain MRET_0156 PF00333 Ribosomal protein S5, N-terminal domain MRET_0156 PF03719 Ribosomal protein S5, C-terminal domain MRET_0161 PF00549 CoA-ligase MRET_0161 PF02629 CoA binding domain MRET_0167 PF00069 Protein kinase domain MRET_0180 PF01238 Phosphomannose isomerase type I MRET_0186 PF02256 Iron hydrogenase small subunit MRET_0186 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MRET_0186 PF00037 4Fe-4S binding domain MRET_0186 PF02906 Iron only hydrogenase large subunit, C-terminal domain MRET_0188 PF00557 Metallopeptidase family M24 MRET_0188 PF05195 Aminopeptidase P, N-terminal domain MRET_0195 PF05496 Holliday junction DNA helicase RuvB P-loop domain MRET_0195 PF05491 RuvB C-terminal winged helix domain MRET_0195 PF17864 RuvB AAA lid domain MRET_0196 PF01208 Uroporphyrinogen decarboxylase (URO-D) MRET_0208 PF00005 ABC transporter MRET_0208 PF12848 ABC transporter MRET_0211 PF01812 5-formyltetrahydrofolate cyclo-ligase family MRET_0224 PF02628 Cytochrome oxidase assembly protein MRET_0227 PF00271 Helicase conserved C-terminal domain MRET_0227 PF00270 DEAD/DEAH box helicase MRET_0227 PF12300 ATP-dependent RNA helicase RhlB MRET_0241 PF02403 Seryl-tRNA synthetase N-terminal domain MRET_0241 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_0250 PF04434 SWIM zinc finger MRET_0250 PF00176 SNF2 family N-terminal domain MRET_0250 PF00271 Helicase conserved C-terminal domain MRET_0254 PF00271 Helicase conserved C-terminal domain MRET_0254 PF00270 DEAD/DEAH box helicase MRET_0254 PF08148 DSHCT (NUC185) domain MRET_0260 PF00271 Helicase conserved C-terminal domain MRET_0260 PF00270 DEAD/DEAH box helicase MRET_0265 PF00271 Helicase conserved C-terminal domain MRET_0265 PF00270 DEAD/DEAH box helicase MRET_0267 PF00696 Amino acid kinase family MRET_0267 PF01472 PUA domain MRET_0273 PF07690 Major Facilitator Superfamily MRET_0288 PF04055 Radical SAM superfamily MRET_0288 PF00583 Acetyltransferase (GNAT) family MRET_0288 PF16199 Radical_SAM C-terminal domain MRET_0289 PF02469 Fasciclin domain MRET_0291 PF01116 Fructose-bisphosphate aldolase class-II MRET_0295 PF00141 Peroxidase MRET_0296 PF00719 Inorganic pyrophosphatase MRET_0297 PF00364 Biotin-requiring enzyme MRET_0297 PF02780 Transketolase, C-terminal domain MRET_0297 PF02779 Transketolase, pyrimidine binding domain MRET_0302 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRET_0303 PF02223 Thymidylate kinase MRET_0308 PF01406 tRNA synthetases class I (C) catalytic domain MRET_0308 PF09190 DALR domain MRET_0314 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRET_0314 PF10414 Sirohaem synthase dimerisation region MRET_0319 PF07714 Protein tyrosine kinase MRET_0337 PF00226 DnaJ domain MRET_0337 PF00684 DnaJ central domain MRET_0337 PF01556 DnaJ C terminal domain MRET_0339 PF00271 Helicase conserved C-terminal domain MRET_0339 PF00270 DEAD/DEAH box helicase MRET_0346 PF00690 Cation transporter/ATPase, N-terminus MRET_0346 PF00689 Cation transporting ATPase, C-terminus MRET_0353 PF02875 Mur ligase family, glutamate ligase domain MRET_0353 PF08245 Mur ligase middle domain MRET_0357 PF00303 Thymidylate synthase MRET_0361 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRET_0367 PF16363 GDP-mannose 4,6 dehydratase MRET_0381 PF01965 DJ-1/PfpI family MRET_0382 PF00501 AMP-binding enzyme MRET_0392 PF00753 Metallo-beta-lactamase superfamily MRET_0392 PF12706 Beta-lactamase superfamily domain MRET_0395 PF00271 Helicase conserved C-terminal domain MRET_0395 PF12300 ATP-dependent RNA helicase RhlB MRET_0395 PF00270 DEAD/DEAH box helicase MRET_0399 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRET_0409 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0409 PF17862 AAA+ lid domain MRET_0409 PF01434 Peptidase family M41 MRET_0413 PF00069 Protein kinase domain MRET_0413 PF03793 PASTA domain MRET_0423 PF08676 MutL C terminal dimerisation domain MRET_0423 PF01119 DNA mismatch repair protein, C-terminal domain MRET_0428 PF00291 Pyridoxal-phosphate dependent enzyme MRET_0431 PF16916 Dimerisation domain of Zinc Transporter MRET_0431 PF01545 Cation efflux family MRET_0438 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRET_0438 PF02436 Conserved carboxylase domain MRET_0438 PF00682 HMGL-like MRET_0438 PF02785 Biotin carboxylase C-terminal domain MRET_0438 PF00364 Biotin-requiring enzyme MRET_0438 PF00289 Biotin carboxylase, N-terminal domain MRET_0453 PF01329 Pterin 4 alpha carbinolamine dehydratase MRET_0460 PF00270 DEAD/DEAH box helicase MRET_0460 PF08148 DSHCT (NUC185) domain MRET_0460 PF00271 Helicase conserved C-terminal domain MRET_0464 PF07690 Major Facilitator Superfamily MRET_0468 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_0468 PF00271 Helicase conserved C-terminal domain MRET_0468 PF04408 Helicase associated domain (HA2) MRET_0468 PF11898 Domain of unknown function (DUF3418) MRET_0468 PF00270 DEAD/DEAH box helicase MRET_0476 PF00815 Histidinol dehydrogenase MRET_0477 PF01894 Uncharacterised protein family UPF0047 MRET_0479 PF00069 Protein kinase domain MRET_0479 PF03793 PASTA domain MRET_0483 PF00271 Helicase conserved C-terminal domain MRET_0483 PF00270 DEAD/DEAH box helicase MRET_0484 PF00795 Carbon-nitrogen hydrolase MRET_0485 PF01156 Inosine-uridine preferring nucleoside hydrolase MRET_0487 PF00392 Bacterial regulatory proteins, gntR family MRET_0487 PF00155 Aminotransferase class I and II MRET_0492 PF01740 STAS domain MRET_0492 PF00916 Sulfate permease family MRET_0497 PF00300 Histidine phosphatase superfamily (branch 1) MRET_0499 PF06421 GTP-binding protein LepA C-terminus MRET_0499 PF00009 Elongation factor Tu GTP binding domain MRET_0499 PF00679 Elongation factor G C-terminus MRET_0502 PF00155 Aminotransferase class I and II MRET_0503 PF00171 Aldehyde dehydrogenase family MRET_0510 PF00270 DEAD/DEAH box helicase MRET_0510 PF00271 Helicase conserved C-terminal domain MRET_0522 PF00189 Ribosomal protein S3, C-terminal domain MRET_0522 PF07650 KH domain MRET_0523 PF00154 recA bacterial DNA recombination protein MRET_0534 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0534 PF17758 Proteasomal ATPase OB N-terminal domain MRET_0534 PF16450 Proteasomal ATPase OB C-terminal domain MRET_0544 PF00202 Aminotransferase class-III MRET_0556 PF06480 FtsH Extracellular MRET_0556 PF01434 Peptidase family M41 MRET_0556 PF17862 AAA+ lid domain MRET_0556 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0563 PF00227 Proteasome subunit MRET_0564 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region MRET_0564 PF07676 WD40-like Beta Propeller Repeat MRET_0564 PF00326 Prolyl oligopeptidase family MRET_0566 PF00155 Aminotransferase class I and II MRET_0568 PF00411 Ribosomal protein S11 MRET_0569 PF00380 Ribosomal protein S9/S16 MRET_0574 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRET_0576 PF03969 AFG1-like ATPase MRET_0579 PF00118 TCP-1/cpn60 chaperonin family MRET_0580 PF00069 Protein kinase domain MRET_0580 PF00211 Adenylate and Guanylate cyclase catalytic domain MRET_0589 PF02219 Methylenetetrahydrofolate reductase MRET_0606 PF00085 Thioredoxin MRET_0610 PF01434 Peptidase family M41 MRET_0610 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0610 PF17862 AAA+ lid domain MRET_0611 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MRET_0611 PF00056 lactate/malate dehydrogenase, NAD binding domain MRET_0613 PF00793 DAHP synthetase I family MRET_0615 PF04434 SWIM zinc finger MRET_0615 PF00176 SNF2 family N-terminal domain MRET_0615 PF00271 Helicase conserved C-terminal domain MRET_0620 PF00206 Lyase MRET_0620 PF14698 Argininosuccinate lyase C-terminal MRET_0626 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MRET_0626 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MRET_0629 PF00689 Cation transporting ATPase, C-terminus MRET_0629 PF00690 Cation transporter/ATPase, N-terminus MRET_0648 PF00398 Ribosomal RNA adenine dimethylase MRET_0655 PF05199 GMC oxidoreductase MRET_0655 PF00732 GMC oxidoreductase MRET_0660 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MRET_0660 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MRET_0671 PF00133 tRNA synthetases class I (I, L, M and V) MRET_0671 PF13603 Leucyl-tRNA synthetase, Domain 2 MRET_0671 PF09334 tRNA synthetases class I (M) MRET_0671 PF08264 Anticodon-binding domain of tRNA MRET_0675 PF12419 SNF2 Helicase protein MRET_0675 PF00271 Helicase conserved C-terminal domain MRET_0675 PF00176 SNF2 family N-terminal domain MRET_0676 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MRET_0676 PF01926 50S ribosome-binding GTPase MRET_0677 PF00291 Pyridoxal-phosphate dependent enzyme MRET_0677 PF00585 C-terminal regulatory domain of Threonine dehydratase MRET_0678 PF00005 ABC transporter MRET_0678 PF00664 ABC transporter transmembrane region MRET_0679 PF00550 Phosphopantetheine attachment site MRET_0679 PF00668 Condensation domain MRET_0679 PF00501 AMP-binding enzyme MRET_0679 PF13193 AMP-binding enzyme C-terminal domain MRET_0680 PF00270 DEAD/DEAH box helicase MRET_0680 PF00271 Helicase conserved C-terminal domain MRET_0688 PF03972 MmgE/PrpD family MRET_0689 PF00291 Pyridoxal-phosphate dependent enzyme MRET_0689 PF00571 CBS domain MRET_0690 PF00069 Protein kinase domain MRET_0690 PF03793 PASTA domain MRET_0695 PF00227 Proteasome subunit MRET_0698 PF00069 Protein kinase domain MRET_0699 PF13193 AMP-binding enzyme C-terminal domain MRET_0699 PF00501 AMP-binding enzyme MRET_0704 PF07687 Peptidase dimerisation domain MRET_0704 PF01546 Peptidase family M20/M25/M40 MRET_0709 PF01293 Phosphoenolpyruvate carboxykinase MRET_0714 PF14306 PUA-like domain MRET_0714 PF01747 ATP-sulfurylase MRET_0733 PF06472 ABC transporter transmembrane region 2 MRET_0733 PF00005 ABC transporter MRET_0739 PF00282 Pyridoxal-dependent decarboxylase conserved domain MRET_0743 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MRET_0743 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRET_0755 PF01336 OB-fold nucleic acid binding domain MRET_0755 PF00152 tRNA synthetases class II (D, K and N) MRET_0758 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MRET_0758 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MRET_0758 PF02769 AIR synthase related protein, C-terminal domain MRET_0775 PF00075 RNase H MRET_0776 PF00175 Oxidoreductase NAD-binding domain MRET_0776 PF00258 Flavodoxin MRET_0776 PF00667 FAD binding domain MRET_0776 PF00067 Cytochrome P450 MRET_0788 PF03793 PASTA domain MRET_0788 PF00069 Protein kinase domain MRET_0800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MRET_0800 PF00117 Glutamine amidotransferase class-I MRET_0803 PF00133 tRNA synthetases class I (I, L, M and V) MRET_0803 PF08264 Anticodon-binding domain of tRNA MRET_0804 PF00231 ATP synthase MRET_0811 PF00176 SNF2 family N-terminal domain MRET_0811 PF12419 SNF2 Helicase protein MRET_0811 PF00271 Helicase conserved C-terminal domain MRET_0821 PF01556 DnaJ C terminal domain MRET_0821 PF00226 DnaJ domain MRET_0821 PF00684 DnaJ central domain MRET_0822 PF01027 Inhibitor of apoptosis-promoting Bax1 MRET_0823 PF01521 Iron-sulphur cluster biosynthesis MRET_0824 PF01926 50S ribosome-binding GTPase MRET_0824 PF09269 Domain of unknown function (DUF1967) MRET_0824 PF01018 GTP1/OBG MRET_0826 PF00809 Pterin binding enzyme MRET_0830 PF01411 tRNA synthetases class II (A) MRET_0830 PF02272 DHHA1 domain MRET_0830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRET_0832 PF00106 short chain dehydrogenase MRET_0843 PF02441 Flavoprotein MRET_0845 PF00162 Phosphoglycerate kinase MRET_0846 PF00962 Adenosine/AMP deaminase MRET_0849 PF08543 Phosphomethylpyrimidine kinase MRET_0851 PF00136 DNA polymerase family B MRET_0851 PF03104 DNA polymerase family B, exonuclease domain MRET_0856 PF01266 FAD dependent oxidoreductase MRET_0859 PF01016 Ribosomal L27 protein MRET_0870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MRET_0871 PF00270 DEAD/DEAH box helicase MRET_0871 PF00271 Helicase conserved C-terminal domain MRET_0872 PF02785 Biotin carboxylase C-terminal domain MRET_0872 PF00289 Biotin carboxylase, N-terminal domain MRET_0872 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRET_0890 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRET_0890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRET_0894 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRET_0894 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRET_0898 PF00773 RNB domain MRET_0900 PF00270 DEAD/DEAH box helicase MRET_0900 PF11898 Domain of unknown function (DUF3418) MRET_0900 PF04408 Helicase associated domain (HA2) MRET_0900 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_0900 PF00271 Helicase conserved C-terminal domain MRET_0904 PF16193 AAA C-terminal domain MRET_0904 PF00004 ATPase family associated with various cellular activities (AAA) MRET_0904 PF12002 MgsA AAA+ ATPase C terminal MRET_0908 PF00155 Aminotransferase class I and II MRET_0910 PF02219 Methylenetetrahydrofolate reductase MRET_0913 PF00475 Imidazoleglycerol-phosphate dehydratase MRET_0917 PF00288 GHMP kinases N terminal domain MRET_0919 PF00462 Glutaredoxin MRET_0926 PF02803 Thiolase, C-terminal domain MRET_0926 PF00108 Thiolase, N-terminal domain MRET_0933 PF01960 ArgJ family MRET_0938 PF00684 DnaJ central domain MRET_0938 PF00226 DnaJ domain MRET_0938 PF01556 DnaJ C terminal domain MRET_0943 PF12300 ATP-dependent RNA helicase RhlB MRET_0943 PF00271 Helicase conserved C-terminal domain MRET_0943 PF00270 DEAD/DEAH box helicase MRET_0945 PF01554 MatE MRET_0947 PF00684 DnaJ central domain MRET_0947 PF01556 DnaJ C terminal domain MRET_0947 PF00226 DnaJ domain MRET_0956 PF00270 DEAD/DEAH box helicase MRET_0956 PF11898 Domain of unknown function (DUF3418) MRET_0956 PF04408 Helicase associated domain (HA2) MRET_0956 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_0956 PF00271 Helicase conserved C-terminal domain MRET_0958 PF07728 AAA domain (dynein-related subfamily) MRET_0958 PF08406 CbbQ/NirQ/NorQ C-terminal MRET_0960 PF00271 Helicase conserved C-terminal domain MRET_0960 PF00270 DEAD/DEAH box helicase MRET_0966 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MRET_0967 PF01593 Flavin containing amine oxidoreductase MRET_0979 PF00069 Protein kinase domain MRET_0983 PF00285 Citrate synthase, C-terminal domain MRET_0995 PF03793 PASTA domain MRET_0995 PF00069 Protein kinase domain MRET_1003 PF00180 Isocitrate/isopropylmalate dehydrogenase MRET_1003 PF18324 Hypothetical protein TT1725 MRET_1010 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MRET_1010 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MRET_1010 PF01189 16S rRNA methyltransferase RsmB/F MRET_1011 PF02558 Ketopantoate reductase PanE/ApbA MRET_1011 PF08546 Ketopantoate reductase PanE/ApbA C terminal MRET_1025 PF12419 SNF2 Helicase protein MRET_1025 PF00271 Helicase conserved C-terminal domain MRET_1025 PF00176 SNF2 family N-terminal domain MRET_1027 PF00069 Protein kinase domain MRET_1027 PF03793 PASTA domain MRET_1038 PF00677 Lumazine binding domain MRET_1041 PF00850 Histone deacetylase domain MRET_1049 PF01979 Amidohydrolase family MRET_1062 PF02110 Hydroxyethylthiazole kinase family MRET_1068 PF00850 Histone deacetylase domain MRET_1075 PF03793 PASTA domain MRET_1075 PF00069 Protein kinase domain MRET_1076 PF03481 Putative GTP-binding controlling metal-binding MRET_1076 PF01300 Telomere recombination MRET_1079 PF00501 AMP-binding enzyme MRET_1079 PF00668 Condensation domain MRET_1079 PF00550 Phosphopantetheine attachment site MRET_1079 PF07993 Male sterility protein MRET_1079 PF13193 AMP-binding enzyme C-terminal domain MRET_1089 PF02666 Phosphatidylserine decarboxylase MRET_1091 PF00581 Rhodanese-like domain MRET_1099 PF07690 Major Facilitator Superfamily MRET_1100 PF03793 PASTA domain MRET_1100 PF00069 Protein kinase domain MRET_1103 PF03793 PASTA domain MRET_1103 PF00069 Protein kinase domain MRET_1114 PF00012 Hsp70 protein MRET_1118 PF07714 Protein tyrosine kinase MRET_1131 PF00106 short chain dehydrogenase MRET_1141 PF02146 Sir2 family MRET_1158 PF00171 Aldehyde dehydrogenase family MRET_1174 PF00672 HAMP domain MRET_1174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRET_1174 PF00512 His Kinase A (phospho-acceptor) domain MRET_1174 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRET_1174 PF00072 Response regulator receiver domain MRET_1174 PF01627 Hpt domain MRET_1176 PF00177 Ribosomal protein S7p/S5e MRET_1178 PF00977 Histidine biosynthesis protein MRET_1179 PF03583 Secretory lipase MRET_1189 PF00550 Phosphopantetheine attachment site MRET_1189 PF07993 Male sterility protein MRET_1189 PF00501 AMP-binding enzyme MRET_1192 PF04072 Leucine carboxyl methyltransferase MRET_1196 PF00889 Elongation factor TS MRET_1202 PF00226 DnaJ domain MRET_1202 PF01556 DnaJ C terminal domain MRET_1202 PF00684 DnaJ central domain MRET_1217 PF05221 S-adenosyl-L-homocysteine hydrolase MRET_1217 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MRET_1218 PF00557 Metallopeptidase family M24 MRET_1218 PF01321 Creatinase/Prolidase N-terminal domain MRET_1219 PF00069 Protein kinase domain MRET_1227 PF03104 DNA polymerase family B, exonuclease domain MRET_1227 PF00136 DNA polymerase family B MRET_1234 PF00009 Elongation factor Tu GTP binding domain MRET_1236 PF01545 Cation efflux family MRET_1241 PF00334 Nucleoside diphosphate kinase MRET_1242 PF00575 S1 RNA binding domain MRET_1242 PF00773 RNB domain MRET_1242 PF08206 Ribonuclease B OB domain MRET_1242 PF17876 Cold shock domain MRET_1243 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRET_1243 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRET_1244 PF00483 Nucleotidyl transferase MRET_1244 PF01050 Mannose-6-phosphate isomerase MRET_1245 PF00444 Ribosomal protein L36 MRET_1248 PF00083 Sugar (and other) transporter MRET_1251 PF00366 Ribosomal protein S17 MRET_1253 PF00069 Protein kinase domain MRET_1253 PF03793 PASTA domain MRET_1256 PF00004 ATPase family associated with various cellular activities (AAA) MRET_1256 PF16193 AAA C-terminal domain MRET_1256 PF12002 MgsA AAA+ ATPase C terminal MRET_1261 PF00266 Aminotransferase class-V MRET_1264 PF00012 Hsp70 protein MRET_1270 PF13344 Haloacid dehalogenase-like hydrolase MRET_1273 PF07690 Major Facilitator Superfamily MRET_1276 PF13180 PDZ domain MRET_1278 PF00107 Zinc-binding dehydrogenase MRET_1278 PF08240 Alcohol dehydrogenase GroES-like domain MRET_1279 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRET_1279 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRET_1293 PF00069 Protein kinase domain MRET_1293 PF03793 PASTA domain MRET_1296 PF01704 UTP--glucose-1-phosphate uridylyltransferase MRET_1298 PF00012 Hsp70 protein MRET_1302 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRET_1302 PF00072 Response regulator receiver domain MRET_1302 PF01627 Hpt domain MRET_1302 PF00512 His Kinase A (phospho-acceptor) domain MRET_1302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRET_1302 PF00672 HAMP domain MRET_1309 PF00850 Histone deacetylase domain MRET_1319 PF00885 6,7-dimethyl-8-ribityllumazine synthase MRET_1321 PF00152 tRNA synthetases class II (D, K and N) MRET_1321 PF01336 OB-fold nucleic acid binding domain MRET_1326 PF16177 Acetyl-coenzyme A synthetase N-terminus MRET_1326 PF00501 AMP-binding enzyme MRET_1326 PF13193 AMP-binding enzyme C-terminal domain MRET_1329 PF12848 ABC transporter MRET_1329 PF00005 ABC transporter MRET_1335 PF00069 Protein kinase domain MRET_1335 PF03793 PASTA domain MRET_1340 PF00069 Protein kinase domain MRET_1340 PF03793 PASTA domain MRET_1347 PF00364 Biotin-requiring enzyme MRET_1347 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRET_1347 PF02817 e3 binding domain MRET_1350 PF00069 Protein kinase domain MRET_1350 PF03793 PASTA domain MRET_1357 PF00830 Ribosomal L28 family MRET_1359 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MRET_1359 PF01266 FAD dependent oxidoreductase MRET_1386 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MRET_1395 PF00012 Hsp70 protein MRET_1403 PF00394 Multicopper oxidase MRET_1403 PF07731 Multicopper oxidase MRET_1403 PF07732 Multicopper oxidase MRET_1404 PF07732 Multicopper oxidase MRET_1404 PF07731 Multicopper oxidase MRET_1404 PF00394 Multicopper oxidase MRET_1405 PF05506 Domain of unknown function (DUF756) MRET_1405 PF04185 Phosphoesterase family MRET_1406 PF04185 Phosphoesterase family MRET_1407 PF04185 Phosphoesterase family MRET_1408 PF04185 Phosphoesterase family MRET_1408 PF05506 Domain of unknown function (DUF756) MRET_1409 PF01184 GPR1/FUN34/yaaH family MRET_1428 PF04434 SWIM zinc finger MRET_1428 PF00176 SNF2 family N-terminal domain MRET_1428 PF00271 Helicase conserved C-terminal domain MRET_1431 PF06418 CTP synthase N-terminus MRET_1431 PF00117 Glutamine amidotransferase class-I MRET_1449 PF00152 tRNA synthetases class II (D, K and N) MRET_1449 PF01336 OB-fold nucleic acid binding domain MRET_1455 PF00501 AMP-binding enzyme MRET_1455 PF13193 AMP-binding enzyme C-terminal domain MRET_1458 PF01624 MutS domain I MRET_1458 PF05192 MutS domain III MRET_1458 PF05190 MutS family domain IV MRET_1458 PF00488 MutS domain V MRET_1458 PF05188 MutS domain II MRET_1462 PF00463 Isocitrate lyase family MRET_1467 PF01728 FtsJ-like methyltransferase MRET_1469 PF16198 tRNA pseudouridylate synthase B C-terminal domain MRET_1469 PF01509 TruB family pseudouridylate synthase (N terminal domain) MRET_1470 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 MRET_1475 PF01196 Ribosomal protein L17 MRET_1476 PF00550 Phosphopantetheine attachment site MRET_1479 PF03764 Elongation factor G, domain IV MRET_1479 PF00009 Elongation factor Tu GTP binding domain MRET_1479 PF14492 Elongation Factor G, domain II MRET_1479 PF00679 Elongation factor G C-terminus MRET_1479 PF03144 Elongation factor Tu domain 2 MRET_1482 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MRET_1482 PF00953 Glycosyl transferase family 4 MRET_1484 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family MRET_1487 PF00117 Glutamine amidotransferase class-I MRET_1489 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRET_1489 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRET_1489 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRET_1489 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRET_1497 PF01259 SAICAR synthetase MRET_1502 PF00155 Aminotransferase class I and II MRET_1505 PF04760 Translation initiation factor IF-2, N-terminal region MRET_1505 PF00009 Elongation factor Tu GTP binding domain MRET_1505 PF11987 Translation-initiation factor 2 MRET_1506 PF02142 MGS-like domain MRET_1506 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MRET_1506 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRET_1514 PF00886 Ribosomal protein S16 MRET_1522 PF01174 SNO glutamine amidotransferase family MRET_1527 PF01053 Cys/Met metabolism PLP-dependent enzyme MRET_1532 PF00271 Helicase conserved C-terminal domain MRET_1532 PF04434 SWIM zinc finger MRET_1532 PF00176 SNF2 family N-terminal domain MRET_1538 PF03144 Elongation factor Tu domain 2 MRET_1538 PF03143 Elongation factor Tu C-terminal domain MRET_1538 PF00009 Elongation factor Tu GTP binding domain MRET_1542 PF01680 SOR/SNZ family MRET_1548 PF02112 cAMP phosphodiesterases class-II MRET_1549 PF01645 Conserved region in glutamate synthase MRET_1549 PF01493 GXGXG motif MRET_1549 PF00310 Glutamine amidotransferases class-II MRET_1549 PF04898 Glutamate synthase central domain MRET_1551 PF00709 Adenylosuccinate synthetase MRET_1573 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MRET_1574 PF02824 TGS domain MRET_1574 PF03129 Anticodon binding domain MRET_1574 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_1574 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRET_1577 PF00270 DEAD/DEAH box helicase MRET_1577 PF00271 Helicase conserved C-terminal domain MRET_1580 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRET_1580 PF00004 ATPase family associated with various cellular activities (AAA) MRET_1580 PF05362 Lon protease (S16) C-terminal proteolytic domain MRET_1581 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRET_1585 PF00069 Protein kinase domain MRET_1586 PF02374 Anion-transporting ATPase MRET_1590 PF00271 Helicase conserved C-terminal domain MRET_1590 PF00176 SNF2 family N-terminal domain MRET_1590 PF12419 SNF2 Helicase protein MRET_1592 PF00297 Ribosomal protein L3 MRET_1595 PF00083 Sugar (and other) transporter MRET_1598 PF00083 Sugar (and other) transporter MRET_1602 PF00133 tRNA synthetases class I (I, L, M and V) MRET_1602 PF06827 Zinc finger found in FPG and IleRS MRET_1602 PF08264 Anticodon-binding domain of tRNA MRET_1612 PF03793 PASTA domain MRET_1612 PF00069 Protein kinase domain MRET_1615 PF00664 ABC transporter transmembrane region MRET_1615 PF00005 ABC transporter MRET_1620 PF00766 Electron transfer flavoprotein FAD-binding domain MRET_1620 PF01012 Electron transfer flavoprotein domain MRET_1621 PF02146 Sir2 family MRET_1629 PF05362 Lon protease (S16) C-terminal proteolytic domain MRET_1629 PF00004 ATPase family associated with various cellular activities (AAA) MRET_1629 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRET_1631 PF00270 DEAD/DEAH box helicase MRET_1631 PF00271 Helicase conserved C-terminal domain MRET_1636 PF00069 Protein kinase domain MRET_1636 PF14032 PknH-like extracellular domain MRET_1645 PF00004 ATPase family associated with various cellular activities (AAA) MRET_1655 PF00069 Protein kinase domain MRET_1655 PF03793 PASTA domain MRET_1656 PF00579 tRNA synthetases class I (W and Y) MRET_1656 PF01479 S4 domain MRET_1675 PF02096 60Kd inner membrane protein MRET_1675 PF14849 YidC periplasmic domain MRET_1689 PF00689 Cation transporting ATPase, C-terminus MRET_1698 PF00013 KH domain MRET_1698 PF00575 S1 RNA binding domain MRET_1698 PF01138 3' exoribonuclease family, domain 1 MRET_1698 PF03725 3' exoribonuclease family, domain 2 MRET_1698 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MRET_1699 PF00118 TCP-1/cpn60 chaperonin family MRET_1700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRET_1705 PF02774 Semialdehyde dehydrogenase, dimerisation domain MRET_1705 PF01118 Semialdehyde dehydrogenase, NAD binding domain MRET_1706 PF00920 Dehydratase family MRET_1707 PF02666 Phosphatidylserine decarboxylase MRET_1731 PF07724 AAA domain (Cdc48 subfamily) MRET_1731 PF02861 Clp amino terminal domain, pathogenicity island component MRET_1731 PF10431 C-terminal, D2-small domain, of ClpB protein MRET_1731 PF00004 ATPase family associated with various cellular activities (AAA) MRET_1731 PF17871 AAA lid domain MRET_1739 PF00684 DnaJ central domain MRET_1739 PF01556 DnaJ C terminal domain MRET_1739 PF00226 DnaJ domain MRET_1763 PF00270 DEAD/DEAH box helicase MRET_1763 PF00271 Helicase conserved C-terminal domain MRET_1763 PF00570 HRDC domain MRET_1763 PF16124 RecQ zinc-binding MRET_1763 PF09382 RQC domain MRET_1765 PF00814 Glycoprotease family MRET_1766 PF03129 Anticodon binding domain MRET_1766 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_1783 PF03793 PASTA domain MRET_1783 PF00069 Protein kinase domain MRET_1802 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_1802 PF00271 Helicase conserved C-terminal domain MRET_1802 PF11898 Domain of unknown function (DUF3418) MRET_1802 PF00270 DEAD/DEAH box helicase MRET_1802 PF04408 Helicase associated domain (HA2) MRET_1809 PF03949 Malic enzyme, NAD binding domain MRET_1809 PF00390 Malic enzyme, N-terminal domain MRET_1811 PF09369 Domain of unknown function (DUF1998) MRET_1811 PF00271 Helicase conserved C-terminal domain MRET_1811 PF00270 DEAD/DEAH box helicase MRET_1816 PF00762 Ferrochelatase MRET_1823 PF08245 Mur ligase middle domain MRET_1823 PF02875 Mur ligase family, glutamate ligase domain MRET_1839 PF16198 tRNA pseudouridylate synthase B C-terminal domain MRET_1839 PF01509 TruB family pseudouridylate synthase (N terminal domain) MRET_1840 PF02911 Formyl transferase, C-terminal domain MRET_1840 PF00551 Formyl transferase MRET_1842 PF00756 Putative esterase MRET_1843 PF00226 DnaJ domain MRET_1843 PF01556 DnaJ C terminal domain MRET_1843 PF00684 DnaJ central domain MRET_1846 PF00459 Inositol monophosphatase family MRET_1854 PF07714 Protein tyrosine kinase MRET_1855 PF01370 NAD dependent epimerase/dehydratase family MRET_1861 PF01212 Beta-eliminating lyase MRET_1865 PF02390 Putative methyltransferase MRET_1869 PF03793 PASTA domain MRET_1869 PF00069 Protein kinase domain MRET_1879 PF00107 Zinc-binding dehydrogenase MRET_1879 PF08240 Alcohol dehydrogenase GroES-like domain MRET_1882 PF00575 S1 RNA binding domain MRET_1882 PF17876 Cold shock domain MRET_1882 PF00773 RNB domain MRET_1882 PF08206 Ribonuclease B OB domain MRET_1882 PF08461 Ribonuclease R winged-helix domain MRET_1883 PF00270 DEAD/DEAH box helicase MRET_1883 PF00271 Helicase conserved C-terminal domain MRET_1885 PF01063 Amino-transferase class IV MRET_1889 PF00005 ABC transporter MRET_1889 PF00664 ABC transporter transmembrane region MRET_1890 PF05188 MutS domain II MRET_1890 PF01624 MutS domain I MRET_1890 PF00488 MutS domain V MRET_1890 PF05190 MutS family domain IV MRET_1890 PF05192 MutS domain III MRET_1892 PF00005 ABC transporter MRET_1892 PF00664 ABC transporter transmembrane region MRET_1899 PF01409 tRNA synthetases class II core domain (F) MRET_1899 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MRET_1900 PF12146 Serine aminopeptidase, S33 MRET_1903 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MRET_1903 PF00925 GTP cyclohydrolase II MRET_1915 PF00300 Histidine phosphatase superfamily (branch 1) MRET_1945 PF00271 Helicase conserved C-terminal domain MRET_1945 PF00270 DEAD/DEAH box helicase MRET_1955 PF00485 Phosphoribulokinase / Uridine kinase family MRET_1956 PF00149 Calcineurin-like phosphoesterase MRET_1957 PF00005 ABC transporter MRET_1968 PF00764 Arginosuccinate synthase MRET_1970 PF00982 Glycosyltransferase family 20 MRET_1974 PF02540 NAD synthase MRET_1982 PF01243 Pyridoxamine 5'-phosphate oxidase MRET_1982 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MRET_1995 PF01255 Putative undecaprenyl diphosphate synthase MRET_1997 PF03364 Polyketide cyclase / dehydrase and lipid transport MRET_2000 PF00484 Carbonic anhydrase MRET_2005 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MRET_2005 PF00326 Prolyl oligopeptidase family MRET_2006 PF01926 50S ribosome-binding GTPase MRET_2006 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MRET_2020 PF12697 Alpha/beta hydrolase family MRET_2037 PF00085 Thioredoxin MRET_2038 PF00743 Flavin-binding monooxygenase-like MRET_2042 PF00206 Lyase MRET_2042 PF10415 Fumarase C C-terminus MRET_2050 PF00586 AIR synthase related protein, N-terminal domain MRET_2050 PF02769 AIR synthase related protein, C-terminal domain MRET_2051 PF00083 Sugar (and other) transporter MRET_2054 PF00687 Ribosomal protein L1p/L10e family MRET_2058 PF00156 Phosphoribosyl transferase domain MRET_2062 PF00005 ABC transporter MRET_2062 PF00664 ABC transporter transmembrane region MRET_2073 PF01256 Carbohydrate kinase MRET_2083 PF00141 Peroxidase MRET_2087 PF00237 Ribosomal protein L22p/L17e MRET_2088 PF00171 Aldehyde dehydrogenase family MRET_2089 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRET_2093 PF00266 Aminotransferase class-V MRET_2096 PF10609 NUBPL iron-transfer P-loop NTPase MRET_2096 PF01883 Iron-sulfur cluster assembly protein MRET_2097 PF00890 FAD binding domain MRET_2097 PF02910 Fumarate reductase flavoprotein C-term MRET_2104 PF00069 Protein kinase domain MRET_2104 PF03793 PASTA domain MRET_2106 PF03947 Ribosomal Proteins L2, C-terminal domain MRET_2106 PF00181 Ribosomal Proteins L2, RNA binding domain MRET_2108 PF00271 Helicase conserved C-terminal domain MRET_2108 PF00176 SNF2 family N-terminal domain MRET_2108 PF04434 SWIM zinc finger MRET_2116 PF00083 Sugar (and other) transporter MRET_2118 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MRET_2124 PF02770 Acyl-CoA dehydrogenase, middle domain MRET_2124 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRET_2124 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRET_2126 PF09269 Domain of unknown function (DUF1967) MRET_2126 PF01926 50S ribosome-binding GTPase MRET_2126 PF01018 GTP1/OBG MRET_2128 PF00226 DnaJ domain MRET_2128 PF01556 DnaJ C terminal domain MRET_2128 PF00684 DnaJ central domain MRET_2131 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MRET_2135 PF00410 Ribosomal protein S8 MRET_2144 PF13419 Haloacid dehalogenase-like hydrolase MRET_2150 PF00069 Protein kinase domain MRET_2150 PF03793 PASTA domain MRET_2163 PF00270 DEAD/DEAH box helicase MRET_2163 PF00271 Helicase conserved C-terminal domain MRET_2174 PF00270 DEAD/DEAH box helicase MRET_2174 PF00271 Helicase conserved C-terminal domain MRET_2176 PF00814 Glycoprotease family MRET_2180 PF01040 UbiA prenyltransferase family MRET_2184 PF00457 Glycosyl hydrolases family 11 MRET_2184 PF01522 Polysaccharide deacetylase MRET_2186 PF01431 Peptidase family M13 MRET_2186 PF05649 Peptidase family M13 MRET_2187 PF01431 Peptidase family M13 MRET_2187 PF05649 Peptidase family M13 MRET_2195 PF00571 CBS domain MRET_2195 PF00291 Pyridoxal-phosphate dependent enzyme MRET_2205 PF01144 Coenzyme A transferase MRET_2209 PF00238 Ribosomal protein L14p/L23e MRET_2212 PF00004 ATPase family associated with various cellular activities (AAA) MRET_2212 PF17862 AAA+ lid domain MRET_2212 PF06480 FtsH Extracellular MRET_2212 PF01434 Peptidase family M41 MRET_2214 PF00664 ABC transporter transmembrane region MRET_2214 PF00005 ABC transporter MRET_2215 PF00330 Aconitase family (aconitate hydratase) MRET_2230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRET_2230 PF00205 Thiamine pyrophosphate enzyme, central domain MRET_2230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRET_2236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRET_2236 PF01751 Toprim domain MRET_2236 PF00986 DNA gyrase B subunit, carboxyl terminus MRET_2236 PF00204 DNA gyrase B MRET_2243 PF01588 Putative tRNA binding domain MRET_2243 PF09334 tRNA synthetases class I (M) MRET_2245 PF00027 Cyclic nucleotide-binding domain MRET_2245 PF01734 Patatin-like phospholipase MRET_2246 PF00120 Glutamine synthetase, catalytic domain MRET_2246 PF03951 Glutamine synthetase, beta-Grasp domain MRET_2253 PF07690 Major Facilitator Superfamily MRET_2258 PF00069 Protein kinase domain MRET_2258 PF03793 PASTA domain MRET_2260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MRET_2260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MRET_2267 PF00004 ATPase family associated with various cellular activities (AAA) MRET_2267 PF01434 Peptidase family M41 MRET_2267 PF06480 FtsH Extracellular MRET_2267 PF17862 AAA+ lid domain MRET_2273 PF00750 tRNA synthetases class I (R) MRET_2273 PF05746 DALR anticodon binding domain MRET_2273 PF03485 Arginyl tRNA synthetase N terminal domain MRET_2274 PF01926 50S ribosome-binding GTPase MRET_2282 PF00297 Ribosomal protein L3 MRET_2289 PF00293 NUDIX domain MRET_2294 PF02463 RecF/RecN/SMC N terminal domain MRET_2294 PF06470 SMC proteins Flexible Hinge Domain MRET_2304 PF00654 Voltage gated chloride channel MRET_2309 PF00005 ABC transporter MRET_2309 PF06472 ABC transporter transmembrane region 2 MRET_2311 PF01202 Shikimate kinase MRET_2319 PF00069 Protein kinase domain MRET_2329 PF00005 ABC transporter MRET_2329 PF01061 ABC-2 type transporter MRET_2329 PF00498 FHA domain MRET_2330 PF00005 ABC transporter MRET_2330 PF00498 FHA domain MRET_2330 PF01061 ABC-2 type transporter MRET_2338 PF00342 Phosphoglucose isomerase MRET_2344 PF10609 NUBPL iron-transfer P-loop NTPase MRET_2352 PF02540 NAD synthase MRET_2352 PF00117 Glutamine amidotransferase class-I MRET_2352 PF00958 GMP synthase C terminal domain MRET_2354 PF01053 Cys/Met metabolism PLP-dependent enzyme MRET_2358 PF14824 Sirohaem biosynthesis protein central MRET_2358 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRET_2358 PF10414 Sirohaem synthase dimerisation region MRET_2361 PF00860 Permease family MRET_2365 PF05506 Domain of unknown function (DUF756) MRET_2365 PF04185 Phosphoesterase family MRET_2366 PF00248 Aldo/keto reductase family MRET_2374 PF00733 Asparagine synthase MRET_2374 PF13537 Glutamine amidotransferase domain MRET_2377 PF00106 short chain dehydrogenase MRET_2379 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MRET_2379 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRET_2387 PF03143 Elongation factor Tu C-terminal domain MRET_2387 PF03144 Elongation factor Tu domain 2 MRET_2387 PF00009 Elongation factor Tu GTP binding domain MRET_2390 PF00561 alpha/beta hydrolase fold MRET_2394 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MRET_2394 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MRET_2395 PF00330 Aconitase family (aconitate hydratase) MRET_2401 PF02887 Pyruvate kinase, alpha/beta domain MRET_2401 PF00224 Pyruvate kinase, barrel domain MRET_2401 PF00391 PEP-utilising enzyme, mobile domain MRET_2403 PF08241 Methyltransferase domain MRET_2407 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_2407 PF03129 Anticodon binding domain MRET_2407 PF02824 TGS domain MRET_2407 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRET_2417 PF00012 Hsp70 protein MRET_2418 PF00689 Cation transporting ATPase, C-terminus MRET_2418 PF00690 Cation transporter/ATPase, N-terminus MRET_2421 PF03435 Saccharopine dehydrogenase NADP binding domain MRET_2422 PF00118 TCP-1/cpn60 chaperonin family MRET_2424 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRET_2424 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRET_2430 PF00689 Cation transporting ATPase, C-terminus MRET_2430 PF00690 Cation transporter/ATPase, N-terminus MRET_2434 PF06470 SMC proteins Flexible Hinge Domain MRET_2434 PF02463 RecF/RecN/SMC N terminal domain MRET_2441 PF03060 Nitronate monooxygenase MRET_2447 PF00069 Protein kinase domain MRET_2447 PF03793 PASTA domain MRET_2448 PF00082 Subtilase family MRET_2448 PF05922 Peptidase inhibitor I9 MRET_2449 PF00152 tRNA synthetases class II (D, K and N) MRET_2449 PF01336 OB-fold nucleic acid binding domain MRET_2455 PF01926 50S ribosome-binding GTPase MRET_2457 PF01479 S4 domain MRET_2457 PF00849 RNA pseudouridylate synthase MRET_2461 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRET_2463 PF00155 Aminotransferase class I and II MRET_2471 PF00150 Cellulase (glycosyl hydrolase family 5) MRET_2473 PF01169 Uncharacterized protein family UPF0016 MRET_2477 PF00318 Ribosomal protein S2 MRET_2479 PF00664 ABC transporter transmembrane region MRET_2479 PF00005 ABC transporter MRET_2483 PF01070 FMN-dependent dehydrogenase MRET_2492 PF02548 Ketopantoate hydroxymethyltransferase MRET_2493 PF00005 ABC transporter MRET_2494 PF16338 Domain of unknown function (DUF4968) MRET_2494 PF17137 Domain of unknown function (DUF5110) MRET_2494 PF13802 Galactose mutarotase-like MRET_2494 PF01055 Glycosyl hydrolases family 31 MRET_2501 PF13932 GidA associated domain MRET_2501 PF01134 Glucose inhibited division protein A MRET_2506 PF00348 Polyprenyl synthetase MRET_2507 PF00795 Carbon-nitrogen hydrolase MRET_2511 PF00463 Isocitrate lyase family MRET_2516 PF00121 Triosephosphate isomerase MRET_2519 PF01808 AICARFT/IMPCHase bienzyme MRET_2519 PF02142 MGS-like domain MRET_2521 PF05971 RNA methyltransferase MRET_2522 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MRET_2522 PF04055 Radical SAM superfamily MRET_2524 PF00107 Zinc-binding dehydrogenase MRET_2524 PF08240 Alcohol dehydrogenase GroES-like domain MRET_2528 PF01204 Trehalase MRET_2530 PF10369 Small subunit of acetolactate synthase MRET_2539 PF00696 Amino acid kinase family MRET_2539 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase MRET_2544 PF14493 Helix-turn-helix domain MRET_2544 PF05970 PIF1-like helicase MRET_2549 PF01434 Peptidase family M41 MRET_2549 PF06480 FtsH Extracellular MRET_2549 PF17862 AAA+ lid domain MRET_2549 PF00004 ATPase family associated with various cellular activities (AAA) MRET_2551 PF01207 Dihydrouridine synthase (Dus) MRET_2555 PF00117 Glutamine amidotransferase class-I MRET_2555 PF00425 chorismate binding enzyme MRET_2555 PF04715 Anthranilate synthase component I, N terminal region MRET_2558 PF10417 C-terminal domain of 1-Cys peroxiredoxin MRET_2558 PF00578 AhpC/TSA family MRET_2559 PF00106 short chain dehydrogenase MRET_2562 PF01595 Cyclin M transmembrane N-terminal domain MRET_2562 PF00571 CBS domain MRET_2563 PF01926 50S ribosome-binding GTPase MRET_2563 PF01018 GTP1/OBG MRET_2563 PF09269 Domain of unknown function (DUF1967) MRET_2564 PF01171 PP-loop family MRET_2567 PF01545 Cation efflux family MRET_2567 PF16916 Dimerisation domain of Zinc Transporter MRET_2568 PF00180 Isocitrate/isopropylmalate dehydrogenase MRET_2571 PF07690 Major Facilitator Superfamily MRET_2573 PF02127 Aminopeptidase I zinc metalloprotease (M18) MRET_2584 PF04560 RNA polymerase Rpb2, domain 7 MRET_2584 PF00562 RNA polymerase Rpb2, domain 6 MRET_2584 PF10385 RNA polymerase beta subunit external 1 domain MRET_2584 PF04563 RNA polymerase beta subunit MRET_2584 PF04565 RNA polymerase Rpb2, domain 3 MRET_2584 PF04561 RNA polymerase Rpb2, domain 2 MRET_2587 PF09334 tRNA synthetases class I (M) MRET_2587 PF01588 Putative tRNA binding domain MRET_2589 PF08669 Glycine cleavage T-protein C-terminal barrel domain MRET_2589 PF01571 Aminomethyltransferase folate-binding domain MRET_2590 PF00664 ABC transporter transmembrane region MRET_2590 PF00005 ABC transporter MRET_2592 PF00573 Ribosomal protein L4/L1 family MRET_2593 PF00380 Ribosomal protein S9/S16 MRET_2600 PF01433 Peptidase family M1 domain MRET_2600 PF11838 ERAP1-like C-terminal domain MRET_2603 PF00155 Aminotransferase class I and II MRET_2613 PF00069 Protein kinase domain MRET_2613 PF03793 PASTA domain MRET_2618 PF14815 NUDIX domain MRET_2618 PF00730 HhH-GPD superfamily base excision DNA repair protein MRET_2618 PF00633 Helix-hairpin-helix motif MRET_2627 PF13520 Amino acid permease MRET_2628 PF11898 Domain of unknown function (DUF3418) MRET_2628 PF04408 Helicase associated domain (HA2) MRET_2628 PF00271 Helicase conserved C-terminal domain MRET_2628 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_2628 PF00270 DEAD/DEAH box helicase MRET_2634 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MRET_2638 PF00155 Aminotransferase class I and II MRET_2643 PF01138 3' exoribonuclease family, domain 1 MRET_2643 PF00575 S1 RNA binding domain MRET_2643 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MRET_2643 PF03725 3' exoribonuclease family, domain 2 MRET_2643 PF00013 KH domain MRET_2647 PF00270 DEAD/DEAH box helicase MRET_2647 PF08148 DSHCT (NUC185) domain MRET_2647 PF00271 Helicase conserved C-terminal domain MRET_2655 PF01416 tRNA pseudouridine synthase MRET_2662 PF04616 Glycosyl hydrolases family 43 MRET_2662 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain MRET_2669 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MRET_2669 PF02222 ATP-grasp domain MRET_2670 PF05199 GMC oxidoreductase MRET_2670 PF00732 GMC oxidoreductase MRET_2687 PF00083 Sugar (and other) transporter MRET_2688 PF00111 2Fe-2S iron-sulfur cluster binding domain MRET_2689 PF00270 DEAD/DEAH box helicase MRET_2689 PF00271 Helicase conserved C-terminal domain MRET_2689 PF03880 DbpA RNA binding domain MRET_2693 PF03129 Anticodon binding domain MRET_2693 PF09180 Prolyl-tRNA synthetase, C-terminal MRET_2693 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_2694 PF02403 Seryl-tRNA synthetase N-terminal domain MRET_2694 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_2695 PF00226 DnaJ domain MRET_2695 PF00684 DnaJ central domain MRET_2695 PF01556 DnaJ C terminal domain MRET_2703 PF00069 Protein kinase domain MRET_2703 PF13360 PQQ-like domain MRET_2706 PF05193 Peptidase M16 inactive domain MRET_2706 PF00675 Insulinase (Peptidase family M16) MRET_2713 PF00324 Amino acid permease MRET_2727 PF00282 Pyridoxal-dependent decarboxylase conserved domain MRET_2729 PF12002 MgsA AAA+ ATPase C terminal MRET_2729 PF16193 AAA C-terminal domain MRET_2729 PF00004 ATPase family associated with various cellular activities (AAA) MRET_2730 PF00679 Elongation factor G C-terminus MRET_2730 PF06421 GTP-binding protein LepA C-terminus MRET_2730 PF03144 Elongation factor Tu domain 2 MRET_2730 PF00009 Elongation factor Tu GTP binding domain MRET_2730 PF14492 Elongation Factor G, domain II MRET_2734 PF16124 RecQ zinc-binding MRET_2734 PF00270 DEAD/DEAH box helicase MRET_2734 PF00570 HRDC domain MRET_2734 PF09382 RQC domain MRET_2734 PF00271 Helicase conserved C-terminal domain MRET_2758 PF00118 TCP-1/cpn60 chaperonin family MRET_2760 PF03737 Aldolase/RraA MRET_2764 PF00561 alpha/beta hydrolase fold MRET_2765 PF03129 Anticodon binding domain MRET_2765 PF13393 Histidyl-tRNA synthetase MRET_2767 PF01042 Endoribonuclease L-PSP MRET_2774 PF00781 Diacylglycerol kinase catalytic domain MRET_2775 PF00085 Thioredoxin MRET_2777 PF00449 Urease alpha-subunit, N-terminal domain MRET_2777 PF01979 Amidohydrolase family MRET_2781 PF00271 Helicase conserved C-terminal domain MRET_2781 PF00270 DEAD/DEAH box helicase MRET_2793 PF00150 Cellulase (glycosyl hydrolase family 5) MRET_2800 PF04998 RNA polymerase Rpb1, domain 5 MRET_2800 PF05000 RNA polymerase Rpb1, domain 4 MRET_2800 PF04983 RNA polymerase Rpb1, domain 3 MRET_2800 PF00623 RNA polymerase Rpb1, domain 2 MRET_2800 PF04997 RNA polymerase Rpb1, domain 1 MRET_2800 PF04998 RNA polymerase Rpb1, domain 5 MRET_2800 PF05000 RNA polymerase Rpb1, domain 4 MRET_2800 PF04983 RNA polymerase Rpb1, domain 3 MRET_2800 PF00623 RNA polymerase Rpb1, domain 2 MRET_2800 PF04997 RNA polymerase Rpb1, domain 1 MRET_2801 PF00899 ThiF family MRET_2802 PF00300 Histidine phosphatase superfamily (branch 1) MRET_2806 PF00581 Rhodanese-like domain MRET_2810 PF01661 Macro domain MRET_2818 PF08386 TAP-like protein MRET_2818 PF00561 alpha/beta hydrolase fold MRET_2831 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MRET_2831 PF18262 Phe-tRNA synthetase beta subunit B1 domain MRET_2831 PF03484 tRNA synthetase B5 domain MRET_2846 PF03793 PASTA domain MRET_2846 PF00069 Protein kinase domain MRET_2853 PF02347 Glycine cleavage system P-protein MRET_2857 PF03793 PASTA domain MRET_2857 PF00069 Protein kinase domain MRET_2871 PF07690 Major Facilitator Superfamily MRET_2873 PF00270 DEAD/DEAH box helicase MRET_2873 PF00271 Helicase conserved C-terminal domain MRET_2880 PF00164 Ribosomal protein S12/S23 MRET_2884 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRET_2891 PF00324 Amino acid permease MRET_2892 PF00324 Amino acid permease MRET_2893 PF00324 Amino acid permease MRET_2894 PF00324 Amino acid permease MRET_2896 PF11798 IMS family HHH motif MRET_2896 PF11799 impB/mucB/samB family C-terminal domain MRET_2896 PF00817 impB/mucB/samB family MRET_2897 PF01218 Coproporphyrinogen III oxidase MRET_2899 PF00069 Protein kinase domain MRET_2902 PF00348 Polyprenyl synthetase MRET_2903 PF01195 Peptidyl-tRNA hydrolase MRET_2912 PF03315 Serine dehydratase beta chain MRET_2912 PF03313 Serine dehydratase alpha chain MRET_2914 PF00106 short chain dehydrogenase MRET_2920 PF01728 FtsJ-like methyltransferase MRET_2930 PF07859 alpha/beta hydrolase fold MRET_2941 PF00271 Helicase conserved C-terminal domain MRET_2941 PF00270 DEAD/DEAH box helicase MRET_2941 PF04408 Helicase associated domain (HA2) MRET_2941 PF11898 Domain of unknown function (DUF3418) MRET_2941 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_2946 PF03793 PASTA domain MRET_2946 PF00069 Protein kinase domain MRET_2956 PF02779 Transketolase, pyrimidine binding domain MRET_2956 PF00676 Dehydrogenase E1 component MRET_2956 PF16078 2-oxoglutarate dehydrogenase N-terminus MRET_2956 PF16870 2-oxoglutarate dehydrogenase C-terminal MRET_2964 PF00690 Cation transporter/ATPase, N-terminus MRET_2964 PF00689 Cation transporting ATPase, C-terminus MRET_2968 PF02545 Maf-like protein MRET_2970 PF01842 ACT domain MRET_2970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRET_2970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRET_2975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRET_2986 PF00069 Protein kinase domain MRET_2988 PF02801 Beta-ketoacyl synthase, C-terminal domain MRET_2988 PF08659 KR domain MRET_2988 PF00550 Phosphopantetheine attachment site MRET_2988 PF14765 Polyketide synthase dehydratase MRET_2988 PF08240 Alcohol dehydrogenase GroES-like domain MRET_2988 PF00109 Beta-ketoacyl synthase, N-terminal domain MRET_2988 PF00698 Acyl transferase domain MRET_2988 PF16197 Ketoacyl-synthetase C-terminal extension MRET_2989 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRET_2989 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRET_2989 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRET_2989 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRET_2993 PF01012 Electron transfer flavoprotein domain MRET_2996 PF02885 Glycosyl transferase family, helical bundle domain MRET_2996 PF00591 Glycosyl transferase family, a/b domain MRET_2998 PF00005 ABC transporter MRET_2998 PF00664 ABC transporter transmembrane region MRET_2999 PF00551 Formyl transferase MRET_3000 PF00350 Dynamin family MRET_3007 PF00330 Aconitase family (aconitate hydratase) MRET_3023 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRET_3023 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRET_3032 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MRET_3032 PF03900 Porphobilinogen deaminase, C-terminal domain MRET_3036 PF01975 Survival protein SurE MRET_3044 PF00312 Ribosomal protein S15 MRET_3048 PF00704 Glycosyl hydrolases family 18 MRET_3048 PF00041 Fibronectin type III domain MRET_3063 PF00682 HMGL-like MRET_3063 PF08502 LeuA allosteric (dimerisation) domain MRET_3069 PF02230 Phospholipase/Carboxylesterase MRET_3073 PF00347 Ribosomal protein L6 MRET_3075 PF01513 ATP-NAD kinase MRET_3088 PF04185 Phosphoesterase family MRET_3088 PF05506 Domain of unknown function (DUF756) MRET_3090 PF00004 ATPase family associated with various cellular activities (AAA) MRET_3090 PF17862 AAA+ lid domain MRET_3090 PF06480 FtsH Extracellular MRET_3090 PF01434 Peptidase family M41 MRET_3091 PF03807 NADP oxidoreductase coenzyme F420-dependent MRET_3091 PF14748 Pyrroline-5-carboxylate reductase dimerisation MRET_3100 PF01774 UreD urease accessory protein MRET_3107 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MRET_3107 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MRET_3107 PF01189 16S rRNA methyltransferase RsmB/F MRET_3119 PF06968 Biotin and Thiamin Synthesis associated domain MRET_3119 PF04055 Radical SAM superfamily MRET_3129 PF01566 Natural resistance-associated macrophage protein MRET_3131 PF08240 Alcohol dehydrogenase GroES-like domain MRET_3131 PF00698 Acyl transferase domain MRET_3131 PF16197 Ketoacyl-synthetase C-terminal extension MRET_3131 PF00109 Beta-ketoacyl synthase, N-terminal domain MRET_3131 PF02801 Beta-ketoacyl synthase, C-terminal domain MRET_3131 PF08659 KR domain MRET_3131 PF00550 Phosphopantetheine attachment site MRET_3131 PF14765 Polyketide synthase dehydratase MRET_3131 PF00107 Zinc-binding dehydrogenase MRET_3134 PF07743 HSCB C-terminal oligomerisation domain MRET_3144 PF00226 DnaJ domain MRET_3144 PF01556 DnaJ C terminal domain MRET_3144 PF00684 DnaJ central domain MRET_3145 PF01416 tRNA pseudouridine synthase MRET_3150 PF00176 SNF2 family N-terminal domain MRET_3150 PF00271 Helicase conserved C-terminal domain MRET_3150 PF04434 SWIM zinc finger MRET_3154 PF02569 Pantoate-beta-alanine ligase MRET_3157 PF00258 Flavodoxin MRET_3157 PF00175 Oxidoreductase NAD-binding domain MRET_3157 PF00667 FAD binding domain MRET_3173 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRET_3173 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRET_3177 PF01784 NIF3 (NGG1p interacting factor 3) MRET_3178 PF04560 RNA polymerase Rpb2, domain 7 MRET_3178 PF00562 RNA polymerase Rpb2, domain 6 MRET_3178 PF10385 RNA polymerase beta subunit external 1 domain MRET_3178 PF04565 RNA polymerase Rpb2, domain 3 MRET_3178 PF04561 RNA polymerase Rpb2, domain 2 MRET_3178 PF04563 RNA polymerase beta subunit MRET_3183 PF11987 Translation-initiation factor 2 MRET_3183 PF08364 Bacterial translation initiation factor IF-2 associated region MRET_3183 PF00009 Elongation factor Tu GTP binding domain MRET_3183 PF03144 Elongation factor Tu domain 2 MRET_3183 PF04760 Translation initiation factor IF-2, N-terminal region MRET_3189 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MRET_3189 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MRET_3196 PF00069 Protein kinase domain MRET_3196 PF03793 PASTA domain MRET_3200 PF00069 Protein kinase domain MRET_3200 PF03793 PASTA domain MRET_3212 PF00069 Protein kinase domain MRET_3212 PF03793 PASTA domain MRET_3229 PF01593 Flavin containing amine oxidoreductase MRET_3233 PF00067 Cytochrome P450 MRET_3234 PF01842 ACT domain MRET_3234 PF03447 Homoserine dehydrogenase, NAD binding domain MRET_3234 PF00742 Homoserine dehydrogenase MRET_3234 PF13840 ACT domain MRET_3234 PF00696 Amino acid kinase family MRET_3236 PF00227 Proteasome subunit MRET_3238 PF01222 Ergosterol biosynthesis ERG4/ERG24 family MRET_3239 PF16320 Ribosomal protein L7/L12 dimerisation domain MRET_3239 PF00542 Ribosomal protein L7/L12 C-terminal domain MRET_3241 PF00403 Heavy-metal-associated domain MRET_3245 PF02978 Signal peptide binding domain MRET_3245 PF00448 SRP54-type protein, GTPase domain MRET_3245 PF02881 SRP54-type protein, helical bundle domain MRET_3261 PF01425 Amidase MRET_3267 PF01546 Peptidase family M20/M25/M40 MRET_3272 PF00580 UvrD/REP helicase N-terminal domain MRET_3272 PF13361 UvrD-like helicase C-terminal domain MRET_3278 PF00106 short chain dehydrogenase MRET_3280 PF01040 UbiA prenyltransferase family MRET_3302 PF00271 Helicase conserved C-terminal domain MRET_3302 PF00270 DEAD/DEAH box helicase MRET_3306 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRET_3309 PF01743 Poly A polymerase head domain MRET_3309 PF12627 Probable RNA and SrmB- binding site of polymerase A MRET_3309 PF13735 tRNA nucleotidyltransferase domain 2 putative MRET_3310 PF00069 Protein kinase domain MRET_3316 PF14492 Elongation Factor G, domain II MRET_3316 PF00679 Elongation factor G C-terminus MRET_3316 PF03764 Elongation factor G, domain IV MRET_3316 PF03144 Elongation factor Tu domain 2 MRET_3316 PF00009 Elongation factor Tu GTP binding domain MRET_3318 PF01066 CDP-alcohol phosphatidyltransferase MRET_3321 PF02913 FAD linked oxidases, C-terminal domain MRET_3321 PF01565 FAD binding domain MRET_3327 PF00252 Ribosomal protein L16p/L10e MRET_3329 PF00156 Phosphoribosyl transferase domain MRET_3334 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MRET_3334 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MRET_3340 PF00270 DEAD/DEAH box helicase MRET_3340 PF00271 Helicase conserved C-terminal domain MRET_3342 PF00202 Aminotransferase class-III MRET_3345 PF00156 Phosphoribosyl transferase domain MRET_3356 PF04185 Phosphoesterase family MRET_3380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MRET_3380 PF03725 3' exoribonuclease family, domain 2 MRET_3380 PF00575 S1 RNA binding domain MRET_3380 PF01138 3' exoribonuclease family, domain 1 MRET_3380 PF00013 KH domain MRET_3382 PF12848 ABC transporter MRET_3382 PF00005 ABC transporter MRET_3383 PF00005 ABC transporter MRET_3383 PF12848 ABC transporter MRET_3385 PF01070 FMN-dependent dehydrogenase MRET_3386 PF12848 ABC transporter MRET_3386 PF00005 ABC transporter MRET_3388 PF01070 FMN-dependent dehydrogenase MRET_3410 PF00999 Sodium/hydrogen exchanger family MRET_3411 PF00561 alpha/beta hydrolase fold MRET_3426 PF01979 Amidohydrolase family MRET_3431 PF00069 Protein kinase domain MRET_3431 PF03793 PASTA domain MRET_3434 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal MRET_3434 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal MRET_3436 PF00004 ATPase family associated with various cellular activities (AAA) MRET_3436 PF01434 Peptidase family M41 MRET_3436 PF17862 AAA+ lid domain MRET_3437 PF01494 FAD binding domain MRET_3443 PF00982 Glycosyltransferase family 20 MRET_3445 PF00069 Protein kinase domain MRET_3445 PF03793 PASTA domain MRET_3448 PF00012 Hsp70 protein MRET_3449 PF00625 Guanylate kinase MRET_3458 PF00829 Ribosomal prokaryotic L21 protein MRET_3471 PF01207 Dihydrouridine synthase (Dus) MRET_3473 PF08241 Methyltransferase domain MRET_3475 PF01180 Dihydroorotate dehydrogenase MRET_3477 PF02463 RecF/RecN/SMC N terminal domain MRET_3477 PF06470 SMC proteins Flexible Hinge Domain MRET_3483 PF00248 Aldo/keto reductase family MRET_3484 PF00248 Aldo/keto reductase family MRET_3485 PF00248 Aldo/keto reductase family MRET_3487 PF03129 Anticodon binding domain MRET_3487 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRET_3500 PF00793 DAHP synthetase I family MRET_3502 PF01268 Formate--tetrahydrofolate ligase MRET_3519 PF00069 Protein kinase domain MRET_3520 PF00488 MutS domain V MRET_3520 PF01624 MutS domain I MRET_3520 PF05188 MutS domain II MRET_3520 PF05192 MutS domain III MRET_3520 PF05190 MutS family domain IV MRET_3525 PF00202 Aminotransferase class-III MRET_3528 PF00579 tRNA synthetases class I (W and Y) MRET_3537 PF00282 Pyridoxal-dependent decarboxylase conserved domain MRET_3538 PF03793 PASTA domain MRET_3538 PF00069 Protein kinase domain MRET_3545 PF00338 Ribosomal protein S10p/S20e MRET_3549 PF00535 Glycosyl transferase family 2 MRET_3552 PF14572 Phosphoribosyl synthetase-associated domain MRET_3552 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MRET_3554 PF01367 5'-3' exonuclease, C-terminal SAM fold MRET_3554 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MRET_3557 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRET_3557 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRET_3557 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRET_3565 PF00281 Ribosomal protein L5 MRET_3565 PF00673 ribosomal L5P family C-terminus MRET_3578 PF00085 Thioredoxin MRET_3580 PF05175 Methyltransferase small domain MRET_3599 PF00970 Oxidoreductase FAD-binding domain MRET_3599 PF00042 Globin MRET_3599 PF00175 Oxidoreductase NAD-binding domain MRET_3600 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRET_3601 PF04998 RNA polymerase Rpb1, domain 5 MRET_3601 PF04997 RNA polymerase Rpb1, domain 1 MRET_3601 PF00623 RNA polymerase Rpb1, domain 2 MRET_3601 PF04983 RNA polymerase Rpb1, domain 3 MRET_3601 PF05000 RNA polymerase Rpb1, domain 4 MRET_3603 PF00899 ThiF family MRET_3610 PF00180 Isocitrate/isopropylmalate dehydrogenase MRET_3612 PF00009 Elongation factor Tu GTP binding domain MRET_3617 PF01553 Acyltransferase MRET_3622 PF10431 C-terminal, D2-small domain, of ClpB protein MRET_3622 PF07724 AAA domain (Cdc48 subfamily) MRET_3622 PF02861 Clp amino terminal domain, pathogenicity island component MRET_3622 PF00004 ATPase family associated with various cellular activities (AAA) MRET_3622 PF17871 AAA lid domain MRET_3626 PF00069 Protein kinase domain MRET_3632 PF01592 NifU-like N terminal domain MRET_3653 PF00163 Ribosomal protein S4/S9 N-terminal domain MRET_3653 PF01479 S4 domain MRET_3654 PF00438 S-adenosylmethionine synthetase, N-terminal domain MRET_3654 PF02772 S-adenosylmethionine synthetase, central domain MRET_3654 PF02773 S-adenosylmethionine synthetase, C-terminal domain MRET_3656 PF00667 FAD binding domain MRET_3656 PF00258 Flavodoxin MRET_3656 PF00175 Oxidoreductase NAD-binding domain MRET_3658 PF08719 Domain of unknown function (DUF1768) MRET_3661 PF00009 Elongation factor Tu GTP binding domain MRET_3670 PF00069 Protein kinase domain MRET_3670 PF03793 PASTA domain MRET_3671 PF03793 PASTA domain MRET_3671 PF00069 Protein kinase domain MRET_3677 PF00253 Ribosomal protein S14p/S29e MRET_3678 PF00155 Aminotransferase class I and II MRET_3689 PF08240 Alcohol dehydrogenase GroES-like domain MRET_3689 PF00107 Zinc-binding dehydrogenase MRET_3701 PF00294 pfkB family carbohydrate kinase MRET_3703 PF00291 Pyridoxal-phosphate dependent enzyme MRET_3703 PF14821 Threonine synthase N terminus MRET_3718 PF00027 Cyclic nucleotide-binding domain MRET_3718 PF00520 Ion transport protein MRET_3719 PF00152 tRNA synthetases class II (D, K and N) MRET_3719 PF01336 OB-fold nucleic acid binding domain MRET_3719 PF02938 GAD domain MRET_3741 PF00753 Metallo-beta-lactamase superfamily MRET_3741 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRET_3752 PF00923 Transaldolase/Fructose-6-phosphate aldolase MRET_3754 PF05127 Helicase MRET_3754 PF13718 GNAT acetyltransferase 2 MRET_3764 PF01699 Sodium/calcium exchanger protein MRET_3765 PF00561 alpha/beta hydrolase fold MRET_3771 PF03441 FAD binding domain of DNA photolyase MRET_3771 PF00875 DNA photolyase MRET_3775 PF07690 Major Facilitator Superfamily MRET_3778 PF01409 tRNA synthetases class II core domain (F) MRET_3789 PF00013 KH domain MRET_3789 PF01138 3' exoribonuclease family, domain 1 MRET_3789 PF03725 3' exoribonuclease family, domain 2 MRET_3789 PF00575 S1 RNA binding domain MRET_3804 PF00318 Ribosomal protein S2 MRET_3821 PF00069 Protein kinase domain MRET_3824 PF05175 Methyltransferase small domain MRET_3824 PF17827 PrmC N-terminal domain MRET_3829 PF17284 Spermidine synthase tetramerisation domain MRET_3832 PF03793 PASTA domain MRET_3832 PF00069 Protein kinase domain MRET_3833 PF01699 Sodium/calcium exchanger protein MRET_3835 PF00909 Ammonium Transporter Family MRET_3836 PF01142 tRNA pseudouridine synthase D (TruD) MRET_3839 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRET_3851 PF14492 Elongation Factor G, domain II MRET_3851 PF03764 Elongation factor G, domain IV MRET_3851 PF03144 Elongation factor Tu domain 2 MRET_3851 PF00679 Elongation factor G C-terminus MRET_3851 PF00009 Elongation factor Tu GTP binding domain MRET_3853 PF01435 Peptidase family M48 MRET_3854 PF04679 ATP dependent DNA ligase C terminal region MRET_3854 PF01068 ATP dependent DNA ligase domain MRET_3854 PF04675 DNA ligase N terminus MRET_3855 PF06470 SMC proteins Flexible Hinge Domain MRET_3855 PF02463 RecF/RecN/SMC N terminal domain MRET_3857 PF00118 TCP-1/cpn60 chaperonin family MRET_3870 PF02142 MGS-like domain MRET_3870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MRET_3870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRET_3883 PF08029 HisG, C-terminal domain MRET_3883 PF01634 ATP phosphoribosyltransferase MRET_3885 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRET_3885 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRET_3893 PF03099 Biotin/lipoate A/B protein ligase family MRET_3893 PF10437 Bacterial lipoate protein ligase C-terminus MRET_3906 PF12848 ABC transporter MRET_3906 PF00005 ABC transporter MRET_3909 PF06470 SMC proteins Flexible Hinge Domain MRET_3909 PF02463 RecF/RecN/SMC N terminal domain MRET_3911 PF00572 Ribosomal protein L13 MRET_3919 PF00684 DnaJ central domain MRET_3919 PF01556 DnaJ C terminal domain MRET_3919 PF00226 DnaJ domain MRET_3938 PF06421 GTP-binding protein LepA C-terminus MRET_3938 PF03144 Elongation factor Tu domain 2 MRET_3938 PF00009 Elongation factor Tu GTP binding domain MRET_3938 PF00679 Elongation factor G C-terminus MRET_3961 PF00271 Helicase conserved C-terminal domain MRET_3961 PF00176 SNF2 family N-terminal domain MRET_3961 PF12419 SNF2 Helicase protein MRET_3963 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRET_3963 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRET_3963 PF02770 Acyl-CoA dehydrogenase, middle domain MRET_3966 PF00690 Cation transporter/ATPase, N-terminus MRET_3966 PF00689 Cation transporting ATPase, C-terminus MRET_3974 PF14572 Phosphoribosyl synthetase-associated domain MRET_3974 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MRET_3975 PF00270 DEAD/DEAH box helicase MRET_3975 PF00271 Helicase conserved C-terminal domain MRET_3985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRET_3985 PF00205 Thiamine pyrophosphate enzyme, central domain MRET_3985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRET_3994 PF00657 GDSL-like Lipase/Acylhydrolase MRET_3997 PF01008 Initiation factor 2 subunit family MRET_3998 PF00271 Helicase conserved C-terminal domain MRET_3998 PF00270 DEAD/DEAH box helicase MRET_4003 PF00005 ABC transporter MRET_4007 PF00472 RF-1 domain MRET_4007 PF03462 PCRF domain MRET_4011 PF00753 Metallo-beta-lactamase superfamily MRET_4011 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRET_4012 PF03952 Enolase, N-terminal domain MRET_4012 PF00113 Enolase, C-terminal TIM barrel domain MRET_4013 PF00675 Insulinase (Peptidase family M16) MRET_4013 PF05193 Peptidase M16 inactive domain MRET_4013 PF16187 Middle or third domain of peptidase_M16 MRET_4019 PF01274 Malate synthase MRET_4021 PF02803 Thiolase, C-terminal domain MRET_4021 PF00108 Thiolase, N-terminal domain MRET_4025 PF08543 Phosphomethylpyrimidine kinase MRET_4025 PF03070 TENA/THI-4/PQQC family MRET_4025 PF02581 Thiamine monophosphate synthase MRET_4028 PF00183 Hsp90 protein MRET_4028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRET_4045 PF01266 FAD dependent oxidoreductase MRET_4046 PF00883 Cytosol aminopeptidase family, catalytic domain MRET_4046 PF02789 Cytosol aminopeptidase family, N-terminal domain MRET_4059 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRET_4059 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRET_4065 PF16450 Proteasomal ATPase OB C-terminal domain MRET_4065 PF17758 Proteasomal ATPase OB N-terminal domain MRET_4065 PF00004 ATPase family associated with various cellular activities (AAA) MRET_4066 PF14437 MafB19-like deaminase MRET_4067 PF00491 Arginase family MRET_4073 PF00083 Sugar (and other) transporter MRET_4074 PF01728 FtsJ-like methyltransferase MRET_4076 PF01556 DnaJ C terminal domain MRET_4076 PF00226 DnaJ domain MRET_4076 PF00684 DnaJ central domain MRET_4089 PF00171 Aldehyde dehydrogenase family MRET_4094 PF00271 Helicase conserved C-terminal domain MRET_4094 PF12419 SNF2 Helicase protein MRET_4094 PF00176 SNF2 family N-terminal domain MRET_4113 PF01507 Phosphoadenosine phosphosulfate reductase family MRET_4115 PF00135 Carboxylesterase family MRET_4116 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRET_4117 PF00694 Aconitase C-terminal domain MRET_4117 PF00330 Aconitase family (aconitate hydratase) MRET_4120 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRET_4125 PF03793 PASTA domain MRET_4125 PF00069 Protein kinase domain MRET_4132 PF00561 alpha/beta hydrolase fold MRET_4142 PF01653 NAD-dependent DNA ligase adenylation domain MRET_4142 PF03120 NAD-dependent DNA ligase OB-fold domain MRET_4142 PF12826 Helix-hairpin-helix motif MRET_4142 PF00533 BRCA1 C Terminus (BRCT) domain MRET_4151 PF00069 Protein kinase domain MRET_4153 PF03109 ABC1 family MRET_4156 PF00378 Enoyl-CoA hydratase/isomerase MRET_4158 PF00133 tRNA synthetases class I (I, L, M and V) MRET_4158 PF10458 Valyl tRNA synthetase tRNA binding arm MRET_4158 PF08264 Anticodon-binding domain of tRNA MRET_4163 PF01119 DNA mismatch repair protein, C-terminal domain MRET_4163 PF08676 MutL C terminal dimerisation domain MRET_4173 PF01025 GrpE MRET_4178 PF01106 NifU-like domain MRET_4179 PF04563 RNA polymerase beta subunit MRET_4179 PF04560 RNA polymerase Rpb2, domain 7 MRET_4179 PF00562 RNA polymerase Rpb2, domain 6 MRET_4179 PF04565 RNA polymerase Rpb2, domain 3 MRET_4179 PF04561 RNA polymerase Rpb2, domain 2 MRET_4179 PF10385 RNA polymerase beta subunit external 1 domain MRET_4183 PF00535 Glycosyl transferase family 2 MRET_4186 PF00069 Protein kinase domain MRET_4192 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRET_4192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRET_4192 PF00072 Response regulator receiver domain MRET_4192 PF01627 Hpt domain MRET_4192 PF00512 His Kinase A (phospho-acceptor) domain MRET_4192 PF00672 HAMP domain MRET_4198 PF00664 ABC transporter transmembrane region MRET_4198 PF00005 ABC transporter MRET_4205 PF01813 ATP synthase subunit D MRET_4210 PF03793 PASTA domain MRET_4210 PF00069 Protein kinase domain MRET_4212 PF00571 CBS domain MRET_4212 PF01380 SIS domain MRET_4216 PF00682 HMGL-like MRET_4220 PF01207 Dihydrouridine synthase (Dus) MRET_4221 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MRET_4222 PF00005 ABC transporter MRET_4222 PF00664 ABC transporter transmembrane region MRET_4223 PF01066 CDP-alcohol phosphatidyltransferase MRET_4230 PF00667 FAD binding domain MRET_4230 PF00258 Flavodoxin MRET_4230 PF00175 Oxidoreductase NAD-binding domain MRET_4230 PF00067 Cytochrome P450 MRET_4231 PF00692 dUTPase MRET_4233 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRET_4237 PF00004 ATPase family associated with various cellular activities (AAA) MRET_4237 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRET_4237 PF05362 Lon protease (S16) C-terminal proteolytic domain MRET_4238 PF03104 DNA polymerase family B, exonuclease domain MRET_4238 PF00136 DNA polymerase family B MRET_4239 PF01029 NusB family MRET_4239 PF01189 16S rRNA methyltransferase RsmB/F MRET_4242 PF03853 YjeF-related protein N-terminus MRET_4243 PF00743 Flavin-binding monooxygenase-like MRET_4251 PF00248 Aldo/keto reductase family MRET_4264 PF00069 Protein kinase domain MRET_4264 PF14032 PknH-like extracellular domain MRET_4268 PF05190 MutS family domain IV MRET_4268 PF05192 MutS domain III MRET_4268 PF05188 MutS domain II MRET_4268 PF01624 MutS domain I MRET_4268 PF00488 MutS domain V MRET_4274 PF00069 Protein kinase domain MRET_4274 PF03793 PASTA domain MRET_4279 PF00248 Aldo/keto reductase family MRET_4284 PF05199 GMC oxidoreductase MRET_4284 PF00732 GMC oxidoreductase MRET_4285 PF00684 DnaJ central domain MRET_4285 PF01556 DnaJ C terminal domain MRET_4285 PF00226 DnaJ domain MRET_4294 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRET_4294 PF00271 Helicase conserved C-terminal domain MRET_4294 PF04408 Helicase associated domain (HA2) MRET_4294 PF00270 DEAD/DEAH box helicase MRET_4294 PF11898 Domain of unknown function (DUF3418) MRET_4297 PF00152 tRNA synthetases class II (D, K and N) MRET_4297 PF01336 OB-fold nucleic acid binding domain MRET_4298 PF08546 Ketopantoate reductase PanE/ApbA C terminal MRET_4298 PF02558 Ketopantoate reductase PanE/ApbA MRET_4301 PF00133 tRNA synthetases class I (I, L, M and V) MRET_4301 PF09334 tRNA synthetases class I (M) MRET_4301 PF08264 Anticodon-binding domain of tRNA MRET_4312 PF12838 4Fe-4S dicluster domain MRET_4314 PF10609 NUBPL iron-transfer P-loop NTPase MRET_4315 PF05191 Adenylate kinase, active site lid MRET_4316 PF11798 IMS family HHH motif MRET_4316 PF00817 impB/mucB/samB family MRET_4316 PF11799 impB/mucB/samB family C-terminal domain MRET_4318 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MRET_4318 PF00925 GTP cyclohydrolase II MRET_4319 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRET_4319 PF02874 ATP synthase alpha/beta family, beta-barrel domain MRET_4319 PF16886 ATPsynthase alpha/beta subunit N-term extension MRET_4320 PF01434 Peptidase family M41 MRET_4320 PF00004 ATPase family associated with various cellular activities (AAA) MRET_4320 PF17862 AAA+ lid domain MRET_4320 PF06480 FtsH Extracellular MRET_4322 PF00108 Thiolase, N-terminal domain MRET_4322 PF02803 Thiolase, C-terminal domain MRET_4333 PF07859 alpha/beta hydrolase fold MRET_4334 PF00970 Oxidoreductase FAD-binding domain MRET_4334 PF00111 2Fe-2S iron-sulfur cluster binding domain MRET_4334 PF00175 Oxidoreductase NAD-binding domain MRET_4339 PF13537 Glutamine amidotransferase domain MRET_4339 PF00733 Asparagine synthase MRET_4350 PF05191 Adenylate kinase, active site lid MRET_4353 PF00425 chorismate binding enzyme MRET_4353 PF04715 Anthranilate synthase component I, N terminal region MRET_4357 PF01597 Glycine cleavage H-protein MRET_4369 PF00268 Ribonucleotide reductase, small chain MRET_4385 PF00203 Ribosomal protein S19