locus-tag class description MK0001 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain MK0001 PF01137 RNA 3'-terminal phosphate cyclase MK0003 PF01926 50S ribosome-binding GTPase MK0003 PF01018 GTP1/OBG MK0005 PF00004 ATPase family associated with various cellular activities (AAA) MK0005 PF06480 FtsH Extracellular MK0005 PF01434 Peptidase family M41 MK0005 PF17862 AAA+ lid domain MK0006 PF17864 RuvB AAA lid domain MK0006 PF05491 RuvB C-terminal winged helix domain MK0006 PF05496 Holliday junction DNA helicase RuvB P-loop domain MK0007 PF00004 ATPase family associated with various cellular activities (AAA) MK0007 PF17862 AAA+ lid domain MK0007 PF06480 FtsH Extracellular MK0007 PF01434 Peptidase family M41 MK0015 PF01784 NIF3 (NGG1p interacting factor 3) MK0016 PF06968 Biotin and Thiamin Synthesis associated domain MK0016 PF04055 Radical SAM superfamily MK0021 PF01048 Phosphorylase superfamily MK0022 PF02224 Cytidylate kinase MK0026 PF00344 SecY translocase MK0029 PF00333 Ribosomal protein S5, N-terminal domain MK0029 PF03719 Ribosomal protein S5, C-terminal domain MK0036 PF12631 MnmE helical domain MK0036 PF01926 50S ribosome-binding GTPase MK0036 PF10396 GTP-binding protein TrmE N-terminus MK0039 PF06745 KaiC MK0043 PF01029 NusB family MK0043 PF01189 16S rRNA methyltransferase RsmB/F MK0044 PF16199 Radical_SAM C-terminal domain MK0044 PF04055 Radical SAM superfamily MK0045 PF01926 50S ribosome-binding GTPase MK0049 PF01131 DNA topoisomerase MK0049 PF00270 DEAD/DEAH box helicase MK0049 PF17915 Reverse gyrase zinc finger MK0049 PF01751 Toprim domain MK0051 PF01171 PP-loop family MK0054 PF00543 Nitrogen regulatory protein P-II MK0057 PF01949 Protein of unknown function DUF99 MK0062 PF05175 Methyltransferase small domain MK0070 PF13195 Protein of unknown function (DUF4011) MK0070 PF13087 AAA domain MK0070 PF13086 AAA domain MK0073 PF02445 Quinolinate synthetase A protein MK0079 PF00800 Prephenate dehydratase MK0079 PF01817 Chorismate mutase type II MK0079 PF01842 ACT domain MK0080 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MK0082 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MK0082 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MK0083 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MK0084 PF12838 4Fe-4S dicluster domain MK0085 PF05683 Fumarase C-terminus MK0085 PF05681 Fumarate hydratase (Fumerase) MK0086 PF05683 Fumarase C-terminus MK0089 PF00478 IMP dehydrogenase / GMP reductase domain MK0089 PF00571 CBS domain MK0091 PF12848 ABC transporter MK0091 PF16326 ABC transporter C-terminal domain MK0091 PF00005 ABC transporter MK0094 PF01958 Domain of unknown function DUF108 MK0094 PF03447 Homoserine dehydrogenase, NAD binding domain MK0097 PF16861 Carbamoyltransferase C-terminus MK0097 PF02543 Carbamoyltransferase N-terminus MK0098 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MK0098 PF01872 RibD C-terminal domain MK0101 PF02223 Thymidylate kinase MK0103 PF00733 Asparagine synthase MK0103 PF13537 Glutamine amidotransferase domain MK0106 PF01964 Radical SAM ThiC family MK0109 PF03447 Homoserine dehydrogenase, NAD binding domain MK0109 PF00742 Homoserine dehydrogenase MK0109 PF13840 ACT domain MK0109 PF01842 ACT domain MK0109 PF00696 Amino acid kinase family MK0111 PF00270 DEAD/DEAH box helicase MK0111 PF08148 DSHCT (NUC185) domain MK0111 PF00271 Helicase conserved C-terminal domain MK0112 PF00132 Bacterial transferase hexapeptide (six repeats) MK0114 PF02222 ATP-grasp domain MK0116 PF02741 FTR, proximal lobe MK0116 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase MK0117 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MK0117 PF01488 Shikimate / quinate 5-dehydrogenase MK0117 PF08501 Shikimate dehydrogenase substrate binding domain MK0122 PF00464 Serine hydroxymethyltransferase MK0126 PF02833 DHHA2 domain MK0126 PF01368 DHH family MK0127 PF01380 SIS domain MK0128 PF01546 Peptidase family M20/M25/M40 MK0128 PF07687 Peptidase dimerisation domain MK0129 PF02637 GatB domain MK0129 PF02934 GatB/GatE catalytic domain MK0130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MK0130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MK0132 PF13085 2Fe-2S iron-sulfur cluster binding domain MK0132 PF13183 4Fe-4S dicluster domain MK0133 PF01509 TruB family pseudouridylate synthase (N terminal domain) MK0133 PF16198 tRNA pseudouridylate synthase B C-terminal domain MK0133 PF09157 Pseudouridine synthase II TruB, C-terminal MK0138 PF04029 2-phosphosulpholactate phosphatase MK0141 PF01925 Sulfite exporter TauE/SafE MK0142 PF00582 Universal stress protein family MK0143 PF01925 Sulfite exporter TauE/SafE MK0146 PF17176 tRNA-binding domain MK0146 PF08351 Domain of unknown function (DUF1726) MK0146 PF05127 Helicase MK0146 PF13718 GNAT acetyltransferase 2 MK0148 PF00009 Elongation factor Tu GTP binding domain MK0148 PF03144 Elongation factor Tu domain 2 MK0148 PF09106 Elongation factor SelB, winged helix MK0148 PF09107 Elongation factor SelB, winged helix MK0151 PF01980 tRNA-methyltransferase O MK0152 PF03129 Anticodon binding domain MK0152 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MK0153 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MK0154 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase MK0156 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MK0157 PF00575 S1 RNA binding domain MK0157 PF03725 3' exoribonuclease family, domain 2 MK0157 PF01138 3' exoribonuclease family, domain 1 MK0157 PF00013 KH domain MK0157 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MK0161 PF01066 CDP-alcohol phosphatidyltransferase MK0162 PF02666 Phosphatidylserine decarboxylase MK0163 PF01209 ubiE/COQ5 methyltransferase family MK0164 PF00679 Elongation factor G C-terminus MK0164 PF06421 GTP-binding protein LepA C-terminus MK0164 PF03144 Elongation factor Tu domain 2 MK0164 PF00009 Elongation factor Tu GTP binding domain MK0164 PF14492 Elongation Factor G, domain II MK0171 PF01435 Peptidase family M48 MK0173 PF00977 Histidine biosynthesis protein MK0178 PF00374 Nickel-dependent hydrogenase MK0179 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal MK0179 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MK0182 PF00005 ABC transporter MK0183 PF02633 Creatinine amidohydrolase MK0186 PF01351 Ribonuclease HII MK0187 PF04055 Radical SAM superfamily MK0188 PF01702 Queuine tRNA-ribosyltransferase MK0189 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase MK0190 PF14010 Phosphoenolpyruvate carboxylase MK0192 PF17863 AAA lid domain MK0192 PF01078 Magnesium chelatase, subunit ChlI MK0193 PF10576 Iron-sulfur binding domain of endonuclease III MK0193 PF00633 Helix-hairpin-helix motif MK0193 PF00730 HhH-GPD superfamily base excision DNA repair protein MK0194 PF13286 Phosphohydrolase-associated domain MK0194 PF01966 HD domain MK0198 PF00490 Delta-aminolevulinic acid dehydratase MK0200 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MK0200 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MK0200 PF01488 Shikimate / quinate 5-dehydrogenase MK0205 PF00117 Glutamine amidotransferase class-I MK0205 PF06418 CTP synthase N-terminus MK0207 PF01926 50S ribosome-binding GTPase MK0218 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MK0219 PF00696 Amino acid kinase family MK0219 PF01472 PUA domain MK0223 PF00557 Metallopeptidase family M24 MK0224 PF02277 Phosphoribosyltransferase MK0226 PF01924 Hydrogenase formation hypA family MK0227 PF01455 HupF/HypC family MK0234 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MK0235 PF00709 Adenylosuccinate synthetase MK0238 PF01425 Amidase MK0239 PF00398 Ribosomal RNA adenine dimethylase MK0240 PF10609 NUBPL iron-transfer P-loop NTPase MK0246 PF00338 Ribosomal protein S10p/S20e MK0247 PF03144 Elongation factor Tu domain 2 MK0247 PF00009 Elongation factor Tu GTP binding domain MK0247 PF03143 Elongation factor Tu C-terminal domain MK0248 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MK0248 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MK0252 PF00391 PEP-utilising enzyme, mobile domain MK0252 PF02896 PEP-utilising enzyme, TIM barrel domain MK0252 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MK0257 PF01206 Sulfurtransferase TusA MK0258 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component MK0259 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MK0259 PF00384 Molybdopterin oxidoreductase MK0259 PF01568 Molydopterin dinucleotide binding domain MK0259 PF04324 BFD-like [2Fe-2S] binding domain MK0260 PF01869 BadF/BadG/BcrA/BcrD ATPase family MK0265 PF00890 FAD binding domain MK0265 PF14537 Cytochrome c3 MK0266 PF00374 Nickel-dependent hydrogenase MK0267 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MK0271 PF01409 tRNA synthetases class II core domain (F) MK0273 PF02594 Uncharacterised ACR, YggU family COG1872 MK0275 PF08502 LeuA allosteric (dimerisation) domain MK0275 PF00682 HMGL-like MK0280 PF00202 Aminotransferase class-III MK0281 PF00885 6,7-dimethyl-8-ribityllumazine synthase MK0289 PF01131 DNA topoisomerase MK0289 PF00270 DEAD/DEAH box helicase MK0289 PF17915 Reverse gyrase zinc finger MK0289 PF01751 Toprim domain MK0291 PF00692 dUTPase MK0293 PF01969 Protein of unknown function DUF111 MK0295 PF01189 16S rRNA methyltransferase RsmB/F MK0295 PF01029 NusB family MK0297 PF01842 ACT domain MK0297 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MK0297 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MK0320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MK0320 PF01842 ACT domain MK0320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MK0333 PF08544 GHMP kinases C terminal MK0333 PF00288 GHMP kinases N terminal domain MK0334 PF01888 CbiD MK0335 PF01008 Initiation factor 2 subunit family MK0338 PF00120 Glutamine synthetase, catalytic domain MK0338 PF03951 Glutamine synthetase, beta-Grasp domain MK0343 PF00579 tRNA synthetases class I (W and Y) MK0344 PF01728 FtsJ-like methyltransferase MK0363 PF02568 Thiamine biosynthesis protein (ThiI) MK0363 PF00117 Glutamine amidotransferase class-I MK0363 PF00958 GMP synthase C terminal domain MK0364 PF00977 Histidine biosynthesis protein MK0365 PF08029 HisG, C-terminal domain MK0365 PF01634 ATP phosphoribosyltransferase MK0366 PF01979 Amidohydrolase family MK0368 PF05221 S-adenosyl-L-homocysteine hydrolase MK0368 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MK0370 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MK0370 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MK0370 PF01189 16S rRNA methyltransferase RsmB/F MK0372 PF04101 Glycosyltransferase family 28 C-terminal domain MK0372 PF03033 Glycosyltransferase family 28 N-terminal domain MK0373 PF06071 Protein of unknown function (DUF933) MK0373 PF01926 50S ribosome-binding GTPase MK0380 PF03725 3' exoribonuclease family, domain 2 MK0380 PF01138 3' exoribonuclease family, domain 1 MK0381 PF01138 3' exoribonuclease family, domain 1 MK0381 PF03725 3' exoribonuclease family, domain 2 MK0383 PF05343 M42 glutamyl aminopeptidase MK0385 PF00227 Proteasome subunit MK0390 PF01966 HD domain MK0391 PF08502 LeuA allosteric (dimerisation) domain MK0391 PF00682 HMGL-like MK0392 PF02615 Malate/L-lactate dehydrogenase MK0394 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) MK0398 PF00849 RNA pseudouridylate synthase MK0398 PF01479 S4 domain MK0403 PF00290 Tryptophan synthase alpha chain MK0404 PF01699 Sodium/calcium exchanger protein MK0408 PF06271 RDD family MK0409 PF01965 DJ-1/PfpI family MK0409 PF12833 Helix-turn-helix domain MK0412 PF03947 Ribosomal Proteins L2, C-terminal domain MK0412 PF00181 Ribosomal Proteins L2, RNA binding domain MK0413 PF00276 Ribosomal protein L23 MK0414 PF00573 Ribosomal protein L4/L1 family MK0415 PF00297 Ribosomal protein L3 MK0419 PF03725 3' exoribonuclease family, domain 2 MK0419 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MK0419 PF01138 3' exoribonuclease family, domain 1 MK0419 PF00575 S1 RNA binding domain MK0419 PF00013 KH domain MK0426 PF01979 Amidohydrolase family MK0429 PF01487 Type I 3-dehydroquinase MK0433 PF01975 Survival protein SurE MK0434 PF01678 Diaminopimelate epimerase MK0435 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal MK0435 PF00132 Bacterial transferase hexapeptide (six repeats) MK0435 PF14602 Hexapeptide repeat of succinyl-transferase MK0436 PF00591 Glycosyl transferase family, a/b domain MK0436 PF02885 Glycosyl transferase family, helical bundle domain MK0436 PF00117 Glutamine amidotransferase class-I MK0437 PF04715 Anthranilate synthase component I, N terminal region MK0437 PF00425 chorismate binding enzyme MK0439 PF01409 tRNA synthetases class II core domain (F) MK0439 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MK0444 PF01189 16S rRNA methyltransferase RsmB/F MK0444 PF01029 NusB family MK0446 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MK0446 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MK0456 PF01926 50S ribosome-binding GTPase MK0456 PF13167 GTP-binding GTPase N-terminal MK0456 PF16360 GTP-binding GTPase Middle Region MK0459 PF12838 4Fe-4S dicluster domain MK0463 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MK0463 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MK0464 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MK0478 PF17862 AAA+ lid domain MK0478 PF00004 ATPase family associated with various cellular activities (AAA) MK0478 PF01434 Peptidase family M41 MK0482 PF00919 Uncharacterized protein family UPF0004 MK0482 PF04055 Radical SAM superfamily MK0482 PF18693 TRAM domain MK0483 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MK0483 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MK0485 PF02649 Type I GTP cyclohydrolase folE2 MK0486 PF00004 ATPase family associated with various cellular activities (AAA) MK0486 PF06480 FtsH Extracellular MK0486 PF01434 Peptidase family M41 MK0486 PF17862 AAA+ lid domain MK0488 PF01871 AMMECR1 MK0489 PF02585 GlcNAc-PI de-N-acetylase MK0491 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MK0491 PF00117 Glutamine amidotransferase class-I MK0494 PF01966 HD domain MK0494 PF00013 KH domain MK0494 PF12072 Domain of unknown function (DUF3552) MK0497 PF02769 AIR synthase related protein, C-terminal domain MK0497 PF00586 AIR synthase related protein, N-terminal domain MK0497 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MK0499 PF10150 Ribonuclease E/G family MK0500 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MK0504 PF00857 Isochorismatase family MK0508 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MK0509 PF02514 CobN/Magnesium Chelatase MK0509 PF11965 Domain of unknown function (DUF3479) MK0513 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MK0513 PF03725 3' exoribonuclease family, domain 2 MK0513 PF00013 KH domain MK0513 PF00575 S1 RNA binding domain MK0513 PF01138 3' exoribonuclease family, domain 1 MK0516 PF01479 S4 domain MK0516 PF00579 tRNA synthetases class I (W and Y) MK0519 PF00588 SpoU rRNA Methylase family MK0520 PF09383 NIL domain MK0520 PF00005 ABC transporter MK0524 PF00296 Luciferase-like monooxygenase MK0525 PF00571 CBS domain MK0526 PF00571 CBS domain MK0526 PF01743 Poly A polymerase head domain MK0530 PF01979 Amidohydrolase family MK0531 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MK0531 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MK0531 PF00205 Thiamine pyrophosphate enzyme, central domain MK0533 PF01026 TatD related DNase MK0536 PF03063 Prismane/CO dehydrogenase family MK0537 PF00374 Nickel-dependent hydrogenase MK0538 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MK0539 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus MK0539 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term MK0544 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MK0544 PF03129 Anticodon binding domain MK0544 PF02824 TGS domain MK0544 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MK0545 PF10369 Small subunit of acetolactate synthase MK0546 PF01026 TatD related DNase MK0549 PF00583 Acetyltransferase (GNAT) family MK0550 PF01645 Conserved region in glutamate synthase MK0551 PF00117 Glutamine amidotransferase class-I MK0551 PF00958 GMP synthase C terminal domain MK0551 PF02540 NAD synthase MK0552 PF00999 Sodium/hydrogen exchanger family MK0553 PF00994 Probable molybdopterin binding domain MK0554 PF01967 MoaC family MK0561 PF01384 Phosphate transporter family MK0563 PF01180 Dihydroorotate dehydrogenase MK0564 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B MK0566 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MK0566 PF01367 5'-3' exonuclease, C-terminal SAM fold MK0578 PF01467 Cytidylyltransferase-like MK0578 PF00294 pfkB family carbohydrate kinase MK0580 PF01869 BadF/BadG/BcrA/BcrD ATPase family MK0582 PF04055 Radical SAM superfamily MK0582 PF02579 Dinitrogenase iron-molybdenum cofactor MK0602 PF00528 Binding-protein-dependent transport system inner membrane component MK0603 PF00005 ABC transporter MK0606 PF07885 Ion channel MK0606 PF02254 TrkA-N domain MK0607 PF02769 AIR synthase related protein, C-terminal domain MK0607 PF00586 AIR synthase related protein, N-terminal domain MK0610 PF00156 Phosphoribosyl transferase domain MK0613 PF00557 Metallopeptidase family M24 MK0616 PF13335 Magnesium chelatase, subunit ChlI C-terminal MK0616 PF01078 Magnesium chelatase, subunit ChlI MK0617 PF13662 Toprim domain MK0617 PF08275 DNA primase catalytic core, N-terminal domain MK0617 PF01807 CHC2 zinc finger MK0620 PF12390 Selenocysteine synthase N terminal MK0620 PF03841 L-seryl-tRNA selenium transferase MK0621 PF01507 Phosphoadenosine phosphosulfate reductase family MK0622 PF00206 Lyase MK0622 PF14698 Argininosuccinate lyase C-terminal MK0625 PF02289 Cyclohydrolase (MCH) MK0628 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MK0631 PF01264 Chorismate synthase MK0633 PF00266 Aminotransferase class-V MK0635 PF01300 Telomere recombination MK0642 PF01884 PcrB family MK0648 PF00708 Acylphosphatase MK0648 PF17788 HypF Kae1-like domain MK0648 PF01300 Telomere recombination MK0648 PF07503 HypF finger MK0662 PF02007 Tetrahydromethanopterin S-methyltransferase MtrH subunit MK0663 PF02514 CobN/Magnesium Chelatase MK0664 PF02514 CobN/Magnesium Chelatase MK0667 PF08267 Cobalamin-independent synthase, N-terminal domain MK0667 PF01717 Cobalamin-independent synthase, Catalytic domain MK0673 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MK0673 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MK0673 PF01189 16S rRNA methyltransferase RsmB/F MK0676 PF01142 tRNA pseudouridine synthase D (TruD) MK0678 PF02885 Glycosyl transferase family, helical bundle domain MK0678 PF00591 Glycosyl transferase family, a/b domain MK0679 PF03144 Elongation factor Tu domain 2 MK0679 PF00009 Elongation factor Tu GTP binding domain MK0679 PF03764 Elongation factor G, domain IV MK0679 PF14492 Elongation Factor G, domain II MK0679 PF00679 Elongation factor G C-terminus MK0680 PF00177 Ribosomal protein S7p/S5e MK0682 PF13184 NusA-like KH domain MK0682 PF00575 S1 RNA binding domain MK0682 PF08529 NusA N-terminal domain MK0684 PF04997 RNA polymerase Rpb1, domain 1 MK0684 PF05000 RNA polymerase Rpb1, domain 4 MK0684 PF00623 RNA polymerase Rpb1, domain 2 MK0684 PF04998 RNA polymerase Rpb1, domain 5 MK0684 PF04983 RNA polymerase Rpb1, domain 3 MK0685 PF00623 RNA polymerase Rpb1, domain 2 MK0685 PF04983 RNA polymerase Rpb1, domain 3 MK0685 PF04997 RNA polymerase Rpb1, domain 1 MK0685 PF05000 RNA polymerase Rpb1, domain 4 MK0685 PF04998 RNA polymerase Rpb1, domain 5 MK0686 PF00562 RNA polymerase Rpb2, domain 6 MK0686 PF04563 RNA polymerase beta subunit MK0686 PF04560 RNA polymerase Rpb2, domain 7 MK0686 PF04565 RNA polymerase Rpb2, domain 3 MK0686 PF04561 RNA polymerase Rpb2, domain 2 MK0686 PF10385 RNA polymerase beta subunit external 1 domain MK0687 PF04563 RNA polymerase beta subunit MK0687 PF04561 RNA polymerase Rpb2, domain 2 MK0687 PF04565 RNA polymerase Rpb2, domain 3 MK0687 PF10385 RNA polymerase beta subunit external 1 domain MK0687 PF04560 RNA polymerase Rpb2, domain 7 MK0687 PF00562 RNA polymerase Rpb2, domain 6 MK0690 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system MK0690 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system MK0707 PF00437 Type II/IV secretion system protein MK0709 PF05175 Methyltransferase small domain MK0710 PF01336 OB-fold nucleic acid binding domain MK0710 PF00152 tRNA synthetases class II (D, K and N) MK0711 PF00815 Histidinol dehydrogenase MK0713 PF02441 Flavoprotein MK0713 PF04127 DNA / pantothenate metabolism flavoprotein MK0720 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain MK0720 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit MK0721 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MK0723 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit MK0723 PF04060 Putative Fe-S cluster MK0724 PF16363 GDP-mannose 4,6 dehydratase MK0725 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MK0725 PF13247 4Fe-4S dicluster domain MK0725 PF07992 Pyridine nucleotide-disulphide oxidoreductase MK0726 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MK0728 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MK0728 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MK0728 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MK0729 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MK0730 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MK0731 PF00549 CoA-ligase MK0731 PF08442 ATP-grasp domain MK0732 PF02629 CoA binding domain MK0732 PF00549 CoA-ligase MK0735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MK0737 PF01916 Deoxyhypusine synthase MK0738 PF00491 Arginase family MK0739 PF01132 Elongation factor P (EF-P) OB domain MK0739 PF08207 Elongation factor P (EF-P) KOW-like domain MK0739 PF09285 Elongation factor P, C-terminal MK0741 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MK0742 PF01513 ATP-NAD kinase MK0746 PF03900 Porphobilinogen deaminase, C-terminal domain MK0746 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MK0747 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK0752 PF02875 Mur ligase family, glutamate ligase domain MK0752 PF08245 Mur ligase middle domain MK0753 PF00953 Glycosyl transferase family 4 MK0753 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MK0754 PF02142 MGS-like domain MK0754 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MK0754 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MK0755 PF08245 Mur ligase middle domain MK0755 PF02875 Mur ligase family, glutamate ligase domain MK0755 PF01225 Mur ligase family, catalytic domain MK0757 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MK0757 PF00749 tRNA synthetases class I (E and Q), catalytic domain MK0758 PF00750 tRNA synthetases class I (R) MK0758 PF03485 Arginyl tRNA synthetase N terminal domain MK0758 PF05746 DALR anticodon binding domain MK0760 PF00696 Amino acid kinase family MK0766 PF02562 PhoH-like protein MK0767 PF01255 Putative undecaprenyl diphosphate synthase MK0769 PF01189 16S rRNA methyltransferase RsmB/F MK0769 PF01029 NusB family MK0772 PF01926 50S ribosome-binding GTPase MK0772 PF07650 KH domain MK0774 PF00348 Polyprenyl synthetase MK0775 PF17770 Ribonuclease J C-terminal domain MK0775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MK0775 PF00753 Metallo-beta-lactamase superfamily MK0776 PF01070 FMN-dependent dehydrogenase MK0777 PF01472 PUA domain MK0777 PF00696 Amino acid kinase family MK0778 PF02926 THUMP domain MK0778 PF02568 Thiamine biosynthesis protein (ThiI) MK0781 PF00694 Aconitase C-terminal domain MK0782 PF00180 Isocitrate/isopropylmalate dehydrogenase MK0784 PF00291 Pyridoxal-phosphate dependent enzyme MK0787 PF05636 HIGH Nucleotidyl Transferase MK0788 PF00919 Uncharacterized protein family UPF0004 MK0788 PF04055 Radical SAM superfamily MK0791 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase MK0792 PF01259 SAICAR synthetase MK0795 PF00586 AIR synthase related protein, N-terminal domain MK0795 PF02769 AIR synthase related protein, C-terminal domain MK0797 PF04055 Radical SAM superfamily MK0797 PF00919 Uncharacterized protein family UPF0004 MK0797 PF01938 TRAM domain MK0798 PF02153 Prephenate dehydrogenase MK0799 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term MK0799 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus MK0804 PF12850 Calcineurin-like phosphoesterase superfamily domain MK0807 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase MK0808 PF03853 YjeF-related protein N-terminus MK0808 PF01256 Carbohydrate kinase MK0810 PF02492 CobW/HypB/UreG, nucleotide-binding domain MK0814 PF01894 Uncharacterised protein family UPF0047 MK0816 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase MK0816 PF02741 FTR, proximal lobe MK0817 PF00294 pfkB family carbohydrate kinase MK0818 PF04055 Radical SAM superfamily MK0819 PF01242 6-pyruvoyl tetrahydropterin synthase MK0820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MK0820 PF03484 tRNA synthetase B5 domain MK0821 PF00091 Tubulin/FtsZ family, GTPase domain MK0821 PF12327 FtsZ family, C-terminal domain MK0824 PF03946 Ribosomal protein L11, N-terminal domain MK0824 PF00298 Ribosomal protein L11, RNA binding domain MK0825 PF00687 Ribosomal protein L1p/L10e family MK0826 PF00466 Ribosomal protein L10 MK0827 PF03266 NTPase MK0828 PF02910 Fumarate reductase flavoprotein C-term MK0828 PF00890 FAD binding domain MK0829 PF01979 Amidohydrolase family MK0829 PF13382 Adenine deaminase C-terminal domain MK0832 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MK0832 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MK0835 PF03880 DbpA RNA binding domain MK0835 PF00270 DEAD/DEAH box helicase MK0835 PF00271 Helicase conserved C-terminal domain MK0840 PF03702 Anhydro-N-acetylmuramic acid kinase MK0841 PF00237 Ribosomal protein L22p/L17e MK0842 PF00189 Ribosomal protein S3, C-terminal domain MK0842 PF07650 KH domain MK0847 PF16200 C-terminal region of band_7 MK0847 PF01145 SPFH domain / Band 7 family MK0849 PF07992 Pyridine nucleotide-disulphide oxidoreductase MK0849 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MK0849 PF00403 Heavy-metal-associated domain MK0850 PF09334 tRNA synthetases class I (M) MK0850 PF01588 Putative tRNA binding domain MK0855 PF00475 Imidazoleglycerol-phosphate dehydratase MK0855 PF08645 Polynucleotide kinase 3 phosphatase MK0862 PF01895 PhoU domain MK0865 PF01960 ArgJ family MK0869 PF00571 CBS domain MK0869 PF00478 IMP dehydrogenase / GMP reductase domain MK0878 PF01434 Peptidase family M41 MK0878 PF06480 FtsH Extracellular MK0878 PF17862 AAA+ lid domain MK0878 PF00004 ATPase family associated with various cellular activities (AAA) MK0880 PF00535 Glycosyl transferase family 2 MK0881 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MK0881 PF07992 Pyridine nucleotide-disulphide oxidoreductase MK0888 PF01416 tRNA pseudouridine synthase MK0892 PF00483 Nucleotidyl transferase MK0893 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MK0893 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MK0893 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MK0893 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MK0896 PF13186 Iron-sulfur cluster-binding domain MK0896 PF04055 Radical SAM superfamily MK0897 PF04055 Radical SAM superfamily MK0898 PF04055 Radical SAM superfamily MK0899 PF08264 Anticodon-binding domain of tRNA MK0899 PF00133 tRNA synthetases class I (I, L, M and V) MK0900 PF01411 tRNA synthetases class II (A) MK0900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MK0900 PF02272 DHHA1 domain MK0901 PF03477 ATP cone domain MK0901 PF13597 Anaerobic ribonucleoside-triphosphate reductase MK0907 PF00571 CBS domain MK0908 PF02568 Thiamine biosynthesis protein (ThiI) MK0908 PF02926 THUMP domain MK0911 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MK0911 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MK0911 PF02142 MGS-like domain MK0917 PF00483 Nucleotidyl transferase MK0920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MK0920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MK0920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MK0920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MK0932 PF00919 Uncharacterized protein family UPF0004 MK0932 PF01938 TRAM domain MK0932 PF04055 Radical SAM superfamily MK0934 PF00398 Ribosomal RNA adenine dimethylase MK0942 PF00764 Arginosuccinate synthase MK0944 PF00005 ABC transporter MK0944 PF12857 TOBE-like domain MK0950 PF01661 Macro domain MK0952 PF04055 Radical SAM superfamily MK0953 PF01040 UbiA prenyltransferase family MK0954 PF01950 Fructose-1,6-bisphosphatase MK0955 PF00889 Elongation factor TS MK0957 PF01523 Putative modulator of DNA gyrase MK0960 PF02934 GatB/GatE catalytic domain MK0960 PF02637 GatB domain MK0963 PF01875 Memo-like protein MK0970 PF13419 Haloacid dehalogenase-like hydrolase MK0971 PF01996 F420-0:Gamma-glutamyl ligase MK0971 PF00881 Nitroreductase family MK0974 PF00291 Pyridoxal-phosphate dependent enzyme MK0977 PF04101 Glycosyltransferase family 28 C-terminal domain MK0977 PF03033 Glycosyltransferase family 28 N-terminal domain MK0980 PF04055 Radical SAM superfamily MK0980 PF13186 Iron-sulfur cluster-binding domain MK0981 PF02163 Peptidase family M50 MK0983 PF03483 B3/4 domain MK0983 PF03484 tRNA synthetase B5 domain MK0983 PF01588 Putative tRNA binding domain MK0983 PF03147 Ferredoxin-fold anticodon binding domain MK0983 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MK0986 PF01921 tRNA synthetases class I (K) MK0989 PF04055 Radical SAM superfamily MK0989 PF06463 Molybdenum Cofactor Synthesis C MK0990 PF00203 Ribosomal protein S19 MK0992 PF04055 Radical SAM superfamily MK0992 PF02310 B12 binding domain MK0993 PF08544 GHMP kinases C terminal MK0993 PF10509 Galactokinase galactose-binding signature MK0993 PF00288 GHMP kinases N terminal domain MK0995 PF08245 Mur ligase middle domain MK0995 PF01225 Mur ligase family, catalytic domain MK0995 PF02875 Mur ligase family, glutamate ligase domain MK0999 PF01068 ATP dependent DNA ligase domain MK0999 PF04679 ATP dependent DNA ligase C terminal region MK0999 PF04675 DNA ligase N terminus MK1002 PF01557 Fumarylacetoacetate (FAA) hydrolase family MK1004 PF01925 Sulfite exporter TauE/SafE MK1006 PF00118 TCP-1/cpn60 chaperonin family MK1009 PF02355 Protein export membrane protein MK1010 PF02386 Cation transport protein MK1011 PF02254 TrkA-N domain MK1011 PF02080 TrkA-C domain MK1012 PF01496 V-type ATPase 116kDa subunit family MK1017 PF02874 ATP synthase alpha/beta family, beta-barrel domain MK1017 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MK1017 PF16886 ATPsynthase alpha/beta subunit N-term extension MK1022 PF01938 TRAM domain MK1022 PF05958 tRNA (Uracil-5-)-methyltransferase MK1024 PF00155 Aminotransferase class I and II MK1028 PF13344 Haloacid dehalogenase-like hydrolase MK1028 PF00293 NUDIX domain MK1032 PF00154 recA bacterial DNA recombination protein MK1033 PF12706 Beta-lactamase superfamily domain MK1035 PF00271 Helicase conserved C-terminal domain MK1035 PF00270 DEAD/DEAH box helicase MK1035 PF08494 DEAD/H associated MK1037 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1038 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1041 PF02514 CobN/Magnesium Chelatase MK1041 PF11965 Domain of unknown function (DUF3479) MK1047 PF02875 Mur ligase family, glutamate ligase domain MK1047 PF08245 Mur ligase middle domain MK1048 PF02538 Hydantoinase B/oxoprolinase MK1052 PF04055 Radical SAM superfamily MK1052 PF00583 Acetyltransferase (GNAT) family MK1052 PF16199 Radical_SAM C-terminal domain MK1054 PF01171 PP-loop family MK1055 PF00850 Histone deacetylase domain MK1056 PF03176 MMPL family MK1058 PF01018 GTP1/OBG MK1058 PF01926 50S ribosome-binding GTPase MK1058 PF04055 Radical SAM superfamily MK1061 PF12804 MobA-like NTP transferase domain MK1061 PF00132 Bacterial transferase hexapeptide (six repeats) MK1061 PF14602 Hexapeptide repeat of succinyl-transferase MK1062 PF01174 SNO glutamine amidotransferase family MK1063 PF01380 SIS domain MK1065 PF06508 Queuosine biosynthesis protein QueC MK1067 PF17785 PUA-like domain MK1067 PF10672 S-adenosylmethionine-dependent methyltransferase MK1069 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MK1069 PF00056 lactate/malate dehydrogenase, NAD binding domain MK1070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MK1070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MK1071 PF02843 Phosphoribosylglycinamide synthetase, C domain MK1071 PF02844 Phosphoribosylglycinamide synthetase, N domain MK1071 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MK1072 PF00156 Phosphoribosyl transferase domain MK1074 PF06463 Molybdenum Cofactor Synthesis C MK1074 PF04055 Radical SAM superfamily MK1075 PF02146 Sir2 family MK1077 PF02774 Semialdehyde dehydrogenase, dimerisation domain MK1077 PF01118 Semialdehyde dehydrogenase, NAD binding domain MK1081 PF00919 Uncharacterized protein family UPF0004 MK1081 PF04055 Radical SAM superfamily MK1081 PF18693 TRAM domain MK1083 PF00534 Glycosyl transferases group 1 MK1085 PF00206 Lyase MK1085 PF10397 Adenylosuccinate lyase C-terminus MK1086 PF06463 Molybdenum Cofactor Synthesis C MK1086 PF04055 Radical SAM superfamily MK1087 PF00543 Nitrogen regulatory protein P-II MK1090 PF00571 CBS domain MK1090 PF01743 Poly A polymerase head domain MK1091 PF05378 Hydantoinase/oxoprolinase N-terminal region MK1091 PF01968 Hydantoinase/oxoprolinase MK1100 PF05190 MutS family domain IV MK1100 PF01624 MutS domain I MK1100 PF05188 MutS domain II MK1100 PF05192 MutS domain III MK1100 PF00488 MutS domain V MK1103 PF01171 PP-loop family MK1105 PF01969 Protein of unknown function DUF111 MK1108 PF00171 Aldehyde dehydrogenase family MK1129 PF00117 Glutamine amidotransferase class-I MK1129 PF00958 GMP synthase C terminal domain MK1129 PF02568 Thiamine biosynthesis protein (ThiI) MK1189 PF00005 ABC transporter MK1191 PF01569 PAP2 superfamily MK1192 PF01784 NIF3 (NGG1p interacting factor 3) MK1193 PF01676 Metalloenzyme superfamily MK1193 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase MK1195 PF00731 AIR carboxylase MK1197 PF00920 Dehydratase family MK1198 PF01914 MarC family integral membrane protein MK1199 PF01926 50S ribosome-binding GTPase MK1199 PF01018 GTP1/OBG MK1199 PF09269 Domain of unknown function (DUF1967) MK1200 PF00483 Nucleotidyl transferase MK1200 PF00132 Bacterial transferase hexapeptide (six repeats) MK1201 PF02416 mttA/Hcf106 family MK1202 PF00374 Nickel-dependent hydrogenase MK1206 PF00694 Aconitase C-terminal domain MK1208 PF00330 Aconitase family (aconitate hydratase) MK1209 PF00682 HMGL-like MK1210 PF02641 Uncharacterized ACR, COG1993 MK1211 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MK1212 PF02673 Bacitracin resistance protein BacA MK1214 PF05167 Uncharacterised ACR (DUF711) MK1215 PF00180 Isocitrate/isopropylmalate dehydrogenase MK1217 PF00366 Ribosomal protein S17 MK1218 PF00238 Ribosomal protein L14p/L23e MK1221 PF00281 Ribosomal protein L5 MK1221 PF00673 ribosomal L5P family C-terminus MK1223 PF00410 Ribosomal protein S8 MK1224 PF00347 Ribosomal protein L6 MK1226 PF02769 AIR synthase related protein, C-terminal domain MK1226 PF00586 AIR synthase related protein, N-terminal domain MK1227 PF00753 Metallo-beta-lactamase superfamily MK1227 PF10996 Beta-Casp domain MK1227 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MK1228 PF00227 Proteasome subunit MK1229 PF09180 Prolyl-tRNA synthetase, C-terminal MK1229 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MK1229 PF03129 Anticodon binding domain MK1230 PF01761 3-dehydroquinate synthase MK1231 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MK1232 PF01458 Uncharacterized protein family (UPF0051) MK1233 PF00005 ABC transporter MK1236 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MK1236 PF00205 Thiamine pyrophosphate enzyme, central domain MK1236 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MK1237 PF08745 PINc domain ribonuclease MK1246 PF02629 CoA binding domain MK1246 PF00549 CoA-ligase MK1248 PF07664 Ferrous iron transport protein B C terminus MK1248 PF07670 Nucleoside recognition MK1248 PF02421 Ferrous iron transport protein B MK1248 PF17910 FeoB cytosolic helical domain MK1274 PF00753 Metallo-beta-lactamase superfamily MK1274 PF16123 Hydroxyacylglutathione hydrolase C-terminus MK1296 PF03787 RAMP superfamily MK1306 PF00534 Glycosyl transferases group 1 MK1306 PF13439 Glycosyltransferase Family 4 MK1312 PF01867 CRISPR associated protein Cas1 MK1314 PF18211 Csm1 subunit domain B MK1314 PF01966 HD domain MK1316 PF03787 RAMP superfamily MK1323 PF00753 Metallo-beta-lactamase superfamily MK1351 PF02514 CobN/Magnesium Chelatase MK1351 PF11965 Domain of unknown function (DUF3479) MK1362 PF00730 HhH-GPD superfamily base excision DNA repair protein MK1362 PF00633 Helix-hairpin-helix motif MK1364 PF13603 Leucyl-tRNA synthetase, Domain 2 MK1364 PF00133 tRNA synthetases class I (I, L, M and V) MK1364 PF08264 Anticodon-binding domain of tRNA MK1367 PF02834 LigT like Phosphoesterase MK1368 PF01434 Peptidase family M41 MK1368 PF00004 ATPase family associated with various cellular activities (AAA) MK1368 PF17862 AAA+ lid domain MK1368 PF06480 FtsH Extracellular MK1370 PF00303 Thymidylate synthase MK1371 PF01680 SOR/SNZ family MK1375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1376 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MK1376 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1378 PF00108 Thiolase, N-terminal domain MK1378 PF02803 Thiolase, C-terminal domain MK1379 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MK1379 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MK1381 PF00535 Glycosyl transferase family 2 MK1385 PF00148 Nitrogenase component 1 type Oxidoreductase MK1386 PF03600 Citrate transporter MK1389 PF02774 Semialdehyde dehydrogenase, dimerisation domain MK1389 PF01118 Semialdehyde dehydrogenase, NAD binding domain MK1391 PF00218 Indole-3-glycerol phosphate synthase MK1404 PF03143 Elongation factor Tu C-terminal domain MK1404 PF03144 Elongation factor Tu domain 2 MK1404 PF00009 Elongation factor Tu GTP binding domain MK1405 PF11965 Domain of unknown function (DUF3479) MK1405 PF02514 CobN/Magnesium Chelatase MK1408 PF01959 3-dehydroquinate synthase II MK1409 PF01791 DeoC/LacD family aldolase MK1411 PF02423 Ornithine cyclodeaminase/mu-crystallin family MK1414 PF07685 CobB/CobQ-like glutamine amidotransferase domain MK1416 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MK1418 PF02540 NAD synthase MK1422 PF05173 Dihydrodipicolinate reductase, C-terminus MK1422 PF01113 Dihydrodipicolinate reductase, N-terminus MK1424 PF00133 tRNA synthetases class I (I, L, M and V) MK1424 PF08264 Anticodon-binding domain of tRNA MK1426 PF00155 Aminotransferase class I and II MK1429 PF00919 Uncharacterized protein family UPF0004 MK1429 PF04055 Radical SAM superfamily MK1429 PF01938 TRAM domain MK1431 PF00149 Calcineurin-like phosphoesterase MK1433 PF00005 ABC transporter MK1433 PF09383 NIL domain MK1434 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family MK1435 PF04493 Endonuclease V MK1437 PF00266 Aminotransferase class-V MK1440 PF00330 Aconitase family (aconitate hydratase) MK1443 PF01494 FAD binding domain MK1447 PF03143 Elongation factor Tu C-terminal domain MK1447 PF03144 Elongation factor Tu domain 2 MK1447 PF00009 Elongation factor Tu GTP binding domain MK1449 PF03737 Aldolase/RraA MK1450 PF00719 Inorganic pyrophosphatase MK1451 PF00575 S1 RNA binding domain MK1458 PF00814 Glycoprotease family MK1460 PF02403 Seryl-tRNA synthetase N-terminal domain MK1460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MK1462 PF02926 THUMP domain MK1462 PF02568 Thiamine biosynthesis protein (ThiI) MK1463 PF03437 BtpA family MK1465 PF02441 Flavoprotein MK1470 PF01966 HD domain MK1471 PF00416 Ribosomal protein S13/S18 MK1472 PF01479 S4 domain MK1472 PF00163 Ribosomal protein S4/S9 N-terminal domain MK1473 PF00411 Ribosomal protein S11 MK1475 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MK1476 PF00572 Ribosomal protein L13 MK1477 PF00380 Ribosomal protein S9/S16 MK1480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MK1480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MK1481 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MK1481 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MK1482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MK1482 PF03466 LysR substrate binding domain MK1483 PF00809 Pterin binding enzyme MK1484 PF04127 DNA / pantothenate metabolism flavoprotein MK1484 PF02441 Flavoprotein MK1488 PF04055 Radical SAM superfamily MK1488 PF13186 Iron-sulfur cluster-binding domain MK1489 PF01933 Uncharacterised protein family UPF0052 MK1491 PF17827 PrmC N-terminal domain MK1491 PF05175 Methyltransferase small domain MK1492 PF03091 CutA1 divalent ion tolerance protein MK1495 PF10414 Sirohaem synthase dimerisation region MK1495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1495 PF14824 Sirohaem biosynthesis protein central MK1498 PF00696 Amino acid kinase family MK1500 PF00282 Pyridoxal-dependent decarboxylase conserved domain MK1502 PF08753 NikR C terminal nickel binding domain MK1502 PF01402 Ribbon-helix-helix protein, copG family MK1503 PF01931 Protein of unknown function DUF84 MK1504 PF01467 Cytidylyltransferase-like MK1508 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) MK1509 PF00710 Asparaginase, N-terminal MK1509 PF17763 Glutaminase/Asparaginase C-terminal domain MK1510 PF00117 Glutamine amidotransferase class-I MK1512 PF02603 HPr Serine kinase N terminus MK1512 PF07475 HPr Serine kinase C-terminal domain MK1516 PF03186 CobD/Cbib protein MK1520 PF00145 C-5 cytosine-specific DNA methylase MK1522 PF00528 Binding-protein-dependent transport system inner membrane component MK1523 PF08402 TOBE domain MK1523 PF00005 ABC transporter MK1524 PF00994 Probable molybdopterin binding domain MK1524 PF03454 MoeA C-terminal region (domain IV) MK1524 PF03453 MoeA N-terminal region (domain I and II) MK1529 PF07969 Amidohydrolase family MK1534 PF02514 CobN/Magnesium Chelatase MK1535 PF00696 Amino acid kinase family MK1535 PF13840 ACT domain MK1535 PF01842 ACT domain MK1537 PF01502 Phosphoribosyl-AMP cyclohydrolase MK1538 PF03129 Anticodon binding domain MK1538 PF13393 Histidyl-tRNA synthetase MK1539 PF01029 NusB family MK1539 PF01189 16S rRNA methyltransferase RsmB/F MK1540 PF06463 Molybdenum Cofactor Synthesis C MK1540 PF04055 Radical SAM superfamily MK1544 PF00586 AIR synthase related protein, N-terminal domain MK1544 PF02769 AIR synthase related protein, C-terminal domain MK1546 PF02492 CobW/HypB/UreG, nucleotide-binding domain MK1547 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MK1548 PF10414 Sirohaem synthase dimerisation region MK1548 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MK1548 PF14824 Sirohaem biosynthesis protein central MK1550 PF02602 Uroporphyrinogen-III synthase HemD MK1554 PF00742 Homoserine dehydrogenase MK1554 PF01842 ACT domain MK1554 PF03447 Homoserine dehydrogenase, NAD binding domain MK1558 PF00586 AIR synthase related protein, N-terminal domain MK1558 PF02769 AIR synthase related protein, C-terminal domain MK1558 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MK1560 PF03547 Membrane transport protein MK1564 PF00009 Elongation factor Tu GTP binding domain MK1564 PF03144 Elongation factor Tu domain 2 MK1564 PF11987 Translation-initiation factor 2 MK1564 PF04760 Translation initiation factor IF-2, N-terminal region MK1566 PF00692 dUTPase MK1567 PF00753 Metallo-beta-lactamase superfamily MK1570 PF16916 Dimerisation domain of Zinc Transporter MK1570 PF01545 Cation efflux family MK1573 PF07685 CobB/CobQ-like glutamine amidotransferase domain MK1573 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MK1575 PF01189 16S rRNA methyltransferase RsmB/F MK1575 PF01029 NusB family MK1576 PF13520 Amino acid permease MK1578 PF00318 Ribosomal protein S2 MK1581 PF01546 Peptidase family M20/M25/M40 MK1581 PF07687 Peptidase dimerisation domain MK1585 PF00596 Class II Aldolase and Adducin N-terminal domain MK1589 PF02222 ATP-grasp domain MK1591 PF00334 Nucleoside diphosphate kinase MK1593 PF00312 Ribosomal protein S15 MK1594 PF01725 Ham1 family MK1595 PF11987 Translation-initiation factor 2 MK1595 PF00009 Elongation factor Tu GTP binding domain MK1595 PF04760 Translation initiation factor IF-2, N-terminal region MK1600 PF00571 CBS domain MK1600 PF00478 IMP dehydrogenase / GMP reductase domain MK1602 PF04476 4-HFC-P synthase MK1604 PF01131 DNA topoisomerase MK1604 PF01751 Toprim domain MK1606 PF00202 Aminotransferase class-III MK1607 PF00701 Dihydrodipicolinate synthetase family MK1610 PF00288 GHMP kinases N terminal domain MK1610 PF08544 GHMP kinases C terminal MK1612 PF02978 Signal peptide binding domain MK1612 PF00448 SRP54-type protein, GTPase domain MK1612 PF02881 SRP54-type protein, helical bundle domain MK1613 PF02881 SRP54-type protein, helical bundle domain MK1613 PF00448 SRP54-type protein, GTPase domain MK1624 PF01750 Hydrogenase maturation protease MK1626 PF14667 Polysaccharide biosynthesis C-terminal domain MK1626 PF01943 Polysaccharide biosynthesis protein MK1627 PF01063 Amino-transferase class IV MK1630 PF01029 NusB family MK1630 PF01189 16S rRNA methyltransferase RsmB/F MK1631 PF00696 Amino acid kinase family MK1641 PF01728 FtsJ-like methyltransferase MK1643 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MK1643 PF07685 CobB/CobQ-like glutamine amidotransferase domain MK1645 PF01494 FAD binding domain MK1647 PF00113 Enolase, C-terminal TIM barrel domain MK1647 PF03952 Enolase, N-terminal domain MK1649 PF00156 Phosphoribosyl transferase domain MK1649 PF13537 Glutamine amidotransferase domain MK1654 PF00005 ABC transporter MK1655 PF12704 MacB-like periplasmic core domain MK1655 PF02687 FtsX-like permease family MK1656 PF13785 Domain of unknown function (DUF4178) MK1658 PF02811 PHP domain MK1658 PF14579 Helix-hairpin-helix motif MK1658 PF07733 Bacterial DNA polymerase III alpha NTPase domain MK1658 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MK1662 PF00162 Phosphoglycerate kinase MK1663 PF01418 Helix-turn-helix domain, rpiR family MK1663 PF01380 SIS domain MK1665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MK1666 PF02142 MGS-like domain MK1666 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MK1667 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MK1667 PF14572 Phosphoribosyl synthetase-associated domain MK1670 PF12804 MobA-like NTP transferase domain MK1671 PF02654 Cobalamin-5-phosphate synthase MK1673 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MK1673 PF02874 ATP synthase alpha/beta family, beta-barrel domain MK1674 PF01813 ATP synthase subunit D MK1678 PF17757 UvrB interaction domain MK1678 PF00271 Helicase conserved C-terminal domain MK1678 PF04851 Type III restriction enzyme, res subunit MK1678 PF02151 UvrB/uvrC motif MK1678 PF12344 Ultra-violet resistance protein B MK1680 PF02374 Anion-transporting ATPase MK1682 PF01139 tRNA-splicing ligase RtcB MK1682 PF01139 tRNA-splicing ligase RtcB MK1683 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MK1683 PF01588 Putative tRNA binding domain MK1683 PF03484 tRNA synthetase B5 domain MK1683 PF03483 B3/4 domain MK1683 PF03147 Ferredoxin-fold anticodon binding domain MK1684 PF05401 Nodulation protein S (NodS) MK1687 PF00005 ABC transporter MK1688 PF00528 Binding-protein-dependent transport system inner membrane component