        recF NONE
        gyrB    6144 ..    6167 + -15.4  -5.40474   CTCTCTGAGACCTGA          TAAAGCCCGG ATTT CCGGGCTTTA           TTTTTTTCCGGCGAT 100 50
        nagK   15237 ..   15264 + -14.3   -3.0497   GCTGACCGGCATATA        TTTACCGCCTG CGGATA CAGGCGGTAAA         TATTAAAAATAATAT 100 36
JA116_RS00060   16471 ..   16485 +  -5.6  -2.87931   GACGCTGCGCTACAT               TCCGGA TCA TCCGGC               TATATGACCGGTACA  53 4
JA116_RS00065   18432 ..   18448 + -10.9  -3.83502   CGTGCTGCCCGTTTG              CCGGTAT TTA ATACCGG              TTTGCTGTGCGGCTG  84 56
        asnA   35981 ..   35998 +  -4.8  -4.21908   GTAATGGGACAGGGC             TACCGC ATGGAA GCGGTG              TTTTCCCTGCTGCTG  64 160
        rbsD NONE
        rbsA NONE
        rbsC NONE
        rbsB   43771 ..   43799 + -13.1  -3.30124   AGACTAACGATATCA        GCCTCCCCGGTAC TGT GTACCGGGGAGTA        TTGTCAGCAATAAGG 100 34
        rbsK   44734 ..   44748 +  -3.4  -3.24747   TGAAATTGATGCTTT               CCTTGC GGA GCGTGG               TTAATACTGTGGCGA  47 7
        rbsR   46213 ..   46228 +  -3.2  -4.08767   CGTAGCGGCGCAGAA              TCTGAG TAAC CGCAGA               TTTTGCCAGAATAGA  58 480
JA116_RS00210   50009 ..   50023 +  -5.6  -2.64973   AAATGAGCAGAGAGC               GTCTGC GAA GCTGAC               TAATGTCCCCTTCGT  52 87
JA116_RS00215   50139 ..   50169 +  -7.1   -2.7362   GTCATCTGCAAATAA      TGATTAAGCTGATT CAAG AGTCAGCTTAA-CA       ATTATGCTCTTTAAC  59 61
JA116_RS00220   53209 ..   53219 +  -6.8  -4.27316   GGCTTAACCTGACAA                 CACC GAA GGTG                 TTTTGAGTTGAGAGA  74 30
         rrf   53442 ..   53474 + -15.7  -2.71712   CCAGGTTATTATTAA      GTGAAGAAGCCACCC TTT GGGTGGCTTTTTTGC      GTTTGAGCGAAAGAA 100 35
        yghU   54491 ..   54519 + -17.6  -2.61628   ATTGATATTTCACCC        TTTCCCGGCAGA TGATT TCTGCCGGGAAA        TCCATTCCTGTTATT 100 36
JA116_RS00240 NONE
JA116_RS00245   58566 ..   58576 +  -2.4  -5.10933   GCTGGTACTATCCAG                 TCCG CCC CGGC                 TTTTATTTTGGATAA  74 239
JA116_RS00260   62650 ..   62665 +  -3.3  -3.51124   GTAATCCGCGGCAAA              TCATC CGGCGT GATGA               TGTTTCATCGTTAGT  49 37
JA116_RS00265   63202 ..   63230 + -10.1  -4.57218   TTTCGTTATTTTCAG        CCGGCAACCGGTA TTT TTCCGGGCGCCGG        TTTTCATTCTCTTAT 100 99
JA116_RS00270   63724 ..   63740 +  -3.7  -3.18571   GTTCTTAATTCCCGG              TTCGC ATCCATG GCGAA              TATATCTTTCACCCG  48 91
JA116_RS00275   65961 ..   65999 +  -3.2  -2.67055   CCCGTTCTGTTGTCG   TTCAGACCAAATACAGCT GGT AGTTATGTTTGAACTGAA   TGATATCCGTGTTGT  42 3
JA116_RS00280   66743 ..   66758 +  -3.2  -2.67401   AACAACGAAAAGTGG              CAGTCG TATG CAACTG               ATGTTATTACGTTTA  42 9
JA116_RS00285 NONE
        fhuB   69674 ..   69701 +  -4.8  -2.93585   GGATACAGCCGAAAG        GCAACTACGGCT TCCC GGTTGTAGTAGC         TGGTTTCGGATATAC  50 56
        rlmF   71109 ..   71121 +  -2.7  -4.44974   TATATCCGTGATCAA                TTAAG ATA CTTGA                TTTTATGACGTTTGA  61 281
        prlC NONE
        rsmJ   76207 ..   76220 +  -5.2   -4.7254   TTGCGCCTTCCGCCA               CGGC TTTAAC GCCG                TTTTTGATCAGCACT  75 466
        uspB   78745 ..   78764 + -12.2  -4.35524   GGATACGAAAAAAAA            GCCTGACA CATG TGTCAGGC             TTTTCAGTTTCAGAG 100 50
JA116_RS00345   81956 ..   81972 +  -9.4  -5.11033   TCCAGTGTTTATTTA              GCCAGC CCAGT GCTGGC              TTTTTTCCCCTTATC 100 240
JA116_RS00350   82354 ..   82368 +  -5.8  -2.78712   TCCTCGCAATGTTTA               TTCAAA TTT TTTGAA               TCCTTGCGTTAAACC  53 44
JA116_RS00355   83154 ..   83177 + -13.8  -2.77148   ACAATAAAACAGAAA          GCCCCGGATC ATCT GACCCGGGGC           TACTGTGTTGCTCAC  95 34
        nudE   89501 ..   89518 + -12.7  -2.87444   CGATTGAAAAAAAAA             GGCTGCC CTCA GGCAGCC              CTTGTCTGTTTATCA  89 109
JA116_RS00390 NONE
JA116_RS20150   93903 ..   93917 +  -5.6  -2.80935   ATTTGAGGCGCATTA               TCCGGC GCT GGCGGA               TCTGCTGGATACCCT  53 35
JA116_RS00405   95350 ..   95408 + -11.9  -2.60032   CCTGATTTTCAGATC GCGCCTTATGTTTCTGT-ACAGCTCCTG TTTG CGGGAGGATTCACGGAAATATAAGGCGC GGTTTTTCGCAGGCG  83 235
        aroK   96157 ..   96181 +  -4.3  -4.66537   TGCAAATCAAATCAT          TGAACTGTTAG AAA CCAACAGTTAA          TTTTATATTACCGGC  68 1
        aroB   97370 ..   97390 + -11.1  -2.90232   TTACACTACGCATTA            TGACGCGCG CAC CGGGCGTCA            GTTCTCTTCTGTTAT  77 100
JA116_RS00420   98410 ..   98420 +  -5.4  -3.88498   TAAACACGGATTCCG                 TCAG GTG CTGA                 TTTGCTGTCTGAAAC  61 38
         dam   99304 ..   99321 +  -6.9  -2.63073   TACCGCGGACAGTAA             GCCGTTG AACC CGGCGGC              GTCTTATTAAGAGGA  56 26
         rpe NONE
JA116_RS00435 NONE
        trpS  101792 ..  101813 +  -4.3  -6.02914   ATAAACTGAAAAAAA           GCGCCCC GGAATGAA GCGGCGC            TTTTTTTTATATCCG 100 52
JA116_RS00450  105636 ..  105650 +  -2.1   -3.2056   GGATGGGGTGTATCA               GCAGA ATGTG TTTGC               TTACTACCTCTCCAT  43 200
JA116_RS00460  106958 ..  107011 + -12.6  -3.93367   CTGTCCTGATACAGT CAGCGCGTATCCTGTTACTGTTTTC CGTCC GGAAACCGTGGCAGGATACGC-CGG TATTTTATTGCGGGG 100 32
        dmsD  107673 ..  107698 + -18.3  -5.40072   GCATCAGAGTAAAAA         GCGCCTCCGGT CTGC ACCGGGGGCGC          TTTTTTTACGGCGGA 100 50
JA116_RS00475  109054 ..  109081 +  -8.4   -2.6927   TAACCGGCTGTCCGT        TACTCTCCGCAG AGGA CTGCGGAGAACA         TCATGTATCACGACT  63 97
JA116_RS00480 NONE
JA116_RS00485  112668 ..  112678 +  -8.2  -2.72031   GCAGAGACAACCGCG                 CCGG ACA CCGG                 TGATGTCATTGTGGT  63 201
JA116_RS00490 NONE
JA116_RS00495 NONE
JA116_RS00500 NONE
JA116_RS20155 NONE
JA116_RS20160  117643 ..  117659 +  -5.9  -3.62096   AACCGAATAACCGGC              GGTTGAA ATC TTCAATC              TTTCCGCTGGTCAGG  60 31
         acs NONE
JA116_RS00525 NONE
JA116_RS00530  123380 ..  123406 +   -18  -5.35224   CTGACAGAGGTGACA         GCGCGGTTTCCG GCC CGGGGACCGCGC         TTTTCTTTTTCTCCG 100 37
JA116_RS00535  124077 ..  124103 + -13.6  -2.64616   TCAGCTGAATACCGG         CCGCCGCCCGGA TAA TCCGGACGGCGC         TGATATCAGTCAAAC  93 33
JA116_RS00585 NONE
JA116_RS00590  137613 ..  137648 + -12.7  -4.06903   ATCATAATTATTGGT    GTTGTCACTCATCTG TCCTGC CGGATGAGTGACATC     TTTGGTTTACCAGTT 100 34
        uxuA  139159 ..  139173 +  -5.6  -2.78384   ATCTCTTCCGCAGCC               TGCTCC CCG GGAGCC               TGTAATGGAAAAGAA  53 74
JA116_RS00600  140654 ..  140664 +    -4  -2.54371   CTGTAATCCCGGAGA                 GTTT ATG AAAC                 AGTTTCTTTGCGAAG  45 35
        uxaC NONE
JA116_RS00610 NONE
JA116_RS00615  143713 ..  143739 + -15.9  -2.74926   GCATTTTTATTGTTC         CGGCAGCGGAG CCTGT CTCTGCTGCCG         TCCTGTCTGCTTTCT 100 41
        atoC  147141 ..  147164 +  -9.6  -5.95286   CATTTTAAATAAAAA          CACGGTGTAA ATAA TTTCACCGTG           TTTTTTGTTTTTACT 100 81
        atoD NONE
JA116_RS00635 NONE
JA116_RS00640 NONE
JA116_RS00645  151272 ..  151298 + -13.7  -5.10077   ACCGCCGTATATTCA         GCCGGTGTCAG GATAA CTGTCACCGGC         TTTTTTGCGCTGTTT 100 53
JA116_RS00650  152390 ..  152433 + -12.5  -4.63044   GCGGTGCTGAGTTTT TTAACTTTCCGGAACCGGT ATTGTG ACCGGTTCCGGGGTGTTAC TTTATTTCTGTCAGT 100 282
JA116_RS20165  155904 ..  155917 +  -3.8  -2.91735   ACATCAGGCAGAGTT               TCGC ATTAAA GCGA                TGTGTCGCGTGTTGA  46 60
JA116_RS00665  157010 ..  157037 +  -8.6  -4.93547   AAATAATAATTACAT        CTATATGATAAG GTTA CTTATCATGTGG         TTTTTCCTTAATTGC 100 304
JA116_RS00670  158833 ..  158859 + -10.8  -2.84051   TAACCCTGGTTTTCA         TCCCCGCCGG CAGCTGT CCGGCGGGCA         GTTTCATACGCATCG  77 38
JA116_RS00685  163482 ..  163500 +  -3.1  -3.76771   CCTGCCTTGTGCTAT             CATCCTG ATACA CAGCATG             TTGTATTACTCTTAT  53 142
JA116_RS00690  164579 ..  164602 + -16.8   -3.8822   TTTCTGATAAAAAAA          GCCCGGTAAC ATCA GTTACCGGGC           TTTGCATTTGCTGTG 100 51
        poxB  168229 ..  168244 + -10.4  -5.53991   AGCAGAGGTAAAAAA              TGCCGC ATGT GCGGCA               TTTTTTTGCTCAGTA 100 44
JA116_RS00710  170963 ..  170976 +  -8.1  -5.76633   AACCGGTCCGGAAAA               GCGCT GAAA AGCGC                TTTTTTTGTGTCTGC 100 45
JA116_RS00715  171796 ..  171840 + -13.7  -3.46509   TCCCGGCGCTGAGGT GATAAAAAAACAGACCGGCTT TGT GAGCCGGTCTGCGTTGTTATC TTACTGTTCTTCCCG 100 29
        bioH  177841 ..  177866 +  -4.6  -4.12198   GGTAATCAGAAAAAA         GCCGGTCAGT TTAATC ACCAACCGGC          TTTTGCCGAATTCTG  63 36
        greB  185138 ..  185152 +  -4.2  -3.18264   ATGTCATTTTGTCTA               TCCGCT ATC AGCCGA               TTGCTGAATAGGCAC  49 0
        ompR NONE
        envZ  187308 ..  187335 +    -7  -5.32396   TGTGGCTGTCATAAA        TCCCTGCGGTAA GCGA TTATCCCGGGGA         TTTTGTTTTTAATCT  89 69
        pstS  188640 ..  188662 + -19.2  -3.06696   GAATTACCAGTAATT           GATCCCCCCG TAC CGGGGGGATC           TGTGTTAAAGACGGA 100 65
        pstC NONE
        pstA NONE
        pstB NONE
        phoU  192181 ..  192200 + -11.4   -4.2687   CCCGTTTTGATTTGA            CCCTGGAG TTAA CTCCGGGG             TTTATACTTTTTAAA 100 84
JA116_RS00820  192507 ..  192529 + -11.3  -4.27584   AATCCGTAAGGCAAA           TGCCGGTCA TCACC TGACCGGCG           TTTTCAATTCAGCGT 100 32
JA116_RS00850  199678 ..  199695 + -11.3  -3.26546   TATTATCTGATTCAG             GCCTCAC TCCG GTGAGGC              TTCCTGCATTTCTGC  86 49
JA116_RS00855 NONE
JA116_RS00860  201261 ..  201284 +  -5.3  -4.08767   TTTGATCAGTGACAA          TCCCGGTACA GTTAA TG-GCCGGGA          TTTTCCCGCAATGAA  65 42
JA116_RS00865  202737 ..  202758 + -12.3  -5.77988   TCAGATGAGAAAAAT           CCGCG-CGGT GAT ACCGGCGCGG           TTTTTTTGTCTCTGT 100 54
        yihI  205005 ..  205042 + -16.5  -3.66784   CCGGCGGTACTGCAT   TAAAACCGGCGTAACAG GCGA CTGTTATGCCGGTTTTC    TTATATTCAGCCTAC 100 62
JA116_RS00880  205526 ..  205536 +  -3.2  -2.98719   CTATGTCACCGGCAC                 CGGA TTG TCTG                 TCTGTGGTGTGATCA  44 41
        hemN  207027 ..  207056 + -14.4  -3.02293   TGATTTAATCTGCTT       CCGGGGTTGATG CGGTGT CATCAATCCCGG        CTTCTTTCAGTTTCC 100 33
        typA  213513 ..  213540 +   -17  -5.03994   GTTTTGATTCATGCC        ACTCAGGGCGCC TCCG GGCGCCCTGAGC         TTTTTCTGTCTGCCG 100 53
        yihX  214316 ..  214330 +  -2.8  -4.29369   TTTTCCGCAGAAGTG               ACTGAA TAA TTCAGA               TTTGATTATTTTTTA  59 17
         dtd  214779 ..  214790 +  -2.2  -2.78596   ATGGTCCGGTCACTT                TCTG GCTG CAGG                 TATGATACAACAGTC  41 9
        fabY  215960 ..  215977 + -12.7   -4.2074   ACCGATAAAGAAAAA             CAGCGCC TTAC GGCGCTG              TTTCTGTATTAGCAG 100 222
        gltS  220773 ..  220790 +  -9.1  -5.32944   CGCTTAAGCAGGCAA             GCCACCT TCCG GGGTGGC              TTTTTTCGTTATACG 100 48
JA116_RS00970  229065 ..  229079 +  -2.1  -4.14392   ATTATGAGCCGTTTC              CG-CTG CTTC CAGGCG               TTTTACCCGTTCCGC  56 79
        glyQ NONE
        glyS  233589 ..  233613 + -15.1  -5.14563   AGTGATGTTACAGAA          TAGAGCCCGGT CTG ACCGGGCTTTA          TTTTTTACTGACCAG 100 54
JA116_RS01000  235066 ..  235084 + -10.3  -5.46698   CCATATTAAGAAAAA             CCCTGCT TTTAC AGCAGGG             TTTTTTGCTTTTCAG 100 38
JA116_RS01015  238842 ..  238873 + -13.6  -2.87211   GAAATCAGTGTTACC      GGTCTGCCGCCTCC TCCG GGGGGCGGCAACCC       TGTATCGAACCGCAT  93 49
        dppB NONE
        dppC NONE
        dppD NONE
JA116_RS01035  242992 ..  243017 + -12.7  -4.84527   AACTGAACACAAACA         GCGATAATGGA GGGC TCCGTTATCGC          TTTTTGCTGTCTGGG 100 79
JA116_RS01040  243887 ..  243897 +  -8.2  -2.77118   AATCAAAGGGACGTC                 CCGG AAG CCGG                 TCAGTTTTGCCTGTG  64 76
JA116_RS01045  245712 ..  245730 + -11.8  -5.65177   AATATGAAATAAAGA             GGGTATCT GTA AGATACCC             TTTTTTTATGACTAT 100 52
JA116_RS01065  248732 ..  248744 +  -6.2  -5.45802   GCAACCGAAATTTAA                CCGG GCCTG CCGG                TTTTTATTTTCAAAA  91 26
JA116_RS01075  250205 ..  250230 +  -8.2  -3.70043   CCGGAATAATTCGTT         TCCGCTGCGG GCATGA CAGCAGCGGG          TGTTTATGTATTGAC  73 32
        gorA  251644 ..  251670 + -13.1  -6.25242   ATTTAATAAATGAAA         CCGGCTGTATG CATGT CATATAGCCGG         TTTTTTTTTACTTAT 100 49
JA116_RS01085  252531 ..  252560 +  -5.1  -4.59511   CGTAAATAGTAGCTG       TCGCTGTC-TTCTT CTG AAGAGTGACAGCCA       TTTTTCAGCAGTATT  75 265
JA116_RS01135 NONE
JA116_RS01140 NONE
        dsbA  264132 ..  264153 + -14.5  -5.21709   CTGTATCTCCCGGAA           GCAATGGCG GTAA CGCCATTGC            TTTTTTACTATCCAC 100 50
        polA  267297 ..  267336 + -12.2  -3.51976   CGTTGGCCGCACTCA  GAAATCCGGGTCACATAC TGGT GTATGCTCCCCGGATTTC   TTCCTTTGCCGCCTT  91 70
        ppiA  271198 ..  271214 +  -5.1  -2.93382   TGTCAAACTCCCTGA              TAGTCTG AAT CAGACGA              TATCTGCCTCTGCGA  52 94
JA116_RS01180  272369 ..  272385 +  -6.5  -4.87133   AAAGCTGATAAAACA              CACGTTC GCG GAACGGG              TTTTCTTTGCCAACT  80 422
JA116_RS01190  273676 ..  273693 + -12.7  -4.30576   TTAAGAAAAGAAAAA             CAGGCGC AATT GCGCCTG              TTTTGGTGATAAAGG 100 50
JA116_RS01200  275097 ..  275119 +   -15  -5.66684   ATTTTTGAACATAAA           CCGGGTAATA CAT TATTACCCGG           TTTTTTTATCGCTTG 100 61
JA116_RS01220 NONE
JA116_RS01225 NONE
JA116_RS01230  278724 ..  278742 + -14.6  -4.99035   AATAATCATGAAAAA             CAGACCGC ATT GCGGTCTG             TTTTTGTATCACTCC 100 55
JA116_RS01245  282292 ..  282320 +  -3.7  -3.72576   GCGGGTTCCTGAAGA        TCACCTCGTCCGC AAA GTGGACGTCGTCA        TTTCATCAAGGAACC  53 54
        kefG NONE
        kefB NONE
JA116_RS01295  295094 ..  295106 +  -2.7  -3.56862   ATAACAGGCAACGGT                TTTTC ACA GAGAA                TTTGGGGGAATTTGT  48 37
        slyD  295849 ..  295896 + -20.3  -4.09519   AACCCGCGTCTGAAC CGGACA-AAAAAAAGCGCATTC CTGAC GGATGCGCTTTTTTTATGTCCG TTGTTTATCAGTAGT 100 42
        fkpA  297154 ..  297173 + -10.7  -5.27335   CGGAAACTGACAAAA            CCCGCAC TTTTCT GTGCGGG             TTTTTGTTTCCGCGG 100 54
JA116_RS01315 NONE
        tusD NONE
        tusC  298922 ..  298937 +  -5.4   -4.3586   GAAACTGGCGGCATT              TGACGC CGTG GTGTCA               TTTTGATCTACATAC  68 4
        tusB  299305 ..  299316 +  -3.6  -4.78848   TCAGCAATAAAATTT                CGCG TCCT CGTG                 TTTTGTCTTTGACAG  70 77
        rpsL NONE
        rpsG  300312 ..  300341 +  -3.5  -2.75498   TAACAAGGCGTTCGC       ACACTACCGTTGG TAAT CAAACCGTAGTGA        ATTGTGTATAGGGTA  45 10
        fusA  302535 ..  302549 +  -6.4  -3.72642   CGTAATGCAAAATAA               TCGGTA ATT TACCGG               TTTAACTCGTTAATT  63 26
         tuf  303821 ..  303838 + -11.3  -4.93318   TAATAATCCTAAAAA             GGGCATC AAAT GATGCCC              TTTTTCTGCGTTGTC 100 50
        secE NONE
        nusG  305025 ..  305063 + -11.2  -4.59853   TCTTTTCCGGACTTG   CAAAGGGCGGGAAATT TATCTAC AATTTCGCGCCTTTTG   TTTTTCAGGGGTTCG 100 46
        rplK NONE
        rplA  306311 ..  306348 + -10.8  -3.97911   ATAATAAGCACTTTA   CATTGGG-GTCAGGTTT CTGTA GAATCTGACGCCCAATG   TTTGCTGTATTTGAT  90 50
        rplJ  307162 ..  307172 +    -4  -2.91264   TCTGAATTTTAGGAA                 CATA TCG TATG                 TCTATCACTAAAGAA  47 84
        rplL  307572 ..  307597 + -15.5  -4.63527   CTGAAAATGGCTGAT         GGCTGGTGACT TATT GGTCACCAGCC          TTTTTGCGCTAATGC 100 62
        rpoB  311947 ..  311959 +  -4.8  -3.53012   GGTACACGGGCAGCA                CCAG TAAAT CTGG                TTTAAGGGACAGACA  55 61
        rpoC  316275 ..  316295 + -15.5  -5.26316   GTAACTGACTGAACA            GCCCTCCTT TTT AAGGAGGGC            TTTTTTGTGCAGTAC 100 54
JA116_RS01395  317668 ..  317695 + -17.2  -5.41143   TTATATAACAACTCA        CGGCCTGATAAT CACG ATTATCAGGCCG         TTTTTTTACGGAATA 100 49
JA116_RS01405 NONE
JA116_RS01410  321333 ..  321350 + -12.7  -4.68994   TAGACTAAAAAACAA             GGCCGGT CTTC ACCGGCC              TTTTTACATCATCGT 100 33
JA116_RS01445  328898 ..  328933 + -13.3   -3.5511   GCTGCCTGACCGGGA    TGATACCCGCTGACG TATCTT CGGCTGCGGGTATCA     TATTTATCAGTGACG 100 32
        nudC NONE
        hemE NONE
         nfi NONE
JA116_RS01495 NONE
        hupA  338251 ..  338265 +  -7.8  -4.71426   AACAGATTGATAGAG               GGGGAT TTC GTCCCC               TTTTGTTGATCAGAC  86 53
JA116_RS01505  338907 ..  338939 +  -7.7  -3.65603   TTCTGTAAATGGGAA      CCTACGGAAGATTCA CTG TAAATCTCCCGCAGG      TTATTAACGCTGTTT  70 5
JA116_RS01520 NONE
JA116_RS01525  344147 ..  344158 +  -2.2   -3.6682   ACTGATACTGCGTTG                CG-GC TCC GCTCG                TTTACGTCAGTAAAC  49 47
JA116_RS01530  344347 ..  344384 +  -9.3  -3.56837   CTGATATCTGAACAA   TAATTCAGAGTTTACCG GAAA CGGTATGCTGTGAATTA    TTATGCTCTTTAACA  76 45
JA116_RS01535  347547 ..  347557 +  -6.8  -4.27316   GGCTTAACCTGACAA                 CACC GAA GGTG                 TTTTGAGTTGAGAGA  74 30
         rrf  347815 ..  347825 +  -2.4  -2.80398   CAGTCACACAGAGAT                 ACGC GGA GCGG                 TAGTTCAGTTGGTTA  41 72
JA116_RS01545  347907 ..  347928 + -14.5  -5.51612   GCCAACAAACATTAA           CCCCGATAG GAAA CTATCGGGG            TTTTGTTTTTTGTAT 100 37
        metA  349030 ..  349060 +  -9.7  -2.82834   CATGATGTCTTTATG      CT-GCGGCACCGGC AACA GCCTGTGCTGCCAG       TGTGGTAATACGATC  72 83
        metH  355923 ..  355936 +  -2.3  -4.11751   TCTTGTTTTCGTCCG               GGAGA ACTT TCACC                TTTTGACAGGTTAGT  55 429
JA116_RS01570  357195 ..  357219 + -17.2  -5.93809   TTCGTGTAATTTGAT          CGCCTGACGC TGACC GCGTCAGGCG          TTTTTTTTATCCGCA 100 423
         pgi  360579 ..  360603 + -12.8  -4.85782   CGTTTTATAAACAAA          GCCGCCCTGC ATTGC GCAGTGCGGC          TTTATTTTTAGCAAA 100 63
        ubiC NONE
        ubiA  362426 ..  362436 +  -5.4  -2.84125   CATTCTGTACTGTGA                 GACT TGC AGTC                 ATTTCACTGTGTACA  50 353
JA116_RS01595 NONE
JA116_RS01600  364780 ..  364801 + -13.1   -5.9873   ACCGGCAATAAAAAA           GGAGATTGG CTGC CCAATCTCC            TTTTTTTTGTACTCA 100 140
JA116_RS01610  367856 ..  367868 +  -3.3  -3.59979   CGTAACACGTATTTT                CCTCA TGT TGTGG                TTTCCAATCCCGGAA  51 67
        lexA  368587 ..  368615 +    -6  -5.61881   GTATCCGCTTAAAAA       CCACAGTATGCCG GAGA CGGTC-ACTGTGG        TTTTTGTTTTTCAGC  95 66
JA116_RS01625  369804 ..  369829 + -14.7  -2.66787   TAAACCAGACCGGCA         TGCAGCGCCAC ATCA GCGGCGCTGCA          TCATGTCAGTGTTCA 100 38
JA116_RS01640  372411 ..  372439 + -17.6  -5.46698   TCAGTCCCCGGACAA        TACTCCCCGGAA CAGTC TTCCGGGGAGTA        TTTTTTCGTTTTACC 100 43
        dusA  376431 ..  376459 + -18.9   -4.3208   AATCAGTGATAAAAA        TGCCCGCCGTTTC TCA GAACCGGCGGGCA        TTTTACATTCTGCGG 100 43
        dnaB NONE
         alr  380266 ..  380310 +  -2.3  -3.66288   CGAATAAAATGTGAC GCGATATGTTCTGATAGTGA GAAAAA TAACAATCAGGA-GTATCGC TTGTGTTCGAACATG  49 34
JA116_RS01675  381918 ..  381939 + -14.5  -4.11216   AACGGATAAAAAAAA           TACCGCAGC GGGC GCTGCGGTA            TTTTCAGAATCAGAA 100 434
JA116_RS01690  385620 ..  385635 +  -2.4  -5.77988   TATTTCATATAAAAA              ATCCGC GTTG GCGGGA               TTTTTTTATATCTGT  85 54
        ilvB NONE
        ilvN  390394 ..  390411 + -12.7  -5.24531   AGTAGTGTGATAAAA             CCGGGCT GATA AGCCCGG              TTTTTTGTCCGGGCT 100 36
JA116_RS01720  391893 ..  391920 +  -2.6  -5.41746   TGCTGATCAGTAACC        TGGTGCACTGAC GGCG GTCAGCGCAGGA         TTTTTTTAGCGCATT  80 15
JA116_RS01730  394423 ..  394451 + -16.8  -5.74122   TGAGAAGATAAAATA        GCAGTGGCGGAT AACGC ATCCGCCGCTGC        TTTTTTTGTATGATA 100 137
JA116_RS01735 NONE
JA116_RS01740  397469 ..  397484 +  -4.6  -3.62572   GGGCCAGCGGATGAT              CCGGTG CCAC CACCAG               TTTCACCTCATAATC  57 359
        metE  400404 ..  400423 + -13.6  -4.31766   ATAAAGAAGAAAAAA            GCCGGTCA GTGA TGACCGGC             TTTGTGTTATGTGCT 100 56
         udp  403406 ..  403434 + -17.5  -6.17184   GGTTTCATGAATCAG        CCGTATCACCGGA TTT TCCGGTGGTGCGG        TTTTTTTTTAATCAT 100 49
JA116_RS01770  404378 ..  404390 +  -3.3  -4.56153   CGTGAACATGAGTTC                TGGGC ATT GCCGA                TTGTTTTTGTGCTGG  63 106
        rmuC NONE
        ubiE NONE
JA116_RS01790 NONE
        ubiB  409545 ..  409556 +  -4.4  -3.28866   GTTAAGACAAGGTTT                CAAC CTAT GTTG                 TGTATTTCCGTATAC  51 48
        tatA  409890 ..  409905 +    -4   -4.2717   AAGAGCAGGTATAAC              CCG-TGT TTG ACATCGG              TTTTGGTGAACTGAT  63 27
        tatB NONE
        tatC  411224 ..  411241 +  -7.7  -5.63517   CGCGTCAGATAAAAA             CCGCCTGT AAT AC-GGCGG             TTTTTTGTTTCCGGG 100 49
        pepE  412716 ..  412735 +  -5.7  -4.15565   TTGTAACAGTGGACG            GGATTCC TATAAT GGAGTCC             TTTTCACCTGCTGAC  68 50
        ubiD NONE
         fre  415025 ..  415067 + -10.7  -4.08948   GTATCAGAGACGTAT CAGCGACGTATTGTGCT GTGTGGTGA AGCAGAAAACGTCGCTG TTGTTTATCAGATTA  93 103
        pepQ  420207 ..  420228 + -12.3  -4.15222   AAATGAATATCCCGA           TGCCCGGCA CCAT TGCTGGGCA            TTTGTTGCAGGGCGT 100 169
        trkH  422140 ..  422155 +  -5.4  -2.71483   TGCTGGTATTACTGA              CGCC-GA CTT TCTGGCG              TGATTAACGGAGTGT  49 3
        hemG  422721 ..  422733 +  -4.8  -3.40403   GACGGGCTTTTTGCC                CGGT AAATC ACCG                TTGTGGTGAAAAAAG  53 48
JA116_RS01865  424722 ..  424738 +  -2.1  -2.92157   AAAATGAGCAGAGAG              CGTCTGC GAA GCTGACA              TATGTCCCCTTCGTC  42 86
JA116_RS01870  424853 ..  424883 +  -7.1   -2.7362   GTCATCTGCAAATAA      TGATTAAGCTGATT CAAG AGTCAGCTTAA-CA       ATTATGCTCTTTAAC  59 61
JA116_RS01875  428050 ..  428060 +  -6.8  -4.27316   GGCTTAACCTGACAA                 CACC GAA GGTG                 TTTTGAGTTGAGAGA  74 30
         rrf  428282 ..  428314 + -15.7  -2.71712   CCAGGTTATTATTAA      GTGAAGAAGCCACCC ATT GGGTGGCTTTTTTGC      GTTTGGGCGAAAAGA 100 35
JA116_RS01895  433445 ..  433472 + -15.7  -4.56314   TGCTGATAAAACAAA        CAGCCATACCG TGTCAC CGGTATGGCTG         TTTTCATTGTATTAA 100 47
JA116_RS01905 NONE
JA116_RS01910 NONE
JA116_RS01915 NONE
        phoA  438888 ..  438910 +   -17  -5.94214   TTTCAGCAGTGGCTG           CCGCCGGTAC TCT GTGCCGGCGG           TTTTTTTATTATCTT 100 137
JA116_RS01925  441100 ..  441132 +  -8.6  -5.28315   GACACATTAATTATA      GGTGTATGATTTTA AGGTA TATAATCATGCACC      TTTTTTGCATTTTAT 100 302
JA116_RS01935  441813 ..  441851 +  -3.9  -3.53712   TTAGCGGTTTTATCC   GCGCCGTCAATAATTTT TTATC AAAATTGGTGACTTCGC   TTAATTATTAGGCAT  51 347
JA116_RS01955 NONE
        rimI  443871 ..  443883 +  -4.1  -2.91264   TAATTTTCTGCATGC                TACCG TGG TGGTA                TATATCCATCACAGG  47 101
        fliB  445142 ..  445152 +  -2.4  -4.66264   CCTGCTTGATAACTG                 AGCC CGG GGCA                 TTTTTCAGGCTTTTG  63 25
        prfC  447029 ..  447044 + -11.8  -6.06723   TGTCAGCAATCTCAG              CGCGCC TCCG GGCGCG               TTTTTTTTTACACCG 100 197
JA116_RS01975 NONE
JA116_RS01980  448635 ..  448647 +  -3.5  -3.22298   AACCGGCGGACTGAA                TAAAT GCA ATTTA                TTGATACTCACTGCC  48 27
JA116_RS01985  449565 ..  449581 +  -5.8  -4.56597   TAAATATCCGTCAAT              TCCCGG CTTCT CTGGGA              TTTTTCAGAGAAAAA  73 158
JA116_RS01990  451068 ..  451096 + -21.9  -4.35742   TGTAACTGCTCCTCC        CGCACAGGTGAAC CCG GTTCACCTGTGCG        TTTTACTGATTCGGT 100 36
        deoC  452291 ..  452312 + -13.7  -5.26875   TATTAATCACGTTTA           CCGGGCTGC TTTT GCAGTCCGG            TTTTTTGATTAACCC 100 35
        deoA  453758 ..  453770 +  -4.1   -3.2121   TGACACAGGAGAGAA                GTATG AAA CGTAC                ATTTATTATGGTGCT  49 86
        deoB  454999 ..  455019 + -12.6   -3.8698   TGTGTTTCTTTTTTC            GGGCAGAC AGTCA GTCTGCCC            TTTCCCTTTGGATTG 100 41
        deoD  455795 ..  455823 +   -11  -6.01369   CAGTCATTATAAAAA        CCGTTGCCGG TATTATTCT CCGGCAGCGG        TTTTTTTATTATTTA 100 48
JA116_RS02040  466676 ..  466690 +  -4.3  -3.62539   GCCACAATAAAAGTA               CCATT ATGAA AATGG               TTAATTTAATTAATG  54 247
JA116_RS02045  468903 ..  468917 + -11.4  -3.41013   TGGGGACTGGATCAG               CCGCTG TGG CAGCGG               TTCTGGATCTGGTTC  89 208
JA116_RS02055 NONE
JA116_RS02060  471325 ..  471335 +  -5.4  -2.88252   TTTATTATTTATTTA                 CTGA AAA TCAG                 TATGGTGATTGATTT  50 72
JA116_RS02065 NONE
JA116_RS02070 NONE
JA116_RS02075 NONE
        ureE NONE
JA116_RS02085  475692 ..  475705 +  -2.3   -3.9122   GCCTGTTTATGAACT               GACAG GTGG CTGAC                TTATTTCCGGGAGTA  53 24
        ureG NONE
JA116_RS02095  477356 ..  477386 + -12.8   -4.1347   CCGGTAGTTACTCAG       GGGACTGATTAT TATCAGC ATAATCAGTCCC       TTTGTCTGGTTCACC 100 58
         yut NONE
JA116_RS02105 NONE
JA116_RS02110 NONE
        crcB  481108 ..  481137 +  -5.9  -3.68416   TTGCAGCACCGGTAA       TTTGCTGAATACTA AAA TAGTAT-CTGCAAA       TTCTGCTTGTTTTAA  61 26
        serB NONE
        radA NONE
        nadR  486029 ..  486055 + -13.7  -4.34267   CCATCCAACCAAAAA         TGCCGCGCGGT TCCTC ACCACGCGGCA         TTTTCCGTTATATGA 100 326
        sltY  490291 ..  490322 + -15.8  -3.87967   GATAGTCCCTTTCCG      GCCCGGTTCAGCAG AAGA CAGCTGCACCGGGC       TTGTGTTATTCTGGT 100 39
        trpR  490813 ..  490829 +  -2.9  -3.77806   TGTTCCGCAGAGAGC              GTGCTGT AAC GCAGCAG              TGTTTTGATCTCCGG  53 145
JA116_RS02165  492288 ..  492311 +   -16  -3.65046   GTGCCGGAAAGGTCA          CCGGGCCGGT TATC ACCGGTCCGG           TTATTCAGATCAGGA 100 43
        gpmB  493734 ..  493747 +  -8.1  -4.30719   GGGTGAACAAGACAC               CACCG GCGG CGGTG                TTTGTTCTGCGGGAG  79 67
        creA  495411 ..  495439 + -14.5  -2.89154   AGCAGGATCAAAAAA        TCCCCGGTGACGC TGA GCGGCACCGGGAA        TATCGTATGATGTTA 100 47
        thrL  496915 ..  496938 + -13.9   -6.3578   AAATCACGAAAAAAA          GCCCGCACA ATTGAC TGTGCGGGC           TTTTTTTTTTGGACT 100 51
        thrA NONE
        thrB NONE
        thrC  501955 ..  501980 +  -7.7  -3.79747   ATCACTTTATACTTG         CC-GTTTTTCTC ATC GAGGAAAACCGG         TTTGATAATCACTGC  69 305
         tal  503850 ..  503867 + -12.7  -5.63517   CAGTCAGATTCAGGA             GGCAGCC GGGA GGCTGCC              TTTTTTGTTTCCGGC 100 52
         mog  504507 ..  504521 +   -10  -4.11394   AAACAGCAATAAAGC               CGCAGT AAC ACTGCG               TTTTCAGCATAAAAT  88 18
JA116_RS02230  505961 ..  505990 + -15.1  -4.77986   TTTATGCTGTTTTAA       TGCCGTGCTGATA TGAC TGTCAGCGCGGCA        TTTTTCAGTGTTTCA 100 52
        dnaJ  509447 ..  509471 + -20.1  -5.43487   TAAATTATATCAAAA          CCGGCCGGAAA ATT TTTCCGGCCGG          TTTTTTGTGTGCTTT 100 53
JA116_RS02245  510356 ..  510371 +  -7.5  -3.25823   GATTTGCAGGATGCC              GCCGG TCAGTC CCGGC               TTGCTGTAACGCAGA  61 246
        nhaA  512423 ..  512463 +  -8.5  -2.76261   ACAGTCCGGCAGTAA CCTGTT--ATTCACCGGCC TTCCC GGCCGGTGAATACAACAGA ATTTCCGAGTTAAAC  64 26
        nhaR  513466 ..  513479 +  -9.5  -6.02914   AAGGATATAAAAAAA               CCGGC GTGA GCCGG                TTTTTTTTGTCTGCA 100 49
        ribF NONE
        ileS NONE
        lspA  518435 ..  518454 + -12.2  -5.39721   GACTGATGACCCGAA            TATCCGCC GCCA GGCGGATA             TTTTTTATCTGATAC 100 35
        fkpB  519001 ..  519015 +  -3.5  -3.55444   TTTTTGTTTTACTGC               CCGTC CGGGC GATGG               TTTGGAGGCTGAACG  51 109
        ispH  519990 ..  520007 +  -9.9   -6.0427   GTCTGATACAGAAAA             GCAGAAC AGAG GTTCTGC              TTTTTTTTGTCTGCT 100 35
        dapB  521138 ..  521148 +  -3.2  -5.48825   CTCATCCCTTTTTCC                 GGTT GTG AGCC                 TTTTTTTCAGTAATC  82 190
        carA NONE
        carB  525814 ..  525827 +  -8.1  -5.90231   AATTAATATAAAAAA               TCCGC TGCG GCGGA                TTTTTTTATCTTTAT 100 48
JA116_RS02310  527517 ..  527543 +  -8.8  -3.62096   GTCGGATAAATAAAA         GCCATCAGTATG ATT TATACTGATGAC         TTTCAGGTAATAAAA  75 310
        exbB NONE
        exbD  532153 ..  532171 + -13.2  -5.45652   GCCTGAAATAAAAAA             GCCGTTCA TCA TGAACGGC             TTTTTTGTTGCCACT 100 55
JA116_RS02350 NONE
        glnE  538090 ..  538100 +  -8.2  -4.08571   ACGCGGATTTTCTGT                 CCGG TGG CCGG                 TTTGTGATATTATCA  79 55
        hldE  539616 ..  539642 + -19.6  -3.54029   AACAGACTGATTATT         CAGGAGATACGC ATT GCGTATCTCCTG         TTGTCATTACTCGCC 100 39
        ribB  541063 ..  541084 + -11.6  -5.08178   CTGAAATCCTGAGAA           TGCCGCTG CTGACA CAGCGGCA            TTTTTGTATCTGTGT 100 71
        ygiD  542006 ..  542032 + -16.7  -5.27335   TTTCGCTATAAAAAA         TCCCCGCGATA CCGGA TATCGCGGGGA         TTTTTGTTTCAGCCG 100 49
        nudF NONE
        cpdA  547343 ..  547361 +  -3.1  -3.21099   CAGATGAGTTCAGTC            CCGATCTG GGTT CGGA-CGG             TTACTGATGGCGACG  46 0
        yqiA  547967 ..  547981 +    -5  -3.30771   AATCGTATTTAAATT               TATCAG GGA CTGGTA               TTATCGCCAGTATCA  53 43
        parE  550406 ..  550425 +  -8.6  -2.64803   AGTGAACTGGGACAC            GGCACCGCA GAC TG-GGTGCC            TAACTTTGACGGTAC  63 494
JA116_RS02420  553164 ..  553191 + -11.5  -2.70979   TCATCCGCTATATCA        TACGCTTAACA CTCCGT TGTTAAGCGTA         TGCCTTTCATTAAAG  80 122
        ftsP  554729 ..  554772 +   -15  -4.57569   CAGTATTAAATGACG ATAAATAAAAAAGGCTGAAT ATTT ATTCAGCCTTTTTTATTTGG TTTTTCAGCGGCTCA 100 32
        folA  556870 ..  556888 + -14.6  -5.62045   TATTAATACAAAAAA             GCAGAGCC ACC GGCTCTGC             TTTTTTCTTGTCTGT 100 74
        djlA  565117 ..  565129 +  -3.4  -4.78753   GACCGGAAACAGCCT                TACC CGCGT GGTA                TTTTCTTCATATTCC  71 466
        rppH NONE
        ptsP  577636 ..  577651 +  -4.6  -3.13343   GCTTAACCGCACATC              CCGCGT AATA AGGCGG               TTCCGTCCTTACAGT  51 35
         lgt  578665 ..  578684 +  -8.6  -5.36441   GTGAGTAACAAAAAA            CTGCATCG TAAC TGATGCAG             TTTTTTGTATCCGGA 100 59
JA116_RS02530 NONE
JA116_RS20195 NONE
JA116_RS20200 NONE
JA116_RS02540  586235 ..  586247 +  -2.6    -3.794   TAAAGGCATTCTGAG                TCGG CTTAC CCGG                TTTAATAAATTCCGG  51 369
JA116_RS02555 NONE
JA116_RS02560 NONE
JA116_RS02565 NONE
JA116_RS02570  590844 ..  590864 +  -8.9  -2.91912   TTTGCCCTGAAACCG            TGCTGGTGC AAA GCCCCGGCA            TGTCTCAGTGGCTGC  68 139
        ptrA NONE
        recB NONE
        recD  602527 ..  602549 +  -2.7  -4.13561   TCAGGATTTTGGAGC          GCCGCTGGTA GTTA TA-CAGCGCC           TGTTTTTTGACCGGC  58 67
        mltA  607177 ..  607212 + -12.8  -4.09519   GTAGTCTTTTATTCC    TG-GGGTGTATACTTTG CGA CGAAGTATGCACCCGCA    TTATTTCTCCGTCAT 100 37
        tcdA  608323 ..  608341 +  -2.4   -3.0579   CGTTGCTGCTGAGTG            CGCCGTC CAGCCA GACG-CG             GTTTTCACAGCCTTT  42 273
JA116_RS02640 NONE
JA116_RS02645 NONE
        rlmM  612732 ..  612755 +  -8.2  -5.68039   TAAATATCGTTAAAA          TCCCGGCGGAT CAG ATT-GCCGGGA          TTTTTTTATCACTTT 100 58
         syd  617483 ..  617504 + -15.9  -4.72272   TTATTTTATTAGAAA           CGAGGGGGA TTTT TCCCCCTCG            TTTTTAATCCCCCCG 100 268
JA116_RS02680  617970 ..  617982 +  -3.3  -2.70932   CACTGGACGGGCTTT                TCGCG TGA CACGA                TCATTGCAGGACACG  42 18
        truC NONE
JA116_RS02690  619253 ..  619279 +  -5.8  -2.99704   ATGACGGAAAATAAC        GCCGCAGCAGC CTGACA GCA-CTGCGGC         ATTGTTTCATCCGGC  54 40
JA116_RS02720 NONE
        rpsB  626110 ..  626142 +  -8.6  -2.88999   AGGTATTGCTGCAAA     TG-GT-TAGGGAGCCG TCA TGGCTCCCTATACGCA     TCTGATATATGAACA  64 74
         tsf  627065 ..  627088 + -14.6  -4.71223   ATAATCATTGCATAT          CAGAGCCGCC GGAA GGCGGTTCTG           TTTTATCTGTTGTAC 100 37
        pyrH  627902 ..  627921 +  -4.8  -2.75521   GATTTCGCGTGACTA            AACGCCGG GACA CCGGCGGA             ATTTGACGGTATCAT  49 25
         frr  628641 ..  628674 + -14.9  -3.21276   CTATGAGATTGCTGA     CAAAGCAGGATAAAAC GTG GTTTT-TCCTGCTTTG     TGTTATCAGCCGAAA 100 89
        ispC  630226 ..  630245 +  -9.3  -5.03994   GACAAACAGAGACAA            CACCGTG AACCTG CACGGTG             TTTTTGTGTCTGACG 100 160
        uppS NONE
        cdsA NONE
        rseP NONE
        bamA NONE
JA116_RS02770  636333 ..  636343 +  -3.2  -3.14404   TATCACTGCTGATGT                 TCTG AAA CAGG                 TTAAATAATTAATGT  46 7
        lpxD  637405 ..  637443 + -13.3  -3.72027   ATTTTGCGGTATTTT  TGCGGCCTGCTA-ACCGCG TGA CG-GGTATAGCAGGCCGTG  TTATTAATAAGACAT 100 47
        fabZ NONE
        lpxA NONE
        lpxB NONE
        rnhB NONE
        dnaE NONE
        accA NONE
        tilS  646673 ..  646683 +    -4  -3.52787   ATCGCTCCGGGAAGA                 CTAT ATC ATAG                 TTATCATATTGGCTA  52 345
        nlpE  647556 ..  647575 + -12.2   -5.0916   GGCAGAAATAAAAAA            GGCTGAAC AAAT GTTCAGCC             TTTTTGTATTCACCG 100 55
        gmhB  654387 ..  654397 +  -2.6  -2.95204   AGAAATAAGCAGCAG                 TAAA CAG TTTA                 ATTCTTTGAGCATCA  43 373
JA116_RS02860  656018 ..  656034 +  -2.1  -2.92157   AAAATGAGCAGAGAG              CGTCTGC GAA GCTGACA              TATGTCCCCTTCGTC  42 86
JA116_RS02865  656149 ..  656179 +  -7.1   -2.7362   GTCATCTGCAAATAA      TGATTAAGCTGATT CAAG AGTCAGCTTAA-CA       ATTATGCTCTTTAAC  59 61
JA116_RS02870  659346 ..  659356 +  -6.8  -4.27316   GGCTTAACCTGACAA                 CACC GAA GGTG                 TTTTGAGTTGAGAGA  74 30
         rrf  659578 ..  659610 + -15.7  -2.71712   CCAGGTTATTATTAA      GTGAAGAAGCCACCC ATT GGGTGGCTTTTTTGC      GTTTGGGCGAAAAGA 100 35
JA116_RS02880 NONE
JA116_RS02885 NONE
JA116_RS02890  662271 ..  662291 +  -9.7  -4.60258   CAGGATATAAAAAAA            CCGGGTG TTTTATT CACCCGG            TTTATTGTTTGCTGA 100 44
        queE  664780 ..  664793 +  -2.3  -3.92522   AGGAATGAATGTCCG               TGCAG ACGC CCGCA                TTTATGGCCTTCCGG  54 300
JA116_RS02910 NONE
        ftsB  667290 ..  667303 +  -8.1  -3.58864   GGTTCACAACCGGCA               CCGGA CTTA TCCGG                TATTTCTGATGATGC  70 73
        ispF NONE
        truD  669591 ..  669612 +    -8  -6.00086   TGATTAAAACAAAAA           GGGCGGAA TAATAT TTCTGCCC            TTTTTTTTGTCCTGT 100 50
        surE NONE
JA116_RS02945  671653 ..  671675 + -13.4  -2.74012   AATAATACAATCCTG           CCATGCGGTC TGC GGCCGCGTGG           TGAATTTCTGATTGT  93 92
        nlpD  672849 ..  672869 + -14.1  -2.59748   ACCGCAGCGATAAAC            GGCAGAACA GCT TGTTCTGCC            TGAATTATCGGGGTA  95 28
        rpoS  673935 ..  673966 +   -16  -4.39426   ATAAAAATTATTCAT      GCAAAAGGGGGGAA TTTA TTCCCCCCTTTTTC       TTTTATCCGGCTGTC 100 72
JA116_RS02985  681310 ..  681327 +  -4.1   -4.5852   AAACTCGTGTTGTTA             CTTCGGT TAGC ACTGGAG              TTTTACTTTCCGTTG  67 462
JA116_RS03000  683742 ..  683754 +  -9.1  -3.31248   GCTCATATCACGGAT                TCGCG AAA CGCGA                TTATAGAAACTGTTG  71 216
JA116_RS03015 NONE
JA116_RS03020 NONE
JA116_RS03025 NONE
JA116_RS03030 NONE
        phnG NONE
        phnH NONE
JA116_RS03045  691779 ..  691801 +  -3.4   -3.1978   CTTAGGATACGACCA           CCCTGTGATT GTT AATGATGGGG           TCTTAATGTCACCGT  46 523
JA116_RS03055 NONE
JA116_RS03060  693450 ..  693472 +  -9.2  -3.53811   GGATCAGTCAATCTC           TTTAGACGGT TAA ACCGTCTACA           TTTAAGGAAGGTGCG  76 13
JA116_RS03070  695672 ..  695683 +  -5.8  -4.81734   CAGCTTCTTTATTTC                CGGA GAAT TCCG                 TTTTTAATGATATTT  78 7
JA116_RS03075 NONE
JA116_RS03080  698184 ..  698194 +  -5.4  -3.85509   CCGGATGTACAAAGA                 GCTT GGA AAGC                 TTTCCGTTCTCTTCC  61 226
JA116_RS03110  704069 ..  704092 +  -2.4  -3.82824   ATAGCCGGAACCAGC          TCCGGGTGC AGCGGTA GCG-CCGGA          TTATTGTAACTGCTG  51 139
JA116_RS03125  706950 ..  706970 + -16.9  -5.59655   ACCATGGTCCTCTGA            GGGCGGCAT TTG ATGCCGCCC            TTTTTTATTAATTTA 100 53
JA116_RS03135  710849 ..  710860 +  -2.2  -3.64703   GCCTGATCCAACACT                TTCC CTGA GGAG                 TTTGCATGAGCGACG  49 35
        cobO  711504 ..  711525 + -12.3  -6.07627   CACTGTTATAAATAA           TCGCTCCGT TTAT ACGGGGCGA            TTTTTTTTTGCCGGT 100 73
JA116_RS03145  712438 ..  712465 +   -15  -4.15044   ACCGGTAACAGAAAG        TATGCCCTCTGT ATCA GCAGAGGGCATA         TTTATTAAGACAAAA 100 60
        cobA  732269 ..  732300 +  -5.8  -3.27525   AAAATAATAAGCATC      CGGCTGTATGCAGG TGAT TCTGTGTGCAGCCC       TTACATTTGGAGGAA  57 51
        cobD NONE
JA116_RS03270  734301 ..  734330 +  -6.3  -4.62772   GCTGCACTCAATAAA       CCGGGTCACATAC TGGT GTATGCTCCCCGG        TTTCTTTCGTTTGCC  77 84
JA116_RS03275  735696 ..  735723 +  -9.8  -2.89298   GCTGAAAAAATAAAA        CTCCGGAGTCGT AATA GCGGCTTCGGGG         TAATTATGTGAGCTG  72 36
        glmS NONE
        glmL NONE
JA116_RS03290 NONE
JA116_RS03295 NONE
JA116_RS03300 NONE
JA116_RS03305  742618 ..  742656 + -16.8  -3.53012   CATTAGTACGACAAC   TCGATGTGGCGTACGGGG CTT TCCTGTACTCCGCATCGA   TTTCAGAAACAGAAA 100 63
JA116_RS03310  744203 ..  744230 + -12.8  -5.93809   TGTAATATGTATTAA        GCGCAAAATGCC CTCA GTCATTTTGCGC         TTTTTTTTGTACGGG 100 123
        eutS NONE
        eutP NONE
        eutQ NONE
        eutT NONE
         pta NONE
        eutM  754597 ..  754625 + -10.3  -4.34402   TCGATTAATCGTTGT        TAGCGTGGCGT GCTTCTG ACGCCACGCGA        TTTTAATCTCCCCGG 100 33
        eutN NONE
JA116_RS03375  756502 ..  756529 + -13.4  -4.62872   CATCGTGTAAGCCGC        TGCGGTGGAGCC TGCG GGCTTCACCGCC         TTTTTCCCGGTTAGT 100 31
        eutJ NONE
JA116_RS03385 NONE
        eutH NONE
        eutA  761358 ..  761373 +  -3.2  -2.64794   AAATCACTCGCATTT              CCTTCC TGAG GGAACG               TAATATGAAATTAAA  42 17
JA116_RS03400 NONE
        eutC NONE
        eutL NONE
JA116_RS03415 NONE
JA116_RS03420 NONE
JA116_RS03425 NONE
        eutR  768173 ..  768213 +  -3.6  -2.86271   TCCATAAGAAGAATT  TAAATATCCAATTAGT TCTATATTT ATTAATTGGCTATTTA  TAATTCTACTGAGCA  45 176
        ansB  769305 ..  769332 +  -9.7   -5.4505   ACGCGTTTTTTCAGA        CCGCAGCCCCC GTGTAG GGGGGGGGCGG         TTTTTTATTACCGGA 100 43
JA116_RS03440 NONE
JA116_RS03445 NONE
JA116_RS03450  773731 ..  773745 +    -7  -5.00884   ACTGCTCAATGTACG               GCGGCG TTA CGCCGG               TTTTTTCCCGCAGCT  86 523
JA116_RS03460 NONE
JA116_RS03465  776245 ..  776257 +  -3.3  -5.39721   TTTCTCACCACGACC                TGCGC TCT GCTCA                TTTTTTCTGTAGTAA  85 191
        yqeC NONE
        yqeB  791223 ..  791246 + -16.8  -2.90496   GCTGATAACGGACTT          TCCGGGTACG GCAG CGTACCCGGA           TGATTTCAGGCGCGG 100 36
JA116_RS03525 NONE
JA116_RS03530  794013 ..  794047 +  -4.4  -4.72497   CCCGGAAGCTGACAG    CGCGGAATTATCCGTG CTGTT CACGGA-AAT-CCGGG    TTTTATTGGTAAATG  72 365
JA116_RS03540 NONE
JA116_RS03545  796921 ..  796951 +  -9.6  -3.45023   CGGCAGAGTGTCATC       CGCTGCTGCGGG ACGATCA CCCGAAGCCGCG       TTGTGCTCCTGCTGC  71 291
      tet(D)  798687 ..  798708 +  -5.1  -3.35438   CGGCAACCTGCTGAC           CGGCGCT ATACAGGC AGCGCTG            TTGTGCGGTATGGTG  55 27
JA116_RS03560 NONE
        fghA  800743 ..  800756 +  -9.5  -5.24129   GTCTCAACGCATAAA               CCCGG TCAG CCGGG                TTTTTTCTGCGACAG 100 27
JA116_RS03580  804585 ..  804603 + -17.4  -4.56597   AGGTAACAAAGCAAA             CGGCCGGG GTT CCCGGCCG             TTTTTCACAGAAAAA 100 48
JA116_RS03610  813177 ..  813200 + -15.3  -5.37043   AGAATGTGTGCCAAA          GCCGCACGG AAGTTA CCGTGCGGC           TTTTTTGTATCAGAT 100 55
JA116_RS03620  814316 ..  814351 +  -8.2  -4.44974   GTGCTTTTGCAGCAG    CAGACACCGCAACCCTG ACG CCGGGC-GCGGTATCTG    TTTTCTGCGGTTTAC  87 8
JA116_RS03640 NONE
JA116_RS03645  822717 ..  822734 +    -7  -5.60993   ATGTAAATACTGAAA             GCATCC TGCAAC GGATGC              TTTTTTTATAGAGAA 100 51
JA116_RS03655  825290 ..  825303 +  -6.7  -2.65206   GCAGAGATTCTCTCT               GACAC TCCG GTGTC                TCCGTTATCCTTTCT  56 24
        rarD  826959 ..  826980 +  -3.6  -3.08358   TGGGGATACGATCCC           GCCGATCA CTGTGA TGGCCGGC            TATCTGCTTATTTCG  48 12
        purT  828233 ..  828248 +    -6  -2.65264   GGCGTCAGTGGTCGT              CACCGG CTGA CCGGGG               TAATATCGGTGATGG  52 16
JA116_RS03670  829318 ..  829333 +  -4.6  -3.71045   TAAGCACGGAGATTG              CCGGAA GGTG TGCCGG               ATTTTTTAGTCATAT  55 507
JA116_RS03680  831869 ..  831907 + -11.1  -5.56673   GTAACGCTGAAATCT   CATCCCCCGTATGATGT CAGTC ACATTGTGCGGGGGATA   TTTTTTATTATCCGT 100 53
        yjiA  833018 ..  833040 +  -7.8  -3.95036   TAAAAAGCCAAACCC           GGAAAAATCA GGC TGATTTTGCC           TTGTTTGCCATGATT  74 103
JA116_RS03700  837230 ..  837243 +  -6.7  -5.62045   ACAGCGTTGAAAAAA               GTGGT GAAA ACCAC                TTTTTTATTATCTGT 100 59
        tnaA  839219 ..  839245 + -15.2  -3.56092   TAACCCTGTCGTCTT         ACAGGAGGATGC ACT GCATCCTCCTGA         TTTCAAACATAATGA 100 38
         mtr  840839 ..  840852 +  -8.1  -2.92668   TCGTGAATATAGCTG               GCCTG TGCA CAGGC                TATCATTAACTCCTC  58 332
JA116_RS03730  845319 ..  845332 +  -8.1  -3.86524   CTCAGCACAATCATC               CAGCG TAGT CGCTG                TTTCTGCCCCGATAT  72 421
JA116_RS03745  848032 ..  848065 + -14.9  -3.23393   TGTTGAGATTGCTGA     CAAAGCAGGATAAAAC GTG GTTTT-TCCTGCTTTG     TGTTATCAGCTGAAA 100 48
JA116_RS03755  849547 ..  849568 +  -7.3  -5.03314   GGAGTAAATAATTAA           GCGTAGTAA GTCA TTACTCCGC            TTTTTTCACGGTCAG  89 30
JA116_RS03765  851883 ..  851912 + -13.7  -3.01791   AAAGCAGTGAGATAA       AAAAACCGCTTCC GTAA GGAAGCGGTTTTG        TATTCAGGGAAAAAT 100 44
        cueO  862154 ..  862175 + -12.3  -2.93566   ATTACCCGGTGACAA           TCCGCGTCA GTCA TGGCGCGGA            TACTGTTTATCTGTC  93 48
         hpt  862847 ..  862864 + -12.7  -4.20806   TTGTGAATATAAAAA             CGGCACC TGCG GGTGCCG              TTTGCTTTTACAGTG 100 50
JA116_RS03820  864643 ..  864657 +  -4.2  -2.80816   CATGATTTGGAGGCT               GCGAAA TGA TGTCGC               TGTACTGGGTGGCGC  46 17
JA116_RS03825  865438 ..  865459 +   -13  -5.07275   GCATTCTGATAATCA           GCCCGGCA CATTGT TGCCGGGC            TTTTTGTATCTGTCC 100 45
JA116_RS03830 NONE
JA116_RS03835 NONE
JA116_RS03840 NONE
JA116_RS03845  870692 ..  870717 +  -8.3  -3.31501   CGCTGTTCTGTTTGC         TGTCCGCCGCTG TGC CGGCGGTG-ACA         TTGTCAGAACTTCGT  69 75
JA116_RS03850  872220 ..  872256 +    -3  -5.38549   GGATCATATCTGCCA   GAGTCTGCATCA--CCTG ATA CAGGCGTGGTGCTGCCTC   TTTTTCTTCTTTGCC  85 274
        hrpB  879878 ..  879892 +  -4.3  -3.61889   AAGTTTATGTAAATG               CAAAG ATAGC CTTTG               TTTAACGGATTTTTA  54 29
JA116_RS03895  883328 ..  883343 +  -4.6  -3.70773   AGTTGTCGCACGCCA              TCACCG CTAG CGGGGA               TTCTTGACTGTACGC  57 340
JA116_RS03900  884574 ..  884602 +    -9  -2.83748   TCAGCTAATCTTGCA        TGCTGCTCTA TCCTAGATT TAGAGCAGCA        TCGTTAACTTTCTGT  67 67
JA116_RS03935 NONE
        dmsB NONE
JA116_RS03945 NONE
        dmsD  896533 ..  896556 +  -8.9  -5.80364   TTGCTCGTAATCTTG          TACGCCTCT TTCTCC GGAGGCGTA           TTTTTTTGTTGCAGT 100 68
JA116_RS20210  897311 ..  897328 + -14.1  -4.27584   AGCCCACTGAAGTAA             CGCCGGG GTAA CCCGGCG              TTTTGCATTGCGGCT 100 229
        erpA  899719 ..  899736 + -14.1  -4.44797   AGATAACAAATAAAA             CGGGCGC TTTT GCGCCCG              TTTTGATATTGCTGA 100 50
JA116_RS03985  902160 ..  902177 +  -3.3  -3.73224   CCGCAGCGGTTGGTA             CGCCTGGC GTC GCC-GTCG             TTTACTGACGAATAC  51 471
JA116_RS03995 NONE
JA116_RS04000 NONE
JA116_RS04005  906453 ..  906466 +  -4.5  -3.32844   AACTGACGATGCGCG               TCTGC CGCA GCGGA                TTATCGGATAAGGGG  53 1
        dmsB NONE
JA116_RS04015  907918 ..  907939 + -11.6  -5.24129   GGTATGAAACAAAGA           TCCGGACG CTTTTA CGTCCGGA            TTTTTTATCAGCGGG 100 46
JA116_RS04025 NONE
JA116_RS04030  911251 ..  911274 +  -3.9  -3.87815   CGGGTTTTGGCCGAA          CTGGAGAAA GATCCG TTTTTCCGG           TTTATCACCGTAGCG  58 422
         dgt  914108 ..  914135 +   -10  -3.19157   TCACAAATGACCTGA        CAATTCCGGT TCAATATT ACCGGAATTG         TTGCTACGATTAATC  74 66
JA116_RS04050  915532 ..  915552 +  -8.4  -6.09133   ACCGGCAATAATAAA            CCGTTATT TTTTT AATAACGG            TTTTTTTTTGCGGTA 100 69
        rlmD NONE
        relA  919491 ..  919505 +   -10  -5.64274   CGGTTACACTGAAAA               GCAGAC TCT GTCTGC               TTTTTTTATCACTCG 100 54
        mazG NONE
        pyrG  922210 ..  922234 +  -9.3  -3.51161   TAAGATGTGAGGTGA          GTGACCGGC CGTAAGT GCCGGTTAC          TTATCTGAAAATTTA  76 38
         eno  923593 ..  923613 + -15.5  -5.64274   GTGAATGTTAAAAAA            GGTGTGTCC GGC GGACACACC            TTTTTTTATGACTCC 100 49
JA116_RS04080  925335 ..  925354 + -13.6  -5.60993   GTACAACGCAAGAAA            CCCGCTGA TTTA TCAGCGGG             TTTTTTTATACCGGC 100 72
JA116_RS04095  928970 ..  928980 +  -8.2  -2.71712   AGTGCACCGTAACCG                 CCGG GTC CCGG                 ATTTCCCAGGCAGGA  63 442
        dnaQ  929830 ..  929841 +  -3.6  -4.03234   CGGAGCTGACAGTAT                GCTG TGCG CGGC                 TTTCTGTACAAAACC  58 32
JA116_RS04110  930050 ..  930074 + -17.3  -5.56263   TCCGCCACATTATAA          CGCCATGCTAT TCA ATAGCATGGCG          TTTTTGTTTTGTGGT 100 34
        lysS  932626 ..  932665 +  -8.7  -2.64091   AGTAGAATAAAATGA  GAAAGGGGGGAGGTTAAT GAATA ATTAACCTCCCC-CTGAC  TCATATGAAGTGCTT  66 31
JA116_RS04125  933826 ..  933849 +  -9.4  -3.02096   ACACCTGCATCCGTA          CACCCGGCCG GCTC CGGCCGGGGA           TCTCTGGTTACTCCC  71 266
        cadB NONE
JA116_RS04135  937866 ..  937893 + -16.4  -3.08863   TGATATAAGCCTCTC        TATGGCCGCCTC ATTT GAGGTGGCCATA         TACTTCTTTAATTTA 100 45
         tkt  940795 ..  940824 +  -9.4  -5.88197   ATACAGATTCTGAAA       GCGCATTCCGGTT TTTTT GACCG-AATGCGC       TTTTTTTATCTTTGC 100 48
         epd NONE
         pgk NONE
        fbaA  944471 ..  944493 + -19.2  -5.72616   GCGTGAATAACAAAA           CCGCCCGGTA TTT TACCGGGCGG           TTTTTTTGTATGAAT 100 47
JA116_RS04190 NONE
JA116_RS04195 NONE
JA116_RS04200 NONE
JA116_RS04205 NONE
JA116_RS04210  954373 ..  954389 + -12.3  -3.58864   ATAATTTCTTTCAGC              GGGCTGA GAA TCAGCCC              TCTTTATAATAATCC 100 40
JA116_RS04215  955025 ..  955055 +   -14  -2.64803   GCTGGCTGCCGTAAA       AAATGCCCTGTCCG TTA CGGACAGGGCATAC       TGCGTTTACAGATCC  95 53
JA116_RS04255  965831 ..  965843 +  -6.3  -4.42386   GCTTTCTGCCATTTA                TCATC ACA GATGA                TTTTGTCGATAACGG  72 92
JA116_RS04310 NONE
JA116_RS04315  979599 ..  979612 +  -6.7  -3.31415   GTTCCCTGGTATAAA               CGCTT GCTA AAGCG                TTGAGTTTAATAGTA  61 8
JA116_RS04320  980425 ..  980440 + -10.4  -4.58308   CCGGAAAGCAAAAAA              CCAGCC CGAA GGCTGG               TTTCTTTAATTAGTG 100 416
        trmB NONE
JA116_RS04355  984487 ..  984512 + -13.4   -2.9914   CACGCTAATTATTAA         TAAGGGCACC CGTTCA GGTGCCCTTA          TCTCTCTCCGGCATC 100 55
        glsB  985544 ..  985558 +  -3.6  -2.55551   TGAGAATCAGGAGTG               TTTATG TTA CGTAAA               TGGATTGCCGTTCTG  44 67
JA116_RS04365  986280 ..  986310 +    -9  -5.41143   CCCTTAAGTAATATA       AGGTTACCGGTGCA TTA TGTGCCGGTAACTG       TTTTTTTAGCCGATC 100 30
JA116_RS04370  987420 ..  987441 +  -9.3  -5.86976   TCTGAATAATAAAAA           CCCGGGCGT GAAA GCGGCCGGG            TTTTTTGTTTTATAA 100 53
JA116_RS04395  991634 ..  991644 +  -2.4  -4.32857   ATAATCACGGCAGAG                 GCGG AGT CCAC                 TTTATCTTTGCCGAG  60 105
JA116_RS04420  995715 ..  995735 +  -9.7   -4.0371   CATCCCGCCGCCGTG            CAGGGCG ATGGTTA CGCCCTG            TTTATGTACGGCCTG  83 509
JA116_RS04435  998014 ..  998024 +  -4.6  -4.20084   CCATAATCATCCGCC                 GCGG AAT TCGC                 TTTTCACTGAATAAT  64 278
        lysA 1000067 .. 1000100 +   -14  -3.75024   TTTCTGACTGATATT     GAAAATCCCCGGGA ATAACA TCCCGGGGATTTTA      TTATTAATACTCCCG 100 58
JA116_RS04450 NONE
JA116_RS04455 1002458 .. 1002487 + -17.9  -4.30995   GTAAGACAGAGCAGT       CATGGCGGAGCAG GGAA CGGCTCCGCCATG        TTATTTTATACGCCG 100 37
        lpcA 1005938 .. 1005961 +  -6.6  -5.74122   CAGGCATCTGAAAAA          GCACTCCGCT ATCC GGCCGGGTGC           TTTTTTTATGTCGTG 100 47
JA116_RS04470 1007126 .. 1007139 +  -5.9  -2.74144   TCAGATCTGTCTGTC               CGCTC AGCA GGGCG                CTTTCCACATAGCGG  51 252
JA116_RS04480 NONE
JA116_RS04485 NONE
JA116_RS04490 1011459 .. 1011473 +  -7.8  -3.07344   AACAACCCGATTGCC               CTCCAG GTT CTGGGG               TGTGTTCGGCGCTGG  63 84
        nqrE NONE
        nqrF 1013886 .. 1013911 + -14.7  -2.63596   CCCTGTCATAACGAA         ACTGCGCCCAC TCCT GTGGGCGCAGA          TGATCTGAAATCAGA 100 48
JA116_RS04510 NONE
        nqrM 1015259 .. 1015283 + -15.8  -4.58786   CTTTGTCAGCAATCT          CAAAGGCGCC GGTCA GGCGCCTTTG          TTTATTGTTGTTCAT 100 63
        dinB 1018730 .. 1018751 +  -2.2  -5.08824   TCGGCCCGATGGAAA           CCATGTCC ATGTCC GGATACGG            TTTTTTGAATAAACC  74 202
         gpt NONE
        frsA 1022515 .. 1022530 +  -6.8  -4.32482   CCCCCCGGAAAGCAG              CCGGAT TAAT GTCCGG               TTTTGCGTTGTGCCT  74 488
        proB NONE
        proA 1025037 .. 1025049 +  -3.3  -4.84033   CAGATGACAACCGTT                CTGCG GAT CGCAC                TTTTGCTTTTTATCT  68 76
        aroL 1025658 .. 1025683 +  -3.9  -4.77165   ATCTGTACCCGCCTT         CACGCCGCTGTA TAA TTCTGCGGC-TG         TTTTATTGTGAACAG  70 11
         aas 1028028 .. 1028044 +    -8  -3.57144   AAGCGGTACTGATTT              CGCAGT TTATT ACTGCG              TTTGCGGATAACGCG  68 74
        pncC 1029698 .. 1029713 +  -6.2  -2.82933   AAAAATCACTTGATA              CTGTAT GACT ATACAG               TATAATCACTTCAAC  55 18
        recA 1030921 .. 1030951 +   -17  -4.99638   TCATTGAGTTATTTC       GAAAGCTGTATCCG TGA CGGGTACGGCTTTC       TTTTTGTCTGCGTAT 100 82
        alaS 1033880 .. 1033905 + -14.7  -2.50016   CGGAGTATATCTGAA         CAGGGGCGCGC TCCG GCGTGCTCCTG          ATATTGGTGATAACG 100 42
        csrA 1034290 .. 1034321 +  -7.3  -4.10437   TAACTATTAAGTTGT      GAGGCGCGCTCGTT ACCGC GACGGGCGC-CTTC      TTCTTTCCTTCCTGC  73 31
JA116_RS04600 NONE
JA116_RS04605 1034821 .. 1034841 +  -7.5  -5.45802   GGTGCACCATTTAAA            CCCCACGAT ACT GTCATGGGG            TTTTTATTTTGGCAA  95 32
JA116_RS04610 1034976 .. 1034986 +  -3.2  -3.53841   GTTCGAATCCTCTCG                 GGTG CAC CATC                 TTATCACTTTATTTC  49 17
JA116_RS04615 1035105 .. 1035115 +  -3.2  -3.40191   GTTCGAATCCTCTCG                 GGTG CAC CATC                 TTCCTCTCTTATCCC  47 17
JA116_RS04620 1035223 .. 1035241 +   -16  -5.63236   TGCACCATATAAAAA             CCCCGCTC TTT GAGCGGGG             TTTTTCTTTTTCCGT 100 34
        gshA 1037031 .. 1037048 +  -5.5  -3.01125   TTTGATGAGTATCTG             GCG-CTGC ATG GCGGTCGC             TGATTTCTGACAGAT  52 5
        luxS 1037756 .. 1037778 +  -9.9  -5.67063   CCGGATACAAAAAAA          CCTGCG-GCA GCAA TGCACGCAGG           TTTTTTTATGGTGAC 100 50
         ffh 1041565 .. 1041598 + -12.5  -3.98083   GGGCTTTTTCTATGA     CAACCGGACGCCATT CCTC GATGGGGTCTGGTTG      TTTGTCAATTCAATG 100 107
        rpsP NONE
        rimM NONE
        trmD 1043234 .. 1043251 +  -6.3   -4.1721   CAACAAGTTAATCCA             GGTATCC TGCG GGATATC              TTTTGAAATATCAGT  69 30
        rplS 1043672 .. 1043690 + -11.7  -5.46657   GATATGATAATAAAA             GGCCAGC CTCGT GCTGGCC             TTTTTTATTGCGCTA 100 54
JA116_RS04670 NONE
        tyrA 1046330 .. 1046347 + -11.3  -5.38321   ATAAAAATAAAAAAA             GCGGATG ATAT CATCCGC              TTTTTTGTCATGTTT 100 43
        rluD NONE
        pgeF NONE
        clpB 1054901 .. 1054918 + -14.1  -5.03715   AGAAAACAAAACTGA             GGGGCGC GAAA GCGCCCC              TTTTTTGCGCATCAT 100 48
JA116_RS04715 NONE
JA116_RS04720 1057050 .. 1057061 +  -2.2   -3.6682   ACTGATACTGCGTTG                CG-GC TCC GCTCG                TTTACGTCAGTAAAC  49 47
JA116_RS04725 1057248 .. 1057285 +  -9.3  -3.56837   CTGATATCTGAACAA   TAATTCAGAGTTTACCG GAAA CGGTATGCTGTGAATTA    TTATGCTCTTTAACA  76 45
JA116_RS04730 1060452 .. 1060462 +  -6.8  -4.27316   GGCTTAACCTGACAA                 CACC GAA GGTG                 TTTTGAGTTGAGAGA  74 30
         rrf 1060683 .. 1060715 + -15.7  -2.71924   CCAGGTTATTATTAA      GTGAAGAAGCCACCC ATT GGGTGGCTTTTTTGC      GTTTGGGCGAAAGTA 100 35
        treR 1061882 .. 1061895 +  -6.7  -3.16608   ACGTTCGTCCCGTAA               TGGGA TCGT TCCCA                TTGAGTCATTTCCAT  59 70
        treB NONE
JA116_RS04750 NONE
        pgmB NONE
JA116_RS04760 1068244 .. 1068262 + -13.2  -5.94713   ATCACAGTAAAAAAA             TACCGGGA AAA TCCCGGTA             TTTTTTTTGTCGGAT 100 50
JA116_RS04860 1090662 .. 1090702 + -12.8  -3.31461   TGAATGTATCATTAA CCAGATGAAAAAAGCTGCC ATAA GGCAGCTTTTTTT-TCAGG  TTCTGACAATGCATC 100 125
JA116_RS04890 1101419 .. 1101434 + -11.8   -5.1675   AGTGATTGATTCAAA              CCCGGC ATTT GCCGGG               TTTTTTAATCGATCA 100 53
        mnmH 1116915 .. 1116951 +  -6.5  -3.10677   CATCATTCGTCATAA    ATCAGTCCGCCGGGATA TCA TTTTCCGGTGAACTGAC    TTGCATGAATTCATT  57 51
JA116_RS04960 NONE
        cspE 1117996 .. 1118019 +  -7.5  -6.02914   TTACCGTGACGAAAA          CCTGTTACT CACCAT AGTAACGGG           TTTTTTTTATATCAG 100 82
JA116_RS05020 1128750 .. 1128765 +  -3.2  -3.93236   TTTTATCGTCCATTA              GTTACC TTCA GGTTAC               TTTGTGAAATTAATC  56 357
JA116_RS05030 1129714 .. 1129742 + -13.9  -2.82834   GCCAGGAAAATATAG        CCGGACGGCCT TTTGTGC AGGCTGTCCGG        TGTGGTGATCAGATG  85 169
JA116_RS05075 1138649 .. 1138672 +  -3.1  -5.32565   CATGAGGGATTAGCA          ACCGGCAAT CTTTAT ATTGTCGGG           TTTTTTGCTTAATTC  79 28
JA116_RS05085 NONE
JA116_RS05090 1141982 .. 1142007 + -13.3  -6.02914   GTCTGAAATGAAAAA         TCCCGCGGTGA GCAA TCACGGCGGGA          TTTTTTTTATCTGCG 100 44
        ubiF 1149068 .. 1149095 +  -9.8  -4.76478   CACGTCCGTGTGCGC        TCAGGCGCGTCA TCCC TGACGCGCATGC         TTTTCGTTTATTTTG 100 123
        nagE 1155798 .. 1155817 + -11.4  -5.82281   CAGTTATGATAATAA            CGGGAGGC ATCT GCTTCCCG             TTTTTTTATCTGTTT 100 48
        glnS 1157649 .. 1157666 + -11.3  -5.76237   ACTGATATAAAAAAA             GCCGTTC ATGC GAACGGC              TTTTTTGTTTGTGTC 100 57
JA116_RS05195 1160282 .. 1160301 +  -7.8  -3.05844   CGTCTGTCCGGGTGC            TGACACCG GCAG CGGTGACA             TCTTCCAGTGCCGCG  59 406
        seqA 1161515 .. 1161530 +  -5.4  -4.04206   CGAGAAAGTCTGCAA              TACCCT GTAA GGGGTA               TTTATCTGCCGGTGA  63 16
         pgm 1163233 .. 1163257 + -15.7  -6.06723   TCCCGGAAAAAGCGA          CGCGGAGCGGA TTT TCCCCTCCGCG          TTTTTTTTTACCGCG 100 46
JA116_RS05215 1163772 .. 1163814 + -18.6  -2.96152   ACCGGCATCCGGCAG CAAAAGAGGCGCCCGGCGAT ATT ATCGCGGGGCGTTTTTTTTG TCTGTAAATTGCTAT 100 42
JA116_RS05220 1164643 .. 1164660 + -12.7   -4.4084   CGTAACAAGAAGAAA             GCCGGTC ATCT GACCGGC              TTTTACTATATGGTT 100 43
JA116_RS05230 1166732 .. 1166745 +  -8.1  -4.36914   GAATGCATAATAAAA               CCCTC CGGA GAGGG                TTTTATAAGGACGGA  79 56
        sdhC NONE
        sdhD NONE
        sdhA NONE
JA116_RS05255 1171953 .. 1171973 + -15.5   -4.2558   GATTGATAATAATAA            GATGCCTGC AAG GCAGGCATC            TTTTACTAACCCGTA 100 62
        sucA NONE
        odhB NONE
        sucC NONE
        sucD 1178629 .. 1178661 +  -9.2  -5.21709   CCGGGTATTTTTATA     CAGCCGG-GGCAG GCCTGATA CTGCTTCCGGCTG      TTTTTTGATCTGAAC 100 43
        cydA NONE
        cydB NONE
        cydX NONE
        ybgE 1182581 .. 1182598 + -11.3   -5.8901   CGTTTATGACAACAA             GCCGTTC ATCT GAACGGC              TTTTTTCTTTTCTGT 100 62
JA116_RS05305 NONE
JA116_RS05310 1185547 .. 1185562 +    -9  -4.75308   TCGGTAGCACAAAAA              TCCGGA TAAT TCCGGA               TTTTTGCATATTCAT 100 188
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 1188516 .. 1188527 +    -3   -3.3422   GTCAGTAACCTGTTA                TATC CTGT GATA                 GTTTTTAACAGGGTA  47 54
        tolB NONE
         pal NONE
        cpoB 1191216 .. 1191231 +  -3.2  -2.80715   GCTGAGAAAAAACTG              GCTGGT TTAT AACAGC               GGTTTATTTTTTTGC  43 14
JA116_RS05350 NONE
JA116_RS05355 1191581 .. 1191593 +  -3.3  -3.06492   CATTTCAGACCACCT                CCGCA GTA TGCAG                TATTACGATGGGTCG  44 39
JA116_RS05360 1191715 .. 1191743 +  -2.6   -4.7261   TTATTCTCCCCGGCC       TCAT-ACCGG-AGA TCA TCTGTCGGTTATGA       TTTATTTTCCTGCGT  64 62
        pnuC 1193581 .. 1193608 + -12.2  -3.14132   ATCCGGTGATTATAA        TGAGAGTCTGAT AACA ATCAGATTCTCA         TTAATCAGCAACAAA  86 60
JA116_RS05375 1194581 .. 1194601 + -12.6  -4.26019   CACCCCTCTCACAGG            CAGCGGCT GATGA AGCCGCTG            TTTTCCATCTGATTC 100 42
JA116_RS05400 NONE
JA116_RS05405 NONE
JA116_RS05410 1201898 .. 1201908 +  -6.8  -3.65425   CTGCAAAAAGCTATT                 TCCG GTG CGGA                 TTTCCCGTATGTAAA  65 437
JA116_RS05425 NONE
JA116_RS05430 1205339 .. 1205366 + -14.2  -3.76546   GATTATCCTGTATTC        AGGATCACCTGC CTGT GCAGGTGATCCG         TCTTTGCTTTTGTTT 100 39
        modA NONE
        modB NONE
        modC 1208144 .. 1208166 + -13.5  -3.18264   TGCCCTGCCGCTGAA           CCGGCGATA TATAT TATCGCCGG           TTCATCACTGACCCC 100 97
JA116_RS05450 1208663 .. 1208680 +  -8.5  -5.38249   GAAATAATAAAAAAA             TGCCTTT ATTA AAAGGCA              TTTTTTATAGTTCAT 100 65
         pgl 1211117 .. 1211158 +  -2.7  -4.36778   TGCCGAGCACCCGGG CATCCCGGACGCCGCTG CGGGATTT CAGCGGCAGCAGGGCGG  TTTTCAGTTGTGTTT  62 400
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 1216019 .. 1216037 +  -3.1   -4.8277   GGCCGGGTGTTTTTT             ATCAGGA AAAAA TCCTGAA             TTATTTTTTCTCTTT  68 85
        uvrB 1218557 .. 1218594 + -14.1  -2.88544   TCAGCAGCAGATTGC   GGTCATGGCGGTACGGG ACAT CCTGTGCCTCCAGGACC    TCTCTGACAATCAGG  86 81
JA116_RS05500 1220264 .. 1220297 + -16.8  -4.21772   TGGTAAATAATTTTC     CCGGCAAACCGCCG TATTTC CGGCGGTTTGTTGG      TTGTTATTTGTTCGG 100 75
        moaA 1221610 .. 1221628 +  -9.5  -2.63112   CGAATTTATCTGTTA             TCGGCGG CTGAT CCGCCGG             TCATATCAGGAGTTT  68 15
        moaC NONE
        moaD NONE
        moaE 1222977 .. 1222998 +  -4.5  -3.73775   ATCTATAGGCCTTGG           TCGTTTATC ATCC GATAAACAA            TTTGATACAGATGAA  57 176
JA116_RS05525 1223798 .. 1223831 + -14.9  -3.21276   GCCTGAGATTGCTGA     CAAAGCAGGATAAAAC GTG GTTTT-TCCTGCTTTG     TGTTATCAGCCGAAA 100 86
        rhlE NONE
        dusC 1235299 .. 1235310 +  -4.4  -2.94032   AAAATTTGCTTTTTT                TGTC ATAT GACA                 CTTTAATTGACAGGT  47 39
JA116_RS05585 1235642 .. 1235668 + -13.1  -5.71983   TAACAGATAAAAAAA        TGCCGGAGTCAC TGAT GTG-CTCCGGCA         TTTTTTTATGGTTCG 100 49
        dinG 1239112 .. 1239136 +  -6.5  -5.13354   GAACGGCTTTTCGGT          TGCAGCATAAA GGA TTTATGCAGTA          TTTGTTTTTTATCCG  86 148
JA116_RS05625 NONE
JA116_RS05630 1242902 .. 1242918 + -10.9  -4.55887   ACTGAGATAAAAAAA              CCTCATC ATG GATGAGG              TTTCTGTTTTTCAGA 100 36
        codB NONE
JA116_RS05650 1249685 .. 1249713 + -14.6  -3.74872   AGCACCACTTTTCCG        CTGCTCACCTGC CCGTA GCCGGTGAGCAG        TTTGATGCACTCCAT 100 79
JA116_RS05665 1252994 .. 1253027 +  -8.3  -4.93547   AATAATTAACTCAGG     GATAACAGGCTTATT ATTT ATTAATCCTGTTATC      TTTTTAATTAATTAA 100 39
JA116_RS05670 NONE
JA116_RS05675 1253585 .. 1253596 +  -3.6  -3.92746   AGGTTATATAACACA                TCGG TTAT CCGG                 TATTTTTCCGGTAAA  58 30
        folE 1254445 .. 1254455 +  -2.4  -2.84504   CGCCAGGAATTCCTG                 CGCG CAG CCCG                 TCATATTTAACCGAT  41 5
JA116_RS05685 1255639 .. 1255662 + -11.6  -4.67168   GATGCTACGGTGCAG          CCGGTGCCGG TTGC CCGGTTCCGG           TTTTTGCCGGTTTTT 100 44
JA116_RS05715 NONE
JA116_RS05720 NONE
JA116_RS05725 1262566 .. 1262583 +  -6.9  -5.59564   TTTTAAAATAAAAAA             CCTGCAC CAAA GCGCAGG              TTTTTTTCAGTTTAT 100 49
        apbC 1266059 .. 1266082 +  -8.8  -5.60993   CCGGAAAGTAAAAAA          GGCCCGCACA GTAA TGTGCCGGTC           TTTTTTTATGGCAGC 100 68
         udk 1266955 .. 1266979 +  -8.7  -2.64155   ACAACGAATTAACCC          GCGTTTATC CGCCGGT GATAAACGC          TGAGTTTAAGAAGGA  66 48
         dcd NONE
        asmA 1269531 .. 1269559 + -12.6  -5.14563   ATTTATACAAACAGA        GCAGTGACGATA ATTTA TATTGTCACTGC        TTTTTTAATGCAGAA 100 52
        dcuC 1271101 .. 1271124 + -13.8  -5.38047   TGTAAAACGCGATAA          GCCGCACCGG TTAT CCGCTGCGGC           TTTTTTGTATCAATA 100 36
JA116_RS05760 1271453 .. 1271469 +  -9.4  -3.89215   AAAGCAATAAAAAAA              CCCCGT ATCTG ACGGGG              TTTCGCTTTATAAAG  81 40
JA116_RS05780 1276014 .. 1276045 + -17.4  -2.66435   CGATTAACTGTTAAA      TAATAACGCCGCCG GAAA CGGCGGCGTTATCA       TCATATCGTGCGGGT 100 34
JA116_RS05810 1284177 .. 1284207 + -11.1  -3.09327   TGCCGGAGAGAAAAT       CGCTGAAGACCCG GGTTA CGGGCCTTCAGCC       TGTTGACTAACATAA  79 50
         hcp 1284833 .. 1284857 +   -13  -3.60805   CAACGATAAGCTAAA          GGATATGTGC TATTT GCACATATCC          TTTGAAATAACGTAT 100 45
JA116_RS05885 1296370 .. 1296391 +  -8.7  -4.68103   CAGAGAATAAACTCA           CCGTCCTGA TACG TCGGGATGG            TTTTATTCGGGTTCA  88 474
JA116_RS05895 1297972 .. 1297995 + -14.6  -4.59081   GGTTAAACACAATAG          CCTGCCGGTT AACT GACCGGCAGG           TTTTCTCTCCGTTTA 100 35
JA116_RS05900 1298677 .. 1298701 +    -8  -5.60993   GAAATCCGTATAAGA          TCCGATATTA CATCC TGATATCGGA          TTTTTTTATAAAAAA 100 99
JA116_RS05905 1299290 .. 1299313 + -16.8  -4.63527   TCCTGATATGAAAAA          CCCCCGCAAT CTGC ATTGCGGGGG           TTTTTGCAGTCATCA 100 35
JA116_RS05935 1307124 .. 1307144 +  -4.7   -3.2568   ATCCGTTATTGGTCT           GCGGGTGA CATTTT TC-CCCGC            TGTACTTTTGTTTTT  53 73
JA116_RS05940 1307657 .. 1307669 +  -5.5  -2.61383   ATTCCGTTCCTTCTC                CGGTG ATC CACTG                ATTATCCGTACCACT  49 12
        rlmC 1308850 .. 1308876 + -14.5  -4.96848   GCCGGAATAAAAAAA        CGGGGCTG-CGT ACAG ACGTCAGCCCCG         TTTTTGTATGAGCGG 100 44
JA116_RS05980 NONE
        macA NONE
        macB 1319277 .. 1319324 +  -7.1  -3.18044   CACACCGGCTGAAAA TACGAATACGTCGCGG-AATGAC GATT GACATTACCGCGACG-ATCCGCA TAATTTTGTAAAATA  62 44
        clpS 1320699 .. 1320712 +  -2.3   -4.2558   GGTGAGGATGATAAT               GACAG CAGC CCGTC                TTTTGATGAGCCGTC  58 503
         lrp 1329435 .. 1329459 + -14.4  -3.39521   TTATGCATACAGTTT          CAACGCTGAG CTACC CTCAGCGTTG          TTCCGTTTTACTGAC 100 91
JA116_RS06040 1333107 .. 1333126 + -11.4  -3.05997   AACTTTTAATGACAC            CGCTGCCT GAAA AGGCGGCG             TCTGATTTATCCGAA  83 32
        lolA 1333767 .. 1333786 +    -5  -2.82775   CGCTGGACGATCAGC            GTCAATGA GGCG TCAGTGAC             TAACTTTTCTCTCGA  49 18
JA116_RS06050 1335194 .. 1335210 +  -6.5  -3.86822   ACTCAGAATGTTCAT              CCTGCAT ACA GTGCGGG              TTTCTGGGCGGATTA  65 94
        serS 1336668 .. 1336691 + -12.4  -5.77988   TGATCTGATAAAAAA          TCCCGCCGGT GTAA ACCAGCGGGA           TTTTTTTATCTGTAT 100 59
JA116_RS06095 1345555 .. 1345565 +  -5.4  -4.00407   TTATGACCATAGCTT                 TCCA GGA TGGA                 TTTCACTTTTTCCAT  65 124
        serC 1353115 .. 1353140 + -14.7   -5.2197   TTGCAGACATTTTTC         CGGGACCGGAT TGAT ATCCGGCCCCG          TTTTTCGTTTTTATG 100 45
        aroA 1354475 .. 1354492 +  -4.1  -3.30243   AAGCGCTGTTCCGCG             CACAGGA CGTT TCCTCTG              TTGTCACAGATGCGT  51 43
         cmk 1355280 .. 1355315 +  -4.3  -3.31361   AAACAAAATTTGCGG    GAAATCTGACTGAAAA CGTGT TTTTTAGT-AGGTTTC    TGTATTCGTTTTTGT  51 42
        rpsA 1357174 .. 1357195 + -13.7   -4.4891   AGTAATTAAGCAGCG           GCAGGCCGC GCAA GCGGTCTGC            TTTTATGATAATCAG 100 36
        ihfB 1357536 .. 1357552 + -12.3  -5.40072   CAGAGATAATAAAAA              TGACGCC GCC GGCGTCA              TTTTTTTGCAAAAAA 100 48
JA116_RS06145 NONE
        msbA 1361955 .. 1361975 +  -3.9  -2.83715   ACAGCTCTATAATAT            GCAGTTTGG TCA CTAAGCGGC            TCTGCTGATGATCGA  45 10
        lpxK 1362961 .. 1362978 +    -2  -4.99638   TTCCTCATAAAAAAT             GCATAA AGGGGC TTGTGC              TTTTTATCTGAATGT  68 20
JA116_RS06160 NONE
JA116_RS06165 NONE
        kdsB 1364594 .. 1364634 +   -15  -3.45396   AGCGATATCAGTTAT AAACAAAAACGCGGG-TCA CTTC TGAACCCGCGTTTTTGTTG  TCTTCTATTCCTGTT 100 40
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 1372990 .. 1373017 + -16.4  -5.36441   GGGTTTTCTCTGAAA        CGGATGAGCGTA TGAC TGCGCTCATCCG         TTTTTTATATCAGCG 100 53
        aphA 1374717 .. 1374740 +  -9.6  -4.25527   CTGCCGGTCATATAA          CAACGCCG CCGGAGTA CGGCGTTG           TTTGTCTCTGTTTAT  88 48
        ldtD 1376753 .. 1376779 + -12.4  -5.64304   AGCTGATCATATTAA         GCCGCTTATTTA TTA TCAATAAGCGGC         TTTTTTCTTATATTA 100 35
JA116_RS06215 1377730 .. 1377774 +  -4.4  -2.59876   CATATGGATACAGGA CCGGTCAGAACGTGGTAAT CTGTTGTT ATTACC-CGTATTAACCGG AGTTTTGTGTCATGC  45 8
JA116_RS06220 1378459 .. 1378477 + -13.2  -5.24129   AGTAAAGATGAAAGG             TGCCTGAC GTT GTCAGGCA             TTTTTTATGAGCCGG 100 51
JA116_RS06250 1386186 .. 1386204 +  -2.3  -3.06583   CCACAGGTAGCATTT             TGGCCCA CATTC TGTGCCG             TGTTGGACATATTCT  42 83
        pepN 1389063 .. 1389078 +    -9   -6.3578   CTGATACAGACAAAA              CACCTC TCCG GAGGTG               TTTTTTTTTTGCACT 100 178
        pyrD 1391644 .. 1391666 +  -7.7   -4.5002   CACTATTATTCCTGT           CAGGGGG TTTATTTTT CCCCCTG           TTTCTTCTATATTTT  82 45
JA116_RS06270 1392481 .. 1392509 +  -8.8   -5.3236   ATTACGCCAAAAAAA        TACCCCCTGTGG TTTAT CTGCCGGGGGTA        TTTTTTATCGGTTAT 100 149
       rlmKL NONE
JA116_RS06285 1397850 .. 1397873 +  -8.9  -3.08211   ACGCTGGAAGCAATG          CAGAGCGGGA ACTGA TCCCGC-CTG          TGATTTTGGAGAAAT  69 11
        pqiA NONE
        pqiB NONE
        pqiC 1401415 .. 1401447 + -19.4  -3.41051   GTAAGTAATTTGTCA      TTCACTCTCTGCAC AGGGC GTGCAGAGAGTGAA      TTATCATCAAAATGA 100 33
         rmf 1401944 .. 1401959 + -10.4  -5.03314   TTGAAGGATAAAAAA              CCTCCG CATG CGGAGG               TTTTTTACGGATAAC 100 47
        matP 1405059 .. 1405084 + -14.9  -2.97166   GGAACGGACAAAAAA         TAAACCCCATC CGGA GATGGGGTTTA          TATAATTCATTGCAT 100 23
JA116_RS06335 1407918 .. 1407928 +  -8.2  -2.66711   GAACGTTATGATTTC                 CCCG GGG CGGG                 ATTATCCGTTCTGCG  63 58
        helD 1412780 .. 1412793 +  -3.1  -4.00038   TTGCGCTTAACCCAG               TCCAG TAAT TTGGA                TTTATAGTGATCATG  55 446
JA116_RS06355 1413420 .. 1413443 + -10.2  -3.25877   ATAAGCAAAAATAAA          GCCCCGGCAT GTGA GTGGCGGGGC           TCTTCGTGTATTAAT  78 37
JA116_RS06365 1414312 .. 1414370 +  -3.7  -2.92712   GTTTTGTCGCCTGTT TGGCGGGGCCTTTCGGAAACAGGCGGTA CAGA TAACGGCTGTTCCCGCGCT-CCTCGCCA TACTTCTGTGTGATC  45 83
JA116_RS06375 1414938 .. 1414953 +  -3.2  -3.61105   TCTTACAAGAAAATC              GCTTTC TTCT GAACGC               TGTTGTTATCTTTCT  51 93
JA116_RS06425 1426139 .. 1426154 +  -4.7  -4.43832   ATCAGGGTTATAATC              CGGAA AACCTA TTCCG               TTATTTTCTGTATTC  68 223
JA116_RS06430 NONE
JA116_RS06435 1427883 .. 1427893 +  -2.4  -3.53012   AGTAGCAGCTTCTAT                 CCGG TGC CAGG                 TTTCCGGCGGAAAGA  47 502
JA116_RS06450 1428521 .. 1428531 +    -4  -3.50854   TAATTACTAAAAAAA                 TATG AAT CATA                 TTGGTTAATTATTGT  52 21
JA116_RS06455 NONE
        fimA 1430188 .. 1430213 + -16.9  -3.60971   CCGTTAGCGCGTTAT         CAGTGGCCCGG GTGA CCGGGTCACTG          TTTGCCGATTGGAGT 100 62
JA116_RS06465 1430790 .. 1430801 +  -2.2  -3.70149   ATAATAATTAAATAC                TCTC TGCG GGGA                 TTTAAATAATGTACA  49 37
JA116_RS06470 1431498 .. 1431511 +  -2.5  -3.04032   CACCGGTAATCAGCG               TTAAT TCAT ATTAA                TCATTATTATCTTAT  43 12
JA116_RS06475 1434161 .. 1434172 +  -2.2  -3.93236   CCCGATCAGCAATAT                CAGT GCCC GCTG                 TTTATAACATTAATC  53 7
JA116_RS06480 NONE
JA116_RS06485 1435776 .. 1435786 +    -4  -4.19735   ACCTTTACGCTGGAA                 TATC TCT GATA                 TTTAATTTTCAGGAA  61 17
JA116_RS06490 1436564 .. 1436574 +  -8.2  -3.20218   TACATTTGCTGTACG                 CCGG TAT CCGG                 TATCATTTTTAATCC  67 3
JA116_RS06525 1444438 .. 1444450 +  -6.2  -4.60797   CGTCCAGAATTCACG                CCGG AACTG CCGG                TTTTCTGTCTGCCAG  77 443
JA116_RS06535 1446842 .. 1446881 +  -6.5  -5.93809   CAGACTGATATCACT  CAGATGACTGCCGTGGT GAGTAA ATCACGGTAGTAATCTA   TTTTTTTTCTCCAGG 100 33
JA116_RS06545 NONE
JA116_RS06550 1448756 .. 1448787 + -10.2  -2.64651   GCCGGTCTCCGTACT      GTACTCTGCTGACAG CGA CTGTCTGCAGGG-AC      TGACTTTGCAGGGTT  74 90
        speC NONE
JA116_RS06560 1451561 .. 1451582 +  -5.9   -2.8294   TTTCCATTCCTGTTG           GTTATCGGA CGAA TCAGATAAC            TCATTATACGGACTC  53 49
JA116_RS06565 1452672 .. 1452685 +  -3.1  -2.66216   AAGGATGATTGCCCG               CTGAT GCCG GTCAG                GTTATGCTCATGACC  42 33
JA116_RS06570 1453667 .. 1453678 +  -4.4  -4.27512   CGCGGTATTATCCGG                TGAG GTAT CTCA                 TTATTTATTCTCCGC  63 50
JA116_RS06580 1455653 .. 1455676 + -10.2  -5.40072   TGAGTTGCATTTCCT          GCCCCGCCGTC ACT GTCG-CGGGGC          TTTTTTTCACCCGCA 100 84
JA116_RS06590 1457404 .. 1457416 +  -4.8  -3.86015   CGTGAAACAAAACGA                CAGC CTTGC GCTG                TTTATCCGGAAAATA  60 292
JA116_RS06600 1458246 .. 1458260 +  -5.7   -4.3208   CAGGTATTATTCCCG               GTGTC CGGGA GACAC               TTTTCACTTCTGACA  70 113
JA116_RS06605 1458741 .. 1458762 + -13.7  -3.28712   TAACAGCAACCCCGG           CACCGGCGG TTAT TCGCCGGTG            TTATCCCGCAGCCAC 100 45
        yjiM NONE
JA116_RS06625 1461942 .. 1461953 +  -3.6  -3.19091   GGCAGCCGTAACCTC                CGGG GATC TCCG                 TTCATGAATGACTAT  48 7
JA116_RS06630 NONE
        nifJ NONE
JA116_RS06640 1466338 .. 1466360 +  -6.5  -2.92449   GAAAATAAATAATCA           TCAATAATA TTAAT TATTATTGA           TGTGTAAACTATTTC  56 29
JA116_RS06645 1466800 .. 1466820 + -15.5   -5.0925   CGCTGTTATTTTTAA            CGGGCTGTA TGA TACAGCCCG            TTTTTACTTTTCAGC 100 45
JA116_RS06655 NONE
JA116_RS06660 NONE
JA116_RS06665 1469400 .. 1469425 +  -9.9  -3.87373   GTCTGATAACACAAA         GCAGGA-AAAAC CAC GTTTTATCCTGC         TTTGTCAGCAATCTC  84 165
JA116_RS06700 1475562 .. 1475574 +  -2.7  -3.97042   GTTTTCATTTTAAAT                CAATG GGT TATTG                TTTGATTGCTCATCA  54 450
JA116_RS06705 1476549 .. 1476570 + -14.5  -3.58428   CAGATATATCTATTG           CAGGGCAGA TAAT TCTGCCCTG            TTAATTATCTTTAGG 100 41
JA116_RS06710 1477251 .. 1477261 +    -4  -3.76107   GAAAATTAAATCTGT                 TTCA GGC TGAA                 TTGTGATTTTTAAAT  57 9
JA116_RS06715 1479886 .. 1479919 +  -3.1  -3.08471   CCGCTGACCGGAATA     TGACA-ATACCGGCAG ATA CTGCCGGTAAATAGCA     TTAAGTGAGGTTATG  46 34
JA116_RS06720 1480962 .. 1480978 +    -5  -3.54935   TCTTTCTTTTTGCGG              CTGGCG TCTTC CGCCCG              TTTGCGGCGCATTTC  55 108
        ssrA 1482874 .. 1482897 + -14.6  -4.51238   CACCAAATAAAACAA          GGGGTTACGC GAAA GCGTAGCCCC           TTTGTCTTTTCTGAC 100 36
JA116_RS06745 1484145 .. 1484157 +  -7.7  -3.95073   TTAACTGAACTTTTT                GTGCA GAC TGCAC                TTTATCGATATACAG  72 512
JA116_RS06755 1485708 .. 1485726 +    -3  -3.30145   GATGCAGATACTGGC             GGATGCTG AAA CAGCACGC             TGATTTTTCCTGATT  47 4
JA116_RS06760 NONE
JA116_RS06765 1488729 .. 1488760 +   -13   -4.3467   CGGACTGTGAAGTGA      CCCCTGATAGCCGG ATAA CCGGTTATCGGGAG       TTTTAGTGTCAAAAT 100 45
JA116_RS20250 1492921 .. 1492970 +  -8.2  -4.78237   GACGGTAAAACGATA TGCAGAGATATAAAAAAACGGGGA AGAT TCCCCGTATTTTTAT-TG-CTGCA TTTTGTTATCAGATA 100 273
        grpE 1498552 .. 1498570 + -11.7  -4.90455   TTGTCAGTAATCACA             TGCCGCC GCAAG GGCGGCA             TTTTTGTACCTGTAT 100 57
        grcA 1500055 .. 1500070 + -10.4  -5.76633   TCCTTGTTCCGAAAA              CCACGC TCTG GCGTGG               TTTTTTTATGTCTGA 100 56
JA116_RS06825 1501017 .. 1501033 + -12.3  -4.61873   GTAAGCATAAAAAAA              CGGACTG TGA CAGTCCG              TTTTCGTTTATCAGA 100 37
JA116_RS06835 1503504 .. 1503528 +  -5.1  -5.40072   AATGTGTAATAAGGA          TCACAAAAAGG ATC CTTTTTTGTAA          TTTTTTTAAAAGAAA  84 225
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 1506396 .. 1506420 +   -13  -3.05022   ATGCGATTAAAAAAA          TAACAGCCTG AATAA CAGGCTGTTA          TCTGTCTCTCAGCGA  95 99
        lepA NONE
        lepB 1521614 .. 1521672 + -13.3   -4.3898   GTTGCGGGGAGCCAG TGCAAACGCAACAGTTTTGTA-TCGCGG TTTT TCGCGGCTACAGGTCTGTTGCGTGTGCG TTTTATAAACATCCT 100 114
         rnc NONE
         era NONE
        recO NONE
        pdxJ 1524805 .. 1524815 +  -8.2  -2.79842   ATGAAAACCCTGCTG                 CGGG AAG CCCG                 TCGTTAATGGCTATT  64 8
        acpS 1525215 .. 1525230 + -11.8  -4.21343   AATACCTGACAGTTG              CGCCCG GTTG CGGGCG               TTTCTGTCTGTTCAG 100 32
JA116_RS06910 1526895 .. 1526914 +  -2.2  -4.09586   AAATAAAAAAGATAT            TGTTAAAG TCCA CTTTAGTA             TGTTTTTCATTCTGT  55 144
JA116_RS20260 1527241 .. 1527257 +    -3  -3.30452   GTATTTGCCATCAGA              TATTCC AACCG GGGATA              TTAATGGTGTTCTTC  47 77
JA116_RS06920 1527711 .. 1527734 +   -14  -4.04206   GAGCTGTGTAAAAAA          TAACAGAGGG AATG CCCTCTGTTA           TTTATGTCAGAATAC 100 23
JA116_RS07015 1551940 .. 1551969 + -15.9  -3.32769   TAATGTGGCCACTGA       CACCACAAATTCC TCCG GGGATTTGTGGTG        TTCCTGCTTTACCGC 100 38
JA116_RS07025 NONE
JA116_RS07030 NONE
JA116_RS07035 NONE
JA116_RS07040 1558733 .. 1558753 +  -2.5  -3.03124   CGCTGACCCGTAGGG            CGAGTATCA GGA TGATACGAG            TATTCCGGACTGCAC  43 35
JA116_RS07045 NONE
JA116_RS07050 1559866 .. 1559886 +  -4.7  -3.13403   TTGCTGTTTAATTGC            CCGGATA TCCTCAC TGTCCGG            TATTAATACCAAACA  49 176
JA116_RS07060 1561057 .. 1561076 +  -5.7  -3.30124   TACGCGATGTAATAA            TGCCGGT AAGAAA ACCGGTA             TTATGACCGGTCAGG  57 81
JA116_RS07120 1572361 .. 1572376 +  -6.8  -5.60993   CAGAATAATACATAA              GGTCAC TGCG GTGGCC               TTTTTTTATGCGGAC 100 43
        trpS 1574973 .. 1574993 +  -3.3  -3.97368   GGTCTATTATACGAA            CCATATCTG TTT TATATATGG            TTTATCAGTTAAGGA  56 92
JA116_RS07130 NONE
         map 1576021 .. 1576042 +  -7.2  -5.60993   ACAACAGAGTGTAAA           AAGCCCGG CTGCGA CCGGGCTC            TTTTTTTATCAGAGC 100 56
JA116_RS07145 NONE
        leuE 1579029 .. 1579042 +  -2.3  -3.47573   AAGAAACTGCCTGCC               CGGCA AAAG TGACG                TTATACTGTGCCTGA  47 40
        tadA 1579619 .. 1579642 + -16.8  -4.45068   GTGATCAGTCTGGTG          CGGCAGAGGT CAGA ACCTCTGCCG           TTTCTTCTTCCGGCT 100 37
JA116_RS07170 1587943 .. 1587954 +  -2.2  -4.36914   ATAAGCAACTACCGG                CGGA AAAT TCTG                 TTTTCTGCCGGCAGG  58 48
JA116_RS07175 NONE
JA116_RS20265 NONE
JA116_RS20270 NONE
JA116_RS07185 1593642 .. 1593680 + -14.7  -4.47551   GGCACCACCTTAATC  TCACTGGCGGGACGGCAG GAAA CTGTCGTCCCGCCA-TCA   TTTTATACCTTCCCT 100 496
JA116_RS07190 NONE
        qseG NONE
        glrR NONE
JA116_RS07205 NONE
        glnB 1599579 .. 1599609 +  -8.3  -6.06529   GGTCAATCATATTGA      TCCGGCGGCTGTTA TTTC TGACT-CCGCCGGA       TTTTTTTTATCTGTC 100 58
JA116_RS07215 1600034 .. 1600053 +  -8.6  -4.15654   ATTGACTTCAGCACG            TACGCTGA ATAC TCAGCGTG             TTGTTATTGTTGTTC  79 148
JA116_RS07225 1602911 .. 1602934 +  -8.9  -5.59879   CTGATGTAACCAAAA          CCCGCTT-CG TTCGC CGCAAGCGGG          TTTTTTGTATTTCTG 100 54
        betI 1606996 .. 1607008 +  -4.1  -3.36273   ATGAAGCTGGGAACA                GATTG AAT CAGTC                TTAATATTAAAGGAA  51 20
        betB NONE
        betA 1610243 .. 1610263 + -14.1  -5.00616   CACTGAAATAAAAAA            CGGTGGTTA TGT TAACCACCG            TTTTTTAAAAGAGGG 100 48
        trmJ 1612021 .. 1612031 +  -2.4  -3.31263   CTTCACCATTTATCA                 CGGG GAT CCGG                 TTATGAGACTGACAT  45 97
        iscR 1612525 .. 1612538 +  -2.3  -3.14132   CAATCTGCAAGCATA               AGCAG AAAC CTGCG                TTAATAACGCAACCG  43 25
JA116_RS07270 1613776 .. 1613786 +  -5.4   -3.1506   ATTAACAGCATTGAA                 TGGT CAC ACCA                 TTAATCAGACGGTTT  53 11
        iscU 1614244 .. 1614281 +  -7.1  -3.00946   GGTAAAACAATAAAA   TAATGGCGGAT-ACTGAT CTC ATCGGTCATCCGCCATAC   TGGTTTATAGAGCGA  61 67
        iscA 1614610 .. 1614623 +  -2.3   -3.5594   CGAATGCGGCTGCGG               CGAGA GTTT TCACG                TTTAACCGATCCATT  47 7
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 1617605 .. 1617656 + -13.3  -2.74192   AATGATGTCTTTTGT TACGCGCATCAG-G-CCGCAC AATTGTGTTAGC GTGCGGTCTCTGATGCGCGTA TGCTGTTACCGCCTC  93 36
        pepB 1619080 .. 1619101 + -12.3  -4.98522   GATTCTGCTGTAAAA           CGGTCACAC ACAC GTGTGGCCG            TTTTTCTGTAACATT 100 58
JA116_RS07310 1619598 .. 1619633 +  -8.6   -2.9856   TCCGGATGGTGAATA    TGTATGGTGCATATATT CAG AATA-ATGCACTATACG    CTTGTTTAGGCTTTG  65 51
JA116_RS07315 1624808 .. 1624833 + -10.6  -4.96848   CCTTTATAACAAACA         TGCCCTTATA ACAAAC TATAAGGGCA          TTTTTATCTCAGAAA 100 98
        pbpC 1627222 .. 1627232 +  -3.2  -2.78526   AAAGTGTGATACAGA                 CGGA AAA TCTG                 TGATCTGTTATCAGG  43 67
         ndk 1627875 .. 1627902 + -14.2  -4.56597   TCAGTGAATTCAGTC        TCAAAAGCCCGG TAAT CCGGGCTTTTGC         TTTTTACCGGACAAC 100 80
JA116_RS07335 1629809 .. 1629828 +    -5  -2.75992   CCGGTGAACCAATTT            CTGTCAAA ACAG TCTGACAG             TAATATTAAGTAACA  49 9
JA116_RS07340 1630331 .. 1630354 +  -6.7  -3.96148   ATACGGAACTTCGGT          GCGCGGAAGG GCAGA TC-TCCGCGC          TTTCTCGTAACCAGA  69 109
        rodZ 1631362 .. 1631378 +  -3.8  -3.77196   AGCCGGTGAATAATT              GATTTA TAAAT TAAATC              TTTACTACATAATAA  56 28
        ispG 1632571 .. 1632593 + -13.5  -4.78933   AAGAGTAATCGCGGA           CCGGCTCAT GACTG ATGAGCCGG           TTTTGTCTGTTTTGG 100 33
        hisS NONE
JA116_RS07360 NONE
        bamB 1635889 .. 1635911 + -12.7  -4.03321   GAGTGGTTTCATTGA           CGGCTCCTG AATGA CAGGGGCCG           TTTCGTCTTTAATCT 100 89
         der 1637489 .. 1637506 + -11.3  -6.02914   CGTTAACAAAGAAAA             CCCGCAT TTTA ATGCGGG              TTTTTTTTATGTCCG 100 35
JA116_RS07385 1640409 .. 1640423 +  -2.8  -4.00042   CACACGGCTGTTATC               CTGC AGATAGG GCAG               TTGTTTGATGACAAA  55 253
JA116_RS07395 1641386 .. 1641399 +  -2.4  -2.93164   CAATGACAGATGAAC               TTGC GGAATA GCAA                TGTAATTCCGTGTCA  42 45
JA116_RS07400 1642443 .. 1642470 + -11.2  -4.64464   TACATCCCTGTAAGC        TCAGGCGCGCCA TCCA TGGCGCGCATGC         TTTTCGTTTCCTTTG 100 103
JA116_RS07405 1642846 .. 1642870 +  -5.8  -2.89563   TATATAATTCCATAA          TGGTATAAGC AAATG GCTTGTATCA          CTTTACTGATATATG  53 64
        cysP NONE
        cysT NONE
        cysW NONE
JA116_RS07425 1646718 .. 1646736 +    -3  -3.84719   TCCGGTTGCATATTG             CCTTGCTG CGG CGGTATGG             TTTCAGTTTACGGCT  53 54
        cysM 1648136 .. 1648167 + -10.1  -2.93878   CAGAGGTATTGAGAT      GGCAGATGTCCCG GTATGG CGGGACACCTGCG       TATGATTAGCTATTG  73 512
JA116_RS07455 NONE
JA116_RS07460 1651951 .. 1651972 + -10.1  -4.71426   CGAAATAATACTGAA           CGGGAATCC TGAG GGCTTCCCG            TTTTCTTGATAACCG 100 33
        tssB NONE
        tssC 1654203 .. 1654230 +    -9  -2.94218   CCCTGGTCACATCCC        CCCGGCGGGTGG TTAT CCGCCTGCTGGA         TCTCTCCTGGCCGCT  68 243
JA116_RS20280 NONE
JA116_RS07485 1655731 .. 1655750 +  -4.2  -3.33151   AAACCCGGAGGCCGC            CGGTGCGT GACA ACACACTG             TATTACTTTGAACAG  51 16
JA116_RS07490 NONE
JA116_RS07495 NONE
JA116_RS07500 NONE
JA116_RS07505 NONE
        tssJ NONE
JA116_RS07515 NONE
        icmH 1663694 .. 1663706 +  -3.3  -3.21276   CAGCAAGTGAGTGAC                GCGCT GAC AGCCC                TGTTCTGAACAACGG  46 5
JA116_RS07525 1666921 .. 1666934 +  -9.5  -2.53449   CCGCTGACAGGTGAG               GGCGG AACA CCGCC                GTATTGTGGCACTCT  68 27
        vgrG NONE
JA116_RS07535 NONE
JA116_RS07540 NONE
JA116_RS07545 1670698 .. 1670732 + -10.7  -3.76167   CGCTGAATCTGACAA     CCGGTGCTGTAGTGT AAAAG GCAGTACGGCGCCGG     TATTTTCCGTTATGC  88 35
JA116_RS07550 NONE
JA116_RS07555 1672723 .. 1672737 +  -2.7  -4.58466   GTCTTTATCTTCATC               CGCAG ATTGG CCGCG               TTTTCTGATTGTGCC  65 369
JA116_RS07565 1674414 .. 1674429 +  -7.5  -2.69647   ATAAGATTTGACTGT              CCGGC AACAGC GCCGG               TAGTGTATCACCGTT  58 56
JA116_RS07570 1674817 .. 1674833 +  -9.3  -2.66634   ATTTTCCCTGCCTGT              GCCGGCG GGT CACCGGC              TGATGTAATACACTG  68 1
        ttrB NONE
        ttrC NONE
        ttrA 1687420 .. 1687437 +  -7.7  -5.40072   TAATGCAATACCTCT             GACCACT TCCG GGTGGTC              TTTTTTTGGCCGCAG 100 88
JA116_RS07630 NONE
JA116_RS07635 1690319 .. 1690341 + -13.4  -3.13728   GTGTCAGAAAGCAAA           AAGCCCGCTC AGT GAGCGGGCTC           TTAAATCTGGCTCCT 100 362
        cspE 1692312 .. 1692333 + -11.5  -6.08563   CAAACCGAATTCCAA           GCCTGCCGC GTAA GTGGCGGGC            TTTTTTTTATATCTT 100 49
        dsrB 1692735 .. 1692759 +  -4.1  -5.37345   GGTACGATGATGGCG          GGCAGCACCTC TCT GTGGTACTGCA          TTTTTTATAATTACA  81 173
JA116_RS07675 1693694 .. 1693714 +  -8.2   -4.4458   AAACCTTAAGGTTTG            GCCGGTGG TAAAT CCACCAGC            TTTATTCTGTGTATC  87 85
        flgB NONE
        flgC NONE
JA116_RS07715 1701796 .. 1701811 +    -4  -3.53855   AAAAGAAAACCCAAT              TGTCAT GGAG GTGACA               TGTCTTTTTCACAAG  52 40
        flgE NONE
JA116_RS07725 NONE
        flgG 1704607 .. 1704637 + -14.7  -4.65895   ACAACTGTAATCCCT       GTCCCGGCGCTGA GATTA TCACCGCCGGGGC       TTTTTGACTGAGACA 100 31
        flgH NONE
JA116_RS07740 NONE
        flgJ 1707536 .. 1707575 +    -8  -3.38046   TTTTCTGACGGTTTC  CGGCGTAAAAAATGCAGTG AAA CACTAAAT-TTTTGCGCCG  TCTTTCCGATAACAA  66 33
        flgK NONE
        flgL 1710320 .. 1710338 + -11.7  -5.60993   GTACTGAATTCCTTT             GGCCGTC CCTGC GACGGCC             TTTTTTTGTGCCGGA 100 55
JA116_RS07765 1712232 .. 1712260 +   -14   -5.7946   ACGCCATTACCGGAG        CCGGTAATCACT TTCTC GGTGATTACCGG        TTTTTTTATTAACAG 100 94
        fliE 1724230 .. 1724242 +  -3.4  -3.69359   GATAATTGTGATTAC                CATG TTTGC CATG                TTCTATACTTTTAGT  51 352
JA116_RS07840 1724884 .. 1724897 +  -9.5  -4.61482   GGTAAGAGTAAATCA               GCCCC GGAA GGGGC                TTATTTTTTGCCGGA 100 55
JA116_RS07845 1725831 .. 1725854 +   -14  -4.42653   GTCAACCGGCAGAAA          CAATAAGCCC GGCG GGGCTTATTG           TTTTATCAGTCCGGT 100 49
JA116_RS07855 1727260 .. 1727284 +  -7.9  -4.74801   GCAGATAAATAAAGA         GAGCGGG-TC ACTTCA GATCCCGCTC          TTTTTGATCGGCTTA  91 62
JA116_RS07865 NONE
        crcB NONE
JA116_RS07875 1729216 .. 1729268 +    -5  -6.00814   AAATACCGCCGGATA G--TAAAAAGTTCCTGCCGGACAG GGAACAA CTGTCCGGCAGGAACTGATCAGGC TTTTTTTTCATTATT 100 25
JA116_RS07895 1733072 .. 1733091 + -13.6  -5.76633   CTGTTTTTTATTTTG            GCCGGAAC CTCT GTTCCGGC             TTTTTTTATGTCTGA 100 68
JA116_RS07900 1734392 .. 1734409 +  -9.9  -5.65177   TTAAGGTATTTAAAA             GGTCAGA ATAT TCTGACC              TTTTTTTATAGATGT 100 55
JA116_RS07905 1735459 .. 1735471 +  -3.4  -3.53012   GACTACACAAGGCGC                CAGA ATATG TCTG                TTTCAAAACAAAAGA  49 76
        fliZ 1736021 .. 1736036 +    -9  -4.87318   TACTGATAAAACAAA              GGGAAC TTTC GTTCCC               TTTTTCCGTTTTAAG 100 69
        putP 1742084 .. 1742100 +  -5.7  -6.08342   TAGTCTGAAAAAAAA              ATCCGGC GTT GCCGGGA              TTTTTTTGTTTATTA 100 43
JA116_RS07930 1744524 .. 1744536 +  -4.7  -4.62085   CTGCGGGGAATACTG                CCGTG CCG CCCGG                TTATTTTTTGGCAAT  71 65
JA116_RS07955 NONE
JA116_RS07960 1749519 .. 1749531 +  -4.7  -2.90212   AATTGCGGTGATAAA                GGCGG GAA CCGCA                TCTGTCAGGTCATCC  47 239
        adeD 1752677 .. 1752701 + -15.1  -3.32844   GCATAAACGGAAAAA          GGACAGAGACG GTC TGTCTCTGTCC          TTATGAACTACAGCA 100 35
      aac(3) 1756772 .. 1756796 + -11.3  -4.73682   GGGGTAACCGGTGAA          CCGGTGCGGCG GAT CACCACACCGG          TTTTCTGTTATCAGG 100 34
        metC 1760476 .. 1760498 + -14.9  -3.29144   TGAGATAGAAAAGAA           TCAGCCCGG GGTGA CCGGGCTGA           TTCTCAGAAAGGTGA 100 38
        gyrA 1769524 .. 1769548 + -15.9  -5.27335   AGAAAAACCGATAAA          GCAGGAACAAT AAT ATTGTTCCTGC          TTTTTATTTACCCCG 100 68
        rcsC 1772528 .. 1772547 + -12.2  -4.67353   AGCCGGATAAAAAAA            CGCCATTC ATCT GAATGGCG             TTTTTGCATCGGTAC 100 52
JA116_RS08065 NONE
JA116_RS08070 1776321 .. 1776347 +   -11  -5.58522   CGGCACCATATTAAA         CCCGTTATATTT CAC AGATATAGCGGG         TTTTTCTTTTCTATA 100 33
JA116_RS08150 1786285 .. 1786307 + -10.6  -2.83345   CTGGTTAACTCACCA           TAGCCCACTC ACC GAATGGGCTA           TAATTAGTATCTGCG  75 33
JA116_RS08155 1787098 .. 1787118 +  -2.5  -4.59919   ATAGGCACAAAAAAG           CCCTC-GC GGGAGG GCTGGGGG            TTATTTTTCTGATTT  64 37
JA116_RS08175 1789590 .. 1789604 +  -2.8  -2.52623   AACCAAAAATCAGTA               GCTG AACGGCA CAGC               ATATTGTCGGGCGGG  41 44
JA116_RS08180 1790118 .. 1790137 +    -5  -5.14965   CAGTGATTTAGGAAA            GGGGAA TATACGGT TTCCCC             TTTTTTGATACAGAT  80 66
JA116_RS08185 NONE
JA116_RS08190 NONE
JA116_RS08195 NONE
JA116_RS08200 NONE
JA116_RS08205 NONE
JA116_RS08210 NONE
JA116_RS08215 NONE
JA116_RS08220 1794059 .. 1794069 +  -5.4  -3.16564   CCTGCACGGATGCTA                 TCAG TTA CTGA                 TTGGTAAGATACAAC  53 104
JA116_RS08230 NONE
JA116_RS08235 NONE
JA116_RS08240 1796428 .. 1796443 + -10.4  -4.84527   GAAGCATGCATAACA              GCCCTC TCCG GAGGGC               TTTTTCATATCTGCA 100 305
JA116_RS08245 1796916 .. 1796928 +  -3.3  -2.50779   TCAGCGCAGAGATAC                TGTGC GCG GCACC                CTATTAACTTCTAAT  42 77
JA116_RS08250 NONE
JA116_RS08255 NONE
JA116_RS08260 NONE
JA116_RS08265 1798373 .. 1798392 + -11.4  -4.59773   AGATAGAACAGCAAC            GCCTCGCT AAAT AGCGGGGC             TTTTTACGAATAACC 100 16
JA116_RS08270 1798832 .. 1798846 +  -8.5  -5.60689   CATCAATTTTAGGAA               CCCGC CAAGC GCGGG               TTTTTTATTGTCTGC 100 45
JA116_RS08275 1799770 .. 1799780 +    -4  -3.10056   AGTTGAGAATCGCTC                 TATC AAG GATA                 TCTTCGATGGCTAAT  49 1
JA116_RS08280 1801113 .. 1801129 +  -4.3  -2.95223   GGACTGCAAATCAAC              CCCGCAG CAC TTGCAGG              TATCTGATGAAATTA  47 2
JA116_RS08285 NONE
JA116_RS08290 1803409 .. 1803424 +  -3.2  -3.04398   ATTGCCGGTGCGGCA              GCAAGG CTAT CCTTCC               ATTTTAAACAGAGGG  44 3
JA116_RS08295 NONE
JA116_RS08300 NONE
JA116_RS08305 NONE
JA116_RS08310 1806599 .. 1806614 + -10.4  -5.28176   TCGTTGTTAATCACT              GCCACC TTCG GGTGGC               TTTTTTATAGGTGGA 100 50
JA116_RS08315 NONE
JA116_RS08320 NONE
JA116_RS08325 NONE
JA116_RS08330 NONE
JA116_RS08335 NONE
JA116_RS08340 NONE
JA116_RS08345 NONE
JA116_RS08350 1811371 .. 1811382 +  -7.2  -5.60993   TACAGAAAGATAACA                GGCC GTAA GGCC                 TTTTTTTATGGGGCA 100 230
JA116_RS08355 NONE
JA116_RS08360 1814470 .. 1814480 +  -3.2  -3.06796   AGTAACAGCATCACG                 CCAT CAA GTGG                 TTAAATAAGGTAGGA  44 113
JA116_RS08365 NONE
JA116_RS08370 1815405 .. 1815418 +  -9.5  -3.34043   CCCATAAACGACTAA               GCCCC GGAA GGGGC                TTATCCGGTGCTGAG  74 94
JA116_RS08375 1816381 .. 1816394 +  -9.5   -5.4833   TCAAATGAAGATTAA               CCCGC TCAG GCGGG                TTTTTTGTTGCCTGC 100 26
JA116_RS08380 NONE
JA116_RS08385 NONE
JA116_RS08390 1818423 .. 1818436 +  -3.1  -3.53563   AATCTCAAGCTCCCG               TTCTG GCCG CAGGA                TTTGGCGGGCGGTGT  49 39
JA116_RS08395 NONE
JA116_RS08400 NONE
JA116_RS08405 NONE
JA116_RS08410 NONE
JA116_RS08415 NONE
JA116_RS08420 1823645 .. 1823669 + -18.7  -5.46706   GGCACCATATTAAAA          CCCGCGATATC TTT GATATCGCGGG          TTTTTCTTTTGCGCT 100 481
JA116_RS08435 1825376 .. 1825409 +  -3.3   -4.8236   ACATTGGTTATTTTG     TTCTGACTAACG-TTA ATG TAATCGTTTGTCAAAA     TTATTTTTTTCAGTA  68 510
JA116_RS08455 1827994 .. 1828008 +  -4.2  -2.78216   CAGATAACCACTAAT               TCTGTG TTT CACTGA               TAGTTGCTCCGGATA  46 27
JA116_RS08460 1828668 .. 1828689 +  -8.7  -5.19879   TTTGATATATCAAAA           GGCACTCAGG ACA CC-GGGTGCC           TTTTTGTATTTCCGG 100 57
JA116_RS20290 1829757 .. 1829767 +  -3.2  -2.52623   TGAATCTCAGACGCA                 TACC CCC GGTG                 ATATTGTGGCCGCAG  42 38
JA116_RS20295 NONE
JA116_RS08475 NONE
JA116_RS08480 1831972 .. 1831987 + -11.8  -5.02074   AATCGTTAATCACAG              GCGGGC TGCG GCCCGC               TTTTTTACGGAATAA 100 32
JA116_RS08485 NONE
JA116_RS08490 NONE
JA116_RS08495 NONE
JA116_RS08505 NONE
JA116_RS08510 NONE
JA116_RS08515 NONE
JA116_RS08520 1838368 .. 1838390 +  -4.8   -3.1944   GCAGCGCGGTTCAGG           TGGTGTTTGT ATG ACACACTCCA           TTCAGTCGTTTTCAT  51 12
JA116_RS08530 1840306 .. 1840332 +  -9.4  -3.21354   CAGTGAATATGCGTA         CCGGCGGGAAAT ATT GTTTCTCTCCGG         TTACTGCCTGTATCA  72 52
JA116_RS08540 1841760 .. 1841776 +  -2.2  -3.62535   GTATCCGTAAATTCT             G-CTCCG GTGC CGGGGAC              TTATCTGCTGTTTAC  49 86
JA116_RS08545 1842411 .. 1842423 +  -2.7  -3.08679   GCCATTGCGGAGGAA                TAATG CGT CGTTA                TATTACCTGGCCGGG  44 41
JA116_RS08550 1843466 .. 1843488 +    -2  -3.18735   GGTGACAATATAAAA           TACCGTAAGT GGA ATTTATGGCA           TTACTGAGGTGTTCA  43 491
JA116_RS08565 1844236 .. 1844250 +  -6.4  -3.81951   GTCCGGACTGCGGAT               TTCGGA TTA TCCGAG               TTTAATACTGTCAGA  63 50
JA116_RS08575 1845572 .. 1845607 +   -17  -3.36492   CAAAATAAGTATTAT    CAG-ACTGCCGGTGCTG ATA CATCACCGGCAGTACTG    TTATACGGTTAACGG 100 33
JA116_RS08590 1847684 .. 1847698 +  -2.1  -4.07885   GTCAGGATCTCTGAT               TTAGC CTGGC GCTGA               TTTTGGGAGGAGATC  56 27
JA116_RS08605 1850360 .. 1850376 +  -2.2  -4.57569   GGCGTCCACCGGATG              CTGTCA TTCCC TGCCAG              TTTTTAAAGGAATCG  63 508
JA116_RS08625 NONE
JA116_RS08630 1853789 .. 1853806 +  -7.7  -3.54653   TGATAGCGGCCATCG             GCC-GGAG CAT CTCCAGGC             TTATCTGATGCAGCT  64 112
JA116_RS08655 1858299 .. 1858323 +  -4.1  -4.56597   GCTGTTCTGTCCCCA          CGGACGGGAGC CCT GATCCAGTGCG          TTTTTCAGCACACCG  67 302
JA116_RS08665 1860858 .. 1860883 +  -8.9  -5.24129   ACCGTATATTACTCA         GCGGCTTTTCG TTTA CGGGCAGCCGC          TTTTTTGTGCACGGC 100 77
        guaB 1863999 .. 1864020 +  -5.1  -4.32579   ACTCAGCTGATCGCG           CGCCG-TATC CGT GAAATCGGCG           TTTATTGTGAACTGT  68 157
JA116_RS08685 1866736 .. 1866761 + -14.1  -5.63504   CAGATAACAGCGTTA         TAACCGGGGAG GTCA CTCTCCGGTTA          TTTTTTTATGACGTT 100 34
JA116_RS08690 NONE
JA116_RS08695 1870387 .. 1870412 +   -12  -2.64091   CAGGAAATAAAAAAA         TCCGGCAATA AATAAG TATTGCCGGA          TAGTATCAGATAATT  83 43
        rlmA NONE
JA116_RS08765 NONE
JA116_RS08770 1887202 .. 1887219 + -12.7  -4.46073   GTTAAACCGTAAAAA             GGCGTGC AACT GCACGCC              TTTGTTATATTCAGC 100 52
        ftnA 1888241 .. 1888276 +   -10   -5.4659   TTATTTATAATATAA    CCACACAATTATCA-TA ATA TACTGATATTTGTGTGG    TTTTTATTTGTGTTA 100 59
        copC NONE
        copD NONE
JA116_RS08795 1890242 .. 1890256 + -11.4  -4.65895   GCAATTTTAGCGCAC               GGCTCG CTA CGAGCC               TTTTTCCCTGGACCG 100 208
JA116_RS08800 NONE
        proQ NONE
         prc 1893822 .. 1893843 + -10.2  -5.93809   ACATAAATAAAAAAA           TCGACAGC ATTTGA GCTGTCGA            TTTTTTTTGTGCCGC 100 59
JA116_RS08815 NONE
JA116_RS08820 1895173 .. 1895200 +  -9.8  -4.42238   CACATCCGTGTGCGC        TCAGGCGCGTCA TCCG TGACGCGCATGC         TTTTCGTTGACCTGC 100 101
JA116_RS08830 NONE
JA116_RS08835 1901268 .. 1901289 +  -5.9  -2.79239   CAGCATTAATTGCCA           G-GCCGGAAA TTA TTTCCGGTAC           TCAGTTTTAATCTGA  53 200
JA116_RS08845 NONE
JA116_RS08850 1903047 .. 1903071 + -11.5  -3.80595   CCTCTCTGATATTTC          TCCGGTGAC CGTCAGT GTCACCGGA          TATTTTCCTGTCTGT  95 49
JA116_RS08855 1903640 .. 1903657 +  -8.4  -5.00616   TGACAGGAACGGAAA             GGTCCG CAAACA CGGACC              TTTTTTGCAGAAGAC 100 47
JA116_RS08865 1904882 .. 1904919 +  -3.3  -3.71924   TTCAGCCCGGCAGCC   AGTTGCTGTGC-GGCGCG CAG CGGGCCTGCACGGTAAAA   TTGTTCACTGATTTG  53 269
JA116_RS08875 NONE
JA116_RS08880 1906921 .. 1906942 +  -2.3  -3.79678   ATCTCATCGATCATC           TCAT-CAACC AGT GGATGCATGA           TTATTCTCCAAAATT  51 176
JA116_RS08890 1908283 .. 1908327 + -11.7  -6.02914   CGAACGACAGTACCG GCCGGTGATAAAT--ACCCTG AACAA CAGGGCGGATTTATCACCGGC TTTTTTTTATCTGAA 100 190
        phoH 1909224 .. 1909248 + -12.8   -2.7439   AACTGATTCACAGCA          GCTGCGGCAG AGAAC CCGCCGCAGC          CTGTTTATCATCAGT  91 35
JA116_RS08920 1914361 .. 1914379 + -14.6  -4.07568   ACAGAGATAAAAAAA             CGGGCACT GAA AGTGCCCG             TTTTGCCGAAAACAG 100 72
JA116_RS08930 1915723 .. 1915740 +  -2.7  -3.85254   TCAGGCAGGTTATAA             GCAAC AGGATTGC GTTGC              TGTTTTGTGATGATG  52 80
JA116_RS08935 1916878 .. 1916889 +  -2.2  -3.64822   TGTATTCATTCTCTC                TGCG GGTT CGTA                 TTTCAATGAAAAAAT  49 138
JA116_RS08940 NONE
JA116_RS08945 1919983 .. 1919993 +  -2.4  -3.31157   TAAAAACAGCGTTAT                 CTGC GGG GCTG                 TTAATGTCCTCGTTA  45 56
JA116_RS08950 1921143 .. 1921174 + -13.8  -4.31835   GGGCATCAATAATAA      CAGGTTCCGGTG ACTGAATC CGCCGGAACCTG       TTTATTATCAGACTT 100 104
JA116_RS09000 1932606 .. 1932617 +  -7.2  -4.81551   CCAGGGAATATTTCC                CCGG GATG CCGG                 TTTTTCATATAAATA  85 184
JA116_RS20320 NONE
JA116_RS20325 1934002 .. 1934036 +  -9.5  -5.07053   GGATTGTAAGTATCC    CAATAAAAATCCACGC AATA GCGTGGA-TTTTATGG     TTTTTTACGATGCTT 100 98
JA116_RS09020 1936468 .. 1936483 +  -7.6   -3.1876   ACGGGTGTCATAAAA              TAACCG GGAA CGGTTA               TTACTCACTGCGGTT  63 42
        hemA NONE
        prfA NONE
        prmC NONE
       sirB1 1943366 .. 1943382 +  -2.9  -2.50113   CCACACATACGAACA              GCAGCAT ATC GTTCTGC              ATTAATAAACTGATA  41 4
        kdsA NONE
JA116_RS09065 1945312 .. 1945324 +  -3.4   -5.1356   ATTCCTGTTTAAATT                TTCC GGCAA GGAA                TTTTTCTTCCTGCGG  77 123
        ghrA NONE
JA116_RS09090 1949801 .. 1949818 + -12.7  -5.36441   ACGTGTTATTCCCGG             CCCGGTC AGAT GACCGGG              TTTTTTGTATCAGGC 100 55
        rimJ 1954162 .. 1954172 +    -4   -4.2008   TATCTGACCAGCACA                 TTCA GCA TGAA                 TTTATTGAAATCTCT  61 94
        murJ 1955725 .. 1955744 +   -15  -5.19879   TTTATTTCATTCTGA            CGGGGCTG ATAA CAGCCCCG             TTTTTGTATTTCCCG 100 47
        uhpC 1957587 .. 1957608 + -10.2  -5.36441   AATATGGTGTACGGA           GCCTGATG ATAAAC CATCAGGC            TTTTTTATATCCGGA 100 50
JA116_RS09130 1959383 .. 1959398 +    -9   -5.0133   GAAGACAATAAAAAA              GGAACC GGAT GGTTCC               TTTTTTGCAGAAATA 100 49
JA116_RS09140 NONE
        cutC 1962829 .. 1962847 + -14.6  -4.34402   CGGTTAAATCAAAAA             CGCCCTCA TAT TGAGGGCG             TTTTGCTGTCAGAAG 100 54
        aspS NONE
        nudB 1969859 .. 1969875 +  -7.9   -3.6682   TCGTCAGTGTGTTCT              TCCGCAG TGA CAGCGGA              TTTAAATGAATGAAC  70 16
JA116_RS09180 1970682 .. 1970712 +   -12   -5.3472   CCGTCACTCACTCCG      CAGA-GGATGCGC TGTTGT GCGCATCCCTCTG       TTTTCTTTATTTTTT 100 44
        ruvC 1971310 .. 1971327 +  -7.7  -5.69473   CGTGATTTTCTGATG             GCTGGAT ATAC GTCCAGC              TTTTTTTATGCTATA 100 58
        ruvA NONE
        ruvB 1973045 .. 1973064 + -12.1  -3.29543   AAATAATTAATAATC            CGGCCGG TTTATT CCGGCCG             TAATTTTTCCTGATA  89 31
JA116_RS09200 1974041 .. 1974068 + -21.4  -3.02511   TGATGATGTCAGACA        CCAAACGCCCGG TTTG CCGGGCGTTTGG         TATTCAGAAAATAAA 100 81
JA116_RS09205 NONE
JA116_RS09210 1975068 .. 1975091 +  -6.7  -5.07275   GTACTACTGCAAAAA          GCCCTGACA GCTCAA TATCAGGGC           TTTTTCTGTATATGA  86 170
        znuA NONE
        mepM 1979107 .. 1979142 +   -14  -4.11216   GATTAATCCTCTCAT    TTCGCCGGACGGGTAT GAAG AAACCCGTCCGGTGCA     TTTTCAGAATGCAGA 100 35
        lpxM 1980228 .. 1980246 +   -11  -3.30619   TATAAACACAAAGAA             TTGCCCTG AGA CGGGGCAA             TTCTCAGGCCTGATT  81 17
JA116_RS09245 1981684 .. 1981702 +  -4.6  -3.64487   TGCATGCGCAACCTT             GTTACG TAGGTGC CGTAAC             TTATTGAAAATATCC  55 288
         zwf 1988705 .. 1988733 + -12.6  -5.29782   ATATTTGCGTAATTA        TGACCATCTTCT GAATA AGAAGGTGGTCA        TTTTTTATAACTGTC 100 82
        mdtJ NONE
        mdtI 1989873 .. 1989898 + -14.9  -5.38047   CTGTCATTATCTGAA         TCCGGAAATAC ATCT GTATTTCCGGA          TTTTTTATGTCAGTA 100 75
JA116_RS09285 NONE
JA116_RS09290 NONE
JA116_RS09295 1993601 .. 1993622 +  -8.7  -2.73364   GATAACGGATCTGAG           GTGTCACGT TCAG GCGTGGCAC            TGGTCTGCTGTTTTT  66 46
JA116_RS09305 1995738 .. 1995756 +  -2.5  -2.65766   ATGTTCAGTCCCTTT            C-ATGACA AATT TGTCATCG             TCCTGTCAGCTTTAA  41 21
        msrP NONE
JA116_RS09315 1997815 .. 1997838 +  -4.4  -3.93963   AACCGAATGTATATT          GCCATCGCGG TATT CCACGGTGCC           TTTCTCGGTCATGAT  60 383
        lsrR NONE
JA116_RS09370 2010517 .. 2010531 +  -6.4  -5.80364   GTTTTGCAATAAAAG               TCACTG TTA CGGTGA               TTTTTTTGTTACCAT 100 51
        tsaB 2011734 .. 2011747 +  -2.4  -3.96148   GTCGTTTCAGTTAAG               TCAG ACATTG CTGA                TTTATCCTGAACAGC  54 482
JA116_RS09420 2027071 .. 2027088 +  -4.1  -2.64616   TTGAACCGGCAATCA             TCAGTCA TAAT TGACGGA              TACTATCCGTCACAG  45 114
JA116_RS09425 2027828 .. 2027849 + -11.5  -2.93734   ACAACTAATAAATTA           AGAGGCGGC ATTT GCCGCCTCG            ATTGTTATCTGGCTT  83 148
        fadD 2029712 .. 2029760 +   -14  -3.84639   CATGACACGGCATCA GACCGCAGAATAACGACGCCGGT ATTT ACCGGCGTCGTTATGAT-CAGTC TTGTTGTGACTATTG 100 36
         rnd 2031010 .. 2031032 + -16.3  -3.35996   ATAGACAGCAAAAAA           CACGGCGGG ATATA CCCGCCGTG           TTATCAGTCACAGTA 100 37
JA116_RS09455 NONE
JA116_RS09460 2034454 .. 2034465 +  -7.2  -2.66435   GCGGATAATGTCGGC                GCGG AAAT CCGC                 TGATGTCATCAGAAT  58 11
JA116_RS09465 NONE
JA116_RS09470 2035623 .. 2035634 +  -3.6  -4.27686   CATATTCTGAATAAG                CCTG AGGG CGGG                 TTTTAACTGCTTTTG  63 8
        hxsD NONE
        hxsB NONE
        hxsC NONE
        hxsA NONE
JA116_RS09495 2039717 .. 2039753 + -16.8  -4.10007   TAAACAGGTAATTTA    TGAAAACCACCGGACT CAACA AATCCGGTGGTTTTCA    TTTTCACGACATTAT 100 139
JA116_RS09525 2044603 .. 2044628 + -18.3  -3.66178   TGAGAAATAAAAAAA         TCCCCGTCCGG ATTT CCGGGCGGGGA          TTTGAGATTGCAGGC 100 38
        norV 2050156 .. 2050169 +  -2.3  -2.60904   TCCTGGCAACGGAGG               CGGCA TGAG TGCAG                GTATTGTGATTATCG  40 18
        norW NONE
        ytfE 2052430 .. 2052451 + -11.7  -4.70319   TTATAAATGAAAAAA           TCAAACACC CGGA GGTGTTTGA            TTTTAATTTTCGTCA 100 459
JA116_RS09570 NONE
JA116_RS09575 NONE
JA116_RS09580 2058241 .. 2058252 +  -5.8  -3.09492   TAACGCATTTGCAGA                CAGC TGAC GCTG                 TGTTAAGGTTCCGCC  53 502
        hrpA 2062838 .. 2062854 + -13.7  -2.93891   AGAGGAGACAAAAAA              GCCGGTC TGT GACCGGC              TCCTGTTTTCACGGT 100 249
        pntA NONE
        pntB 2068823 .. 2068842 + -13.6  -5.28778   GGATAAAATGAAAAA            GGCGGGAA TTAT TTCCCGCC             TTTTTTATGCATAAT 100 45
JA116_RS09625 2072345 .. 2072358 +  -3.9  -4.01603   ACAAATCGTGCTATT               TTAGA TATA TCTAA                TTTGATCTTTCCATA  58 146
JA116_RS09630 NONE
JA116_RS09635 2073838 .. 2073850 +  -4.7  -3.62096   CCGCAGGGGAAGATA                GCCCG TCA CAGGC                TTTGAGCTGATGAAA  55 437
        malI NONE
JA116_RS09655 2078194 .. 2078204 +  -2.4  -3.84271   TCCGGCACTGTTGCT                 CGCG TAA CCCG                 TTGTTCCTGTTATGA  51 118
JA116_RS09660 NONE
JA116_RS09665 2079695 .. 2079707 +  -9.1  -3.30453   ATGCCCTGGAGACAC                CCGGA ACC TCCGG                TTACTGTGGCTTATC  71 83
JA116_RS09670 2081071 .. 2081085 +  -2.8  -2.73619   CTGTTCAAACCTGTT               GTTAAC CAT GCTAAC               GTTTACCCACTGATT  42 96
JA116_RS09675 2081765 .. 2081777 +  -2.6  -2.56475   GAAGGTGTGATCGGG                CTGG TAAAT CCGG                ATTGATCTGCGGTTC  41 8
JA116_RS09680 2082907 .. 2082930 +  -8.8  -5.76633   TCGGTACTGATAAAA          CCACGCGGTG AAAA CATAGCGTGG           TTTTTTTATATCTCA 100 55
JA116_RS09685 2084172 .. 2084193 +  -4.3  -3.02371   TTTTACTGCCATCTG           TCAGCGCTG GAAT CTCCGCTGA            TGCTTATTTACCGGG  47 4
JA116_RS09690 2085521 .. 2085546 +  -2.6  -3.26042   GAGGACGTGTACTAA         TTCATGATAC AAAACA GTAGCATGGA          ATTGTTTTTCACTAC  43 211
JA116_RS09705 NONE
JA116_RS09710 2088911 .. 2088944 + -10.5  -4.13654   AAATAATACAATTCT     GTATATTGTTTTCTC CTCA GAGAAAACGATTTAC      TTTGTGATTTCACCG  91 95
        mgtA NONE
JA116_RS09720 2092798 .. 2092820 +    -2  -3.82117   TTTAGACTTGACGGT           GGATTTGACT TAA AGTTAGGTTC           TGTTTTCTGACTGGG  51 41
JA116_RS09725 2093294 .. 2093308 +  -3.4   -4.0274   TACCGCAGCCTGGTT               CACGCC ACC GGTGCG               TTGTTTAATAATGCA  56 73
JA116_RS09730 2094067 .. 2094092 + -10.6  -4.52047   AAAGGCTCTGAGCCA         TTCCGGTAAA GTGGAG TTTACCGGAA          TTTTATAATCTGATA 100 55
JA116_RS09750 2097809 .. 2097821 +  -3.5  -5.48213   CCAATATCTTTAAAA                TTATT AGC AATAA                TTTTTATTTTAAATG  84 334
JA116_RS09760 2099047 .. 2099059 +  -3.3  -3.39288   GATAATTGTCATACC                CCGGA GTT TACGG                TATTCTTCCCAGATC  47 64
JA116_RS09765 2099394 .. 2099404 +  -8.2  -4.19953   GCTTCCGTCATTTCT                 CCGG AAA CCGG                 TTTTCCGGTTAAATC  79 57
JA116_RS09780 2102972 .. 2102995 +    -6  -4.19817   CTCACCGAACAGCCC          CTGCGGATTA GCAT TAATCTGCTG           TTTTGAATAACTCGC  70 470
JA116_RS09790 2105486 .. 2105499 +  -2.3  -2.64794   TGCATAAACTGAGCC               GCGAC GGAG GTCAC                TGATATGGGATTAAC  40 9
JA116_RS09795 NONE
JA116_RS09800 NONE
JA116_RS09805 NONE
JA116_RS09810 NONE
JA116_RS09815 2110748 .. 2110776 + -20.3  -4.59773   CTTATTGTAGCCTTA        TCCGGCGGCATCG TTC CGGTGCCGCCGGG        TTTTTAACAATGCAG 100 31
JA116_RS09820 2113178 .. 2113192 +  -6.4  -4.56597   CCGGTCATTTATTAC               CGGTGT GAC ATACCG               TTTTTAACCGGCAAC  74 4
JA116_RS09825 NONE
JA116_RS09830 NONE
JA116_RS09835 2115848 .. 2115875 + -12.8  -3.72788   TCCGGCCGTAAAAAA        TAACCCGGC-GCG GTT TGCTGCCGGGTTA        TTGTCTGTTATGCCA 100 30
JA116_RS09860 2120763 .. 2120799 + -15.5  -3.61232   TCGGATAAACAGGAT    TATAGTTGCAAATACAA CGA TTGCATTTGCAACTATA    TATTTATCTGAAACG 100 56
JA116_RS09865 NONE
JA116_RS09870 2121816 .. 2121847 + -13.7  -3.96327   TTAAATAAGCTGACT      GCCTGCGGCGCCGG ATTTA CCGG-GCCGCAGAC      TTTGTACTCAGCGCT 100 33
JA116_RS09885 2124697 .. 2124713 + -12.3   -4.0641   TGACCCGTGAATAAA              TGCGGAG TTT CTCCGCA              TTTATGTCCGTGCGG 100 41
JA116_RS09895 NONE
JA116_RS09900 NONE
JA116_RS09905 NONE
JA116_RS09910 2129944 .. 2129959 +  -2.6  -4.37092   GGGTTTAAGGAAAGT              TAGACT ATTT AGTTTA               TTTTATCGGGCAACT  59 52
JA116_RS09915 NONE
JA116_RS09920 2134170 .. 2134196 +  -3.1  -4.56597   CGACCGGGATGTGAA        GG-AGTGGTATT GAAG AATACCAGTACC         TTTTTGCCGAAAAAC  63 13
JA116_RS09925 NONE
JA116_RS09930 2135070 .. 2135087 + -11.3  -4.62471   TTCTCTGACGTAAAA             GGCCTTC ATCC GAAGGCC              TTTTCTGTATCACTT 100 48
JA116_RS09970 2143511 .. 2143537 +    -5  -5.65177   TCACAATAATACCTG         CTGCGGTGGCAT TCT GTGTCACCGCCC         TTTTTTTATACATCT  91 32
JA116_RS09975 2145253 .. 2145280 + -15.7  -5.50723   TCAGCCATAAGAAAA        GCCCCGTTTCA GAGCCA TGAAACGGGGC         TTTTTGTTTTCGTCA 100 48
JA116_RS09980 2145937 .. 2145948 +  -7.2  -3.28712   GCCGGCAATATCTGC                CGGC TCAG GCCG                 TTGTCAAACCCGCAG  64 48
JA116_RS09990 2147445 .. 2147463 +    -3  -5.13473   AGATGCGGCTCCAGG             GCGGACTT CAG AAGACGGC             TTTTTTCAATGTAAT  77 304
JA116_RS10050 2159010 .. 2159024 +  -6.4   -3.3482   TTCATCCGCCAGGTA               TCCGGA ATA TTCGGA               TTAATTAAACAATTA  56 347
JA116_RS10060 NONE
        metC 2162326 .. 2162343 +    -7  -5.36441   CTGTATACCGGAAAA             CCTGCA TTTTTT TGCAGG              TTTTTTCTGTCCGGA  89 64
JA116_RS10075 2164691 .. 2164714 + -18.2  -2.89921   TAAAATCTGACATTA          CCGTCACCGG AAAA CCGGTGACGG           TATATCCGGATTACT 100 38
JA116_RS20335 NONE
JA116_RS10105 2172423 .. 2172442 +  -5.6   -5.1287   AGAAAAACCCAGTAC            CCGGCGGT AAAA ATCGCAGG             TTTTTTCGATGTCAG  83 299
JA116_RS10120 2175140 .. 2175153 +  -8.1  -2.78463   ATGCCAGGCAAACGT               TGCCG GGCA CGGCA                TATCATAACGACCGT  57 204
JA116_RS10135 NONE
JA116_RS10140 NONE
JA116_RS10145 2181251 .. 2181264 +  -4.5  -3.06261   GGGCATAGCCCCGCT               TCGCG GCGT CGTGA                TATTGCCGGTTCAGC  48 57
JA116_RS10155 2183107 .. 2183123 +  -7.2  -3.44257   AATCCACTTCAACTC              CGGTCC AGGCC GGGCCG              TTATCAATATATTTT  61 428
JA116_RS10170 2185475 .. 2185515 +  -4.7  -2.71712   GGGTGCGTTTGATTA ACCGGC-GC-GGCAGATGGT GTGT GCCG-CTGCCTGCTGCCGGA CTTTCAGCCGCACCG  48 25
JA116_RS10180 NONE
JA116_RS10185 NONE
JA116_RS10190 NONE
JA116_RS10195 2189294 .. 2189336 +  -9.3  -3.91821   ATTTATCTGTTCTGA TGGTTTAACTGTCCGCACCGG AAA CCGGTGCGGACA-T-ACGTCA TTATTACTGTTTTTG  83 26
JA116_RS10215 2193273 .. 2193289 +  -8.7  -2.59039   CAAATCCGCTCTCTG              GCGTCAC TGC GTGATGC              ATTATGAAAATGATT  66 2
JA116_RS10220 NONE
JA116_RS10225 2195002 .. 2195031 + -15.1  -3.29704   CAGCCTGACGATTGC       TCCGCCGCTGT CGTTACAA ACAGCGGCGGA        TGTGTTTACTGCACA 100 33
JA116_RS10240 NONE
JA116_RS10245 2199307 .. 2199330 +  -6.6  -3.91908   ATCAGGCGTGCGCAG          CCTGATCCCG CCGG CGGTACCAGG           TATTTTTCACCATAT  69 21
JA116_RS10255 NONE
JA116_RS10260 NONE
JA116_RS10265 2202069 .. 2202107 +  -6.6  -3.24245   CGCCCCAGAGTACCG   TCCGCCATAACCAGCAGC CAG GATGCGGTTTGTGCCGGA   TTCAGTTGTGAATCA  57 124
JA116_RS10275 NONE
JA116_RS10280 NONE
JA116_RS10285 2204832 .. 2204868 +  -5.2  -2.93348   ATGTTCCGTCCGGCG   CAGC-CCGGAACTTAAG GCAG CTTAAGCTCCGCCGTTG    TCTGCTATTCATCCG  52 11
JA116_RS10290 2206880 .. 2206904 + -12.2  -5.48163   GCCATAATAGACGCA          GGCCGTTACG TTTTT TGTAACGGCC          TTTTTTGATTTATTT 100 45
        prpB NONE
        prpC NONE
JA116_RS10325 2215287 .. 2215306 + -12.2  -4.57514   CGCAGAAAAAACGAA            GCGGATAC TCCG GTATCCGC             TTTCTGTTTTATTCT 100 57
        ydfG 2216704 .. 2216731 +  -8.6  -2.57132   GCCGGTATCCGTATA        ATCAGGTAATTT TATT AAATTACCTGAA         ATTATCACCGAAAAA  63 59
JA116_RS10340 NONE
JA116_RS10345 2217490 .. 2217507 + -11.3  -4.78848   TTTGACCATGAAAAA             GGGCTGA TTTA TCAGCCC              TTTTGTATTTGACCG 100 57
JA116_RS10370 2222968 .. 2222998 + -13.4  -4.46835   ATTATTTTAAACTCT       TCAGCCACCTTTGT TAC ATAAAGGTGGCTGC       TTTATTTCACATTGT 100 243
         tus 2224944 .. 2224962 + -14.6  -3.26545   GAAGTGATGTAAAAA             CGGAGCCA TCA TGGCTCCG             TTCCTGCTATATACA 100 29
        manA 2227763 .. 2227788 +  -9.7  -3.72743   TTCTCTAATTTTCTC         CGGGCAGTCAG TTGG TTAACTGCCCG          TTAATTTTGATACTG  80 46
         add 2230554 .. 2230576 + -12.8  -5.86976   TTCCGTTACAAAAAA           GGCCTGATAT TTT ATGTCAGGCC           TTTTTTATTTTCTGA 100 47
        rsxA NONE
        rsxB 2235516 .. 2235533 +  -8.3  -3.20207   CGCTGACACGCGGAA             CCGGCCG CAGC CTGCCGG              TTCATGCCTCATCTT  67 254
        rsxD NONE
        rsxG NONE
JA116_RS10445 2240325 .. 2240349 +  -6.4   -4.4767   TAACTGTATAATAAA          GCAGGCTCCT TTCCC GGGAGTTTGC          TTTTATCATCAATGA  74 38
         nth NONE
JA116_RS10455 2243220 .. 2243235 +    -6   -5.0538   CGTCTTTCAGCGAAC              CGCCGC AGCC GCAGCG               TTTTTTCAGATCGGC  86 188
        ribA 2247493 .. 2247512 +  -9.2  -4.92812   AGTAAAAACAGAAAA            GCGCGGCA AAAA TACCGCGC             TTTGTTTTCTTATCC 100 54
JA116_RS10510 2255309 .. 2255332 + -15.4  -3.96148   ATAATCTGCAAAGAA          TAACGGCAGC TTTC GCTGCCGTTA           TTTATACTGCGCCGG 100 74
JA116_RS10520 2257677 .. 2257708 +  -4.4  -3.03441   GAAACTGAATGTCGC      GCAGGCGGATATGA TTAT TGATATCCGCATCC       TGTTCCGGCCTGATC  48 340
JA116_RS10545 2263184 .. 2263194 +  -4.6  -3.41569   GTCAGAGGCCGTTAT                 CCGG TGA TCGG                 TATTTGCCTCGGTCA  55 259
       trpCF NONE
        trpB NONE
        trpA 2267986 .. 2268003 + -12.7  -4.81306   TAAGTTTTCACCCGG             CCCGCTG TTAA CAGCGGG              TTATTTTTTGTTGAG 100 38
JA116_RS10575 2268443 .. 2268464 + -13.1  -5.32882   TACCGGATATAAAAA           TGGCGCAAT TATT ATTGCGCCA            TTTTTTATGATGCTG 100 56
JA116_RS10585 NONE
JA116_RS10590 2271207 .. 2271228 + -10.2   -3.3705   CGGATTGGTAAAAAA           TCAGGCCA ATAATA TGGCCTGA            TTATCCGGTGTGTTT  78 14
JA116_RS10600 NONE
        qseC 2273912 .. 2273924 +  -6.9   -3.2794   TTCTATCGCTTTGAT                GCGGC CCT GCTGC                TTACTCTGAATCAGC  59 81
JA116_RS10615 2276372 .. 2276399 +  -5.6   -4.8622   ATAATAAAATCAACC        GGATATCGGT TTGTTTCC GCCGGTATCC         TTTTTCGTTAAACGG  78 37
        yciA 2276883 .. 2276904 + -15.9  -4.52589   TAACACCTTTCATGC           CGGCCACTC TTCT GAGTGGCCG            TTTTGTCTGCCGGGG 100 38
        dbpA 2278432 .. 2278451 +   -15  -4.17556   ACGGTTTTGTATCCG            GCCGGCCT TTTC AGGCCGGC             TTTATTCCACCTGTA 100 78
JA116_RS10630 2279301 .. 2279333 + -13.5  -5.26316   AATAAAGCTGAAACA      AAAACCCCGGCATTT TTC AGGTGCCGGGGTTTC      TTTTTTATCAGATCA 100 36
         cls NONE
JA116_RS10650 2282471 .. 2282501 +  -9.7  -4.36914   ACCGGAGTACGCAGT      CCGCTGGC-GGGAA TAAA TTCCCTGCCGGCCG       TTTTGTCAGCAGCGG  93 10
JA116_RS10695 2293181 .. 2293203 + -15.6  -4.37721   ATTTTCCGGTTATAA           CCCCGTCAGT ACA GCTGACGGGG           TTTGTGTGTTTTGTT 100 48
JA116_RS10700 NONE
JA116_RS10705 NONE
JA116_RS10710 NONE
JA116_RS10715 2296671 .. 2296687 + -15.1  -3.45023   GCTCAGATGTAAAAA              CGGGGCC ATT GGCCCCG              TTCTGATAATAATGA 100 29
        adhE 2300606 .. 2300621 + -10.4  -5.59879   AATAATAACCGCAAA              GCCCTC TCCG GAGGGC               TTTTTTATATTTATC 100 55
JA116_RS10735 2302461 .. 2302477 + -12.3  -5.71712   TACACCTGACAAAAA              GCCCTTC CCT GAAGGGC              TTTTTTTATATCCGC 100 46
JA116_RS10760 2307681 .. 2307704 +  -3.8  -2.62184   AAATACAAAAAATGT          TGTGCCTG ATACCGGA CAGGCACC           TCCTGTAAACAAACA  44 17
        purU NONE
JA116_RS10770 2309110 .. 2309122 +  -7.7  -4.17048   TTGCTTTGCTCATCA                TGCTG CTG CAGCA                TTATTTTCAGCAGCG  76 289
        xthA 2310960 .. 2310979 + -13.6  -3.55622   CCCGCTGATACAAAA            TGTCCCGC CAAT GCGGGACA             TTTCAGGCCGTTGAC 100 33
        sppA 2316805 .. 2316825 + -15.5  -6.28967   TCTTTACTCTCAAAA            GCCTGTTCG TGA CGAACAGGC            TTTTTTTTATTTCTG 100 48
        ansA NONE
        pncA 2318569 .. 2318590 + -11.6  -4.79352   TAGCGATCGTCATGA           CGGGACAG CAAGCA CTGTCCCG            TTTTATTCTCAGTCC 100 38
        gapA 2320740 .. 2320757 + -12.7  -5.86976   TCATGTTCTCTGAAA             TGGCCGC AATT GCGGCCA              TTTTTTATTTTGTAC 100 49
JA116_RS10830 2321667 .. 2321684 + -10.5  -5.20781   CCCGCAGATCCCCGG             GGGCCGC TTTT GCGGCTC              TTTTGTTTTGTGGTA 100 45
JA116_RS10835 2322674 .. 2322686 +  -6.3  -2.62184   ATAGTGCTGAACTTC                CATCA CAG TGATG                TGGTCTCCCGGAACC  54 64
JA116_RS10880 2330968 .. 2331018 +   -23  -3.14522   AGGCACTGGCCCGCT GACAATAAAAAACCGGCGCAGT TTTGTTC ACTGCGCCGGTTTTTTATTGTG TTCAGTCTGCGTTAC 100 24
        nhaB 2333554 .. 2333576 +   -15  -6.04953   TTTACATTGCACTAA           CCGGAATAAC CGT GTTATTCCGG           TTTTTTTATTTCTGT 100 48
        dsbB 2334236 .. 2334266 + -19.9  -2.93382   TCCTGACGCCGTCAA       GAACAGCCGCATC CGTGT GATGCGGCTGTTC       TGTATCAATCTACAA 100 41
JA116_RS10935 2341168 .. 2341180 +  -3.3  -4.48902   TAATAATATTCAGCA                CCGCT GAT ACCGG                TTTATTTCAGTGTAT  63 38
JA116_RS20350 2343738 .. 2343748 +  -4.6   -4.3739   CTTTTCAATCACAGT                 CCGG ATA TCGG                 TTTTATACAGCCATG  66 437
JA116_RS10955 NONE
JA116_RS10960 2345058 .. 2345088 +  -6.7  -2.56601   CAACAGCCCGTCACC       GTCATCCCGGATC ATTCC GTTCCGGGCTGTC       ATCCTTTTTAATCCA  55 57
        ttcA 2346321 .. 2346342 +  -5.9  -3.05844   TACAATTATGGAGCA           CAACGTTCA TCGC TCAACGTTG            TATTCACCTGCGGGA  54 206
         tpx 2349826 .. 2349857 + -15.8   -5.7946   ACCCGTATCTGTAAA      AAACCCCGCTGCCG GTGA CGGCCGCGGGGTTA       TTTTTTTATTGCGGG 100 44
        pspF 2356934 .. 2356953 +  -4.8  -3.17456   TTACTGAAAAAGCAT            GCCGGCAG CCCG CAGCCGGA             TTAAATGCTTTCGTT  51 2
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF NONE
        fabI 2363291 .. 2363313 + -14.2  -3.80133   CTGAAATAAAGCAAT           CAGCCTCTGT ATA GCAGAGGCTG           TGTTTTCTGCACGTC 100 32
        gstA 2365230 .. 2365256 + -13.8  -3.99324   TGATATACAGAGACA         AAAAACGCCGGA TAA TCCGGCGTTTTC         TTTATGCTGATACGG 100 47
JA116_RS11085 2370303 .. 2370322 + -12.2   -5.4833   GGTTTACCGGTAAAA            GGCGAAAC ACCC GTTTCGCC             TTTTTTATTACCTGA 100 48
        gloA 2372165 .. 2372181 +  -8.7  -5.20222   CTCCTTCCGGCAAGC              CGCGCTA GAA TAGTGCG              TTTTGTTTGTTTAAT 100 103
         rnt 2372852 .. 2372890 + -18.4  -2.60079   GCAGACAGTAATCAG   TAAGAAAACGCCACCTCA GAA TGAGGTGGCGTTTTTATA   TCAGTTATCCGGTAA 100 23
        rhtB 2375099 .. 2375120 +   -13  -3.72742   GCCTGAGCAGAAATA           CGTCCCGC CGGTTT GCGGGACG            TTATATTACTACTCA 100 35
JA116_RS11130 2376840 .. 2376854 +  -4.2  -5.92399   ACTCAGCTGTTTATC               GCGC TCAAGCT GCGC               TTTTTTATTTTCTTC 100 434
        sodB 2378426 .. 2378443 + -12.7  -4.53163   CAGTCGATCAAAAAA             GGGCGGA ATTT TCCGCCC              TTTTGTACTGTATGG 100 98
        purR 2379965 .. 2379976 +  -3.6  -3.69482   GCAGCACGGGCTGTC                CGGC AGCG GCTG                 TTCTATCTTCAGTGC  53 140
JA116_RS11165 2382124 .. 2382143 + -13.6  -5.09426   ATATTCCTAATTAAA            GGCCGTAC TCAT GTACGGCC             TTTTTTGCCATTGAA 100 60
         cfa 2383554 .. 2383580 + -10.3  -5.72616   ATCCGTAATAAAAAA        TCCGGT-CTGAT AATT ATCAGCACCGGA         TTTTTTTATCTGAAT 100 61
JA116_RS11180 2385840 .. 2385855 +  -4.6  -4.07568   TTTATCCTGCAACGT              GCCGGT CGTT AACGGC               TTTTGACGGGGGAAA  61 14
JA116_RS11185 NONE
JA116_RS11190 2386281 .. 2386300 +    -5  -3.46146   ATCAATACGGCTGAT            TTCTTGCG TTAA CGCAAAAA             TGTTAATTTATTTCT  55 127
        pykF 2388009 .. 2388027 + -11.7  -5.88565   TCTGAATTAATAAGA             GCACCCG CTGCA CGGGTGC             TTTTTTTATTCTAAA 100 56
JA116_RS11200 2388566 .. 2388592 + -18.2    -5.252   TGCCTGAAGAACAGA         TGGCGTAGCATA AAT TATGCTACGCCA         TTTTTTATGCCAGTC 100 52
        ydiK 2400698 .. 2400730 + -11.6  -4.04141   AAAAGAATAAGTTTT     TA-ATCAAAGGTGCA GAAA TGCACCTTTGATATA      TTTAATTAATTATTC 100 31
        rprA 2401127 .. 2401144 +  -6.9  -4.39386   AATGATAAAAAAAAA             GCCCGAA ACAA TCCGGGC              TTTTAATCATTTAAA  74 113
JA116_RS11265 2404647 .. 2404672 +  -7.6   -3.9279   GGCGGAAACGGTTAA         GTGGATCATC TCTCCC GGTGATCCGC          TTTCTGCAATTGCAT  74 43
JA116_RS11270 2405842 .. 2405871 + -16.7  -3.16683   CCGCTTCCTTTATTG       TAAAACAGGATGC TCCC GCATCCTGTTTTA        TTCATCACCTGAAGT 100 42
JA116_RS11275 NONE
JA116_RS11280 NONE
JA116_RS11285 2408193 .. 2408203 +  -2.4  -3.19212   TTACGTAAAGCGATG                 GAGG CAG CCGC                 TGTATTATGAGTAAT  43 5
JA116_RS11290 NONE
JA116_RS11295 2410011 .. 2410050 + -16.8  -3.14132   GCGCCTTAATGCTCT  TCGCTTTTTGCCGTAATAC GTT GT-TTACGGCAAAAAGTGA  TTGCTGAAAGCAGAC 100 32
JA116_RS11305 2411250 .. 2411283 + -13.2  -5.96894   TAAGAATCTGAAAAG     TATCCCCGTCTGCC ACAAAC GCCGGACGGGGATA      TTTTTTTATTTAAGT 100 38
JA116_RS11415 NONE
JA116_RS11420 NONE
JA116_RS11425 2437492 .. 2437510 +  -3.1  -2.50345   ATCAGCAAAACTGCG             TCAGGAG GCAAA CTCATGA             GTGATTTTCTGACCT  42 7
JA116_RS11430 2438464 .. 2438474 +    -4  -4.05747   TGTATTTCCCTGCGG                 TTAC TGT GTAA                 TTTGTGTGAGATGTC  59 128
JA116_RS11435 2439443 .. 2439468 +  -9.8  -5.05782   TCCGGATAAAAAAAA         TACCCCGTCAG CAATC CTG-CGGGGTA         TTTTTTCAGATAACT 100 49
        hxpB 2440896 .. 2440906 +  -3.2   -4.4648   TTGCTGATAACGTTT                 TGCT GAT GGCA                 TTTTCTGATAACCGT  63 48
JA116_RS11450 NONE
JA116_RS11455 2443301 .. 2443327 + -11.7  -6.02914   TCAGATAACAGAAAA         TCCCGTATTCA GCCAA TGAATGCGGGA         TTTTTTTTATGTACA 100 61
JA116_RS11475 2448455 .. 2448493 +  -7.4    -4.258   ACCGGCTGCCCCGCT   GAGAGTGATCCCCGGG ATAGCTG TCCGGGGGTTATTCGC   TTTCTTCGTCGATAC  75 24
JA116_RS11485 NONE
        dapE 2450714 .. 2450724 +  -6.8  -2.81966   TCAACGGATTATGGA                 GCAG ATC CTGC                 TATGATGACGTTTGA  57 10
JA116_RS11495 2451421 .. 2451446 + -10.3  -4.74013   CGGGGATTTATCCTC         CGGCGCCGGGG GATT CTCCGGCGTCA          TTTTCTCTGTTTCCG 100 43
JA116_RS11550 2463490 .. 2463510 +   -14  -4.10566   TTCTGCCGCTGTCTG            CTGCGCCC ATTGC GGGCGCAG            TTTCTGTAATACTGT 100 42
JA116_RS11585 2470486 .. 2470500 +  -2.8  -3.03338   CATCATATAATGATT               CGGATT ATA AATGCG               TATTACAAAGGTTGT  43 42
JA116_RS11590 2471680 .. 2471715 +    -9  -5.00196   TCCGGATGTAGCGGA    TGTAAAAACACCGGTC ATCA GACCGGTGTTGCTTCA     TTTTCTTCTTTCAGA 100 30
        gcvR 2475810 .. 2475822 +  -2.7  -3.43234   AAGGCACTATTACCC                TGATG AAT CATTA                ATTTTGTGTTGATTA  48 12
         bcp 2476363 .. 2476380 +  -3.4  -6.20267   GTTTTTTCTGAGAAA             CACCAT TTTACC GTGGTG              TTTTTTTATTTTTCA  95 58
JA116_RS11620 2477953 .. 2477982 + -20.1  -2.57013   TGTAACACCAAAAAA       CCCCGATAGCCGG TTGT CCGGTTATCGGGG        TCACTTCACTTCAGA 100 36
JA116_RS11630 NONE
        arsC 2481102 .. 2481122 +  -9.7  -3.52113   GAGCCTGACTTTCCG            TCCCCGG TAACCGC CCGGGGA            TATTTCTCCGCCCGT  78 39
JA116_RS11640 2481805 .. 2481828 +   -11  -4.30995   ACGCTGATCCCTGCC          ATACCGCCGT ATTA ACGGCGGTAA           TTCTTTTATCCGAAA 100 34
JA116_RS11645 NONE
JA116_RS11650 2484409 .. 2484428 +  -9.3  -3.95435   CATACTACAGATAAA            GATGCGC CCTGCC GCGCATC             TTCTGTTTTACAGGG  83 48
JA116_RS11660 2486283 .. 2486314 +  -8.8  -3.03159   GTGTACGCATCTGGC      GGTCGAGGCGTTTTA AGA TAAAGCGCC-CGACA      TCTTCCGGCAGTTCA  62 136
        purM NONE
        purN 2491035 .. 2491064 + -10.8  -4.15864   TTTCCATTCATAAAA       TAAATGCCCCGC TGACAT GCGGGCCATTTA        TTTATACTTATTCTC  93 28
JA116_RS11690 NONE
JA116_RS11695 2493451 .. 2493462 +  -5.8  -4.33674   GGAAAAGCCGATCCC                CGGA TAAT TCCG                 TTTCTGTTATGTGTT  70 468
        speG NONE
        ppk1 NONE
         ppx 2498160 .. 2498170 +  -2.4  -3.43773   CGCGGGGAAGTGCTG                 GTGG AAG CCTC                 TGTTTCCGTGTGGGA  47 395
JA116_RS11725 2501353 .. 2501372 + -13.6   -5.4433   CCGGTAAAACAGCAA            GGGCGGAT CATT ATCCGCCC             TTTTTCTTTCTGTCT 100 46
JA116_RS11735 2502539 .. 2502566 +    -7  -2.51223   ATTTTAAGTATGTCA        GTCAGGGCAG TGCAATAT CTGCCCTGAA         ATCTCTGTTATTCCC  55 34
JA116_RS11745 NONE
JA116_RS11750 2507569 .. 2507583 +   -10  -3.07029   AGCGACAATACAGGA               GCCTCA TCA TGAGGC               TGTTCGCCCTGTTTA  73 14
        mdtC NONE
        baeS NONE
        baeR 2512782 .. 2512812 + -13.4  -4.99861   GTTATCTGACAGGGA       TAAAAAACGGCGGA ATA TCCGCCGTTTATTG       TTTTTCTGATTACTG 100 46
        yegQ 2515320 .. 2515347 + -14.3  -5.35224   AGGAACCACCTCCTT        GGTTGGCTCAA TCTCCC TTGAGCCAACC         TTTTCTTTTTGTGCC 100 142
        yegS NONE
        fbaB 2517592 .. 2517606 + -11.4  -4.41241   TTTGCCCGTTGTCCG               CGGAGC CGG GCTCCG               TTTTATCAGCGTTTC 100 160
        pagP 2520870 .. 2520926 + -32.9  -2.92144   CGCTGGCAGTTTTAA GTCTTTCAGACAATAAAAAACCGGGGA TTT TCCCCGGTTTTTTATTGTCTGAAAGAA TGATTATGCTTTCGC 100 26
JA116_RS11820 2523309 .. 2523326 +  -4.8  -3.53012   CTGCCGCAGTACAAT             CAGTGG TGCATT CCGCTG              TTTCAGGAGCCAGCA  55 128
        yidA NONE
        brnQ 2525636 .. 2525655 + -11.4  -6.00814   CGCATGATGTAAAAA            GCCCGGTT CGCT GACCGGGC             TTTTTTTTCGTTATT 100 34
JA116_RS11845 2528111 .. 2528128 + -11.3  -3.29581   ACGCACGATAAAAAA             TACCCGC CGCG GCGGGTA              TTCAATTATGTATTT  86 30
JA116_RS20365 2531740 .. 2531752 +  -4.1  -3.81557   AGAGAACTGCCGTAC                TGCTG CCA CAGTA                TATTTATTTCAGGCG  56 93
        satP 2533715 .. 2533731 + -12.3  -5.60689   TCTTATATAAAAAAA              CCCGTTC AGT GAACGGG              TTTTTTGTTGTCTGC 100 49
JA116_RS11885 2536058 .. 2536082 + -15.7  -5.71712   GATAACATGACAAAA          CCGCTGCCGTC AGT GACCGCAGCGG          TTTTTTTATATGAAC 100 47
JA116_RS20370 NONE
JA116_RS20375 NONE
JA116_RS11925 2545621 .. 2545640 + -12.8  -4.96848   TATGGCATAAAAAAA            CCGGGCTG ACTG CGGCCCGG             TTTTTCTGTCAGAAC 100 31
JA116_RS12000 2564140 .. 2564159 + -13.6  -5.30616   CGTTTCTGCTGTCAG            CGGCTTCC CCCG GGAAGCCG             TTTTTATTTACATCC 100 42
        yfbR NONE
JA116_RS12010 2565646 .. 2565658 +  -4.7  -3.71873   CTCGGCCAGTGAATT                GAGCG GTA CGCAC                TTTCCATATCGATAC  58 450
JA116_RS12035 2570596 .. 2570617 + -17.3  -4.64861   GCATAATCTTTGCTC           TCCGCCGGC CATT GCCGGCGGA            TTTATTTTGAACACC 100 35
         pta 2572838 .. 2572862 + -17.1  -5.58454   AGCCACAGACAATAA          TCCCGGCCGGG TTT CCCCGCCGGGA          TTTTTTTACTGTACA 100 57
JA116_RS12055 2577200 .. 2577214 +  -8.6  -3.15544   GCGGGATTTACTGGA               TAGTCC GGC GGACTA               TTAATGCAGATCCCG  67 7
JA116_RS12115 2589200 .. 2589211 +  -4.4   -5.1471   ATCTTTTTGCTCTTA                TCCA TATT TGGA                 TTTCTTTTTTATCCT  78 411
        mnmC 2593478 .. 2593508 +  -4.7  -3.14284   ATTATTGATAATTTT       TCCGGCGGTAA CGCAAACTA TCATCGCCGGA       CTTTATTGATCACGG  51 78
        glsA 2595058 .. 2595076 +    -6  -4.78752   CTTGGTGTAAATAGT             CACAGC CTGTTGT GCTGTG             TTTTTCGGTTGTAAT  81 346
        smrB 2600622 .. 2600646 +  -6.4  -2.68806   CAATCTGTCCGGGAC          CGCGGTGC CAGAGCAGT GTACCGCG          TCCGTTATTATCCAG  54 46
        fadL 2606967 .. 2606987 + -14.1  -6.18768   GCATACATAAAAAAA            GTTCTGGTC AGT GACCAGAAC            TTTTTTTTATCTTTT 100 53
        proC 2608779 .. 2608809 + -11.8  -3.08371   AATAATCACCGGATA       CCGGAACCGGCATT TAT AGCACCGGTTCCGG       TCTGTTCAGACTATC  86 36
        dsdC 2612885 .. 2612897 +  -5.5  -3.25652   TCCGGCTATACAGCC                GGGCA TCA TGTCC                TCTTAGTTAAATGGA  55 214
JA116_RS12230 2613177 .. 2613193 +  -4.3  -4.75288   AATCATACCGATTAT              CAGCTGG TAG CGGGCTG              TTTCTTTTCATCTCA  71 234
JA116_RS12235 2614029 .. 2614041 +  -6.3  -3.56972   GCCTGCTTATCGTGA                TTGCA GCC TGCAA                TTGATTTCATGGCAT  60 190
JA116_RS12270 2616971 .. 2616981 +    -4  -5.19251   ATCAAGCCTGAATAA                 TACT AAT AGTA                 TTTTTATTAGTATTG  78 117
JA116_RS12275 2617379 .. 2617395 +    -5   -3.9398   ACAGTGACAGATAAA              CGCCGG GGCCA CCAGCG              TTTATCACATTATCC  61 48
        nlpA 2618919 .. 2618943 + -15.7  -3.93963   TGACAGCAAACTTAA          GCGTGCCGGAC ACC GTCCGGCACGA          TTTCTCACTCCTGAT 100 41
JA116_RS12300 NONE
JA116_RS12305 2621852 .. 2621873 +  -3.1  -3.31625   AAAACTGAATGCGGA           CAAATAATA AATT TATTTTTTG            TTGATGATTCGTTTA  47 19
JA116_RS12310 2622374 .. 2622402 + -14.7  -2.97602   CCATACCGGGCCGTA        AAAAACCTCCCGT CAT ACGGGAGGTTTTC        CTTTCGTCTTAATTA 100 77
JA116_RS12390 NONE
JA116_RS12395 2636803 .. 2636820 +  -2.1  -3.93988   ACCATATGTTAATAC             TGAAATA ATAT TATTTTA              ATTTTTTTGATGTGC  53 98
JA116_RS12400 2637288 .. 2637317 + -13.1   -3.6216   CTGCGCGGACAAAAA       TTATAACC-CCCGT GAA ACGGGCGGTTATAA       TTCTGCTTATTGATC 100 107
JA116_RS12420 2640176 .. 2640187 +  -5.8  -2.70932   CTTTTCTGTTAATTA                TCCG CCGC CGGA                 TAATTGACAGGAAAA  52 119
JA116_RS12425 2640722 .. 2640747 +  -9.9  -3.87373   GGCTGATAACACAAA         GCAGGA-AAAAC CAC GTTTTATCCTGC         TTTGTCAGCAATCTC  84 213
JA116_RS12445 NONE
JA116_RS12450 2645822 .. 2645841 + -12.2  -3.62723   CTGAACAATAAAAAA            CGGGAACT AATA AGTTCCCG             TTAATTATTTCACTG  93 286
JA116_RS12465 2647813 .. 2647840 + -12.7   -3.4758   ATATAAATATCCCCC        CCCGCGCTGGT TCTTCC ACCAGCGCGGC         TTCGTCTTATTCCTC 100 201
JA116_RS12620 2671815 .. 2671831 +  -4.3  -2.89602   GCATGAAGGGTTATT              TCGCTGA CAC TCTGCGG              CTTTCCTCTGAAAAA  47 400
JA116_RS12630 2673346 .. 2673357 +  -4.4  -5.74122   TGGACATGGTGGATT                TGGA CTTA TCCA                 TTTTTTTCTATGGTA  90 74
JA116_RS12685 2680649 .. 2680681 +  -4.4  -3.01001   GAATATAACACCGGA     TC-ATATAACTGTAT AAAT ATACAGCTATATAGA      TATACTTTAAACATC  47 130
JA116_RS12690 2681091 .. 2681106 +  -6.8  -2.92091   CTTTAACAGTACAAC              CGCAGT AACG GCTGCG               TATCTGAATAACTGT  58 18
JA116_RS20395 2681715 .. 2681735 +  -2.5  -3.60094   AACTTGGCGCTATCT            TTATCGCCG CTA CGGGAATAA            TTATCATTATATATG  50 190
JA116_RS12700 NONE
JA116_RS12705 NONE
JA116_RS12710 2684223 .. 2684239 +  -7.9  -2.92792   GGAACATAAGCCAAT              CCCAGGC CCA GCCTGGC              TGCTTTGGCCTCCAT  58 303
JA116_RS12720 2686262 .. 2686282 + -10.4  -4.30844   GATAACGACCTGAAA            CTGCCTGC TGATT GCAGGCGG            TTTTAATCGTCCGCT 100 36
JA116_RS12725 2687793 .. 2687812 + -12.2  -3.62723   CTGAACAGTAAAAAA            CGGGAACT AATA AGTTCCCG             TTAATTATTTCACTG  93 232
        rluE NONE
JA116_RS12740 2690446 .. 2690474 +  -3.7  -3.46885   ACCTGAGTGATGCGC        CGCTGTACGTATC ATG GTAAAGTACGGCG        CTTGTTTTTTTCCCC  51 138
        mnmA NONE
        hflD NONE
        purB 2693700 .. 2693720 + -11.2  -5.71983   ATAATCAATAACACG            GAGGCAGA GAATA TCTGCCTC            TTTTTTTATGATTAA 100 55
        phoP 2694528 .. 2694542 +  -2.1  -3.04144   AAGTAACAGACGCCA               CTTCA ACCAC TGAGG               TATTGCGCATGACCA  42 35
        phoQ NONE
JA116_RS12770 2697290 .. 2697311 + -12.3  -6.07627   CCGTTCAGATAAAAA           TGCCACGTG ATAT CACGTGGCG            TTTTTTTTTACAGAT 100 62
         mfd 2711432 .. 2711445 +  -3.7  -3.53012   CAACATCCGCACTAT               CAGGC AGGT GCCGG                TTTCGGCCGGCACCA  51 45
JA116_RS12825 2712765 .. 2712789 + -11.6  -5.61277   AATAAAATTGACTGA          TACCGGTTTA CTGAA TAAACCGGTA          TTTTCTTTTTTTGTG 100 56
JA116_RS12930 NONE
JA116_RS12935 2730617 .. 2730633 + -10.8  -4.06419   CAATATAAGAAAAAA              CCCGCG TTCGT CGCGGG              TTCTTTATAACGGGG  90 64
        sbcB 2737752 .. 2737762 +  -6.8  -4.80396   TGACCTGAACCGCTT                 TGCC GAA GGCA                 TTTTTGAGTCTTTTA  85 331
         nfo 2753439 .. 2753451 +  -9.1  -3.53012   GGTTGGGTTTCACCA                GCCAC GGC GTGGC                TTTCAGGCCGGCCAC  71 424
JA116_RS13025 2754656 .. 2754681 + -12.5  -2.78696   AAATAATCTGTTATC         TGCCGTACCGG ATAT CCGGCGCGGCA          ATTGCTTATTTATCA  89 35
         mtr 2756065 .. 2756097 + -15.7  -3.13906   GATTTAATCCTGACA     GCACACCCGCCGCA TTTCTC TGCG-CGGGTGTGC      TAATTTTGGCTTGCA 100 39
        yeiP 2756805 .. 2756816 +  -7.2  -4.50976   AAAAACTGCCTGTTA                CCGG GTTA CCGG                 TTTTCTGCTCTCAGC  78 55
JA116_RS13050 2758994 .. 2759009 +  -2.5  -4.62069   TTCATTGATATTAAA              CGTGC CGTTCC GTACG               TTTTTAGAATAAACA  64 230
        mepS 2759712 .. 2759729 +  -9.9  -5.76633   ATTTAAAAAGAAAAA             GCTTCCT TTTC AGGAAGC              TTTTTTTATATCTGC 100 66
JA116_RS13075 2764665 .. 2764694 +  -4.9  -6.21477   CGGAGCCAAATACCG       ACTTTGCTGCTGG GTCG CCTGTAGCAGAGA        TTTTTTTTTACTCTT 100 138
        rplY 2765044 .. 2765073 + -18.1  -4.02334   AATCGGGACGCCGAG       TAAATAACGCCGC TTTT GCGGCGTTATTTA        TTTCTGCTCTAACTA 100 62
JA116_RS13090 NONE
        yejM 2768373 .. 2768384 +  -4.4  -3.56704   AAAAAAGCACAACCG                GACA GCTC TGTC                 TTGCTTTAATCAAAG  52 51
JA116_RS13100 2768517 .. 2768534 +    -7  -5.96219   CTTTATATAAGAAAA             CCAACC GCTTAG GGTTGG              TTTTTTTTGTGCCTG 100 43
JA116_RS13105 2769410 .. 2769430 +    -4  -2.82602   TCATGTGCTTAATGT            CTCTGTAA ATGAG TTACTGAG            TGATTACCTTTCCTC  46 299
JA116_RS13120 NONE
JA116_RS13125 2771312 .. 2771350 +   -14   -3.9344   CCTTGTCTTCATCAG   TTGCCATGTTGAGGCGTA TTT TACGTTCCAGCATGGCAA   TTTCCTGTTCAGCTT 100 119
JA116_RS13260 2793994 .. 2794008 +  -2.8  -3.66018   CTGGCTTGCCTTCCC               GATAGA TAA TCTTTC               TTGTTGCAGTGCTCA  51 231
JA116_RS13390 2807929 .. 2807942 +  -8.1  -5.46629   CATAAACACACAAAA               CCAGC CCAT GCTGG                TTTTTTTACGCTCTT 100 36
JA116_RS13395 2808238 .. 2808253 +  -6.8  -2.92091   CTTTAACAGTACAAC              CGCAGT AACG GCTGCG               TATCTGAATAACTGT  58 18
JA116_RS13400 2808807 .. 2808834 +  -2.9  -2.63476   ACGGCAGTATCGACG        GGAAATTAA AAGCCATTAA TTAATTTCC         AATTTTTAAATAAAT  41 3
JA116_RS13405 2809731 .. 2809750 +  -7.1   -5.0916   AGCATAATTATTTTA            TGCCGCT TTAACC GGCGGCA             TTTTTATATTCCAAC  90 34
JA116_RS13410 NONE
JA116_RS13415 NONE
JA116_RS13420 NONE
JA116_RS13425 2812112 .. 2812126 +  -2.1  -3.65522   GGAATGAAACGCAGA               TCTGG GCGAG TCAGA               TTCTTGAGCTGACTG  49 385
JA116_RS13435 NONE
JA116_RS20410 NONE
JA116_RS13440 2814165 .. 2814182 +  -7.7  -5.65177   ATTTATATAAGAAAA             CCAACCG CTTA TGGTTGG              TTTTTTTGTACCTGT 100 224
JA116_RS13445 2815176 .. 2815194 + -11.7  -5.90981   TGCATTAATTTATTT             GCCCGGT TGATT ACCGGGC             TTTTTTTTCCTCTGA 100 217
JA116_RS13460 2817331 .. 2817347 +    -3  -4.99645   CTGACAATATTTTCC             TGTCAGG ATTC CCTG-CA              TTTTATTTATCGCCT  74 135
JA116_RS13475 NONE
JA116_RS13480 2819772 .. 2819787 +  -3.4  -4.58395   ATAAAACACTCCCAA              TAAATA TTAT TATTTA               TTTTTAAAAAATCCC  65 37
JA116_RS13485 NONE
JA116_RS13490 NONE
JA116_RS13495 NONE
JA116_RS13500 NONE
JA116_RS13505 2822368 .. 2822385 +  -2.6  -4.36554   CTTTTTCTTCATCCA             GTGCCG GATTGG CGGCAA              TTTGTTCTGCTGATG  60 110
        rcnR 2824981 .. 2824999 +    -3  -5.08601   ATCCCTGTATATCTC             AGAGACTC ACT GAGTCCCC             TTTTTATTCACCTCC  75 122
JA116_RS13530 2825537 .. 2825556 +  -3.4  -2.82482   TACTGCCGTGATCGG            AAGGCGCT GTAC AGCGCCGG             ATTTGCATGATATTG  43 30
        ydeE 2826858 .. 2826870 +  -4.1  -3.38522   GATACGGTAATTTTC                TGGCA CTG TGCTA                TCTTTCACCTGAATG  51 84
JA116_RS13540 2827953 .. 2827982 +   -10  -2.57211   TCTGATCTTTGATCC       GGCACAGTGCGT CCCGGT GCGTGCTGTGCC        ATTGTGAAAGGCCAT  71 36
JA116_RS13545 NONE
JA116_RS13550 2830442 .. 2830468 +    -2  -4.78477   GCCCGTTATCAGCCG         CCCCGGTTCCGC AAA GAAGCACCGGTG         TTATTTTTTATCTGT  66 176
JA116_RS20425 2842271 .. 2842296 + -11.2  -2.72511   GTACAGTAAGCTGCC         GCCCCTGC-CT GTCTG AGTGCAGGGGC         ATTTCCGGCAGTACA  76 32
JA116_RS20430 2849681 .. 2849697 +  -2.4  -3.76224   AAAGAAAAACGCTGA              TAAAAA AAGCA TTTTTA              TTTGGTGACTCACAC  51 1
JA116_RS20435 2850409 .. 2850435 + -18.2  -4.27519   AAGTAATTCAAACCA         GCAATGAAGGGT TAT ACCCTTCATTGC         TTTATATTATCAGCT 100 35
        fabG 2860428 .. 2860449 + -13.1  -3.35934   AAAAACCATGCAGGT           GAGGATACC GCCC GGTATCCTC            TTATCCGATCTGTGC 100 55
JA116_RS13725 NONE
JA116_RS13730 2865813 .. 2865834 +  -2.1  -3.14931   CAAAGGTGCTCATCA           GTGTGCCCG TCAC CGGAAGCAC            TTCCTGCCAGGTACG  43 236
JA116_RS13745 2867143 .. 2867172 + -15.1  -3.48395   TCAGAAAAACTGAGT       GATTCCGGTGGTG CGCT CACCACCGGAATA        TTATATCAGCAGAAT 100 28
        gltX 2870874 .. 2870893 + -13.6   -5.1675   TTATCTGCTGCTCAA            TACCCGGC CTGT GCCGGGTA             TTTTTTCATCGGTCG 100 44
JA116_RS13790 2871084 .. 2871094 +  -2.4  -4.09243   GTGACTGATAATATC                 GCGG CAC CCGG                 TTTTCCGGGGCTATA  55 49
JA116_RS13795 2871185 .. 2871203 +   -16   -5.7827   TCCACCAAATTCAAA             CCCCGGTC TCT GACCGGGG             TTTTTTGTTTCTGTT 100 34
JA116_RS13805 2872762 .. 2872781 + -12.2  -4.83593   CTGATGTGACTGAAA            CGGTCTTC CGCG GAAGACCG             TTTTTCATCATTGTT 100 264
        cysZ 2876890 .. 2876920 +    -9   -4.6644   TCTGCCATCCCTTTC      CGTGCAGGGCGGT TATCGC GCCGCTCTGC-CG       TTTTTCCCGTCTCTT 100 41
        cysK 2878064 .. 2878080 +  -9.4  -5.60993   TGCCTGACCTCGAAA              GCACCC GTAAA GGGTGC              TTTTTTTGTGCAACG 100 68
        ptsH 2878582 .. 2878608 +  -8.8  -2.80821   CCTCACCTGTCAGGA        TCCCCGGCTAT TGCTGC AT-GCCGGGGA         TAGTCTGTTTCCGGG  67 52
        ptsI NONE
         crr 2880995 .. 2881012 +  -7.7  -5.79526   CTGTACACTGAAAAA             CGGTTTC TGCG GAAGCCG              TTTTTTTTCGCCTGT 100 59
JA116_RS13850 2881607 .. 2881639 + -11.4  -2.53625   CTAGTCACCACATCA      CACAATTAAGCCCC GTTAA GGGGTTTATTTGTG      AATTTTGATCGTTTT  79 37
        uspF 2882181 .. 2882206 + -11.9  -5.95539   ACGGCAGTGCCTGAC         TGAACGCCCGT TTTA ACGGGCGTTTG          TTTTTTTATTTCCCG 100 44
JA116_RS13880 2886544 .. 2886567 + -15.4  -3.75332   GGGCAGATAAAAAAA          GCGGGGTATA AAAA TATACCCCGC           TTTGACTTAGCAGAT 100 31
JA116_RS13910 2891912 .. 2891930 +  -3.8  -4.18018   CGATGACCACCCCGC             CGGATACA CAC TGAATCTG             TTTTCACTGACAGGA  60 12
JA116_RS13915 2893119 .. 2893139 + -11.1  -3.15999   GCCTGACACTCAAAA            GCCCCGC AATTTCA GCGGGGC            TTCGGTATATAGCCC  79 35
JA116_RS13935 2897142 .. 2897164 + -12.8  -5.08178   TTATCTGATGACAGC           GGCCTCATTA TTT TAATGGGGCC           TTTTTGTCTCTGTAT 100 41
JA116_RS13940 2898541 .. 2898568 + -13.5  -2.57881   ATAAAAGGTGACAGA        CGGCCGGATGCA GATAA TGC-TCCGGCCG        CTTGTGCAGCGGTTC  93 37
JA116_RS13945 2900176 .. 2900187 +  -2.2   -3.9122   CCCGTTATCATGAAC                CTGA CATT TCGG                 TTGTTTCAGAAAATC  53 187
        deoD 2902359 .. 2902373 +  -8.5  -3.86346   ACCGGAAAAGAAAAA               GCGCC TTTAC GGCGC               TTTATCCGGGGATGA  75 59
JA116_RS13965 2903735 .. 2903754 + -13.6  -5.24799   CCGCAGAAACAAAAA            CACCGCGT ACTG ACGCGGTG             TTTTTCTATTTATAA 100 49
JA116_RS13990 2910626 .. 2910643 + -11.3  -2.64155   ATCAACGGCCTGAGA             GGCTCAC CACT GTGAGCC              TCCGTTTAAAACACA  80 54
        ebgR 2916296 .. 2916317 + -13.7  -5.30616   TCCGTAAGATTCTGA           CGGCAGCCT TTCC GGGCTGCCG            TTTTTCTTTCAGTAA 100 48
        ebgA NONE
JA116_RS14025 NONE
JA116_RS14030 2921638 .. 2921653 + -10.4  -4.84529   TTAAGATACAGAAAA              GCCACC TGAC GGTGGC               TTTTTGCATTTATGA 100 47
        ghrB 2924898 .. 2924928 + -13.5   -3.5511   TTTCCTGTCTGAACA       CAGCAGATTATCT TTAGC GGATAATCTGCTG       TCTTTATAAGTCCCG 100 42
JA116_RS14050 2925491 .. 2925502 +  -3.6  -3.44284   AAAAGACGGATATAC                CCGG AGAG TCGG                 TATTGTTCGTCAGAA  51 40
JA116_RS14065 2928365 .. 2928390 + -13.3  -3.94188   CGTTTATCTGCCGGT         TCTGCCCCGCA ATAC TGCGGGGCATA          TTATTTCAGCTGCGT 100 44
JA116_RS14080 2930089 .. 2930113 + -14.4  -3.52192   AACTTCTCCCAGTCA          GATAACGCCC TTCCC GGGCGTTATC          TTATGTCACCTTCCC 100 39
JA116_RS14085 2930801 .. 2930820 +  -3.6   -5.2853   ATGTTGCTCTCCGTA            AACTGTAT AGAT ATACAGTA             TTTTATTTTTAAATA  80 369
JA116_RS14095 2931632 .. 2931652 +  -7.5  -2.96695   ATAATCCGAATAATT            TCTGCCGCT CAA AACGGCGGA            TAATTTCATCGGCCA  58 406
JA116_RS14155 NONE
JA116_RS14160 NONE
JA116_RS14165 NONE
        sctR 2944093 .. 2944120 +  -2.1  -4.36914   CCTGTTATTCAGTTA        TCAGTT-CTGAT GATGG ATCAGCAACTGC        TTTTCTGCACCGGAC  58 16
        sctS 2944368 .. 2944381 +  -2.4   -3.4948   GTAATGTTATTAACC               GGAT TAATTT ATCC                CTTTTTGATCTCCTT  47 37
        sctT NONE
JA116_RS14185 2946245 .. 2946264 +  -5.8  -2.54919   AACGATAAATTAAAA            CGTTAAAT CTAC ATTTAGCG             GTATTATGCATACAT  52 39
JA116_RS14190 NONE
JA116_RS14195 NONE
JA116_RS14200 NONE
        sctC 2949817 .. 2949844 +  -2.8   -2.9356   TCATCATCATAAACA        CAGTTTTTAATA CGGA TATTAATACCTG         TCTATGACTATCACT  43 29
JA116_RS14210 NONE
        sctF NONE
JA116_RS14220 NONE
JA116_RS14225 NONE
        sctI NONE
JA116_RS14235 NONE
JA116_RS14240 NONE
JA116_RS14245 2954548 .. 2954568 +  -2.3  -3.89881   CACGATATTAAAAAT            GACCGCGCC TTT GGCCGGGAC            TTTATCCAGATTGGT  54 97
JA116_RS14255 2955646 .. 2955662 + -10.8  -2.65298   TAAAATAACCAGTCA              GGGCGG TCACC CCGCCC              GTTCTGCTGCCTGAA  76 33
JA116_RS14265 NONE
JA116_RS14270 2957602 .. 2957623 +  -2.3  -5.42131   GGCCATAATTTTTCA           TATTTCGTT GTTC AGCGAAGTG            TTTTTTCTGTGCTTC  78 33
JA116_RS14275 NONE
JA116_RS14280 2959089 .. 2959107 +  -4.6  -4.33417   ATTCTATGAATCTGA             GTGCATTT GTC AAATGCAA             TTTATTCTCAATACC  66 422
JA116_RS14290 2960205 .. 2960225 + -14.1  -3.31144   ATCTGAGAAATGGTA            CCGGATTGT GAA ACAATCCGG            TTATAAAACTGAAAA  95 93
JA116_RS14310 2963997 .. 2964012 +  -3.2   -3.3353   TTTCTCCGTCACAAT              CCGG CCAGTATA CCGG               TATATTTATACGAAG  47 406
        fldB 2979822 .. 2979837 +  -5.4  -4.07568   GACAGCATCCGCTGT              CC-GGCT GAA AGCCCGG              TTTTCCCCGGGCCCG  63 484
        ygfZ 2981486 .. 2981528 + -24.9  -3.61239   AGCCTGATTTCCCGT CACCGCCGGGCGCAGCGAC TCCCT GTCTCTGCGCCCGGCGGTA TTCTGTATGAGTCTG 100 34
JA116_RS14415 2982165 .. 2982200 + -19.2  -4.13654   CTGGCTGCGCTGATA    AAAAAGGCCGGTTGTG ATAA CACAACCGGCCTTTTC     TTTATCGTTTACCAG 100 28
        zapA 2992005 .. 2992017 +  -2.7  -3.53343   CAATCTCAGCCCGAT                TTCAT ACA ATGAG                TTTAAGAACAACGTT  48 91
        ssrS 2992223 .. 2992234 +  -4.4  -4.16814   TGCGACGGCATCTTG                GAGA CCTC TCTC                 TTATTTATCTCCTGA  61 18
JA116_RS14465 2993264 .. 2993276 +  -4.1   -2.7094   TTTCGTGAATATGCA                GCAGA CGG TTTGC                ATTCTGTCCGTGCAC  43 416
JA116_RS14480 2996394 .. 2996423 +  -7.7  -3.30441   AGCATCATTTTACCG       CGCGCCATCACCG GGAC CGGCTGTGGTGCG        TTATAACCGATGCTG  62 140
        ppdD NONE
        tadA NONE
JA116_RS14550 3014686 .. 3014702 +  -2.2   -3.9693   AGAAATTAATTTCAT              CAGGTA CAATT TACCCG              TTGTTTCGATCAATA  53 124
        coaE 3015735 .. 3015749 +  -3.4  -4.35116   GCGGCTGAGTATTCC               CGGCGG TTG CTGCGG               TTTTGATCTGCCCTA  61 415
        yacG 3016787 .. 3016817 + -11.9  -4.93296   TCCGTTTTATTTACA       GAAGAAAGGCGGG ATTCC CCCGCCTTTTTGC       TTTTTATGCTAATCG 100 497
JA116_RS14585 3020833 .. 3020858 +  -6.2  -3.45386   AGTACGGTTGACGGT         GCACGGAATGC AACCG GCAT-CTGTGC         TTCGTTCTCGAATGT  61 125
        leuA NONE
        leuB NONE
        leuC NONE
        leuD 3051433 .. 3051461 +  -8.9  -4.64657   TTCCACCATTGAACC        CCTGCCATCAC CCCTTTT GTGATGGCAGC        TTTTTCCCCGTTTCC 100 54
        sgrR 3053458 .. 3053478 +    -4  -3.05816   GTTTTTAACAGACCA            CGGTTG ATAAAATCA CAACCG            TTAAATAAACCCTGA  47 147
        mutH 3054575 .. 3054589 +  -3.5  -4.17491   CTTAAACGCTATTTC               CGGTG CTGAT CACTG               TTTTGGGAGTTTGCT  60 17
         agp 3055945 .. 3055966 +  -6.5  -5.42975   TATGTTCATATTCAT           GCTCGGC TTACCGTT GCCGGGC            TTTTTATTTATATCC  91 47
JA116_RS14730 3057108 .. 3057122 +  -9.2   -5.1675   TCTGACGTACAAAAA               CCCGCT CCC GGCGGG               TTTTTTAATACCTGC 100 46
JA116_RS14740 3058937 .. 3058983 + -24.7  -4.37658   GTGTAATCATCACTG AAAAACCCGCCGCAGCC-CTGA TTAT TCAGCGGCTGCGGCGGGTTTTC TTTTATCAGACGGTT 100 35
JA116_RS14755 3061709 .. 3061736 +    -8  -3.60792   CATATTGATACGTAA        TTCT-TTATTCAG TTG CTGAATAACAGAA        TTTACCCCTTCCGCC  66 145
JA116_RS14770 3064580 .. 3064608 + -13.3  -2.88645   ATTTGCCTCACAAAA        TGAGGCGAATAGC ATG GTTATTTGCCTCA        TCCTCTTATTATCCT  93 66
        metK 3072828 .. 3072843 + -10.4    -5.626   AACAGACATACAAAA              CCGGCT GAAA AGCCGG               TTTTTTTGTACACTG 100 52
JA116_RS14820 NONE
JA116_RS14850 NONE
JA116_RS14855 3082945 .. 3082955 +  -5.4  -4.11692   CCTTCTTCGCACAAG                 CTTC CGT GAAG                 TTTTAAAGGTCACTG  65 9
JA116_RS14860 3084164 .. 3084193 + -14.5  -4.35646   TGAGCACAGTGTGAA       TAATAACGGGTAG TTTC CTGCCCGTTATTA        TTTCTGTTTAAATCT 100 55
        clcA 3087538 .. 3087554 +  -3.6  -3.29471   TAATGTCATAATCAT              CCTGCA ATGCA TGCTGG              TTGATATCATAGACC  49 352
        mtnK NONE
        mtnA NONE
JA116_RS14930 3100155 .. 3100169 +  -7.8    -5.252   TCCGGCGGCAGAAAA               CGGTGC AAT GCATCG               TTTTTTGTCACCCTA 100 46
JA116_RS14935 3100648 .. 3100661 +  -9.5   -4.7153   TTTCATGTAAAAAAA               CCGCC GGAC GGCGG                TTTTTGCACTTATTT 100 57
        rbbA NONE
JA116_RS14970 3112257 .. 3112276 +  -5.6   -3.3514   CCCGGCCAATTCCGA            TGCCTACG GCGG CGGGGGCA             TTATAGGCTGTCAGT  57 41
JA116_RS14975 3112898 .. 3112931 + -12.5  -3.35679   GCGGCAAGGGAAGAA     TTCCGGGGAACATAC ATCA GTATGTGACCCGGAA      TTCTGAGTGCAGCCA  95 276
JA116_RS14990 NONE
        xylB NONE
JA116_RS15000 NONE
JA116_RS15005 3120377 .. 3120410 +  -4.5  -3.53012   ACTGACCAAAATCGC     TGCACTGACAGCCC TGATGAT GGGCGGGCAG-GCA     TTTGCGGCACAGGAC  55 175
JA116_RS15010 3121377 .. 3121398 + -14.5  -5.97575   GAATAATGCATTCAC           GCCGTCTTC AGCA GAAGACGGC            TTTTTTTTATCCGTT 100 47
JA116_RS15015 3122675 .. 3122692 +  -4.8  -3.33162   CGGCAGCATAACGGC             GGCGGT TTCCAC ACTGCC              TTCTGCCATCGCCTC  51 488
JA116_RS15025 3124906 .. 3124933 +   -15  -3.02461   TTAAATCACCCGCAA        TCCTGATACTGC CCCG GCGGTATCAGGA         TGTTAAAAACCGTTC 100 37
        kbaZ NONE
        agaV NONE
        agaW NONE
        agaE NONE
        agaF NONE
        nagA 3133243 .. 3133262 + -10.7  -4.80487   TTCCTTTCATTATGA            GGCGCAG TTCTCC CTGCGCC             TTTCTTTTCCTTGTG 100 42
JA116_RS15075 NONE
        kbaY 3135546 .. 3135575 + -17.2   -4.8048   TTCTGTAACTCGTCA       GGCGGCACTGTG TTCCCC CGCAGTGCCGCC        TTTTTCATCTGCGAA 100 33
        malX NONE
JA116_RS15090 3138446 .. 3138481 + -11.2  -2.73735   TGACAGAAAAAAAAT    TGGCGACCTTGCTG TATTCCGT CAACAGGGTCGCCA     TAATTACCGATGTTT  77 38
JA116_RS15095 3141555 .. 3141595 + -13.6  -4.79826   GATTCCTGCCCGTAA  AAAAACCGCGATAATTGT CATTA ATAATTATCGCGGTTTTG  TTTTTACTGCTGTCT 100 48
JA116_RS15150 3154115 .. 3154143 + -10.2  -2.52681   AACAGAAATAAAAAA        AGCCACCGGTCA CATAA TGACCGGGGGCC        GTCTCTGTTTACTAT  73 40
JA116_RS15160 3157151 .. 3157166 +    -9  -4.66938   GTCAGCAATCTCAAA              GGAAGC CGGT GCTTCC               TTTTCTATTACCGGT 100 267
        tssF NONE
        tssG NONE
JA116_RS15275 NONE
JA116_RS15280 NONE
JA116_RS15285 NONE
JA116_RS15290 NONE
JA116_RS15295 NONE
JA116_RS15300 3190935 .. 3190959 +   -13  -4.14422   ATTAGGCTGATTTAT          CTCCCCTATT ACAGA AATAGGGGAG          TGTTTTTCTCTGTGA 100 31
JA116_RS15370 NONE
JA116_RS15595 3241674 .. 3241692 +  -7.4  -5.60993   TCCACATCAGTTCAA             TCCCGC CCTATTT GCGGGA             TTTTTTTATGCCCAC 100 44
JA116_RS15600 3242003 .. 3242018 +  -6.8  -2.92091   CTTTAACAGTACAAC              CGCAGT AACG GCTGCG               TATCTGAATAACTGT  58 18
JA116_RS15605 3242791 .. 3242818 +  -2.9  -2.63208   ACGGCAGTATTGACG        GGAAATTAA AAGCTATTAA TTAATTTCC         ACTTTTTAAATAAAC  41 3
JA116_RS15610 3243715 .. 3243734 +  -7.1   -5.0916   AGCATAATTATTTTA            TGCCGCT TTAACC GGCGGCA             TTTTTATATTCCAAC  90 34
JA116_RS15615 NONE
JA116_RS15620 3245053 .. 3245065 +  -3.3   -3.5241   ATCCTCGATATGTGC                TGCGG CAG CCGAA                TGTTTATGCACGATA  49 46
JA116_RS15625 NONE
JA116_RS15630 NONE
JA116_RS15635 3246069 .. 3246084 +  -7.5  -4.90778   AGACCCGTTACTTGA              CCCGC TTTCTT GCGGG               TTTTCTTTCCCTAAC  85 51
        folD NONE
        ybcJ 3247486 .. 3247503 +    -7  -5.61596   TAATTTGTGAATAAA             CCAGAG CATCGA CTCTGG              TTTTTTTATCCGCAT 100 44
        cybB 3248095 .. 3248117 +  -9.1  -4.77036   CGCTGAAATATAAAA           CGCCCGG CAGTCATAA CCGGGCG           TTTTTAATACTGAAG 100 49
        ppiB NONE
JA116_RS15675 NONE
        purE NONE
        purK 3253380 .. 3253400 + -10.4  -4.77757   ATAGTTCCATTCTGA            TGCTCGGC GTTCA GCCGGGCA            TTTTGCTTTTTACGC 100 62
JA116_RS15690 3254932 .. 3254945 +  -5.2  -4.07568   TCACTCCACAGCGTA               CGCC GCAACA GGCG                TTTTCCGGCACCGAG  65 260
        tesA NONE
JA116_RS15710 NONE
JA116_RS15715 NONE
JA116_RS15720 NONE
JA116_RS15725 3261635 .. 3261656 + -15.9  -5.42975   AAGACAACAGCAAAA           CGGCCTCTG GTGA CAGAGGCCG            TTTTTATTTATCTCA 100 50
        copA 3274228 .. 3274256 + -14.7  -5.52023   CTGACCTGATACCTG        ATAAGGGAGCGAA TAA TTCGCTCCCTTAC        TTTTTTCTTACTGAT 100 44
JA116_RS15765 3275143 .. 3275171 +  -2.3  -2.58544   CGGCGACCATAATCT        GCCGTCCATTTTG TGT TAAACTGGCAGGC        CTTGTGACACTGCCG  40 7
        ybaK 3276122 .. 3276133 +    -3  -4.14945   GCGCCCCGGGTATGG                TTCT GTAA AGAA                 TTTCGTTCTTATTGA  60 455
JA116_RS15785 3282920 .. 3282939 + -13.6  -5.65177   CCTGCTGAAATACAA            GCCCGGTT AGCG AACCGGGC             TTTTTTTATGCATAT 100 51
        rsmS 3295330 .. 3295360 + -11.9  -3.03104   CAAACTGCGCAATAC       TGACGGTGGTCAG GCCGG CTGAGCGCCGTCA       TCCTTCTCTTTTCCC  86 4
JA116_RS15865 NONE
JA116_RS15870 3304378 .. 3304393 +    -9  -5.79595   GCTTAAACATAAAAA              GGTCAC ATTA GTGACC               TTTTTTATTTTCACG 100 45
        tomB NONE
         hha 3305773 .. 3305791 +  -4.6  -4.10657   TAAACACCGGGTATA             CCGAAAAT TTT ATTTTCAG             TTTTCACCACTATAA  63 253
        tesB 3307301 .. 3307337 + -11.6  -5.45726   AACGTCCCGGCAATA   AAAAGCCCCCGCTGCAC ACCC GTG-AGCGGGGGCTTAC    TTTTTTTCGGCTATG 100 40
JA116_RS15920 3314406 .. 3314426 +  -2.6  -3.57144   AGCCGTTACCATAAA            CCTCAT CTTTTTATA ATGAGG            TTTACCGATGAAACG  48 44
        queC 3315143 .. 3315163 + -11.8  -5.04175   AATAATCATCTGTTA            CGCCCGGT GACCG GCCGGGCG            TTTTTCTGTCCTTCG 100 36
JA116_RS15975 3326237 .. 3326249 +  -9.1  -2.88861   GTCACTGTGAATGCA                CCGCA GCC TGCGG                TGTGTGAGGATAATC  67 91
        ampG 3327799 .. 3327814 + -10.4  -6.25741   TCAAAAGTTTATAAA              GCCGGT TTTA ACCGGC               TTTTTTTTATTCTTT 100 72
JA116_RS15985 3328769 .. 3328792 + -10.3  -4.56597   ATCACATTTTTTCAC          TGCGGAGGG CAAAAA CCCTCCGTA           TTTTTACCAAGAAAC 100 41
        cyoA NONE
        cyoB NONE
JA116_RS16000 NONE
JA116_RS16005 3332980 .. 3332992 +  -6.3  -2.61199   TATGTACAACCTGAA                CATCA ATA TGATG                GTTGATTAAGAGTTG  54 4
        cyoE 3333915 .. 3333947 + -17.9  -3.72576   CACACTTTCTGTAAT      AACAAAATGGCAGGG CTT CCCTGCCATTTTGTG      TTTAGTAAAAACCAC 100 43
JA116_RS16015 3335757 .. 3335767 +    -4  -5.63103   ATTCACTGGTCATCT                 TAAC ACT GTTA                 TTTTTTTCATTGAGC 100 415
        panE NONE
        yajL 3337557 .. 3337582 +  -8.3   -3.6869   CAACAAATAAAAAAA         CGCCCGGCTGTT TAT GATA-CCGGGCG         TTTGAGATTACTGTA  73 31
        xseB 3341382 .. 3341397 +  -7.5  -3.15999   CCTGAAAACGACTGA              CCGCC CGGATC GGCGG               TTCCCTGTGTGAACG  62 26
        ispA 3342345 .. 3342358 +  -5.2  -3.64488   TAACAGCTAATCCGT               CCGG CACGTT CCGG                TATTTTCAGAAACTT  59 31
         dxs 3344290 .. 3344310 +  -5.4  -5.72616   TCCGGACACAAAAAA            CCCTGC ATCACATCA GCAGGG            TTTTTTTATGTCACT  91 50
JA116_RS16110 3354525 .. 3354537 +  -6.3  -3.71998   ATAATGAACTATTGA                TAGGT AAA ACCTA                TTATATTAATCGGTA  63 118
JA116_RS16115 3355266 .. 3355281 + -10.4  -5.64274   TAAGAGATACAAAAA              CCAGCC TGCG GGCTGG               TTTTTTTGTGCCTGA 100 52
        sbcD NONE
JA116_RS16140 3364564 .. 3364574 +  -2.4  -4.56597   TGAACTGAAGAGAGC                 ACGG AAA CCGG                 TTTTTCCGACAAAAA  60 178
JA116_RS16145 3365320 .. 3365336 + -10.8  -5.93809   GTTAAAATATGCCTT              GCCCGC CTTGT GCGGGC              TTTTTTTTATCAGGC 100 136
        rdgC 3367397 .. 3367413 +  -5.8  -4.81083   ATACCCGCTGTTTAT             GCCCACG GCAG CG-GGGC              TTTTTCATCGTTACC  78 81
JA116_RS16165 3368901 .. 3368917 +  -4.3  -4.63527   CCTGCTGGATGGATA              ACACGGT GTA GCCGTGG              TTTTTGGCATCCTGC  72 112
        plsY 3376538 .. 3376551 +  -9.5  -5.71712   AAGAGGATTAAAAAA               GGCGC ATCA GCGCC                TTTTTTTGTGTCCGG 100 30
        rpsU 3378306 .. 3378331 + -13.3  -3.91357   TAGTTGCAGTTAATG         GCCGTGTTTCC GGAA GGAAGCGCGGC          TTATTATCGTTATCA 100 77
        dnaG 3380171 .. 3380184 +  -2.3  -3.14132   GAACAGCCCTGCATG               CCATG TCAC CAAGG                TTCATGGCCGAAGAA  43 94
        rpoD 3382167 .. 3382185 +   -16  -5.60993   ATCAGAGCATTATCA             GGCGCCGT TTA ACGGCGCC             TTTTTTTATGCACCA 100 52
JA116_RS16230 3382450 .. 3382469 +  -7.1  -5.09225   TTATCAGTGTATTAA            GCCACTC TTTAAC GGGTGGC             TTTTTTACATCCGGT  90 54
JA116_RS16235 3387588 .. 3387624 + -22.4  -4.68384   GCCGTTTTATTATCA    GCGCCCTCCCGGAATG TGGCC TGTTCCGGGAGGGCGC    TTTTATTACCTGCCT 100 41
        ampR 3399540 .. 3399550 +  -8.2  -3.57144   ACAACTCATGCATAC                 CGGG GCA CCCG                 TTTACCGGTGAACAG  71 373
JA116_RS16300 3409168 .. 3409211 + -15.4  -3.69395   CCGGTTCTGATAAGA CGGAAAGCAAAACGGCCTGC ATAT GCAGGCCGTTTTTTTATCTG TTATTAACTGATCAG 100 31
JA116_RS16315 3414296 .. 3414308 +  -6.3  -2.72371   ACAGAAAATAAAACA                GATGT TCA ACATC                ATATTATTTAAGAAA  54 2
JA116_RS16320 3415279 .. 3415312 + -12.5  -3.12253   CTTATCAGACTATTT     TTCCGGCCGG-TGC AATTACA GCAGCCGGCCGGGA     TACTTTCTCTTCCTG  93 41
JA116_RS16325 NONE
JA116_RS16330 NONE
JA116_RS16335 3416648 .. 3416659 +    -3  -3.66018   CGCGGTCTTCATATT                TACT ACTC AGTA                 TTGTTGAGCTAATAA  51 179
JA116_RS16340 3417119 .. 3417136 + -11.3  -4.92828   TAATATATTATTAAA             CATCCGC TCCG GCGGATG              TTTCTTTTTCAGTTT 100 73
JA116_RS16355 3419835 .. 3419853 +   -16  -3.44051   CCTGAAATGAAACAA             CCCCGCGT CAG ACGCGGGG             TTGTGATAGTGAGGA 100 49
JA116_RS16370 3423040 .. 3423064 + -12.3  -4.07246   GCTTTGTCTGATTTT          TAAAGGTGACA GGA TGTCACCTTTG          TTTCCTTTGGCATAA 100 41
JA116_RS16375 3423443 .. 3423455 +  -4.1   -5.1356   GGCTGAAAAATGCCT                TTGGT CAC ACCGA                TTTTTGTTAATACAG  78 3
        diaA NONE
        yraP 3424702 .. 3424718 +    -8  -5.63504   GAAACCGATAAGAAA              CCTGAC TTAAT GTCAGG              TTTTTTTATGGCCTT 100 56
        gltB 3434097 .. 3434109 +  -4.7  -2.89683   TCCGCAGGTGAAAGA                GCAGG CCA CCCGC                TGTCTCGGCTGCGGT  49 162
JA116_RS16440 3439763 .. 3439778 + -11.8  -6.11644   CTAATCTGTACAAAA              CCGCGG TTTC CCGCGG               TTTTTTTTTGCCTGA 100 37
JA116_RS16445 3441404 .. 3441430 + -16.6  -4.86731   CGCCGTAAATATAAA         CACCGCGCCG CGTAAAA CGGCGCGGTG         TTTTATTTCAGGCGG 100 49
JA116_RS16460 NONE
JA116_RS16465 NONE
        tauC NONE
        tauD 3448929 .. 3448944 +  -2.6  -2.80074   GCAATTACACACATA              TAATTC ACCC GGATTA               TGCTATTCTGCCGGA  42 148
        degS 3450113 .. 3450128 + -10.4  -4.32857   TAAGGTGTAAAAAAA              GAGCGG ATAT CCGCTC               TTTCTGTTTACAGCA 100 51
JA116_RS16520 3456437 .. 3456456 +  -4.2  -3.14211   GATAAGTCTTTTTAC            CGGCTGAT AAAT GTCAGCCA             TTAATACACAGACAT  49 19
        kdsD 3457536 .. 3457551 +    -4  -3.94067   ACAGTTATGGAAAAA              GCCGCTA AAA TA-CGGC              TTCTTATCTGTGATG  59 98
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN 3461348 .. 3461364 +  -3.7  -3.74747   CATCCCGCCCTCAAA              TCAGC GTAAACA GCTGA              TTTGATACACATTGA  56 4
         hpf 3461748 .. 3461774 +   -13  -3.44527   AAAGCAGTGCTCTGA         TCCCGGTTACCA TGG TGGTTGCCGGGA         TTCTGATCCTAAGTG 100 93
        ptsN NONE
        rapZ NONE
         npr 3463597 .. 3463629 +   -12  -4.66938   ATTAATTATCAAAAT     GAGCACCCCC-CTCC TTCT GGTGTGGGGGTGTTC      TTTTGTATTGGAAAT 100 156
         rnk 3464449 .. 3464461 +  -9.1  -3.65812   CGGGTTTCAATATCG                TCGCC GGT GGCGA                TTATATTGGCCCACA  73 404
JA116_RS16585 3466816 .. 3466830 +    -7  -3.55487   AGCAGACGATCACTG               CCGCGG TGA CCGCAG               TTATAGTTGATATCC  61 404
        aroQ NONE
        accB 3480498 .. 3480510 +  -4.8  -3.88232   CGCACAGGCAATCCA                TCCG GGATA CGGA                TTCTTATCTGAAAAC  59 273
        prmA 3482601 .. 3482651 +  -4.8  -4.77567   TTGGTATATAAATCG TGCGTTTGCGTGATTCAG-TGAA TATATT TTAAGCAGTTTCACGCAAACGCA TTTTATTCTGAAAAT  74 53
        dusB NONE
         fis 3484183 .. 3484207 + -10.8   -5.5353   GCATTGAACCGAAAA          GCTCTTTCAG GATAA CTGAAAGGGC          TTTTTTGTTAATATC 100 56
JA116_RS16670 3485655 .. 3485666 +  -5.8  -4.99568   TTAAAAAGCAATAAC                CGGA GTGT TCCG                 TTTTATTTCCTCTTC  82 73
JA116_RS16675 3486568 .. 3486582 +  -5.6  -2.88663   CCAGAGTGCATCAAT               CCGCTC GCG GAGCAG               TGTGTGCCGCTCACT  49 465
JA116_RS16685 3488199 .. 3488214 + -10.4  -5.05712   TGAACTCATTCTGAT              GGCTGC TCCG GCAGCC               TTTTTCATTATTTAT 100 46
JA116_RS16690 3490782 .. 3490795 +  -3.8  -4.87803   CATGAAGATCAAATC               CGGT TAAGAC ACCG                TTTTGTTTGCGGATC  73 313
JA116_RS16700 3494093 .. 3494127 + -15.9  -2.63913   ATCATAATCAGGATA    CGGCAGATAACGGGCA AAAT TGCCCGTTATC-GCTG     TACTGTCCGGTAATA 100 40
JA116_RS16765 3511316 .. 3511342 +  -7.2  -3.87952   GATAAGTAAGTGACT        GCCGCGCCAGG AATCCA CCA-GCGCGGC         TTCATTTTATTCTTC  70 32
JA116_RS16925 3536715 .. 3536730 +    -9   -5.4833   CAGAAATAACATCAA              GGCTAC TTCG GTAGCC               TTTTTTATTGCCTAA 100 42
JA116_RS16935 3538396 .. 3538409 +  -8.1  -3.50832   CGCTAATTAGTTAAA               GGGGA GAAA TCCCC                TCTTTGAATTTCAGG  68 35
JA116_RS16970 3544627 .. 3544638 +    -3  -3.04144   TCTCCCGAAACTTTT                CTTT CAAA AAAG                 TATTGACACTACCAC  44 74
JA116_RS16975 3545188 .. 3545201 +  -2.3  -3.18735   TGTACCGAAACCTGA               CAGCT ATAC AGCGG                TTAATGAGATGTTCA  43 76
JA116_RS16980 NONE
JA116_RS16985 NONE
JA116_RS16990 NONE
JA116_RS16995 NONE
JA116_RS17000 3546412 .. 3546437 +  -3.4  -2.84098   ATAGTTTACGCACAG         CTTGATTTAG TGGCAT CTAAGTTAAG          TGGTTCATTAGACAA  43 132
JA116_RS17005 3546951 .. 3546963 +  -4.1  -2.57274   CTGGGGAATTCCACA                TCTGA GTT TCAGG                ATATTGATTATGGAA  45 78
JA116_RS17010 NONE
JA116_RS17015 NONE
JA116_RS17020 NONE
JA116_RS17025 NONE
JA116_RS17030 NONE
JA116_RS17035 NONE
JA116_RS17040 NONE
JA116_RS17045 NONE
JA116_RS17050 3551117 .. 3551152 +  -2.1  -5.95539   TCCGCAGGTCATGAA    TGG-ACCATGTTTT ATAGTTTTC AAAATATGGTGCCA    TTTTTTTATTTAGAA 100 397
JA116_RS17075 3556498 .. 3556525 + -10.6  -4.89339   CTGCTTTGTCTGCAA        TATCA-CCGGGGC AAA GCCCCGGCTGTTA        TTTTTCTCAGTCGTT 100 203
        rsmD 3566269 .. 3566288 +  -2.1   -2.6155   ACGCAGACGACTGAA            CAGGAGT CCGTAT GTTCCTG             ATTAATATTGGCCGG  40 5
JA116_RS17125 3566619 .. 3566654 + -11.2  -3.04188   ACGGATAAACCGTGT    CCCCTGCATTGACAGCG TTC CGC-GTGAATGCAGGGC    TATCTCCTTATACTC  72 59
JA116_RS17135 3567690 .. 3567732 + -13.6  -3.12999   TAATTCTGCTCCCCG CAACAGGAGCGCACAATT TGCCAAT AATTATGCGCCCCTGTTG TTGACTCTGGAGTAG 100 38
JA116_RS17140 3570239 .. 3570256 + -11.3  -5.71712   GTTACTGACTGAAAA             GGGATGC TGCG GCATCCC              TTTTTTTATCTCACC 100 47
JA116_RS17155 3572249 .. 3572285 +  -8.1  -3.02109   GATTGTTCATTTTTC   TGACA-TGCAGAGGCG CTATCC TGCCTCTGCGCTGTCG    TCTGTATCACATTTT  62 39
JA116_RS17160 3573561 .. 3573587 + -18.1  -3.02471   TTGATATGCTGTTCT         GTAACGCCCGG GATAA CCGGGCGTTAC         TGTCTGTAATCCGCC 100 46
        frdA NONE
JA116_RS17190 NONE
        frdC NONE
        frdD 3582468 .. 3582512 + -14.5  -2.62396   CTGTAATCGGTGTCC GTTACAAAAAGACCGGCTC CTGAAGT GAGCCGGTCTTTTTTTATC TGCTGTCAGGCCATC 100 35
JA116_RS17225 3587690 .. 3587713 + -12.4   -4.9934   GAAAATATAAAAAAA          CCGGCGGTCA TTTC TGAGCGCCGG           TTTTTATCATATTAT 100 231
JA116_RS17235 3591326 .. 3591351 + -19.1  -3.36671   CTGAAGAGAATAACG         GTCAGTCCGCC TGCG GGCGGACTGAC          TTGTGACGTTACAGT 100 37
JA116_RS17250 3593778 .. 3593824 +  -4.6  -2.72144   CACGTTTAATGCCGA CCCGGT-T-CAGAGGGGTTATT CAGCC AATATCCCCTCTGAATATCAGG ATTTACCCCGCATGC  48 55
        cstA NONE
JA116_RS17260 3596438 .. 3596457 + -10.8  -5.76633   GACTTCATGTAAAAA            TACCGCAA TAAT TTGCGGTA             TTTTTTTATGTATCA 100 52
JA116_RS17270 NONE
JA116_RS17275 3598685 .. 3598704 +  -9.2  -4.10164   TTATCCATAAAAAAA            CCGCCGGA TTTC TGCGGCGG             TTTCTGTGATAGTCA  85 470
        eptB 3612027 .. 3612057 + -18.4  -2.78547   ATGACTGAATAACAA       AAAAACCGCCGCTG AAT CAGCGGCGGTTTTG       TAATTCATCACGTAA 100 105
        epmB 3613690 .. 3613711 +  -3.7  -3.03124   AAAACACCGATCGAT           CTCCG-TCTG CGT CAGAGCTGAG           TATTACCACGTAAAC  46 5
JA116_RS17350 3614753 .. 3614774 +  -2.2  -5.76633   ATCTGAATAAAAAAA           CCACCATT TATATC GACGGTGG            TTTTTTTGTATCTGA  85 186
        aspA 3624096 .. 3624119 +  -7.4   -5.5074   ACATAGAACATAAAA          GCACGTCATC GCAA GGTAACGTGC           TTTTTTATTACCTTA  95 57
JA116_RS17395 3625528 .. 3625545 + -12.7  -5.13722   TTGTCAACGGCCCAA             TCCGCCC TCCG GGGCGGA              TTTTATTTTCCTGCG 100 72
JA116_RS17400 3626237 .. 3626268 +  -2.5  -3.60048   TGCGCCCGTATTCTG      CATAAAAAGAG CACACTCACA CTTTTTTTATG       GTTTTTTGACAGAAA  50 63
JA116_RS17405 3626521 .. 3626542 +  -9.5  -5.64274   AAGCTCTCAAAAAAA           CAGACTTGT TCGC GCAAGTCTG            TTTTTTTATGCGTGC 100 144
JA116_RS17475 3649846 .. 3649869 + -16.8  -5.76633   CCGGCTCTGTGACAA          GACCCCCGAT AATG ATCGGGGGTC           TTTTTTTATGTCTGA 100 63
JA116_RS17480 3650665 .. 3650675 +  -8.2  -3.10187   ACCGGTTGCCGATAC                 GCGG GTA CCGC                 TCCTTTCTGTGTGTG  62 429
JA116_RS17490 3654466 .. 3654487 +  -6.6  -2.91582   CACACACCTGTAACA           CA-CGGAGG TTATT CCTCCGCTG           TCTGTCACTGCAATA  58 191
JA116_RS17495 3655482 .. 3655504 +  -7.6  -5.40625   AAAATGAGAGTAAAA           GCGCCCTGCT GAT ATCACGGCGC           TTTTTTCTGTACTAT 100 55
JA116_RS17525 3661288 .. 3661314 + -15.1  -4.23213   CTTTGCCAACAATCT         GAGGCTCCGCC ATACC GGCGGAGCCGC         TTTGTTCAGTCTGCC 100 90
JA116_RS17535 3662764 .. 3662785 +  -5.9  -3.27029   TGCGACCCCCAACCC           GGTGGTTGAG GTG CT-GACCACC           TGTTCATTGCTGACA  54 218
JA116_RS17630 3679220 .. 3679261 +  -3.5  -3.21934   AACGTTTTCAGCAAA TCTGGGACCCTCTCCGCGGA TAA TCCGCCG-GCCTGTCCCTGA ATTTTCTCCGCCCCG  48 3
JA116_RS17635 3680649 .. 3680664 + -10.4   -5.1675   CAATAAGCCAAAAAA              GGAGGC AACC GCCTCC               TTTTTTACTGCCTGA 100 300
JA116_RS17660 3688850 .. 3688873 + -16.8  -4.96848   ATTGATAAAAAAAAA          TCCCCCTGTG GCAA CACAGGGGGA           TTTTTATCTCAGCGG 100 93
JA116_RS17670 3697838 .. 3697852 +  -4.3  -5.00412   AAAACCGCGGTACAT               CAGAT AACGC ATCTG               TTTTTGCTTCTCTTT  79 83
JA116_RS17680 3698881 .. 3698892 +  -5.8  -3.04144   AACCATAAGTAACTA                TCCG TATC CGGA                 TATTACAGATAAAAC  54 402
JA116_RS17685 3699762 .. 3699789 + -11.4  -5.03314   TTACTTCTGATATTT        TCAGGCCTCTTT TAAT AAAGGGGTCTGA         TTTTTTGAAAATACA 100 31
JA116_RS17690 3700583 .. 3700599 +  -9.3   -2.7464   GTGCTGTTCAGCACA              CCGGCAG CCG CGGCCGG              ATTTAACACTAACTT  70 100
JA116_RS20525 NONE
JA116_RS17700 3704258 .. 3704270 +  -3.3  -4.50976   TAGACATACATAAAA                TCCGG AAA CAGGA                TTTTATCCTGTCAAA  63 189
JA116_RS17705 3705214 .. 3705240 +  -7.4  -5.94713   ACAGGCACCCGAAAA        CCCGCGCTAAT CCGAGT ATTA-CGCGGG         TTTTTTTTATCGCAT 100 58
JA116_RS17710 NONE
JA116_RS17715 NONE
JA116_RS17720 3709138 .. 3709165 + -17.2  -2.89564   AACAGTAACCCGGTA        CTCCGCAGATAA CTGA TTATCTGCGGAG         TCTCTCCCCTCAGCC 100 33
        hdcC NONE
JA116_RS17735 3714089 .. 3714125 +  -5.1  -2.90763   CTGCCCCCTTACGGT   TCGTTGCCGGCGCAGA CGCCAA TCC-TGCCGGCAACGC    TCTCTAACCTATACA  52 64
JA116_RS17740 NONE
        hisS 3717005 .. 3717022 +  -9.9  -6.04324   GTAATATTATCAAAA             GCACTGT TTTT ACAGTGC              TTTTTTGTTTTTTGA 100 52
JA116_RS17755 NONE
JA116_RS17760 3720448 .. 3720458 +  -2.4  -2.55999   GACACTGATGATGAA                 ACCG GCA CGGA                 GTTAATCTGAACTGA  39 10
JA116_RS17765 3721467 .. 3721483 +  -9.3  -5.65177   GCGATGTTCACTCAG              CCCCCGG TTT CCGGGGA              TTTTTTTATACGTAT 100 63
JA116_RS17770 NONE
JA116_RS17775 3722892 .. 3722926 + -10.1  -3.60296   TCCAGCGCCAGGCGC    CCGGAAAGAT-GCACC AGCC GGTGCGGTCTTTCCAG     TTTCCGGTAGGCATC  77 158
JA116_RS17800 NONE
JA116_RS17805 NONE
JA116_RS17810 NONE
JA116_RS17815 NONE
        modD 3731751 .. 3731789 + -13.2  -4.37092   CTATAGTGAGTTAAA   GGATAAACCGGTCAGGTC ACT GAACCGACCGTTTTATCC   TTTTGTCCGGCAAGT 100 58
JA116_RS17825 3733799 .. 3733819 + -14.1  -3.65314   CAATGCCGCATACAA            TCCCGCATA AAT TATGCGGGA            TTGTTACCGCTTACG 100 50
JA116_RS17860 NONE
JA116_RS17865 3744110 .. 3744131 + -11.7   -5.5454   GATTAATACAGAAAA           GGGATAACT GAAC AGTTATCCC            TTTTTATTTATTTGA 100 48
JA116_RS17975 3765699 .. 3765729 +  -7.7  -3.28712   TTTATGACGTAAAAA      TGGCAGG-ATGCAG ACAT CTGTATGCCTGTCA       TTCTCCGCAAAAAGG  66 41
JA116_RS17980 NONE
        sctJ NONE
JA116_RS17990 NONE
JA116_RS17995 NONE
JA116_RS18000 3768627 .. 3768637 +  -5.4    -4.652   TTAAATTGTTGCTGA                 CTGA TAT TCAG                 TTTTTGCGCTAATTT  75 281
        ahpC 3775069 .. 3775087 + -14.6   -5.0133   TCTTATTTACTGTTA             TCGGGTGC ATT GCACCCGA             TTTTTTAAGGGAATA 100 60
        ahpF 3776722 .. 3776741 + -13.6  -5.95539   GTTGTTGTACCCAAA            GGCATCCG GGGG CGGATGCC             TTTTTTTATTTCCCG 100 52
JA116_RS18050 3779768 .. 3779788 +    -4  -4.82154   ATCATAAACAAAAAA            GGCTTG CAGTCAACA CAAGCC            TTTTTAATATCCGTT  71 34
JA116_RS18120 3808010 .. 3808020 +  -8.2  -3.30159   ATCAGAGCAATGTGA                 GCGC CCG GCGC                 TTATCGGGGGATTAC  69 58
JA116_RS18125 NONE
        narH NONE
        narJ 3814072 .. 3814084 +  -3.3  -2.68279   TTCCCCTGCGGCGAA                AGGAG TAA CTCCA                TGAATTTCCTGAATA  42 10
        narI 3814801 .. 3814816 + -10.4  -5.60993   AAATGCACAGTTTTG              GGTGGC TCCG GCCACC               TTTTTTTATCACCGA 100 65
JA116_RS18150 3817878 .. 3817890 +  -5.5  -2.87564   AGTACGACGTCATCT                GACGG AGT CTGTC                TCTCTGCGGCGGTAC  50 24
JA116_RS18155 3818559 .. 3818588 +  -2.1  -4.21936   CGGACGCCTTTTGCT       GGCGGTCTGAATT TGGT AATTAATGCTGCC        TTTTGCAGTTATAGC  55 16
JA116_RS18160 3820255 .. 3820273 +   -16  -5.23016   TCATCATTATGAAAA             TGCCCGGC ACA GCCGGGCA             TTTTTTGACTTATTT 100 42
JA116_RS18170 3822567 .. 3822579 +  -9.1  -3.04144   TTCATTAATAAACCG                GGCCA GCG TGGCC                TGTTCCAGATAACCG  66 385
JA116_RS18180 3824332 .. 3824346 +  -7.1  -5.31545   GATATCCGCTAAAAA               GACCC TCTGC GGGTC               TTTTTTAGTCTTCTT  91 48
JA116_RS18205 3830195 .. 3830230 +  -6.8  -2.66873   GTCTGCAAGGACTGC    GCCCGCCACTGCATAAT AAA GTCA-GCGGTGGCAGGC    ATATTTCATGAAGCT  56 78
JA116_RS20550 NONE
JA116_RS18215 NONE
JA116_RS18220 NONE
JA116_RS18225 NONE
JA116_RS18230 NONE
JA116_RS18235 3835959 .. 3835982 + -14.6  -4.32034   CTGACCTCCGCTTAC          GCGCCGGTAT TCAC GTACCGGCGC           TTTTCCTCCTGCTGC 100 37
JA116_RS18280 3845713 .. 3845738 + -19.1  -4.58395   CGTAAAATAATTTAC         CGGCGGTATCC GGCC GGATACCGCCG          TTTTTCCGGGATAAC 100 31
JA116_RS18290 3848342 .. 3848361 +  -6.4  -2.62735   GCCGGTGCATTACCG            CCGGAAAA ATAA TCTTCCGG             TGGTGTGCCGCATAT  54 14
         vsr NONE
JA116_RS18300 NONE
JA116_RS18305 3850282 .. 3850308 + -13.8  -3.10389   AATACCCCGTTATAC         GGCGGATACTAA AAC TCAGTATCCGCC         ATTTCTGTACTTTCT 100 48
JA116_RS18310 3851132 .. 3851149 +  -5.6  -4.07687   AAAGTGTAAGCATTT             GTGTGA AAAGTG TCACAC              TTTTACCGGCGCGAT  68 451
JA116_RS18315 3851934 .. 3851950 +  -6.5  -2.50935   ATTGTTGTTATGCAT              CAGGAAG ATA CATCCTG              CTTCCTGCCTCACAT  53 66
JA116_RS18320 3854942 .. 3854961 + -10.8  -5.79595   TGCTGTAAGTAAAAA            GACGAAGA GGGA TCTTCGTC             TTTTTTGTTTTCAGA 100 50
JA116_RS18325 3856505 .. 3856520 +  -4.6   -3.0644   GTCTTTCAGTCATTT              CTTCGG ATTA CCGACG               TATTCAGAATTGCAT  50 186
JA116_RS18330 NONE
JA116_RS18335 3858338 .. 3858350 +  -3.3  -3.04398   ACCAGAACCTCGCTT                AGGAC TGT GTCCA                CTTTTGGAGGGGAAG  44 24
JA116_RS18340 NONE
JA116_RS18345 3859092 .. 3859140 +  -3.4  -3.74872   AAACTATATATTTTT C-TATTAACTATCTGATGATAAT TGCT GTTCTCACCAGATAGTCAATACG TTTCATCAAGTGCAT  53 39
JA116_RS18355 3862123 .. 3862137 + -11.4  -5.41143   GGGATTTGTGCGGTG               GCGGGA GAA TCCCGC               TTTTTTTCCGCACTG 100 482
        ampH 3863621 .. 3863651 +   -17  -3.00498   ATCTGTGATACTTAA       GAACATGCCCGC ATCAGGC GCGGGCATGTTC       TGTATATGAAGTGTC 100 33
        rtcR 3867481 .. 3867508 + -17.1  -2.87683   GCCGCTGAAATGACA        GAGCCGGTCAG CATTCA CTGACCGGCTC         TGTATACCGGGATCT 100 33
        pepA 3871564 .. 3871591 +  -7.7  -4.50976   AGCATAAAGGTAACG        GGGGATTGTGC TATCCT GAGCAATCCCC         TTTTCTGCTATCAGA  82 73
JA116_RS18400 NONE
JA116_RS18405 3875000 .. 3875015 + -10.4  -6.06723   GAATGAGTAGCAAAA              CCAGCC TCCG GGCTGG               TTTTTTTTTGCACAA 100 49
JA116_RS18410 NONE
JA116_RS18415 3876529 .. 3876551 +  -4.3  -4.15841   TGCGTGTTTACTTTG           TGTGATAAT TATTT ATTATCATA           TTTATCGTTTCATAC  61 66
JA116_RS18420 3877245 .. 3877260 +  -3.3  -4.42386   TACAGTCATTACACG              TGTGA CGGATA TCACA               TTTTGTAACTGACAA  63 115
JA116_RS18425 3877640 .. 3877653 +  -8.1  -4.68593   GCGGACACAAAAAAA               CCTGC CGCG GCAGG                TTTTTCAGTCATGGC  86 44
        argF 3879460 .. 3879475 + -10.4  -6.11644   GTATTTATTTCAGAA              CCCCTC AATT GAGGGG               TTTTTTTTTGCCTGG 100 240
        pyrB NONE
        pyrI NONE
        ridA 3881454 .. 3881474 + -16.9  -3.34089   GAGATGACGTTGATT            GAGCCCCCT GCA AGGGGGCTC            TGTTCATTATTAACC 100 74
JA116_RS18470 3885573 .. 3885585 +  -3.3  -3.70149   CATTTTTACACTTAA                CCGGA GTG TGCGG                TTTACCTGATGTCGC  51 81
        nrdD NONE
        nrdG 3888475 .. 3888487 + -10.5  -4.56597   TCATCCAGCCGCAGC                CCCCG CAA CGGGG                TTTTTGCGGCGACGG  95 109
JA116_RS18495 3889883 .. 3889893 +  -4.6   -3.5394   CAGTGCAAATCAAAT                 TCGG CTG CCGG                 TTTAAAGCCCCATTT  53 131
JA116_RS18510 NONE
JA116_RS18515 NONE
JA116_RS18520 3893414 .. 3893436 + -14.8  -3.36175   AGTAACAGAACAGAA           CGGGCGCGAT ATA AGCGCGCCCG           TTATCCGGCTTTATT 100 36
JA116_RS18530 3895344 .. 3895357 +  -6.7  -3.15579   GGCAGAGATTGCAGT               GACGA TATA TCGTC                TTAATACGGAATTAC  57 355
JA116_RS18555 NONE
        btsR 3902156 .. 3902182 + -16.5  -4.98255   AGGCGTATAAAAAAA         GCCCGGCAGGG ATATC CCCGGCCGGGC         TTTTTATGATTCAGA 100 59
        yhbY 3920744 .. 3920788 + -14.4  -3.56162   ATATTTATAAAAAAA TGCCACCGG-CAGATGATTTC TGAT GATATCGTCCGGCCGGTGGCA TTCCTTTCAGATTTT 100 48
        dacB 3923146 .. 3923175 + -12.9  -3.72576   ATTACTGAGTTGACA       ACAAAGCCCGGTA CAAG TGCCGGGCTTTGC        TTTGATAAGAGAAGC 100 33
        ispB 3928603 .. 3928622 + -12.2  -5.80364   ATCACAGAGAAAAAA            CGGGATCT GTAA AGATCCCG             TTTTTTTATTCCGGT 100 40
JA116_RS18700 3929886 .. 3929915 + -15.3  -3.57144   TAGTTATAAAAACAA       TAAAACCGCTAAT CATA ATTAGCGGTTTTA        TTTACGGCTCAAAAA 100 51
        argR 3931834 .. 3931859 + -16.1  -6.15536   TTAATCATACAAAAA         CCGCGCGGTAC TGAT GTCCCGCGCGG          TTTTTTTTCTTAGTT 100 48
         fbp 3934466 .. 3934482 +  -9.4  -5.68023   GTAAGAGAAGGAAAA              GGCGGT ATACC ACCGCC              TTTTTTTCGTTATAA 100 47
         ppa 3935100 .. 3935117 + -11.3   -5.7946   CAGAGACAAAAAAAA             CCGCTGT TTTC ACAGCGG              TTTTTTTATTCACAG 100 55
        msrA 3941909 .. 3941940 +  -5.2  -5.29742   GCTATACTGCACATC      CGCGCACAGA-CA AATTGGA TGCTCTGTGCGCC      TTTCTTTTTTTATAT  84 60
JA116_RS18750 3943515 .. 3943535 +  -2.6  -4.09685   TTTCACTCATTGCAC           TCAGATGGC GTTT GTC-TCTGA            TTTTCGGCGGTAAAA  56 117
JA116_RS18770 3946345 .. 3946362 + -12.7  -3.36341   TGTCACATAAAAAAA             CGCTGGC CTGA GCCAGCG              TCTTTCAAAGATGTT  95 50
        queG 3963936 .. 3963948 +  -7.7  -2.81547   TCACTGTCTGAATAA                TCACC GCT GGTGA                TCGTTCATCTGCCCC  61 436
        rsgA NONE
         asd NONE
        mscM 3970929 .. 3970942 +  -3.1  -2.88768   ATAAAATTTAAGATA               TACTG CTGA CAGTG                ATTCTTCATCTTAAA  43 60
JA116_RS18895 NONE
JA116_RS18900 3972353 .. 3972377 +  -9.2  -3.14793   TCTGAAAGAAAAAAA          CCGCTGGAAG AATAA CATCCGGCGG          CTTTCTGTTGATCTG  72 59
        rarD 3977346 .. 3977364 + -11.7  -2.87211   ATACTCTGTAAGACA             GCACCGG GTTCG CCGGTGC             TGTCTCCGGGAGGAT  81 40
JA116_RS18925 3978308 .. 3978334 +  -5.1  -3.88291   TTTCCAGCCGATATC        TTCCTGTTCGGC CAGA GCCGA-CAGGGC         TTTATCGAACTCATC  63 440
        cyaY 3985072 .. 3985121 +    -8  -2.62184   ACGGCACAAAAACTG TGCCGTCGCA-TATCA-GCCG-CGG TGC CCGGCGGCCTGATACTGTAACGGCC TGATATCCGAACGGA  60 53
        hemC NONE
JA116_RS18980 3990013 .. 3990026 +  -3.8  -3.08679   GGTGCAGATAATGAA               GCCT TACTTC AGGC                TCTTCAATGAACAGA  48 2
        hemX NONE
JA116_RS18990 3992651 .. 3992670 +   -10  -5.60993   TTTCTATGATACAGA            GCCAGTCC TGCC GGATTGGC             TTTTTTTATACCGGA 100 55
        rhlB NONE
        gppA 4012191 .. 4012205 +  -8.6  -3.78208   TTTCAGTATATTATC               GTCACA TAC TGTGAC               TATTTTACTCTGCGT  75 104
JA116_RS19100 4015359 .. 4015369 +    -4  -4.02532   GGTGACCAGGGTCAG                 GAAT CAT ATTC                 TTCTGTTTATTATTG  59 217
        ilvY 4018935 .. 4018945 +  -8.2  -2.83403   GAAAACGGGCAAAGG                 CGGC ATT GCCG                 GTTTCATCACGGAAG  60 52
JA116_RS19150 4027470 .. 4027485 + -10.4  -4.38637   TCCTGAAAAGCGAAA              GGGGCA CGAA TGCCCC               TTTTAACTTATTATT 100 35
        hdfR 4028772 .. 4028786 +  -9.2  -2.83273   CAGTTGATCGTAATA               CCGGTG TAA CGCCGG               TCATTGATGATTTAA  70 17
JA116_RS19195 4035354 .. 4035378 + -11.4  -4.66609   TGTCACAGGGTAACC          GGTAAGGCGG TTCAT CCGCCTCACC          TTTTTCAATAAACTC 100 21
         def 4039333 .. 4039378 +  -9.7  -4.31587   CCCGCAGTCTTTATC TGCCACAGACCGCAGCAGCGC ACGG GCACTGTTATTGTTTGTGGCA TTATTATTTTTACAG  93 43
         fmt 4040357 .. 4040390 + -11.8  -2.53244   CTGTAATTTTATTTC     GTAACCGGCATATC CTGTTC GGTATGCCGGTCAC      CCTTTCTCTTTATCA  81 35
        rsmB NONE
        trkA 4043116 .. 4043127 +    -3  -2.89607   GCCAAGTCCGTTCTT                CTTA TAAA TAAG                 TACTTAATATTTTGA  43 19
        mscL 4043671 .. 4043681 +  -3.2  -4.15932   TACTACTGGCCTCCC                 GGTA ACC TGCC                 TTATTGTGTTTTTCT  60 80
        coaA 4062473 .. 4062494 + -13.1  -5.08824   TTTTTCTGTTAAAAA           TAAACCGGC TCAG GCCGGTTTA            TTTTTTGAATCCACA 100 45
        trmA 4074791 .. 4074813 + -11.4  -5.42514   GCGTTTCCCCGGAAA           GTTCTTGATC AAT GATCAGGAAC           TTTTTTACTTTATGA 100 49
JA116_RS19500 NONE
JA116_RS19505 NONE
        cbiM NONE
JA116_RS19515 NONE
JA116_RS19520 4078344 .. 4078365 +  -8.7  -5.31545   ACGGATACAAAAAAA           CCGGTCACT TCAG AGTAACCGG            TTTTTTCATATTCTT 100 42
        sthA 4081550 .. 4081569 +  -6.4  -3.00994   CGAGTTTGCCGCTGT            CCAGTTGC GCCA GCAACTGA             TGTGTCTGAGCTTCA  53 525
JA116_RS19555 4084757 .. 4084767 +  -3.2   -4.1822   GAATTCCTGTAATTC                 TGTC AGC GGCA                 TTTCTTCCAGTGCCA  60 244
        argE 4090445 .. 4090471 + -12.3  -4.21908   CCCGGCATAACCTTC         TCAGCGGACAG CCTGC CTGTCCGCTGC         TTTTCCCTCATCATG 100 31
        metF 4091619 .. 4091652 + -12.7  -2.55085   GTGGCATAGAAAAGA     TAACGATATCATTGA GTAA TCAGTGGTATCGTTA      AATTATTTTGTATTT  86 32
JA116_RS19590 4093756 .. 4093777 +  -7.9   -3.5525   ACCACACTCAATAAA           GCCCCTGTG ATTT TACCGGGGC            TTTACAACAATATCT  68 45
        metJ 4104696 .. 4104724 +  -7.6  -5.24129   ACAGACATAAAAAAA       CGCCCTG--TGAAA TAT TTTCATTCAGGGCG       TTTTTTATGGAACAG  95 78
        priA 4107611 .. 4107642 +  -7.3  -4.59109   AGAATGATTAATAAA      CCGTCTGAATTTC ACTTAA GAAGCTCAGGCGG       TTTTTCACAGGTATG  81 151
        ftsN 4109733 .. 4109758 + -11.8  -3.96224   CTGAAGTTAATTCTG         TGCTGCCGGG AATATA CCCGGCAGCC          TTTCTCCATCCTTTA 100 65
        hslV NONE
        hslU 4111699 .. 4111732 + -12.6   -2.5054   AGACATAATATTATT     CAGACTGTACGGGTG TATGC TACCCGT-CAGTCTG     CGTTATTATTTTTGT  86 54
JA116_RS19670 4112725 .. 4112738 +  -5.2  -4.32951   GTAACCCGGATTATT               GCGG AATCTG CCGC                TTTCTTGATTCAGAT  68 37
        rraA 4113409 .. 4113425 + -13.7  -4.58466   CACAGACAGCAAAAA              GGGCGGA ATA TCCGCCC              TTTTGTCGTTATGAC 100 54
JA116_RS19685 4115015 .. 4115026 +  -4.4   -3.3862   CACCGCAGCGAATCG                CGTA CTCT TACG                 TTATCGCGTGTTTGT  51 41
        glpK 4116626 .. 4116645 +   -15  -5.24129   CGTTTTAACGCTCTG            CCGCCGGT TAAT ACCGGCGG             TTTTTTATGCGCGAA 100 56
        glpQ 4119400 .. 4119417 + -12.7  -4.95547   TGCGAAACAGAACAA             CGGGCAC CGCG GTGCCCG              TTTTCTTATTATCGG 100 53
         fpr 4121711 .. 4121732 + -13.7  -2.90194   TACTGGTGAGCCTGT           GGCAGCGGG TTTT CCCGCTGTC            TCTGCTTCAGAGGCT  93 32
JA116_RS19720 4122850 .. 4122878 +  -5.4  -2.83566   CGACACAGTAAACAG       TGGC-CGAAA-AGC AAA GCTATTTCGCGCCG       GTTTCACTATACTGT  50 30
        tpiA 4123771 .. 4123802 + -18.2  -2.82208   GACGCCTGAAAGCAG      CAATGTGCGGGGTA TCAT TACTCCGCACATTG       TATCGTAACTCGTTT 100 47
JA116_RS19735 NONE
JA116_RS19740 4127056 .. 4127071 +    -4  -3.62224   GTTTCTTTTTCATGA              TATACC TATC GGTGTA               TTATTCACCCAATAT  54 309
JA116_RS19750 4131801 .. 4131816 + -11.8  -6.11019   TGTGATTCATTTACA              GCGGCC GAAA GGCCGC               TTTTTTTTCATTTTT 100 49
JA116_RS19760 4133536 .. 4133547 +    -3  -4.17089   TGGTTACGTACCGCC                GTTT CATC AAAC                 TTTTCGGCCTTTACC  60 351
        cpxR NONE
        cpxA 4136082 .. 4136111 + -16.6  -4.20367   CGCTGAAACGCTCTG       TAGTTACCGGGG AACCCG CCCCGGTAACTA        TTCTTTCTTAAGCAG 100 35
JA116_RS19780 4137216 .. 4137228 +    -2  -3.84931   CCTATCATTAAAAAA                TAGA ATTAC TCTA                TTTAACTCTTTATTA  51 162
JA116_RS19785 4137813 .. 4137832 +  -2.2  -2.77926   ACGCTAGTTCTTTTT            TTTTACAA GGCA TTGAAAAA             TAATTCAATATCATT  41 3
JA116_RS19790 4138819 .. 4138837 +  -4.7  -3.51924   ACAAATACTCTAGCT             TGTAAAT TTATT ATTTACA             TTCTCTCAATACCAA  55 264
JA116_RS19810 4142309 .. 4142336 +  -5.7   -3.1855   TCCATTTAACCATAT        GACTGTTGCTTT CAAAA AAAGCG-CAGTC        TTAGCTGTTGGCGGA  55 525
JA116_RS19820 4143638 .. 4143659 +  -9.5  -2.79302   TTATTTGATAAACTA           TTACCCCTT AAGA GAGGGGTAA            TATGCTCAACATCGT  70 58
        trmL 4144193 .. 4144208 +    -9  -5.46698   TCAGACACAAAAAAA              GACAGC CTTA GCTGTC               TTTTTTACTTTTGGC 100 54
        envC NONE
JA116_RS19855 4149792 .. 4149811 +  -7.8  -2.60496   CACCGGTAATTAATT            CGTCATCG GTTC CGATGCCG             GTATTTCCCGGAACA  60 28
        rfaD NONE
        rfaF 4153933 .. 4153943 +  -3.2  -3.17051   TGAAGAGTTCCCCGT                 CATG CGC CGTG                 TGTTAATCGTCAAAA  46 9
        rfaC 4155293 .. 4155308 +  -5.4  -2.91274   TGTAACAGGGAAGAA              TCC-CCG GCA CGGCGGA              TATCATTCAGATCCA  49 407
        waaA NONE
JA116_RS19910 NONE
        coaD 4162049 .. 4162067 +  -8.1  -3.56854   CACCACTTCTATCTT             CTGTCCG CAGTT CGGGCAG             TTCTCTCCCTGTTTT  66 89
       coaBC NONE
         dut 4168623 .. 4168672 +  -5.7  -3.38514   TAACGCCGTTATCTC CGTCACTTTTCTGACAGTGGTAC TGTT GTACTGCTGTCAGCAGGCAGATG TGTGTTTGCTTTAAC  57 47
        slmA 4169323 .. 4169349 +  -3.6  -6.11644   TTAGTTAAACTACTC        ACCC-CGCCCG TTTTAT TGGGCGAGGGC         TTTTTTTTTACCTGC 100 49
JA116_RS19975 4171906 .. 4171916 +  -2.4  -3.56142   GATTCTTCAATATCA                 TCCG GTT CGGC                 TTCCTTATTGATCGG  47 114
JA116_RS20005 4179169 .. 4179196 +  -9.9  -3.71213   AAAATAGTATTCCCC        GGTTCCGGC AATTTCCCGC GCCGGAACC         TTTACACTTCTCTGT  80 34
JA116_RS20010 4179827 .. 4179850 + -10.3  -2.88366   GGCGGCTGGCATAGA          CGGCTCTCA GCTCGA TGGGAGCCG           GTTCTTCATTCAGCC  68 111
JA116_RS20030 NONE
JA116_RS20035 4184406 .. 4184435 + -15.1  -3.35679   ACCGCAAATACAGTA       CAAAACAGGCCGC AATT GCGGCCTGTTTTA        TTATCAGTAAAAAGG 100 43
        fdhD 4195578 .. 4195601 +  -5.2  -2.69151   ACCCGGAACGCCTGA          TCCCCTGACT ATTC AGCCAGCGGA           TGATATATCCACAGA  49 18
JA116_RS20090 4198114 .. 4198142 + -18.3  -3.56643   ATTATTGATACATTT        CACCGGGAACAGA TTC TCTGTTCCTGGTG        TTTACCGGATATAAA 100 44
JA116_RS20095 NONE
JA116_RS20100 4202479 .. 4202489 +  -3.2  -3.67102   CTGTAAAATTCAATG                 TCTC CGC GAGG                 TTCTGATTTATGTAC  51 9
JA116_RS20105 4203363 .. 4203382 +  -3.6  -2.66695   TGCATATAAAGTTAA            TAGGTATA CTGG TCTACCTA             CTATTTAATCGCAAG  44 92
JA116_RS20110 NONE
JA116_RS20115 4205273 .. 4205292 +    -5   -3.5627   CAGCGTATCGCCGTT            CCGCTCTGT GAT ACAG-GTGG            TTTCCCCGGTGATAT  53 352
        rpmH 4208677 .. 4208690 -  -2.3  -3.93695   TTTATTACTTAGAAA               CGGTC AGAC GAGCG                CGGCCTTTAGCACGA  53 1
        yidD NONE
        yidC 4206410 .. 4206434 - -15.7  -3.58565   TAAATAATACTATAA          GACCGGCAGAG ATT CCCCGCCGGTC          ACGGGCTTATTTTTT 100 32
        mnmE 4204664 .. 4204677 -  -5.9  -4.08216   GGATTCGTGGCAAAA               CGCCG CGGT CGGCA                TTTATATGGCTTGTG  68 303
JA116_RS20085 NONE
JA116_RS20080 4195434 .. 4195449 -  -6.8  -5.02476   AGATGGTGCAAAAAA              GCG-CGC AGT GCGGCGC              GGAAATTCTGTTTGC  90 162
        fdnG NONE
        fdxH NONE
        fdoI 4189886 .. 4189904 -   -16  -4.19276   TTAAAATGTCGAAAA             GGCAGGGG AAA CCCCTGCC             TTCTGAATAATCACA 100 59
        fdhE NONE
        selA 4187045 .. 4187057 -  -9.1     -3.54   ATGATGTGACAAATA                CCGGA CTT TCCGG                CCAGCCGTCAGATAG  73 437
JA116_RS20040 4184406 .. 4184435 - -17.3  -2.81089   ACCGCAAATACAGTA       CAAAACAGGCCGC AATT GCGGCCTGTTTTA        TTATCAGTAAAAAGG 100 29
JA116_RS20025 4181712 .. 4181743 -  -7.3  -5.44119   GTCAGTGTAAAAAAA      GGCCGGAACG-GGA TACAG TCCTCATTCCGGCA      TACACTATTATCAGA  95 51
        accA NONE
JA116_RS20015 4179388 .. 4179422 -  -2.7  -4.05033   GTCACCGTATACAAA    TCC-CCGACCTGCGGC TGTT GCGGCCAGTGGGCGGA     AGGGGTGGAAAAAGC  58 338
JA116_RS20000 NONE
JA116_RS19995 NONE
        tehA 4175352 .. 4175369 -  -5.5  -3.55419   AAAAACCATGAAACA             CCCTCAC AAAA GTGATGG              TCTTTAAAAAGCGAA  57 203
JA116_RS19985 4173567 .. 4173583 - -15.1  -3.49878   CAATCAAATTGATAA              CCGCCGG GAA CCGGCGG              CTGAATATTCCGGAG 100 106
JA116_RS19980 4171827 .. 4171858 - -11.6  -3.43033   GAGTAATACATAATA      CTCACAGCCCGC TGAAATAC GCGGGCTGTCAG       ACGACTTTAATTAAA  89 36
         rph 4170077 .. 4170094 -  -8.4  -5.29782   CACAGGCATAAAAAA             GGCGAC TATCAC GTCGCC              TTCTGATTAATTTTC 100 32
        pyrE 4169008 .. 4169024 -  -4.3  -5.40072   GTTCTCGGAAAAAAA              TCCGGGC CTG ACCCGTA              TCATGACCGGTCATG  90 374
        radC NONE
        rpmB NONE
        rpmG 4165373 .. 4165402 - -13.7  -3.21726   CCGGATAACAGGCAA       TAAAAAACCCGGC CGGA GCCGGGTTTTTTC        AATCAGAAAGCAGAA 100 42
JA116_RS19930 4164029 .. 4164059 -  -5.6  -3.82205   TTAACATACCAATAA       TAATTGGTAATG TTCTGTT CATTACCATTTA       AAATGCTCCCGATGA  63 23
JA116_RS20570 NONE
        mutM 4161668 .. 4161685 -  -8.5  -4.07568   GTGGCGCTGGCAAAA             GATGTGT GCGC ACACATC              CCGAATGTGGAAGTC  77 326
        rfaQ NONE
JA116_RS19895 NONE
JA116_RS19890 NONE
JA116_RS19885 4154819 .. 4154831 -  -5.5  -3.59979   GGCGGTTACGGTAAA                GGACA GTT TGCCC                TGACAGCAAAAGACG  58 108
JA116_RS19865 4150791 .. 4150803 -  -4.7  -2.62184   CTCCTTTTTATATCA                GCCCG TTA CCGGC                GGAACATCACACCGG  48 18
JA116_RS19860 4149490 .. 4149502 -  -6.2  -3.90318   CCACTACCGGAGAAA                CCGG TCGTG CCGG                TTAAACCCGCAGAGC  65 309
JA116_RS19845 NONE
        secB NONE
        gpsA NONE
        cysE 4144193 .. 4144208 -    -9  -5.76633   TCAGACACAAAAAAA              GACAGC CTTA GCTGTC               TTTTTTACTTTTGGC 100 56
JA116_RS20565 4139678 .. 4139720 -  -7.9  -2.84841   GTTCAAGAAAACTCA CTTGTCGACTCAGCAATAAC ATTG GTTATTGCTGAAACCAC-AG TTTTAATATCTATGC  61 316
JA116_RS19765 4133218 .. 4133233 - -10.4  -6.30182   TCAGATAAAAAAAAA              GCCCCT CGAG AGGGGC               TGTAAAAGACAGGGA 100 141
        pfkA 4127098 .. 4127124 - -12.4  -3.65828   ATATAAAGGGGTAAA         TTGCCAGCTGAT GTT ATCAGCCAGCAA         ACCGTATCACGCTGG 100 270
JA116_RS19730 4123770 .. 4123803 - -12.5  -2.91144   GGACGCCTGAAAGCA     GCAATGTGCGGGGTA TCAT TACTCCGCACATTGT      ATCGTAACTCGTTTT  93 91
JA116_RS19715 4121659 .. 4121671 -  -5.5  -3.39772   GGAAATGCGCAAACA                CCTGC GCC GCAAG                CCCGGTCATATCACC  54 93
        emrD 4119400 .. 4119417 - -12.7  -4.03586   TGCGAAACAGAACAA             CGGGCAC CGCG GTGCCCG              TTTTCTTATTATCGG 100 50
        zapB 4113409 .. 4113425 - -13.7  -4.86133   CACAGACAGCAAAAA              GGGCGGA ATA TCCGCCC              TTTTGTCGTTATGAC 100 223
        rpmE 4104696 .. 4104724 -  -7.6  -5.77988   ACAGACATAAAAAAA       CGCCCTG--TGAAA TAT TTTCATTCAGGGCG       TTTTTTATGGAACAG 100 65
        metB NONE
JA116_RS19625 4100252 .. 4100284 -   -18  -3.33885   AAGTGAAAGTAGTAA      CGGGATGCAATTAA ATCCG TTAATTGCATCCCG      CCGGGATTGTTTCTG 100 277
         ppc 4097141 .. 4097162 -  -8.7  -5.40072   CTGCCGCCAAAAAAA           TGGCCGC AAATAAAG GCGGCCA            TCCGGGGTGAAAAAA 100 53
JA116_RS19610 4095883 .. 4095895 -  -9.1  -2.87931   GTTATTGTTCACACA                GACCG TGG CGGTC                AGTATTGCTCAGCAG  67 325
JA116_RS19600 4094579 .. 4094603 -  -3.5  -4.02021   AAGCAATGAAGGAAA          GACCGAAAC TATATAT GTTACGGCC          TTTTCAGTACTTAAC  58 82
JA116_RS19595 4093752 .. 4093781 - -10.8  -3.16154   TAACACCACACTCAA       TAAAGCCCCTGT GATTTT ACCGGGGCTTTA        CAACAATATCTGTCA  79 38
        argC NONE
        argB 4087349 .. 4087363 -  -2.8  -3.30159   CCAATGTGCTGATAA               TCCG GATTACG CGGA               AATCCGCGTGCCGAT  46 17
JA116_RS19565 NONE
        argH 4084554 .. 4084587 - -15.4  -4.71223   TGACAATACATAAAA     CCCCGGATCACG GGAAACAGAA CGTGATCCGGGG      ACAATGCATTATGTT 100 39
JA116_RS19550 4083305 .. 4083323 - -12.4  -3.52906   TGATCCTGATAAAGA             CGGGCTGC CCG GCAGCCCA             CTCTGTTATTTTGTA 100 49
JA116_RS19545 4081997 .. 4082008 -    -3  -2.87377   ATAGATAAAATCAAT                TGAT AACT ATCA                 TAACGCAACTGCATT  43 91
        oxyR 4080943 .. 4080987 -  -3.6  -4.22009   ATTATGGAACAGAAA GGTGAAGGTAATACCATCGA TTATT TCGTCAATACCACCTTCAAC TACCCGACCATGGCC  62 85
        fabR NONE
JA116_RS19525 4078344 .. 4078365 - -10.9  -5.72616   ACGGATACAAAAAAA           CCGGTCACT TCAG AGTAACCGG            TTTTTTCATATTCTT 100 51
        murI 4070255 .. 4070265 -  -2.6  -2.95204   TGATGCTCAAAGAAT                 TAAA CTG TTTA                 CTGCTGCTTATTTCT  43 369
JA116_RS19480 NONE
JA116_RS19475 4068512 .. 4068523 -  -2.2   -3.6682   GTTTACTGACGTAAA                CGAGC GGA GC-CG                CAACGCAGTATCAGT  49 47
JA116_RS19470 4068288 .. 4068325 -  -9.3  -3.56837   TGTTAAAGAGCATAA   TAATTCACAGCATACCG TTTC CGGTAAACTCTGAATTA    TTGTTCAGATATCAG  76 45
JA116_RS19465 4065108 .. 4065118 -  -6.8  -4.27316   TCTCTCAACTCAAAA                 CACC TTC GGTG                 TTGTCAGGTTAAGCC  74 30
         rrf 4064866 .. 4064883 -  -7.7  -4.79223   CCATATCAGCAAAAA             TCTGCGC TTTT GCACAGA              CTTTAAATAATAACC  91 38
JA116_RS19455 NONE
         rrf 4064602 .. 4064619 - -11.3  -5.24449   GAGAAATGCAAAAAA             GCCACTC AGAT GAGTGGC              TTTCTTTAAATATAA 100 42
        murB NONE
        birA 4062473 .. 4062494 - -13.1  -4.56597   TTTTTCTGTTAAAAA           TAAACCGGC TCAG GCCGGTTTA            TTTTTTGAATCCACA 100 13
JA116_RS19430 4061048 .. 4061061 -  -6.7  -3.63968   TTCCAAATTGTTAAA               TGGTG CCGG CACCA                AGAGTCGAACTCGGG  65 12
JA116_RS19425 4060908 .. 4060923 -  -3.3  -2.77182   TTTTACATCGAAGGA              GTGTT GAGTAA AACAC               CAAGGATAATAATTC  43 49
JA116_RS19420 4060753 .. 4060763 -  -3.2  -2.56596   CGCTCTACCAACTGA                 GCTA TAT CAGC                 ACATCTTGGAGCGGG  42 32
JA116_RS19415 4060624 .. 4060639 -  -7.6  -2.57468   TTTCACCACATCAAC              CAAGCA GTGT TGCTTG               TCTGGATATTTACAG  60 74
         tuf 4059356 .. 4059371 -    -9  -5.76633   GCAGACATAAAAAAA              GAGAGC CGGA GCTCTC               TTTTTCATAATCAGC 100 47
         bfd 4058991 .. 4059001 -  -5.4  -4.55209   GACACAGGAAATAAA                 TCAC GGA GTGA                 TTACAGTGACAAAAT  70 84
         bfr 4058397 .. 4058421 -   -10  -5.86976   TCAGAAAAGAAAAAA         CCGCC-GC-GGG TTT CCCTGCCGGCGG         TTATGCACATTGCTT 100 64
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW 4056201 .. 4056212 -    -3  -3.12668   TAGGTTTACATTTAA                CAAT TGCC ATTG                 TTCTTTACTCCTCCG  46 43
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 4053108 .. 4053134 -   -11  -5.72616   ATGGATAGAAAAAAA         TAAACGGCTC TAAAGCC GAGCCGTTTA         TTCTACATCAGAAAG 100 49
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN 4051403 .. 4051417 -  -2.8  -3.08679   TCCCGTGATTCAATA               TGGTGA CAA TTACCA               GCTAGCTTTCTTAAG  44 20
        rpsH 4050988 .. 4050999 -  -4.4  -2.70932   TTTCCTCCCGAATTA                TGCT ACGT AGCA                 GAGAATCTCGCCACC  45 11
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 4047388 .. 4047417 - -14.5  -4.84359   CCACGTTTATAAAAA       GATTG-GCTGGCTA ATT TAGCCAGCTCAATC       CAACTTTGCAAGAAA 100 54
        rpsM NONE
        rpsK NONE
        rpsD NONE
        rpoA NONE
        rplQ 4044406 .. 4044422 - -12.3  -6.02919   GCAGAAATAAAAAAA              CCGGGTT AAA AACCCGG              TTTTTTTACGCAGTA 100 46
        zntR NONE
JA116_RS19250 4043208 .. 4043220 -  -4.9  -2.70268   GGGTAAGGAAAAAGG                TATGA GCT TCATA                AAAGAGTTTCGTGAA  46 426
        dprA NONE
JA116_RS19215 NONE
        tsaC NONE
        aroE NONE
JA116_RS19200 4034867 .. 4034881 -  -4.3  -3.33744   TCTGCCGGCAAAAAC               GTCAT GATCG ATGAC               TCTTCTGTCATTATC  51 478
JA116_RS19190 4032709 .. 4032725 -  -2.1  -2.92157   GACGAAGGGGACATA              TGTCAGC TTC GCAGACG              CTCTCTGCTCATTTT  42 86
JA116_RS19185 4032562 .. 4032592 -  -7.1   -2.7362   GTTAAAGAGCATAAT      TG-TTAAGCTGACT CTTG AATCAGCTTAATCA       TTATTTGCAGATGAC  59 61
JA116_RS19180 4029387 .. 4029397 -  -6.8  -4.27316   TCTCTCAACTCAAAA                 CACC TTC GGTG                 TTGTCAGGTTAAGCC  74 30
         rrf 4029118 .. 4029128 -  -2.4  -2.80398   TAACCAACTGAACTA                 CCGC TCC GCGT                 ATCTCTGTGTGACTG  41 72
JA116_RS19170 NONE
JA116_RS19165 4028902 .. 4028922 -  -9.7  -5.60689   TCAGACAATAAAAAA            CCCAGTTCA TAA CGAACCGGG            CTATTAATAAATAAA 100 69
JA116_RS19155 4027470 .. 4027485 - -10.4  -3.92659   TCCTGAAAAGCGAAA              GGGGCA CGAA TGCCCC               TTTTAACTTATTATT  89 51
        ilvL 4025297 .. 4025316 - -10.6  -6.10489   AAGGCTAAAAAAAAA            CCCGCGCC TTTC GGTGCGGG             GTTCTCGTGAGATCC 100 50
        ilvG NONE
        ilvM NONE
        ilvE 4022332 .. 4022353 -   -13  -3.33744   CGTGTTTGCAAAAAT           CAGGCGGG GAACGA CCCGCCTG            TAAATCTGTTTCGTT 100 42
        ilvD NONE
        ilvA 4018848 .. 4018864 -  -9.4  -3.70773   CTGCACACTGAACAA              GCGGCT GCATG AGCCGC              TGATCAGAGCATTCT  73 46
        ilvC 4016174 .. 4016191 - -12.7  -6.02546   TGAAATTAAAAAAAA             CGGCACC CGAA GGTGCCG              TGGGATAATATCATT 100 50
JA116_RS19105 4015583 .. 4015595 -  -6.2  -4.30576   CCGCTATGATTAAAA                CGGG TGCTG CCCG                CTGATACTGTAACCG  72 7
         rep 4012123 .. 4012156 -  -2.5  -3.92996   GCTGACAGATAATAA     GCCCTGATTAT CAGTTTTCGGAC ATTATCAGGGC      TTTAATTTTATGAGC  54 97
        trxA 4008434 .. 4008453 -  -8.6  -3.42069   TGAACGTGAATAATA            CGGTAACG TTAT CGTTACCA             GGTTAATTTTTTACA  71 426
         rho 4007077 .. 4007095 -  -8.1  -6.34424   CCGGTAAAAAAAAAA             CGCCACA ATATA TGCGGCG             TCAGTCATAAAGTGT 100 51
        wecA NONE
        wzzE 4004718 .. 4004743 -  -9.6  -4.08216   TTACCCGCCTTAAAA         CAGGCCGGGA ACAGCG CCCCGGCCGG          TTATTCTGCCGCTGC  85 44
        wecB NONE
        wecC NONE
        rffG NONE
        rfbA NONE
        rffC NONE
        rffA NONE
        wzxE NONE
JA116_RS19025 NONE
        wzyE NONE
        rffM 3994000 .. 3994016 -  -2.2  -4.56775   ATTTCCCCGCAAAAA             GCCGCCC GGAC AGG-GGC              AATTATAATTTATTA  60 28
JA116_RS19010 3993796 .. 3993809 -  -2.3  -3.39327   CTCTTACACGCATAA               TGGCG CGCC CGACA                GGATTCGAACCTGAG  45 12
JA116_RS19005 NONE
JA116_RS19000 NONE
JA116_RS18995 3993394 .. 3993426 - -17.1  -3.95219   CGGAAACCGCAGAAA      CGAAAAAGCCCCGCT GTA AGCGGGGCTTTCTCT      GAATATGGTCGGCGA 100 31
JA116_RS18970 3985087 .. 3985104 -  -9.1  -2.62184   TGCCGTCGCATATCA             GCCG-CGG TGC CCGGCGGC             CTGATACTGTAACGG  66 5
JA116_RS18960 3984242 .. 3984253 -  -2.2  -4.19258   ATACGGTAGTGAAAA                TCCA GTTC CGGA                 TCATAAGGCGCTTCC  55 228
JA116_RS18950 NONE
        xerC NONE
        yigB 3981175 .. 3981198 -  -8.2  -2.95994   CGAAAGAAAAAGCGA          CTTCCGGA CAGCCGGT TCCGGAAG           AACTGGTTTTTTATA  65 50
        uvrD 3978919 .. 3978951 -  -9.9   -4.8048   TGCGCAGATGAAAAA      GGGTGTCAACCGG TTATTCT CCGGTTAACACCT      TACTCTGCGGAAGAT 100 40
        corA 3977676 .. 3977688 -  -3.3  -4.89567   TGGCAAAATACAAAA                CCGCC CTC GGCAA                AGCTCAGGCACGGCT  74 240
        recQ NONE
        pldB 3973195 .. 3973209 -    -5   -2.6296   TAAATCTGAAGCAAC               CACATG ATA CATATG               CAAATTCCTGAAAAT  48 44
        yigL 3972353 .. 3972377 -    -7  -5.95539   TCTGAAAGAAAAAAA          CCGCTGGAAG AATAA CATCCGGCGG          CTTTCTGTTGATCTG 100 51
         orn 3964679 .. 3964689 -  -6.8  -3.79419   TTCTGCTATAAAATA                 CGCA ACC TGCG                 TTAATATTAACCTGT  67 71
JA116_RS18870 3964417 .. 3964431 -  -4.2  -3.40522   ATTCCCGCATCACAA               CCGGTA TAT TACCTG               ACAAACTGAAAATTG  51 39
JA116_RS18865 3964307 .. 3964320 -  -2.3  -3.28791   ATTCCCGCGTCACAA               CCGGT ATAT ACCTG                ACAATCTGAAAATTG  45 39
JA116_RS18860 3963936 .. 3963948 -  -7.7  -3.62046   TCACTGTCTGAATAA                TCACC GCT GGTGA                TCGTTCATCTGCCCC  70 301
        tsaE NONE
JA116_RS18845 NONE
        mutL NONE
        miaA 3957483 .. 3957493 -  -6.8  -4.05788   GTTTTTTAAATGAAA                 CCCA AAC TGGG                 TTCGAAAAATAACTA  69 84
         hfq 3957073 .. 3957119 - -11.9  -3.94812   GCTGAGTGAAAAACA CGCAGGAAAAAACACAGGTAAAG TCT CCCTACCTATGT-TTTTCC-GCG ATTGATAACTGCACA 100 46
        hflX 3955718 .. 3955731 -  -2.3  -3.04144   TTTTCAGGGCTAAGA               GCACA AAAA CGCGC                TCTCAATCAATATAT  42 55
        hflK NONE
        hflC 3953293 .. 3953316 - -13.2  -3.31461   GATCTATGTCCATAA          TAAAGCCCGC CTAA GCGGGCTCTA           TTCATCAGAGTGCGA 100 90
JA116_RS18810 3951846 .. 3951865 - -11.4  -5.54907   GTCAGAAAACAAAAA            GCCGGACA AACA TGCCCGGC             CCTGACTGGTATCAA 100 51
        nsrR NONE
         rnr 3948741 .. 3948770 - -15.1  -3.78934   GTTGCGGGACAATAA       GCGTAATGAGGCG TTAC CGCCTCATTACGG        GAAGATATAAACCAA 100 47
        rlmB NONE
        rpsF NONE
        priB NONE
        rpsR 3946863 .. 3946889 -    -3  -2.72511   CTTATCCTCTTAAAG         TCATTAATGGAC TGT GCCGATTACTGA         TGACGATCAGTGTAA  42 19
        rplI 3946345 .. 3946362 - -12.7  -5.71712   TGTCACATAAAAAAA             CGCTGGC CTGA GCCAGCG              TCTTTCAAAGATGTT 100 58
JA116_RS18765 3944821 .. 3944840 - -13.6  -5.42975   GTATAGAAATAAAAA            TGGCCGGT GAAA ACCGGCCA             TTTCGCATATTCTGT 100 61
        cysQ 3943939 .. 3943976 - -11.5  -4.42386   TCCGGACGGAGAAAA   GCCAGTGTAATTTGCAT AACC ATGCAAATTACACTGTT    ATTCAGGAATAAAAT 100 46
JA116_RS18755 3943303 .. 3943319 - -10.9  -2.60904   CGATAACTACAAGAT              TGACCAG CTG CTGGTCA              CACGTATTGCGGATA  69 165
JA116_RS18740 NONE
JA116_RS18735 NONE
JA116_RS18730 3935100 .. 3935117 - -11.3  -6.06529   CAGAGACAAAAAAAA             CCGCTGT TTTC ACAGCGG              TTTTTTTATTCACAG 100 46
         mpl 3931834 .. 3931859 - -16.1  -5.04175   TTAATCATACAAAAA         CCGCGCGGTAC TGAT GTCCCGCGCGG          TTTTTTTTCTTAGTT 100 77
         mdh 3929883 .. 3929918 - -13.6  -4.90455   ATATAGTTATAAAAA    CAATAAAACCGCTAAT CATA ATTAGCGGTTTTATTT     ACGGCTCAAAAAAAT 100 61
JA116_RS18695 3928603 .. 3928622 - -12.2  -5.43414   ATCACAGAGAAAAAA            CGGGATCT GTAA AGATCCCG             TTTTTTTATTCCGGT 100 31
        rplU NONE
        rpmA 3926717 .. 3926739 - -16.4  -4.99035   TTACGCATATAAAAA           GCCCTGCAAA AGG TTTGCAGGGC           TTTCGGACTCGGTTA 100 54
        cgtA 3925420 .. 3925447 - -16.4  -5.64274   TCATCCATAAAAAAA        CCCGATAGTCGG GTAA CCAACTATCGGG         TTTTTATTCAGAACT 100 48
JA116_RS18670 NONE
JA116_RS18665 3923413 .. 3923426 -  -3.9  -3.17763   TGGACATTTGATTAA               CTTTA AAGT TAAAG                TTGAAATCAGAACGT  48 464
        greA 3920744 .. 3920788 - -14.4  -5.65177   ATATTTATAAAAAAA TGCCACCGG-CAGATGATTTC TGAT GATATCGTCCGGCCGGTGGCA TTCCTTTCAGATTTT 100 158
        rlmE 3919630 .. 3919640 -  -3.2  -3.11738   GTGTTAACAAATAAC                 GCAC AGG GTAC                 TACACTTTCCACCCT  46 25
        ftsH 3917584 .. 3917604 - -14.7  -5.82281   AAAGATATAAAAAAA            CCCGGCAGA TTT TCCGCCGGG            TTTTTCATATTACTG 100 63
        folP NONE
        glmM 3915193 .. 3915204 -  -3.6  -4.58308   TACTAACCAAACAAA                CGCG GACA CGCA                 AGTCTATTTTAAGCC  67 147
        secG 3914744 .. 3914761 -  -4.1  -2.78371   CAGACTTGCAACAAT             CAGCG CGGAATAT CGCTG              TTAGGAGCTGCTGGT  46 7
JA116_RS18620 3914523 .. 3914538 -  -2.6  -3.53091   ATCCCGCGTTCGAAA              CGT-GAA AAA TTCTACG              CTGATCACCTGCAAA  48 60
JA116_RS18615 3914308 .. 3914323 - -10.4  -5.56673   ACTGATAACAAAAAA              CCCCGA AATT TCGGGG               CTTTATGCAACTGGA 100 141
        rimP NONE
        nusA NONE
        infB 3909468 .. 3909490 - -13.4  -3.04398   TTCTCTCCTGAAAAT           TCGGGGGGCC ATA AGCCCCCCAA           TTATATCATGTTATG 100 57
        rbfA NONE
        truB NONE
        rpsO 3907662 .. 3907686 - -16.5  -3.35996   CAGCCGCATTCAGAA          GAAAAGGGGCC GTC GGCCCCTTTCC          ACTGAAACTTGTCTG 100 43
         pnp NONE
        nlpI 3904256 .. 3904283 -  -4.8  -5.28166   TAAAACGAACAAAAA        TCCCCCCATCAC TTCC GCGATGGTGAAA         AATTAACGGGTTGAA  82 54
JA116_RS18565 3902156 .. 3902182 - -17.2  -5.61596   AGGCGTATAAAAAAA         GCCCGGCAGGGA TAT CCCCGGCCGGGC         TTTTTATGATTCAGA 100 48
JA116_RS18550 NONE
JA116_RS18545 NONE
JA116_RS18540 3896113 .. 3896131 - -10.3  -5.41143   TACCGGCCAAAAAAA             TCCCGTG ACAGG CACGGGA             TTTCATTTATTTTAG 100 37
JA116_RS18535 3894968 .. 3894986 -  -8.8  -2.62616   CCACCTCCCATATTA             TGGCCGGA ACT TCCGGCTA             CAGTATTACCGATGA  59 47
JA116_RS18525 3893414 .. 3893436 - -14.8  -3.84523   AGTAACAGAACAGAA           CGGGCGCGAT ATA AGCGCGCCCG           TTATCCGGCTTTATT 100 36
JA116_RS18505 NONE
JA116_RS18500 3889700 .. 3889726 - -13.8  -5.74288   ACAAAGAAGAAAAAA         GAAAAGCTGGTC AGT GACCAGCCTTCC         GATTTGACGACATAC 100 55
JA116_RS18490 3888846 .. 3888881 - -11.3  -4.64676   GTACCCCCAATAAAA    CCA-CACCGGCTGATA GAGTA TATCATCCGGTGCTGG    TTCAGACAGTCCCGT 100 75
JA116_RS18485 3888028 .. 3888071 -  -6.6  -3.28712   CCGCGGCTGTTATAA CCAGAGCACATGGCGCA-CGG ATT CCGGTGTGCCGTATACCCGGG AGCTGGAAGATAAAA  59 326
JA116_RS18465 3883293 .. 3883306 -  -8.1  -2.82519   TTAGTAGAGCAATCA               GCAGC AGCG GCTGC                ATCACTTGAAGTGCA  61 270
        rraB 3877640 .. 3877653 -  -8.1  -5.71712   GCGGACACAAAAAAA               CCTGC CGCG GCAGG                TTTTTCAGTCATGGC 100 47
        lptF 3868617 .. 3868632 -  -4.7  -3.39732   CAAGTACTTTAAACA              TCAGG CAACCC CCTGA               ACACGGGCAGAGCCA  53 10
        lptG 3867476 .. 3867512 - -16.8  -3.53224   TACCGGCCGCTGAAA   TGACAGAGCCGGTCAGC ATTC ACTGACCGGCTCTGT-A    TACCGGGATCTGTTT 100 48
JA116_RS18375 NONE
JA116_RS18370 3863621 .. 3863651 - -17.7   -3.1247   ATCTGTGATACTTAA       GAACATGCCCGCA TCAGG CGCGGGCATGTTC       TGTATATGAAGTGTC 100 8
JA116_RS18360 3861879 .. 3861894 -  -6.8  -5.64274   TCAGGCACAAAAAAA              GCCACC TTGC GGTAGC               TTGATTTCACTTAAG 100 43
JA116_RS18350 3859099 .. 3859132 -  -7.6  -3.14683   ATATTTTTCTATTAA     CTATCTGATGATAA TTGCTG TTCTCACCAGATAG      TCAATACGTTTCATC  63 89
JA116_RS18285 3845712 .. 3845739 - -15.6  -2.75865   CCGTAAAATAATTTA        CCGGCGGTATCC GGCC GGATACCGCCGT         TTTTCCGGGATAACT 100 40
JA116_RS18275 NONE
JA116_RS18270 3841199 .. 3841235 - -15.3  -5.60993   CCGGCGATAAAAAAA    CAGAAGCCCGGCA ACGTTATTTTG TGCCGGGCTTCTG    CGCTGTTTTTTCTGA 100 52
JA116_RS18265 NONE
JA116_RS18260 3840101 .. 3840115 -    -5   -3.2496   TAAGCCATAATTTAA               TTCCTG TAA CAAGAA               TGAACTATCAGGATT  53 33
JA116_RS18255 NONE
JA116_RS18250 NONE
         fba 3836706 .. 3836741 - -14.8  -3.07113   GATTACCTGACCCAA    TCCC-CGGTGACCGCCT GAA AGGCGGCCACCACAGGA    TCTGACTGTTCAGAG 100 35
JA116_RS18200 NONE
JA116_RS18195 3826710 .. 3826727 -  -4.1  -3.54475   CCTCTGATCAGATAA             CGCCACTC CAT GAG-AGCG             TCAGTTGGCCGATAA  52 0
JA116_RS18190 3825328 .. 3825343 - -11.8  -5.82281   AAAGAGATAAAAAAA              GGCCCG TTTC CGGGCC               TTCAGGGGGATGATC 100 39
JA116_RS18185 3824332 .. 3824346 -  -7.1  -4.59109   GATATCCGCTAAAAA               GACCC TCTGC GGGTC               TTTTTTAGTCTTCTT  81 30
JA116_RS18175 NONE
JA116_RS18165 3820255 .. 3820273 -   -16  -4.32034   TCATCATTATGAAAA             TGCCCGGC ACA GCCGGGCA             TTTTTTGACTTATTT 100 35
JA116_RS18145 3816205 .. 3816239 - -13.9   -3.0682   TTTATCAGACAGATA    CA-AAAAAAAGCGCCT TTGA AGGCGCTTTTTTTATG     TCCGCAGTTTTTTCA 100 21
        narX 3804521 .. 3804535 -  -2.8  -2.65476   ATCACTGAGTATAAT               CTCTCC GGC AGAAAG               TATTCTGTTCGTCAT  41 44
        narL NONE
JA116_RS18105 3803019 .. 3803044 - -13.3  -5.31519   ACAGTTAAATAAAAA         CACCGGCCTGT CGGA AGAGGCCGGTG          TAATACAGATGAAAT 100 47
JA116_RS18100 3801921 .. 3801931 -  -5.4  -3.76186   TATTTATAAAATTAA                 CTCT TAC AGAG                 AGAAATTACAGGTTT  61 180
JA116_RS18095 3801324 .. 3801346 -  -4.1   -4.7153   AAATAACTGCAAAAA           GAGCAACAG ATATG CCGTTACCC           TCTTTGTTTTTGAGT  68 98
JA116_RS18090 3794754 .. 3794792 - -14.1  -3.61001   CCTTATAAAAACAGA  GCTGAATTGCCGGTA-CA ATAT TGATACCGGCAATTCAGT   AACGGATTAATTGGT 100 32
JA116_RS18085 3793430 .. 3793441 -    -3  -4.41047   ATTTGTTAACCAAAA                TTCA AACC TGAA                 ACACCGTGAATTACT  61 346
JA116_RS18080 3782919 .. 3782948 - -11.5  -4.80453   TTATCACAAAATAAA       GAAGCCACAGACA TTTC TGCCTGTGGCTTT        TATTATTGTTACTGA 100 60
JA116_RS18075 3781374 .. 3781392 -  -8.8  -3.61654   CAGATCCATCGGAAA             CGGCATAC CCC GTCTGCCG             GATAAAAAACGATTC  75 365
JA116_RS20545 NONE
JA116_RS18065 3780730 .. 3780749 -    -5  -4.01088   CATATGAAAATACAA            TTCCCTCC CGGA AGAGAGAA             TAACTATCAGTACGC  61 100
JA116_RS18060 NONE
JA116_RS18055 3779768 .. 3779788 -  -5.4  -5.73978   ATCATAAACAAAAAA            GGCTTGCA GTCAA CACAAGCC            TTTTTAATATCCGTT  91 46
JA116_RS18045 NONE
        yidZ 3776722 .. 3776741 - -13.6  -3.64703   GTTGTTGTACCCAAA            GGCATCCG GGGG CGGATGCC             TTTTTTTATTTCCCG 100 31
        potA NONE
        potB NONE
        potC 3771278 .. 3771305 -   -12   -4.7878   TATTCACAAAATAAA        CCGGCG-GGCC GCTGTAA GGCCGCGCCGG        TAACAGAAAGGTTAC 100 37
        potD 3770021 .. 3770036 -    -9  -5.64274   GCAGGCATAAAAAAA              GCACCT CTGA AGGTGC               TTTTTATTGATACGT 100 45
JA116_RS18005 3767974 .. 3767985 -  -7.2  -3.73302   GAACAGATGTAACAA                CCGG AAAG CCGG                 AAATCATACATAATA  66 456
JA116_RS17970 NONE
        sctC NONE
        sctW 3760403 .. 3760425 -  -7.6  -3.97368   CCGTCAAGGGAGAAA           CGTGCCGCCA CCT CGGCCACACG           CTCCGAACCTTTGGT  74 449
JA116_RS17950 NONE
        sctN NONE
JA116_RS17940 3756594 .. 3756604 -  -8.2  -4.95806   AAATTATCACAAAAA                 CCGG ATG CCGG                 TTTACTGCAATAAGA 100 85
JA116_RS17935 NONE
JA116_RS17930 3754128 .. 3754141 -  -3.9  -3.86015   TATCCGCCGCATAAA               TAACA TCCA TGTTA                AATATCCATAAGTTC  56 23
        sctS NONE
        sctT 3752885 .. 3752904 -  -4.4  -6.09133   CATCTGAAAAAAAAA            TATCCG-AT AAC ATCCGGATA            TACACCGGGAGAGAC 100 224
JA116_RS17910 NONE
JA116_RS17905 NONE
JA116_RS17900 NONE
JA116_RS17895 NONE
        sctE NONE
JA116_RS17885 3747562 .. 3747579 -  -8.4  -5.88476   AAAATAAAGAAAAAA             GCCGCT GTCGGA AGCGGC              TTTGATTCATGGAAG 100 51
JA116_RS17880 NONE
JA116_RS17875 3744879 .. 3744918 - -16.4  -3.19018   AAGACGGCAAGTGAA  GGGGCACGGGGAGCATAC ACCA GTATGTGACCCGTGCCCC   TGAGTGCGGCCAACG 100 389
JA116_RS17870 3744110 .. 3744131 - -11.7   -4.6955   GATTAATACAGAAAA           GGGATAACT GAAC AGTTATCCC            TTTTTATTTATTTGA 100 33
        soxR NONE
JA116_RS17850 3738148 .. 3738167 -   -10   -2.8547   AGGCGTCAGATCACA            CTCCCGGCG GTT CGC-GGGAG            ACACTGTTGCGTTCC  72 1
JA116_RS17845 3737138 .. 3737159 - -10.2  -5.61881   TGTTAAAAATAAAAA           CAGGCTGA GTAATA TCAGCCTG            TTTTTATATTGAAGG 100 69
JA116_RS17840 NONE
JA116_RS17835 3734367 .. 3734386 - -16.4  -5.28778   ATTATGCATAAAAAA            CGCCCCCG TTAC CGGGGGCG             CTGTCTGTTTTATAT 100 71
JA116_RS17830 3733788 .. 3733829 - -16.1   -2.6914   GATGCCGCATACAAT GCCGCATACAATCCCGCATA AAT TATGCGGGATTGT-TACCGC TTACGGCGAAGGCAG 100 26
        gntR 3725985 .. 3726020 -    -4  -4.29106   TTTCAGATGAATAAA    TTGTGACAGTTATCTC AAAC GAAATTCCTGTCACAT     CAGGAGGGGCCGGGA  63 45
        gntK NONE
        gntU 3723946 .. 3723972 - -14.5  -5.28176   GGGAGTGATAAAAAA         GGCAGCGGATC TTATC AATCCGCTGCC         TGAGAATGAAAATGC 100 46
JA116_RS17780 3722281 .. 3722321 - -11.8  -4.61482   GGCTGCAAAAAATAA CCGCCCGGCATCTCCG-CA TTAT TGTCGGTGATGCCGCGGGG  GTGGATTCAGCCGTT 100 466
JA116_RS17750 3717005 .. 3717022 -  -9.9  -4.35461   GTAATATTATCAAAA             GCACTGT TTTT ACAGTGC              TTTTTTGTTTTTTGA  93 53
JA116_RS20535 3709680 .. 3709696 -  -2.1  -4.05033   TTCACCGGATACAAA              TCCGGCG TTA CGCTGTA              CGGAATTTTCAGGCG  53 34
JA116_RS20530 3709079 .. 3709094 -    -9  -3.40403   TCCTGGTTATGAGAA              GAGTGC CACC GCACTC               TATAACGCACTGGAA  71 106
JA116_RS17675 3697564 .. 3697585 -  -4.4  -3.67597   CCGTTTACTGAAGAA           TGCCGG CTATCTTCCC CCGGCA            TTACTGGCCCGGCAG  55 233
JA116_RS20520 3694654 .. 3694675 -  -5.1  -3.17051   TGTTCAGCAGCAATA           CCTTTCTGC CCCA GCAGCAAAG            ATGCGCCTTTAGCGT  53 68
JA116_RS20515 NONE
JA116_RS20510 3688850 .. 3688873 - -16.8  -6.24157   ATTGATAAAAAAAAA          TCCCCCTGTG GCAA CACAGGGGGA           TTTTTATCTCAGCGG 100 47
JA116_RS17655 3685588 .. 3685600 -  -3.3  -3.46709   ATAAAACGGGAAATA                CGGTG TTT CATCG                GACTTTTTCCAGTTC  49 20
JA116_RS17650 NONE
JA116_RS17645 3682299 .. 3682323 -   -13  -5.88476   AAAATAAAGAAAAAA          GCCGGTTTAT TTTTC ATAAACCGGC          TTACGGAAGACAATG 100 57
JA116_RS17640 3680759 .. 3680774 - -10.4  -5.76633   TCAGATATAAAAAAA              GGAGGC TTTC GCCTCC               TTCTTCATTATACGC 100 54
JA116_RS17625 3677461 .. 3677488 - -13.6  -3.19837   CACACAACTGAAAAG        CGATACAGTTCA TCCC TGAACTGTACCG         GCATTAATTACTGAT 100 33
JA116_RS17620 NONE
JA116_RS17615 NONE
JA116_RS17610 NONE
JA116_RS17605 NONE
JA116_RS17600 NONE
JA116_RS17595 NONE
JA116_RS17590 NONE
JA116_RS17585 NONE
JA116_RS17580 3669702 .. 3669717 -  -6.2  -4.02534   ACTGAAATGTATAAA              TTTACC GGGT GGTAAA               AATTGATTTGGCGGA  67 319
JA116_RS17575 NONE
JA116_RS17570 NONE
JA116_RS17565 NONE
JA116_RS17560 NONE
JA116_RS17555 NONE
JA116_RS17550 3664059 .. 3664069 -  -5.4  -2.93853   CCCGGCTAATTAAAG                 CTCA TAA TGAG                 TGCGGCATGAGAATA  52 5
JA116_RS17545 NONE
JA116_RS20505 NONE
JA116_RS20500 3662338 .. 3662356 -  -4.5  -3.53012   TTTCTTTCCCGCAAA             GGCGG CCGTTTATC CCGCC             AGCAGATATTCCGTA  53 241
JA116_RS17530 3661237 .. 3661286 - -10.2  -3.48593   GATTTTCTGACATAA GATTGCTGACAAAATCCCGG CCTGTTTTTT CCCGGACTTTGCCAACAATC TGAGGCTCCGCCATA  80 59
        nikA 3658904 .. 3658918 -  -3.4  -3.38435   CGCCGGAAAATAAAT               CGCATC ATA GTCGCG               GGCCTGTCACTTGGC  47 32
        nikB 3657977 .. 3657990 -  -4.5  -3.08798   ATCGCTCATTCAATA               CCCTC CGCA GAGAG                GCGGATACGGGGGTC  51 2
        nikC NONE
        nikD NONE
        nikE 3655482 .. 3655504 -  -7.6  -4.41797   AAAATGAGAGTAAAA           GCGCCCTGCT GAT ATCACGGCGC           TTTTTTCTGTACTAT  82 43
JA116_RS17485 3650289 .. 3650319 - -18.5  -5.36441   GCCGGACACAAAAAA       GCCGTGATAACAG AATCG CTGTTATCACGGC       CGGAAATCTTATTTA 100 44
JA116_RS17470 3644584 .. 3644599 -    -4  -3.28791   AGTGTTTGTTCATAA              TCTCAG TTCC CTGAAA               ATCGGGTAATCATCC  51 53
JA116_RS17465 NONE
JA116_RS17460 3636105 .. 3636154 -  -7.9  -2.83409   TAGGAAGCCACTATA CCCTCACTC-GCCAAGCCGGACA GTTGAT TATCCGGC-TGGCTGAGGGGGAG TGAGACTATTTCGAT  61 42
JA116_RS17455 NONE
JA116_RS17450 3634369 .. 3634383 -  -2.1  -4.07885   GATCTCCTCCCAAAA               TCAGC GCCAG GCTAA               ATCAGAGATCCTGAC  55 27
JA116_RS20495 NONE
JA116_RS17440 3633002 .. 3633032 -  -8.6  -3.95787   TATTATATTTATAAA       TAACTATATGAT TTCATCT ATCATATAGTTA       TCCGTAGCCAATATA  77 60
JA116_RS17435 3632191 .. 3632213 -  -4.9  -4.50686   TTAAAAATGAAGAAA           CCAGAATAT TAAGG ATCTTCTGG           CTATGAACTAAAATG  68 33
JA116_RS17430 3630842 .. 3630877 - -12.6  -3.05463   ATCCCTGTCAGTCAA    CACGGGGATGTCTCCC GGCA GGAAAAAATCCCCGCG     CGGGTTAATAAAAGG  93 114
JA116_RS17425 3629768 .. 3629791 - -15.4  -2.79183   CTGAGTGTTATGATA          TCAGCGACAG GTTT CTGTCGCTGA           GGTCAGATATTCAAA 100 117
JA116_RS17420 3628344 .. 3628358 -  -7.8  -4.62441   TGCGACATAAATAAA               GACGAG ATA CCCGTC               TTATGTCACCGGTAA  86 225
JA116_RS17415 NONE
JA116_RS17410 3626521 .. 3626542 -  -8.8  -5.41746   AAGCTCTCAAAAAAA           CAGACTTG TTCGCG CAAGTCTG            TTTTTTTATGCGTGC 100 101
JA116_RS17385 NONE
JA116_RS17380 3621137 .. 3621147 -    -4  -3.64703   CCTTTCGGACCTAAA                 GTAA CTT TTAC                 TGCGTCTGCCAGAAC  54 168
JA116_RS20490 NONE
JA116_RS20485 3618505 .. 3618516 -  -4.4  -2.91144   TCAGGTCTTAAATTA                TGAC CCGG GTCA                 CTTTAAGGCGATAAT  47 180
JA116_RS17365 NONE
JA116_RS17360 3615400 .. 3615428 - -13.2  -5.66684   TAATGCATAAAAAAA       CCGGCAC-CTGAG TTTC CTCAGAGCGCCGG        TTTATTTTTTCCTGT 100 55
JA116_RS17355 3614753 .. 3614774 -  -3.7  -5.80364   ATCTGAATAAAAAAA           CCACCAT TTATATCG ACGGTGG            TTTTTTTGTATCTGA  91 174
         efp 3612032 .. 3612052 - -18.3  -5.95946   TGAATAACAAAAAAA            CCGCCGCTG AAT CAGCGGCGG            TTTTGTAATTCATCA 100 48
JA116_RS17330 NONE
        hyfB NONE
JA116_RS17320 NONE
JA116_RS17315 3604982 .. 3604994 -  -2.6  -2.52464   CTCTCCCTTAACCGA                GCCA GATGA CGGC                GATAACACTTGAACA  41 5
        hyfE NONE
JA116_RS17305 NONE
JA116_RS17300 NONE
        hyfH NONE
JA116_RS17290 NONE
JA116_RS17285 NONE
        hycI 3598685 .. 3598704 -  -9.2  -5.64274   TTATCCATAAAAAAA            CCGCCGGA TTTC TGCGGCGG             TTTCTGTGATAGTCA 100 52
JA116_RS17265 3596438 .. 3596457 - -10.8  -4.66609   GACTTCATGTAAAAA            TACCGCAA TAAT TTGCGGTA             TTTTTTTATGTATCA 100 38
JA116_RS17245 NONE
JA116_RS17240 3591324 .. 3591353 - -12.1   -3.9644   GTCTGAAGAGAATAA       CGGTCAGTCCGCC TGCG GGCGGACTGACTT        GTGACGTTACAGTGT 100 32
        fdhF 3587680 .. 3587724 - -13.2   -4.9251   AACAAAAAATGAAAA TATAA-AAAAACCGGCGGTCA TTTC TGAGCGCCGGTTTTTATCATA TTATAACAGACGGAT 100 43
        hydN NONE
        hypA NONE
        hybG 3584179 .. 3584196 -  -9.9  -3.62176   AATAACAGCGTTAAA             CACCTGT CAGA ACAGGTG              TTTTTATCCGGAGAC  80 55
JA116_RS17205 3582478 .. 3582502 - -12.9  -4.82901   TGTCCGTTACAAAAA          GACCGGCTC CTGAAGT GAGCCGGTC          TTTTTTTATCTGCTG 100 41
        glpA NONE
        glpB NONE
        glpC 3574398 .. 3574411 -  -9.5  -5.71712   CTGTATATAAAAAAA               CCGGC CGGA GCCGG                TTGCTGTAATACCTT 100 44
JA116_RS17165 3573149 .. 3573167 -  -5.8   -3.1585   TCATTGAAGCCAACA             CCCTGCTC AGC GGGCTGGG             CTTTGAAAGTGCCGG  54 472
        tusA NONE
JA116_RS17145 3570239 .. 3570256 - -11.3  -4.19817   GTTACTGACTGAAAA             GGGATGC TGCG GCATCCC              TTTTTTTATCTCACC 100 31
JA116_RS17130 3566121 .. 3566170 -  -9.4  -4.15029   ACTGGAGACAAACAA CTGGCTCAGTC-CGGATGCAATG ATCTA CATTGAATCCGAGTCTGAATCAG ACACACTGGTTGTTC  82 441
JA116_RS20480 NONE
        ftsY NONE
        ftsE NONE
        ftsX 3561425 .. 3561436 -  -5.8  -3.47541   TACAAATAAAAATGA                CGTC GGCA GACG                 GTAATGGTAAATAGT  59 159
        rpoH 3560500 .. 3560512 -  -6.3  -4.35644   ATTATCAGAAAATAA                TATGG CTA CCATA                GCAGATTGCGGCAGA  72 57
JA116_RS17095 NONE
JA116_RS17090 NONE
JA116_RS17085 NONE
JA116_RS17080 3556503 .. 3556519 - -15.1  -2.73875   TTGTCTGCAATATCA              CCGGGGC AAA GCCCCGG              CTGTTATTTTTCTCA 100 54
JA116_RS17070 3553915 .. 3553944 - -10.7  -3.24232   CTCCCCTGAAACACA       CTG-CCCGCATCAG TCA CCGCTGCGGGTCAG       TTCAGCGGTGATGAA  81 22
        livH 3552927 .. 3552943 -  -9.5  -3.07299   GACAGCACAAACAAG              GTTATCG TGG CGATAAC              GGCGTTGATCCAGTG  72 49
JA116_RS17055 3550849 .. 3550879 -    -9  -3.75153   GGCTGGTAATGGAAA      GCAGCGGCGCGAGG GATTT CCCCGC-CCGC-GC      TATAAATCAAAAGAG  78 48
JA116_RS16965 3543106 .. 3543122 -  -2.1    -2.914   GCTATGACACTAAAC              GTCCCGC ACG GTGGGAT              TTTTGGGGTACTTAA  42 504
JA116_RS16960 NONE
JA116_RS16955 NONE
JA116_RS16950 NONE
JA116_RS16945 NONE
JA116_RS16940 3538435 .. 3538450 -  -8.2  -5.64274   TCAGGCATAAAAAAA              CCCCGC GATT GCGAGG               TTTAGAATTTGTATA 100 124
JA116_RS16930 3536715 .. 3536730 -    -9  -3.52162   CAGAAATAACATCAA              GGCTAC TTCG GTAGCC               TTTTTTATTGCCTAA  73 160
JA116_RS16920 NONE
JA116_RS16915 NONE
JA116_RS16910 NONE
JA116_RS16905 3534594 .. 3534613 - -11.4  -4.83615   CACCTGTTATAAAAA            GCCCCGCT ATTT AGCGAGGC             GTTGTTGTTCATATA 100 206
JA116_RS16900 3534385 .. 3534403 -  -8.8  -4.82901   CGCGGCGCATAAAAA             GCCCACTC AGT GAGCAGGC             TTCGTGATGGGTTAT 100 40
JA116_RS16895 3533425 .. 3533447 - -10.6   -2.8507   CGATGGAATCAATCA           GGGTGTAAGT TAA ACTTACTCCC           CTTCACTTGCTGCAA  75 383
JA116_RS16890 3532455 .. 3532469 -  -9.2  -2.69601   GTCATACCAAATTCA               CCGAGC ATT GCCCGG               ATGCGTTTCCATGCG  68 496
JA116_RS16880 NONE
JA116_RS16875 3529299 .. 3529315 -  -3.6  -2.67803   TTTTCATGAAATTTA              CTCCTC GGACT GAGGTG              GTTTTGTGGTTGGCT  44 6
JA116_RS16870 NONE
JA116_RS16865 3527177 .. 3527193 -  -7.2  -5.00616   TTCCTTCTGAAAAAA              GCGGCC GTAAT GACCGC              TTGTACATGACCGAA  89 42
JA116_RS16860 NONE
JA116_RS16855 3526617 .. 3526628 -  -2.2  -2.89881   CACTCATTCCAGATA                CCTC ACAT AAGG                 TTGCAGTAAAGCGTC  41 2
JA116_RS16850 NONE
JA116_RS16845 NONE
JA116_RS16840 3525470 .. 3525483 -  -8.1  -5.71983   GTAAGCATAAAAAAA               GCTGC CGCG GCAGC                TTATGGGATGGGTTT 100 44
JA116_RS16835 NONE
JA116_RS16830 NONE
JA116_RS16825 NONE
JA116_RS16820 NONE
JA116_RS16815 NONE
JA116_RS16810 3519737 .. 3519753 -  -2.2  -4.27117   CGGCGATAAGATAAA              GTGATC TTCCG GCTCAC              CGGCGATATTGCGAC  58 151
JA116_RS16800 3518248 .. 3518270 -  -3.5  -3.22306   AAATAACACAGCTAA           TAGTGGAAA TGATT TTTTCACTA           AACTCACCTCTTAAA  48 29
JA116_RS16795 3517822 .. 3517834 - -10.5  -5.76633   TCAGATATAAAAAAA                CCCGC TGA GCGGG                TCTTGATTTTAATTC 100 34
JA116_RS16790 NONE
JA116_RS16785 NONE
JA116_RS16780 3512809 .. 3512820 -  -7.2  -6.19443   CAGACGAAAAAAAAA                CCGC CGGA GCGG                 TTATTTGGATTGAGC 100 51
JA116_RS20475 3511311 .. 3511346 -  -5.4  -2.66452   ATTTTGATAAGTAAG    TGACTGCCGCGCCAG GAATCCA CCAGCGCGGCT-TCA    TTTTATTCTTCTGCT  49 28
        livG NONE
        livF NONE
JA116_RS16745 3508143 .. 3508176 - -14.9  -3.23393   TTTCAGCTGATAACA     CAAAGCAGGA-AAAAC CAC GTTTTATCCTGCTTTG     TCAGCAATCTCAGGC 100 57
JA116_RS16740 NONE
        kdpA NONE
        kdpB 3504068 .. 3504078 -  -6.8  -3.26471   TTATCCTTATACTAA                 CCCT GTC AGGG                 TCAGTAACATATCTA  61 6
        kdpC NONE
        kdpD NONE
        kdpE 3499822 .. 3499836 -  -4.4  -4.76088   CAAACTAAAAAACAA               TAAAAT ACC ATTTTA               AACACATGGAATTTT  71 271
JA116_RS16710 3495634 .. 3495663 - -19.5  -5.24531   ACGGGGTACAAAAAA       GAGGGGGATTATG AAAA CATAATCCCCCTC        TTTATTTATCTGCAG 100 45
JA116_RS16705 3494093 .. 3494127 - -13.7  -2.88231   ATCATAATCAGGATA    CGGCAGATAACGGGCA AAAT TGCCCGTTATC-GCTG     TACTGTCCGGTAATA  93 41
JA116_RS16695 3490508 .. 3490535 - -12.8  -5.30686   AACAGGCATAAAAAA        GGGGATTCCG TATGACAC CGGAATCCCC         GAAAAGGCGGGATCA 100 78
JA116_RS16680 3486137 .. 3486163 - -10.9  -5.46657   TACCTGAACAAAAAA         CGCCTTTTCTG AGCAA CAGCAAAGGCG         TTACAGACACGGTGT 100 64
        mreB 3477235 .. 3477248 -  -8.1  -3.09516   GCCTGCAGTATTGAA               CGGAC GGGA GTCCG                CTTATTCTTCACTGA  63 27
        mreC NONE
        mreD NONE
JA116_RS16620 NONE
         rng 3473339 .. 3473351 -  -5.5  -2.87683   ATATCCGTTTATATA                CGGCA GTG TACCG                CCAATGAATTACATC  50 34
JA116_RS16610 NONE
JA116_RS20470 NONE
JA116_RS16605 NONE
        tldD NONE
JA116_RS16595 NONE
JA116_RS16590 3466387 .. 3466431 -  -9.3  -4.41897   AATAAACCACCAAAA GCTTACCGTCAGCTGTTCCAG TAT CTGAAAGAACTGGCAGAAAGC GCTTAATCCGCCGTC  95 28
        pmbA 3464336 .. 3464355 -  -2.7  -5.60993   TCCGGCATAAAAAAA            CCCCGGC ATAAAA GTCAGGG             TTTTTCATGCAGCAA  84 46
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB 3451838 .. 3451880 - -13.5  -4.84363   TTAAACCATTAAAAA TGCCTCCGGCTGTG-CGGTC ACCT GAGTGACACAACCGGAGGCA GTTACCTTACGGAAA 100 90
        ibaG NONE
        murA 3450113 .. 3450128 - -10.4  -5.43866   TAAGGTGTAAAAAAA              GAGCGG ATAT CCGCTC               TTTCTGTTTACAGCA 100 67
        cysJ NONE
        cysI 3441404 .. 3441430 - -17.3  -4.32857   CGCCGTAAATATAAA         CACCGCGCCGC GTAAA ACGGCGCGGTG         TTTTATTTCAGGCGG 100 33
        zapE 3438008 .. 3438027 -  -8.6  -2.58528   AAATTAAAAATAATT            CCCCGAAA CCCT TTTCAGGG             GCGCGCATTATACCA  63 33
        rplM NONE
        rpsI 3436916 .. 3436929 -  -9.5  -5.64274   GCAGTTATAAAAAAA               CCCGC CGTG GCGGG                TTTTTTGTATTCCAA 100 53
        sspA NONE
        sspB 3435432 .. 3435447 - -10.4  -4.81249   CTTTAAATGCAAAAA              GACCGC TTTC GCGGTC               TTTTTATTTATCGGT 100 44
        arcB 3426277 .. 3426291 -  -4.3  -3.37531   TTAAAACGATACCAA               CAGAT TTCAT ATCTG               ACTCCTTTTGTAGTA  51 262
        elbB NONE
        mtgA 3424702 .. 3424718 -    -8  -4.37211   GAAACCGATAAGAAA              CCTGAC TTAAT GTCAGG              TTTTTTTATGGCCTT  79 214
        rsmI 3420276 .. 3420288 -  -5.5   -3.8969   GGATGTACAGAATAA                CTCCG CCC CGGAA                GACCGGGTGGCGGGA  61 47
        rnpB 3419832 .. 3419856 - -20.1  -4.05788   TGCCCTGAAATGAAA          CAACCCCGCGT CAG ACGCGGGGTTG          TGATAGTGAGGAGTC 100 31
JA116_RS16350 3418054 .. 3418080 -  -8.7  -6.15828   GGTACGAAAAAAAAA        TACCCGCCACAG ATAA CAG-GGCGGGTA         TCAGATAATAACTCA 100 55
JA116_RS16345 3417119 .. 3417136 - -11.3   -3.8448   TAATATATTATTAAA             CATCCGC TCCG GCGGATG              TTTCTTTTTCAGTTT  95 3
JA116_RS16310 3410691 .. 3410707 -  -9.4   -5.4492   TATACACACAAAAAA              GCCACC TTACT GGTGGC              TTATGAAGAAAAACA 100 226
JA116_RS16305 3409175 .. 3409204 - -15.1  -2.86961   TGATAAGACGGAAAG       CAAAACGGCCTGC ATAT GCAGGCCGTTTTT        TTATCTGTTATTAAC 100 36
        hybO NONE
        hybA NONE
        hybB NONE
        hybC NONE
JA116_RS16275 NONE
        hybE NONE
        hypA 3398956 .. 3398983 -  -3.4  -3.28712   CCCTCCCCGTCACAA        CCGGTGATGGTGT TTG ATACC-TCACTGG        CGATGGCGGAAGCCG  47 238
      blaDHA 3397027 .. 3397052 - -13.9  -2.95527   AATAATCTTAAAGTA         CGGCCCCGGCG TGTC CGCTGAGGCCG          CAGCACCGGAAAAAT 100 40
JA116_RS16250 NONE
        pbpC 3388456 .. 3388468 -  -4.1  -2.64561   CGGTAATAAAGATAT                TCACC GAA AGTGA                GAGTCCCGCTGAGTT  45 130
JA116_RS16240 3387435 .. 3387451 -  -4.3  -3.99592   ATTTATTATCACAAA              CTGGCAG GCA CCGGCAG              TGATGATGATCTGCG  60 295
        tsaD 3376538 .. 3376551 -  -9.5   -5.2112   AAGAGGATTAAAAAA               GGCGC ATCA GCGCC                TTTTTTTGTGTCCGG 100 44
        folB 3375302 .. 3375323 - -12.3  -3.22162   GGCAGATAAAATAAG           GCACTCCCG GAGG CGGGAATGC            AGGATACGAACAGCA  93 116
        bacA 3374308 .. 3374345 - -13.7  -3.06618   ATAAATAAAATATTA   CACATAAAAGCCGGTAA ACCA TTACCTGCTTTTATATG    TCCGTTATTAATTAT 100 131
        hypB NONE
        hypD NONE
        hypE 3370799 .. 3370834 - -11.8  -5.27335   GGCGGCAAAGAAAAA    TCCCCGGGGAGCATAC ACCA GTATGTGACCCGGGGA     TTTTGATGCAGCCAA 100 78
        yedF 3368463 .. 3368474 -    -3  -5.54907   TGCAGAAAATAAAAA                TGAT TTTT ATCA                 GCTGCTTGAAAAGAA  91 402
JA116_RS16160 3367348 .. 3367384 - -11.6  -4.25606   GAACACTGAAAACAA   CATCTGCGGGAAGCCCG GTAA CAGGCT-CCCGCTGATA    CCCGCTGTTTATGCC 100 34
         mak 3365168 .. 3365188 -  -4.7  -4.58283   GAAGCCGGTGAAAAA            GCCTTTATC GAT GATGAAAGC            CGTTTCAGAATCTTT  71 183
        phoB 3358364 .. 3358379 -  -2.4  -3.44848   TTTTTCCACGAAAGA              CGCTCA AGCA CGCGCG               ATCCTCTTGCGGTTT  47 51
        phoR 3357064 .. 3357077 -  -9.5  -4.67697   GCTTAAAAGAAGAAA               GCGGC AAAC GCCGC                TTTAATGAGAAGATT 100 27
        brnQ 3355266 .. 3355281 - -10.4  -5.09685   TAAGAGATACAAAAA              CCAGCC TGCG GGCTGG               TTTTTTTGTGCCTGA 100 96
        queA 3352566 .. 3352577 -  -2.2  -2.54186   ATATTTCACAAAACC                TCCG GCAT CAGA                 AAAACAGTCTGATGA  39 105
         tgt 3351377 .. 3351418 -  -5.7  -4.07124   TATCAGGCAGATAAA CCTGCCGGTGGTGCATCGC CTAT GTTATACACCACCGGGTGA  TCCCGTTTCGGGGAA  66 42
        yajC NONE
        secD NONE
        secF 3348085 .. 3348112 - -12.8   -5.4251   TTTACACATAAAAAA        CACCCTGCATGC TTGC ACATACAGGGTG         TTTTCTGTTTTTCAC 100 49
        nrdR NONE
        ribD 3346422 .. 3346448 -  -3.7  -3.53012   CCTGTGTTTTTCAAA         CTCCGGAAT AAAATTTAA ATTCCGGCG         TAAATTCAGCGATTA  51 38
        ribE NONE
        nusB 3345366 .. 3345382 - -13.7  -4.87328   CAGATAAAGACAAAA              GGCCGGT TTT ACCGGCC              TCTTTTATATCATGT 100 72
        thiL 3344290 .. 3344310 -  -5.4  -5.36441   TCCGGACACAAAAAA            CCCTGC ATCACATCA GCAGGG            TTTTTTTATGTCACT  84 58
        thiI 3339418 .. 3339439 - -11.5  -5.80727   AAAAATAATAAAAAA           CCCCGGCTC AGCA GAGACGGGG            TTCAGAGACAATGAT 100 52
JA116_RS16035 3337557 .. 3337582 -  -6.8  -6.08342   CAACAAATAAAAAAA         CGCCCGGC TGTTTATGAT ACCGGGCG          TTTGAGATTACTGTA 100 52
JA116_RS16020 3335374 .. 3335402 -   -11  -3.27498   CAGAGCTGACAGGAA       CCGGCAACCATGC TGAT GCG-GGTTGCCGG        ATAACACTCAGTCGC  81 33
        bolA 3324888 .. 3324905 -  -2.7  -3.60151   TGTGTGAAACGATAA             TG-AACCG GGG CGGTCGCA             TTTAAAAACCGAGTT  50 202
         tig 3323430 .. 3323455 - -17.7  -5.75599   GAAATGACAAAAAAA         CCGCAGGCAAT ATAC ATTGCCTGCGG          TCTTAATCAGATAAA 100 71
        clpP 3322564 .. 3322619 -  -4.1  -5.42259   TGAGCTGCAAAAAAA TATCAC-AGCACCG-CTGTACCCTGCC ACCC GGCAGAATACGGGCAGTACCGGTGTTA CTTACCGGTGTGTGT  85 27
        clpX 3321176 .. 3321193 -  -9.9  -4.78029   GTAAGAAAAGCAAAA             TGAGGGA AAAT TCCCTCA              TTTGGTTAATATTGA 100 63
        hupB 3318097 .. 3318115 - -13.2  -6.34616   CTAAAACAAAAAAAA             GCGCATCA TTC TGATGCGC             TTCCTGTTTAGCTTT 100 93
        ppiD 3316083 .. 3316112 - -10.7  -4.27117   TTTTCAGAACAGAAA       TGCGAAAGGCTGC GAAC GCAGCCTTTCGGG        AGATGTAACACGACA 100 70
JA116_RS15935 3315656 .. 3315669 -  -6.7  -3.75153   CCCGGGGAAGGGAAA               TCAGC TTCT GCTGA                TATTACAACGCTATC  67 28
JA116_RS15930 3315116 .. 3315152 -    -3  -5.52384   CCGCCATGAAAAAAA   TCACCGGCCTGCAATAA TCAT CTGTTAC-GCCCGGTGA    CCGGCCGGGCGTTTT  82 54
JA116_RS15915 NONE
JA116_RS15910 NONE
JA116_RS15905 3309107 .. 3309128 - -14.5  -5.76237   GATATAAATAAAAAA           GGCGTCTGA ATCA TCAGACGCC            TTTTCTGCTAACGGG 100 95
JA116_RS15900 3308513 .. 3308531 -    -3  -3.80133   CAGTGTCATAAAATA             GACCAGCG CCG CACAGATC             AGCATAAAACCGTTA  53 152
         ffs 3306018 .. 3306032 -  -3.4  -3.86312   ATGGAGAATGAATAA               CGGAGA CAA CCACCG               GATGCAGACAGAGGC  53 95
        acrR 3299202 .. 3299215 -  -3.7    -2.973   TTATAAAATGTAAAT               CAGGC GTCT GCCGG                CGTCAGCTGCATATT  46 11
JA116_RS15855 NONE
        mscK 3294989 .. 3295000 -  -7.2  -3.23692   CATCAGGATTATGAA                CGCC GTCT GGCG                 CAAATGACCGATGAC  62 364
         apt 3293842 .. 3293863 -  -9.4  -2.80113   CATCATGCTACCACA           GCCTCACC ATAATG GGCGAGGC            TGAGTTTGCGTTTAA  70 55
        dnaX 3291840 .. 3291857 -  -5.6  -3.72576   CTCTCTTTGACTAAA             TTGCGT ATTCCA ACGCAA              GGTGGTTAAACAGGC  61 31
JA116_RS15825 3291496 .. 3291509 -  -2.3  -2.64099   GGTTTGCATCAGAAC               GGCAT CTTA AAGCC                CGGCGGCAGCTGCAT  40 5
        recR 3290813 .. 3290849 - -10.2  -3.65827   CAATTCTGAGGGAAA   GTGACAGACGGCACAAG CCGT CTCAGGCCGTCTGTC-C    GGATAACAGGCAGAA  82 48
        htpG 3288745 .. 3288771 -  -9.6  -5.27477   ATTTCAATGAAAAAA         CCACATGATT ATCATGA AATCATGTGG         TTTTTAAGCGGGTTA 100 79
         adk 3287931 .. 3287948 - -12.7  -5.67967   ATCAGGATAAAAAAA             GGCAGCC GTTT GGCTGCC              TGACAGAAATAAGTG 100 46
        hemH NONE
JA116_RS15800 3285581 .. 3285613 -  -2.1  -4.13437   TAACCAAAAAGAGAA     TGTGAGCGGACA GAACCCTTAA TGCCCGCTCA-A      CCGGAAACTATGCTG  55 33
JA116_RS15795 3284176 .. 3284193 - -12.7  -5.24531   ATTGCCCATAAAAAA             CGCCGGA AAAT TCCGGCG              ATTATCTGTCAGTTA 100 47
JA116_RS15790 3283718 .. 3283733 -    -9  -5.28176   TGTACGTACAAAAAA              TCCTGC CGGA GCAGGA               TTTATATCAGAGGAT 100 71
        ushA 3278761 .. 3278778 -  -4.1  -4.16909   ATGCGAATAAAAACA             GGGAC AAGCTGAA GTCCC              GATTTTTATTACTCA  61 50
JA116_RS15775 3275697 .. 3275748 - -11.1   -2.6176   AACGGGACTGATAAG TGGTCATCATGCAGGTAACAGACGG GAAT CCGGCTGTTACCTG-ATGA-ATCCA GCCGTTACGGATTAT  76 37
        cueR 3270874 .. 3270900 - -15.8   -4.5954   TGACAGGATATAAAA         CGGCGTCCGCCC GGC GGGCAGACGCAG         AAAACAGGCGGATTA 100 38
JA116_RS15750 NONE
JA116_RS15745 3264325 .. 3264342 -  -9.1  -5.71712   TGTCACATAAAAAAA             CGGCTCC GCAG GAAGCCG              TTTTATCTTACTGAA 100 52
JA116_RS15740 NONE
JA116_RS15735 3263172 .. 3263188 -  -2.9   -4.6955   CAGCAAGAGATAAAA              CACTACG TTT CATAGAG              AACACCTTCCATTGA  64 244
JA116_RS15730 3261630 .. 3261661 -   -16  -2.69057   CCGGAAAGACAACAG      CAAAACGGCCTCTG GTGA CAGAGGCCGTTTTT       ATTTATCTCAATAAT 100 64
JA116_RS15700 NONE
JA116_RS15695 3254215 .. 3254229 -  -4.2  -3.94409   CATATCATGGACAAA               GGATTC AGT GAAACC               ATCGCGGCCACACTC  58 490
        cysS 3248671 .. 3248694 -   -11  -5.74086   AAACGAAATAAAAAA          GCCCGGCA ATAAATCA TGCCGGGC           TTTTCAGTCAGAATG 100 50
        cybC 3248095 .. 3248117 -  -9.8  -4.78848   CGCTGAAATATAAAA           CGCCCGGC AGTCATA ACCGGGCG           TTTTTAATACTGAAG 100 61
JA116_RS15640 3245921 .. 3245935 -  -5.6  -4.32649   ACGGGAAAAAGTAAA               CCGACA CTG TGGCGG               ATGTACGCGAAACGA  70 210
JA116_RS15590 NONE
JA116_RS15585 3240195 .. 3240217 - -11.3  -3.06501   TATAGCGCGACCGAA           GCCGAGAGC CGTAT ACTCTCGGC           TTCACCCTTTTTTGT  83 27
JA116_RS15580 NONE
JA116_RS15575 NONE
JA116_RS15570 NONE
JA116_RS20465 NONE
JA116_RS15560 3236068 .. 3236080 -  -9.1  -2.87931   GTTATTGTTCACACA                GACCG TGG CGGTC                AGTATTGCTCAGCAG  67 462
JA116_RS15545 NONE
JA116_RS15540 3232659 .. 3232674 -  -8.2   -5.4505   CCTCTCAATAAAAAA              CCCCGC ATTT GCGAGG               CTTACATACAATTAT 100 77
JA116_RS15535 3231934 .. 3231950 -  -7.2   -4.8048   GGCGTATATGAAAAA              GGCCGC ACAGG GCGACC              TTTAAGATTTGTGGC  85 129
JA116_RS15530 NONE
JA116_RS15525 NONE
JA116_RS15520 NONE
JA116_RS15515 3230215 .. 3230234 - -11.4  -5.26316   GCAGCGCATAAAAAA            GCCCCGCT GTTT AGCGAGGC             CTTGTTTATCTTTTG 100 270
JA116_RS15510 NONE
JA116_RS15505 NONE
JA116_RS15500 NONE
JA116_RS15495 NONE
JA116_RS15490 NONE
JA116_RS15485 NONE
JA116_RS15480 NONE
JA116_RS15475 3223779 .. 3223796 - -12.7   -2.7264   AAACCCTCCGGAAAT             GGCGGCA TTTC TGCCGCC              GTAACTGATTACTTC  88 34
JA116_RS15470 NONE
JA116_RS15465 NONE
JA116_RS15460 NONE
JA116_RS15455 NONE
JA116_RS15450 NONE
JA116_RS15445 3221500 .. 3221516 -  -2.2  -3.51557   GTGGGCAAAGAAAAG              CAACGG GCTGT CCGTCA              GTTTTTTTTTGCCTC  47 23
JA116_RS15440 NONE
JA116_RS15435 NONE
JA116_RS15430 NONE
JA116_RS15425 NONE
JA116_RS15420 NONE
JA116_RS15415 3215530 .. 3215543 -  -9.5  -5.26316   TTACCCCATAAAAAA               CCCGC CGGA GCGGG                TTATTGTTGTAATGC 100 26
JA116_RS15410 NONE
JA116_RS15405 3211463 .. 3211475 -  -4.7  -2.88544   TTGTAGTCTGACATA                CCGGG AAC CACGG                CACGCCAAGCTTTGC  49 212
JA116_RS15400 3210573 .. 3210584 -  -7.2  -5.64274   TCAGGCATAAAAAAA                CCGC CGGA GCGG                 TTATTTGAATTGGGC 100 51
JA116_RS20455 3208582 .. 3208595 -  -6.7  -2.91395   ATCGCTTTGATAAAG               CAGGT GAGA ACCTG                TTAGATTTTATGCAA  58 496
JA116_RS15380 3206246 .. 3206260 -  -2.8  -2.71791   ATGTGTTGTGGAAAC               CTGTAG TTA CTATAG               CCCAAGTGATTAAGG  41 60
JA116_RS15375 3205933 .. 3205955 -  -9.2  -4.03995   CTCTCTATAAAAATA           TGTGCGGA TACTTAG TCCGCACA           GACAACACCCACCCA  83 57
JA116_RS15365 3204232 .. 3204244 -  -6.3  -4.32131   GGAAAATAAAGCAAA                CAATC AGC GATTG                TCCTGATGAATTTGC  72 291
JA116_RS15355 3202356 .. 3202402 -  -3.3  -5.47399   TTAATTGTAAAAAAA TTTATTAAATACGCACCAGAGT GTTA ACGACGGTG-ATATTTAATAAA TTATTCTGCAACATT  82 52
JA116_RS15350 3201253 .. 3201269 - -11.5  -5.36441   CTTTTATATAAAAAA              GCCCCCG GAA CGGAGGC              AAAGGACTTTCGTCA 100 76
JA116_RS15345 3199844 .. 3199899 -  -7.2  -5.58454   GGGATATCAAAAAAA CAATAATAACGGTAAGACAGGAATAAA CTC TCTTTTCGCGCCTTACC-TTATTACTG ATATTATTTATTGCT 100 33
JA116_RS15340 3199356 .. 3199387 - -11.7  -3.44274   CAACGATAATATTAA      TGATCCTCCGCTA TGACAC CAGCAGAGGATCA       TCACTGAGACAGATT  89 56
JA116_RS15335 3198534 .. 3198559 - -10.6  -6.47325   AAAAAATAAAAAAAA         GGGAATTCAT AAAATA ATGAATTCCC          ATAAAATAAAGTATT 100 71
JA116_RS15330 3197165 .. 3197178 -  -5.3  -3.48276   CTCCCGGTCAGATAA               CAGAA TCCG TTCTG                TCATGGTGTGTCTGC  57 26
JA116_RS15325 3194922 .. 3194937 -  -3.2  -5.00611   GATAAATAAAATAAA              TTCCGA AAAT TCGGAT               AAACACCCGAAAATA  71 118
JA116_RS15320 3194192 .. 3194222 -  -4.9  -3.44527   CAGCCATTATTATAA       GATGAATAGCA TTTATATTT TACTATTCATC       TTATAGTGACCTGCT  55 72
JA116_RS15315 3192877 .. 3192901 -    -3  -4.80656   AGGAACAACAGAAAA          GTTATGTT CAGTTCAGT AACATAAC          GACCATTAGCCCCTT  68 145
        adhP 3191779 .. 3191796 - -14.1  -5.60993   TCCGGCATAAAAAAA             CCGCCCG GAAA CGGGCGG              CTGAATAAGATGACA 100 59
JA116_RS15305 3190666 .. 3190680 -  -4.3  -3.71848   GGTTTCCAGGAAGAA               GGTAA AATGA TTACC               CATGAGCTGGGCCCG  58 323
        tssH NONE
JA116_RS15255 3177364 .. 3177388 - -17.3   -4.4078   CTCTGTTAATTAAAA          GACAGAGCCAT ATA ATGGCTCTGTC          CGGTACGTCTGTTAC 100 37
JA116_RS15250 NONE
JA116_RS15245 NONE
JA116_RS15240 NONE
JA116_RS15235 NONE
        tssB NONE
        tssC 3170951 .. 3170963 -  -7.7  -3.12351   TGCTTTGACAGGTAA                CCACA CCC TGTGG                TGACCACTTTTGTTA  63 134
JA116_RS15220 3170372 .. 3170393 - -12.3  -4.96848   TCCCGGAGATAAAAA           CCTGCTGCC TGAA AGCAGCAGG            TTTTATTCCAACATA 100 49
        tssJ NONE
        tssK 3168227 .. 3168243 -  -9.4  -3.25824   CATCATGCAGAAAAG              CCCCCA TTGAC TGGGGG              GACTGCTCTTCCTGA  74 117
        tssL NONE
        tssM NONE
JA116_RS15195 NONE
JA116_RS15190 3162900 .. 3162917 -  -6.3  -2.70932   TTTCTTCCTGAACTA             TTTCCCA ATTC CGGGAAA              TTTGTCTTTATTTTC  54 148
        vgrG 3159634 .. 3159647 -  -9.5  -3.01924   CAGCTGTCCGGAACA               GCCCC CGCA GGGGC                TGTGGTAAATCAAGG  71 35
JA116_RS15175 3158515 .. 3158527 -  -4.8  -2.99161   TAATTGATTATAAAC                GGCT GTCTA AGCC                TAATTTATAGAGTTC  50 5
JA116_RS15170 NONE
JA116_RS15165 3157103 .. 3157136 - -14.9  -3.23393   TTTCAGTTGATAACA     CAAAGCAGGA-AAAAC CAC GTTTTATCCTGCTTTG     TCAGCAATCTCAAAG 100 63
JA116_RS15155 3154116 .. 3154142 - -14.4  -6.04953   ACAGAAATAAAAAAA         GCCACCGGTCAC ATA ATGACCGGGGGC         CGTCTCTGTTTACTA 100 50
JA116_RS15145 3152722 .. 3152732 -  -4.6  -4.82901   CTTTCCCGATAAAAA                 CGAG ATA CCCG                 CCGCATTTTTGTTAT  74 113
         gss 3149051 .. 3149083 - -20.6  -5.01546   AAATGGATATAAAAA      CGGGCAGCAACCGG TGAAT CCGGTGGCTGCCCG      GGAGAAATACAGCGG 100 48
JA116_RS15130 3148669 .. 3148679 -  -4.6   -4.4715   TTTTAATGTACAAAA                 CGCC CGA AGCG                 CTTGGTAAAACGGGC  68 2
        ykgO NONE
        zinT 3147799 .. 3147829 - -11.2  -5.03961   AATGAAATAACAAAA       CAGCCCGGAAAC AACATCA GTTTTCGGGCTG       TTGGTTTTATATTGC 100 62
JA116_RS15115 NONE
JA116_RS15110 3145195 .. 3145212 -  -5.6  -2.72461   CAATGCCCGGTAAAG             GCTGAT TGTGAG ATCAGC              ACCTTACCGGGTCAT  52 81
JA116_RS15105 3143824 .. 3143846 -  -7.7  -3.03441   TATCAGCTGGTAACA           GACGCTCCT TTTAC AGAAGCGCC           TGTGAATCCCGGGAA  62 55
JA116_RS15100 3141560 .. 3141590 -   -12  -5.40072   CTGCCCGTAAAAAAA       CCGCGATAATTGTC ATT AATAATTATCGCGG       TTTTGTTTTTACTGC 100 47
JA116_RS15040 NONE
JA116_RS15035 NONE
JA116_RS15030 3124569 .. 3124585 -  -4.3  -3.73224   TGACCGCCCAGGAAA              TCAGCCA GTT TGGCCGC              TTTGGTCTGAAACCA  58 376
JA116_RS15020 3122070 .. 3122112 -  -8.3  -2.57683   ACATCTCCGGACAAC CCCGCGAACCTGCGGAGCCGG TTT CCCGC-CCGCTGAT-CGCCGG TTTTCTCGCCGCTCT  59 120
JA116_RS14985 NONE
JA116_RS14980 3112895 .. 3112934 - -16.6  -3.17571   AAGGCGGCAAGGGAA  GAATTCCGGGGAACATAC ATCA GTATGTGACCCGGAATTC   TGAGTGCAGCCAACA 100 318
JA116_RS14955 3105467 .. 3105484 -  -7.1  -2.83164   GTAGCGATCATGACA             GATGAAA TTAA TTTCATC              TGTCAATGAGGCTGA  59 60
JA116_RS14950 3103143 .. 3103158 -  -6.2  -3.52307   CAATATATAGCAGAA              TAAAGC CGCA GCTTTA               ATGATTATATCCGGG  61 120
        rimO NONE
JA116_RS14940 3100648 .. 3100661 -  -9.5  -5.47218   TTTCATGTAAAAAAA               CCGCC GGAC GGCGG                TTTTTGCACTTATTT 100 35
JA116_RS14915 3096277 .. 3096324 -  -4.1  -2.97475   CCTGCTAGCACAAAT GACCGACCGGCAATTAGCAAC CAGTGC GATGTTAATTGCCGGCTATTC TCACATACAGGGGGT  47 68
JA116_RS14910 3095362 .. 3095393 -   -14  -3.09415   GATAAATCAGACAGA      TACAAAAAAGCGCCC GAT GGGCGCTTTTTT-TA      TGCTGCTTTATTTTG 100 33
JA116_RS14905 3094035 .. 3094045 -  -2.4  -3.29584   GTCATAATAAAATTA                 CGGG TGC CCTG                 TTCAGGGTTTCATGC  45 27
JA116_RS14900 3093382 .. 3093405 - -13.2  -3.65696   AGTGACATAAATTAA          TAAGGCCTGC TATT GCAGGCCTCA           GATAATTGCTCAGTC 100 52
JA116_RS14895 3092509 .. 3092531 -  -9.2  -6.02919   GCAGAAACAAAAAAA           CCGCAAAACA GAT TATTCTGCGG           TTATTGAACGGCTTG 100 50
JA116_RS14890 NONE
JA116_RS14885 NONE
JA116_RS14880 3088100 .. 3088118 -    -9  -3.60098   ACGCCTCACCTTAAA             GATGTATT TTA AATACATC             TTATAGCCTTTCCGG  75 58
        tehB 3087169 .. 3087202 - -15.2  -4.20531   GATACTGATGCAAAA     CGGCACGCCGCCGG AAAAAA CCGGTGACGCGCCG      CGAGGGTAATAATAA 100 41
JA116_RS14865 3084167 .. 3084190 -  -9.6  -3.64487   GCACAGTGTGAATAA          TAACGGGTAG TTTC CTGCCCGTTA           TTATTTCTGTTTAAA  78 50
         hcp 3077666 .. 3077689 -  -3.1  -3.29626   TAACAGTTACAGCAA          TTACGCGCC TAACAC AGCGTGTAA           ATCATTTTCTACAGT  47 2
         hcr 3076543 .. 3076561 -  -9.5  -5.19879   CCGGAAACAGAAAAA             GCGCCGC GGAAA ACGGCGC             TTTTTTGCAATTATA 100 56
JA116_RS14830 3075854 .. 3075870 - -12.3  -2.64051   GCACTATACAACGTA              TCCCGCA GAC TGCGGGA              AGTTACCTCGGGTTA  88 230
JA116_RS14825 3074561 .. 3074605 - -13.8  -3.29109   AAAACGGCACATGAA CTGACTGTCCGCCGTCACAACA AAG TGTTGCG-CGG-GGAGAGTCAG TACCTGTGCCGTCAG  95 99
JA116_RS14815 NONE
JA116_RS14810 NONE
JA116_RS14805 3072828 .. 3072843 - -10.4  -4.67354   AACAGACATACAAAA              CCGGCT GAAA AGCCGG               TTTTTTTGTACACTG 100 55
        speA 3069035 .. 3069055 -  -3.2  -4.55287   CTTACTGACACAAAA           CCGGACGTA TTAT TCCG-CCGG            GTATTATTCATCTTC  63 45
        speB 3068030 .. 3068047 -  -9.1  -4.70659   CGGCAGATGTAAAAA             GACCCGC AGTT GCAGGTC              TTTTATTTTAACGGT 100 54
JA116_RS14785 3067064 .. 3067088 - -15.8  -5.76633   GTATACATAAAAAAA          TCCGCCGCAT TCAGC ATGCGGCGGA          TGTCTGTGAATATAA 100 51
JA116_RS14780 3066050 .. 3066067 -  -9.9  -3.92641   AACCTGATTCAGAAA             GCCACAT TTTT ATGTGGC              TTTTTTATTGCTGAC  86 54
JA116_RS14775 3064580 .. 3064608 -  -8.9  -4.37092   ATTTGCCTCACAAAA        TGAGGCGAATAGC ATG GTTATTTGCCTCA        TCCTCTTATTATCCT  86 34
JA116_RS14765 NONE
JA116_RS14760 3061578 .. 3061598 - -16.9  -4.64598   GAATCACTGCAAAAA            CACTGCCGC TGA GCGGCAGTG            TGAGATTGCTGACAA 100 49
JA116_RS14750 NONE
JA116_RS14745 3058942 .. 3058978 - -24.6  -4.68994   ATCATCACTGAAAAA   CCCGCCGCAGCC-CTGA TTAT TCAGCGGCTGCGGCGGG    TTTTCTTTTATCAGA 100 45
JA116_RS14735 3056770 .. 3056780 -  -8.2  -3.36505   AGACCTGACGCACAA                 CCGG TCA CCGG                 TGGTCAGAGCGGACA  69 280
JA116_RS14685 3042788 .. 3042816 - -13.2  -4.96848   GGCGGGATATAAAAA       CGGCACTGCACAG AAAA CCG-GCAGTGCCG        CAGAGAGAATTATTC 100 35
        ilvI NONE
        ilvN 3040268 .. 3040286 -  -9.5  -3.91197   TTACAAATCAGGAAA             CGGCCCG AACAA CGGGCCA             AATAAGAAGAGTGAT  83 67
         cra 3039183 .. 3039206 - -10.4  -5.42975   GGATATAAATAAAAA          TACCTATACG TTTC CGTACAGGTA           TCAGAAAAAATAATA 100 58
        mraZ NONE
        rsmH NONE
        ftsL 3036761 .. 3036781 -  -3.2  -4.37734   CATAACAACGCAAAA            CGCCAGCT GATAA AACTGGCT            TTTTCTTCCGGACGT  61 98
        murE 3033566 .. 3033593 -  -3.4  -3.24747   GTGCGATATCAGCAA        GGGAG-AACGGGA TCA TGCCATCACTCCC        AGCAGGCGGGCGACG  47 10
        murF 3032211 .. 3032229 -    -3   -2.9462   CAGCCAGCCAAATCA             GCATGGGA CAT TCTCCTGC             AAGGCGTGCACAACT  44 4
        mraY NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
JA116_RS14610 NONE
        ftsQ 3023817 .. 3023852 -  -5.4  -2.78596   CATGTCGTTATGACA    GGTGATCAGATGCA CTTTTGCC TGCATCCGCACACC     GGATAATCCCACCGG  50 509
        ftsZ 3021751 .. 3021790 - -11.7  -3.14132   GTCTCGTTTGATTAA  CTGTCTCCC-TGTCATTA TAAAC TAATGACAAGGGAGATAG  TTTAGCACAAAAAGC  84 62
        lpxC 3020594 .. 3020604 -  -4.6  -5.34555   TCAGAGGACAAAAAA                 CAGC AGA GCCG                 GGACGGAAACTGAGT  90 232
        secM 3019633 .. 3019658 -  -2.6  -2.82623   TCTTTTGGAGAATTA         CGCG-GATATC ACGTG GATATTGCGCG         AATATTACGCAGATT  42 30
        secA 3016794 .. 3016810 - -11.5  -4.39998   TATTTACAGAAGAAA              GGCGGGA TTC CCCCGCC              TTTTTGCTTTTTATG 100 62
        mutT 3016244 .. 3016257 -  -2.3  -5.06414   GCTGCGGAAGAAAAA               CGGAT TGCC AGCCG                GAGTGACCTTTCTGA  74 138
        ampD 3010142 .. 3010154 -  -6.3  -3.05384   GGGTTTTGTAGTCAA                TTGGT AAT ACCAA                TTTCTTTTACAGGGT  56 445
        pdhR NONE
        aceE NONE
        aceF 3004550 .. 3004564 -  -4.9  -3.01712   CCTGCGCCGCTAAGA               CCGGC TCTGC ACCGG               TCTCAGTGTAATTGC  50 41
        lpdA 3002891 .. 3002912 - -12.3   -5.8187   CAGGGAATAAAAAAA           TCCGGC-GCC AGA GGCCGCCGGA           TTTTTATGTTCAGCC 100 71
        acnB 2999882 .. 2999907 - -14.8  -5.65177   ACAGGTATAAAAAAA         CGGGAGACAG TGTCTG CTGTCTCCCG          CCGGTAAAATAACTG 100 64
JA116_RS14505 2999291 .. 2999301 -  -5.4   -5.5454   GGAAATAAATAAAAA                 CAAC ATT GTTG                 CAATAACCGACCGAT  87 109
        mscS 2998354 .. 2998377 - -11.7  -5.78622   TTACGGCAAAAAAAA          GCGGCACCC GGAAAA GGGTACCGC           TGATAATATACACCT 100 42
JA116_RS14495 2997725 .. 2997772 - -10.9  -5.17054   ATAACATGCAAAAAA TCCCGATAATTATTCAATCCAC GCCGG ATGGAATGAATA-TTACCGGGA TTTCAGTATTAGTGA 100 95
        argO NONE
JA116_RS14485 2996253 .. 2996264 -  -7.2  -2.69151   GGGCGTCAGACATTA                CGGC AGGC GCCG                 CCTGAAACGGATTAA  58 37
        rpiA 2994531 .. 2994548 - -11.3  -6.17033   AAAAAAAATAAAAAA             GGAACCG TCTC CGGTTCC              TTATTCTGTATCGGT 100 63
        serA 2992954 .. 2992981 -  -9.8  -4.81644   CAAAGAAAACGAAAA        GCATGCGCGTCA TGGA TGACGCGCCTGA         GCGCACACGGACGTG 100 93
JA116_RS14450 2990828 .. 2990839 -  -4.4  -2.95896   TGATGATTCAGAAAT                CTGA TGGT TCAG                 TGTGCAGCAGATTGT  47 65
        pepP NONE
        ubiH NONE
        ubiI 2986961 .. 2986977 - -11.5  -3.75571   GAATGCACTAAAACA              CCGGCCG GAT CGACCGG              TTAAATTTTAGTGCA  95 76
        gcvT NONE
        gcvH 2985142 .. 2985163 - -13.1  -5.82388   AAACCCGAAAAAAAA           CCCTGTTTG CTTA CAAACAGGG            TTCCGCTAATCCGTC 100 39
JA116_RS14405 2979832 .. 2979849 -  -9.8  -3.53012   GCTGTCCGGCTGAAA             GCCCGG TTTTCC CCGGGC              CCGTCAGCCGGAAAA  78 105
JA116_RS14400 2979365 .. 2979379 -  -5.7   -3.5393   AGGAGCTGCTGTAAA               CGGAT CAGAT ATCCG               GATACTGCAAAAGCA  59 15
        xerD NONE
        dsbC NONE
        recJ NONE
        prfB 2974140 .. 2974155 -  -4.6  -3.89614   TTTAATCCTTATAAA              CCCGCT TTTA AGCTGG               CCTCAATAAATTTAT  59 3
        lysS 2972563 .. 2972582 -   -10     -6.13   ATAGTGAAAAAAAAA            GCCCCACA ATCT TGTGAGGC             TCCGTATTCATTTAC 100 49
JA116_RS14365 2972172 .. 2972186 -  -2.8  -3.10056   ATGACTTATTCAAGA               TCACCA TCG TGCTGA               ACGGGTCTGTTTTTT  44 265
JA116_RS14360 2971698 .. 2971708 -  -2.4  -2.87931   TTCAGCCTTTACACA                 CGGG CTT CCTG                 CGATGTACATAAATC  41 86
JA116_RS14355 NONE
JA116_RS14350 2970557 .. 2970570 -  -2.5  -5.37593   GCGTAAATTAAAAAA               TAAAT ACAT ATTTA                ATATAGTTACTACGT  76 256
       speFL 2969846 .. 2969866 -  -4.7  -3.24232   GTGTGTTGAAATATA            GTCAGACAT ATC ATAGCTGAC            AGCGATTTTATAACT  53 425
JA116_RS20450 2968216 .. 2968233 -  -3.3  -3.73224   GTATTCGTCAGTAAA             CGAC-GGC GAC GCCAGGCG             TACCAACCGCTGCGG  51 110
JA116_RS20445 2967334 .. 2967348 -  -5.6  -2.57795   TTCAGCAGCAACTTA               CGGGTT TCA ATCCCG               GTTTTCACACAATCC  52 134
        potE 2965028 .. 2965054 -  -7.3  -5.14563   CGCTGCAGGAAAAAA         TCCTCCCGC CGTAACTGC ACGGGAGGA         ACCCACCGGAGAGTG  90 45
JA116_RS14320 2964223 .. 2964254 -  -9.4  -3.32562   ATAAATGCCTTATAA      CCGGGTATATTCCG CAGA CAGAATAACCCCGG       ATAAAAACAGGGCTG  74 81
JA116_RS14315 2963648 .. 2963674 -  -2.3  -6.34424   GGCGGAAAAAAAAAA         TATTCTCACCG CCATC CGCTGATAATA         ATCCCCGCCCCGGCA  93 4
JA116_RS14305 2960834 .. 2960853 -  -2.8  -3.62849   CTGATTAAAGTATAA            CTATAGAG TTAA CTCCAGAG             TCAATATTATCAGAT  50 88
JA116_RS14300 NONE
JA116_RS14295 2960128 .. 2960149 -  -8.7  -4.43681   GATGGAACAGGAAAA           GCCGGAGTA AAGT TACTCCGGT            TATCTAAAAATACGC  93 29
JA116_RS14285 2958411 .. 2958422 -  -2.2   -4.7497   GCGATGCAGGAAAAA                GGCT GGAT AACC                 GCTGACGGAACCGCA  68 296
JA116_RS14260 2955639 .. 2955669 -  -2.3  -4.17316   AGCGCCGTAAAATAA       CCAGTCAGGGCGG TCACC CCGCCCGTTCTGC       TGCCTGAAAGGCGGA  55 8
JA116_RS14250 2954215 .. 2954228 -  -9.5  -3.29829   GACACCGCCTGAGAA               CCGCC TGCG GGCGG                CGCTGCGCCGGAGCA  74 270
JA116_RS14145 NONE
JA116_RS14140 2939254 .. 2939269 -  -3.2  -2.87274   GCGGAGAAGTAAGGA              TTTGGC GTCA GCCACA               GTATGTCCTGTGCAG  43 17
        sctV 2936965 .. 2936980 -  -5.4  -2.85061   ATAACCTGATAATCA              CCGGAT GAAT ATCCAG               CCTCATTAACGCCAG  50 154
JA116_RS14130 NONE
JA116_RS14125 NONE
        sctE NONE
        sctB 2933665 .. 2933680 - -11.8  -5.02231   TAAAAATAGCAAAAA              GGGCGC ATCT GCGCCC               TTTGGAATACAAGGT 100 50
JA116_RS14110 2933117 .. 2933129 -  -9.1  -2.79968   TATGCAACCTGAAAC                GCCTG AAA CAGGC                CATTTTCCGGCAGAT  67 108
JA116_RS14105 2931808 .. 2931851 -  -5.5  -2.89421   TCAATAATCAGCATA TACTCCTCCGGTGT-ATTCA GTGGA TAAACGATACCGGAGAAGTA TAACGGATTTGGCTG  50 53
JA116_RS14100 2931255 .. 2931276 -  -8.7  -2.93073   CCGCGTGAATAATCA           GGATTGCCG GGCG CGGTAATCC            GCCTGTGTGATTTTA  68 1
JA116_RS14090 2930472 .. 2930512 -  -3.4  -5.05782   AGTGATGTGAAAAAA CCGCTATCTCCCCTG AAGGCACAAAAA CA-GGGAGATAGCGT  TTCCTGTAACAGGAA  71 46
         eco 2928890 .. 2928905 - -10.4  -5.94214   AACAGAATAAAAAAA              CACGGC GGAT GCCGTG               TTTTATATGTCAGAA 100 50
        psiE 2928203 .. 2928213 -    -4  -3.40674   GGATCAGCCAAAAAT                 GAAA TTC TTTC                 TTATGCCAAAGAGAT  49 208
JA116_RS14060 2926459 .. 2926499 - -14.2  -3.81414   AGGTGCAACTAATAA CAG-ATAACCGTTGCGGAT TCAT ACCCGCAACGGTGATTCTG  TCAGAAGATAATAAT 100 40
JA116_RS14055 2925482 .. 2925493 -  -3.6  -4.11141   TTCTATATAAAAAGA                CGGA TATA CCCG                 GAGAGTCGGTATTGT  60 44
JA116_RS14040 NONE
JA116_RS14035 2921638 .. 2921653 - -10.4  -4.68124   TTAAGATACAGAAAA              GCCACC TGAC GGTGGC               TTTTTGCATTTATGA 100 268
        galE NONE
JA116_RS14005 NONE
        galK NONE
JA116_RS13995 2910545 .. 2910567 -  -2.6  -3.87075   ATGACGGCTCAGAAA           GCGTCCTG CTGACCC CGGAACGC           GTGATGCCCGCCGGT  54 107
JA116_RS13985 2909071 .. 2909098 - -11.4  -5.93809   GCGGGACAAAAAAAA        TGCTGCAAATTC AGAC GAATTTGCAGCC         TTCTAACAAAGTACC 100 89
JA116_RS13980 2906705 .. 2906744 - -13.6  -3.17571   AAGGCGGCAACCGAA  GGAAACCGGGGAGCATAC AATG GTATGTGACCCGGTTTCC   TGAGAGCAGCCAACG 100 69
JA116_RS13975 2905151 .. 2905180 - -10.2  -3.93288   TGTTATGGAAGGAAA       TAACAGAGGAAT ATGGGG ATTCCCCTGTTA        TTTTTGGTATTTTCA  89 65
JA116_RS13970 2903735 .. 2903754 - -13.6  -5.38054   CCGCAGAAACAAAAA            CACCGCGT ACTG ACGCGGTG             TTTTTCTATTTATAA 100 47
JA116_RS13960 2902359 .. 2902373 -  -8.5  -5.46706   ACCGGAAAAGAAAAA               GCGCC TTTAC GGCGC               TTTATCCGGGGATGA 100 43
JA116_RS13950 2899921 .. 2899937 -  -2.9  -4.16146   AAAACAGGCGGAAAA              TATCCGC AGA GCGAAAA              GCGGGATGCAGGTGA  60 305
JA116_RS13930 2893949 .. 2893960 -  -4.4   -3.6692   TTCCACCCCAAAACA                TAGG TATA CCTA                 CCATTTGTGATGTAA  54 449
JA116_RS13920 2893119 .. 2893139 - -11.1   -4.2349   GCCTGACACTCAAAA            GCCCCGC AATTTCA GCGGGGC            TTCGGTATATAGCCC  93 51
JA116_RS13905 2890104 .. 2890129 - -11.3  -5.14965   AGTGCCAGTAAAAAA         TA-AAGCCTCCG GAA CGGAGGCTTCTA         TCTGTCGTCAGGATT 100 42
JA116_RS13900 2889291 .. 2889308 -  -4.1  -4.39426   CATATTCTGAGAAAA             CCATCAC TAAT ATGACGG              TGTTACAGCATAAAA  63 80
JA116_RS13895 2888774 .. 2888790 -  -5.1  -4.63748   AAATAACGAAATAAA              CGGACAT TTT ATCTCCG              TAAAAAAAGGGTTCA  73 38
JA116_RS20440 2887864 .. 2887877 -  -2.4  -2.93466   AAAAATATTAATAAT               CAGA AGGCAG TCTG                GTTGTCTCAATGGGC  42 122
        catA 2887135 .. 2887161 -  -5.9  -6.18768   AAAAGATAAAAAAAA        GCCACCAT-TCC TTCC GGATACAGTGGC         TTAAATAAAGTATTA 100 47
JA116_RS13875 2884644 .. 2884684 -    -4  -3.75824   CACTCTATAACATAA  GCCGTCATATACCTTATC GGAAT GTTAAGGTATTTCAGGGC  TGCGCTGATACTCAG  57 37
JA116_RS13870 NONE
JA116_RS13865 NONE
JA116_RS13860 2882185 .. 2882202 - -12.7  -3.05596   CAGTGCCTGACTGAA             CGCCCGT TTTA ACGGGCG              TTTGTTTTTTTATTT  93 60
        zipA 2874853 .. 2874870 -  -9.8  -5.45726   TATACCTGAAAAAAA             CCCCCG TCATTG CGGGGG              TTTTTATGCGATTTA 100 47
        ligA 2872762 .. 2872781 - -12.2  -3.65902   CTGATGTGACTGAAA            CGGTCTTC CGCG GAAGACCG             TTTTTCATCATTGTT  93 42
JA116_RS13810 2872124 .. 2872146 -  -5.6  -4.21768   CAAGGAACTGGAAAA           TACACTGTCA TTA TTACAGTGCA           CATTGGTAGCGCAAC  67 396
JA116_RS13800 2871185 .. 2871203 -   -16  -3.87149   TCCACCAAATTCAAA             CCCCGGTC TCT GACCGGGG             TTTTTTGTTTCTGTT 100 46
JA116_RS13780 NONE
JA116_RS13775 NONE
JA116_RS13770 NONE
JA116_RS13765 2868749 .. 2868760 -  -2.2  -2.76189   CAACTGAGCTAACGA                CCCA TACC TGAG                 TGATGCGGGAGAATC  41 49
JA116_RS13760 2868648 .. 2868659 -  -5.8  -2.76189   CAACTGAGCTAACGA                CCCA TCTT TGGG                 ATTTTCTTTTCAGGA  53 42
JA116_RS13755 2868353 .. 2868376 - -12.4  -2.50346   AAGAAACAGAGATAT          GCCGCTCCGG GCTG CCGGAACGAC           GTCAGTATTGGTTAT  86 224
JA116_RS13750 2867141 .. 2867173 -   -10  -2.89069   AGTCAGAAAAACTGA     GTGATTCCGGTGGTG CGCT CACCACCGGAAT-AT      TATATCAGCAGAATA  72 62
JA116_RS13740 2866232 .. 2866245 -  -5.9  -5.24989   TCAGACATTAAAAAA               GAGGC CTCA GCCCC                TTTTCTTATTGCATC  86 67
JA116_RS13735 2865481 .. 2865491 -  -8.2  -2.76087   AATATATCGCCAAAC                 GCCG TCC CGGC                 CTCTATTTTATGTGT  60 141
JA116_RS13720 2863867 .. 2863884 -  -9.8  -2.62184   GGTGTCCTGACAGCA             GGCCGG TGTTAC CCGGCC              TGCTGTTTTCCTTAA  71 50
JA116_RS13715 NONE
JA116_RS13710 NONE
JA116_RS13705 NONE
        efeB 2860226 .. 2860244 -  -7.4  -3.60006   AAGCACAGGGTGAAA             CGTATCTG AAT CAGATGCG             CGCCACAATTCCGAC  66 231
        tdcB NONE
        tdcC 2855916 .. 2855937 - -15.9  -5.65513   GATTAAGCAAAAAAA           CCCGCACTC CGGT GAGTGCGGG            CTTTCCGTTATTAAC 100 52
JA116_RS13680 2855167 .. 2855188 - -10.1  -4.83243   GGGATATAAAATAAA           GCTGCCACC GGGG GGTGGCAGT            CAGAATATATTACGG 100 35
JA116_RS13675 NONE
        uvrC 2852229 .. 2852259 -  -3.2  -3.34043   GCCATTATTTTATAA       GTCAGATGAAAAAG CCG CTTGCGCATCTGCC       GGCACATATTACCGC  47 181
        pgsA 2851628 .. 2851661 -  -5.4  -4.77157   TTAATTCATGAAAAA     TGATCG-TTCGCTGT TTTTT ACAGCACATCGATCA     GGCTTCGCTCAAATC  75 23
JA116_RS13660 NONE
JA116_RS13655 NONE
JA116_RS13650 2851213 .. 2851229 -  -9.4   -5.4251   TTCAGACACAAAAAA              GCCACC GCAAG GGTGGC              TTTTCTTGACTCTAA 100 69
JA116_RS13645 2850406 .. 2850438 - -12.1  -3.81027   TTTAAGTAATTCAAA      CCAGCAATGAAGGGT TAT ACCCTTCATTGCTTT      ATATTATCAGCTGGT 100 204
JA116_RS13635 2846586 .. 2846603 -  -5.5  -5.40873   AACACAAAAAGAAAA             CCGGG CATTCTCC CCCGG              CATCATTATGCTGCA  84 42
JA116_RS13630 2846238 .. 2846256 -  -4.6  -3.29043   AAGTTCTCTCCACAA             TCTCTGAA CAA TTCAGATA             ATATTTCATTAATCC  53 34
JA116_RS13625 2845707 .. 2845731 -  -8.6  -5.59879   TAGAAACACAAAAAA          CGGCATATCT GAAAA AGAGATGCCG          TAATTATTATTGAAT 100 43
JA116_RS13620 NONE
JA116_RS13615 NONE
        csy3 NONE
       cas6f 2842101 .. 2842116 -  -5.4   -4.5442   GCTTTAATGATAAAA              CCG-GCA ATC TGCACGG              TACGCCAACCGAATT  72 273
JA116_RS13595 2839634 .. 2839660 - -10.2  -3.53444   GTACCGGCCCGGAAA         TGCTGCCATGGA TTA TCCATAGCAGAA         CTCAACGCCGGGCTC  80 11
JA116_RS13590 NONE
JA116_RS13585 2836708 .. 2836725 -  -2.7  -2.94924   GCCGGATGGATAAAC             GTCAGCCG CAT CAG-TGAC             TGCCTGATTTTGCCG  43 18
JA116_RS20420 NONE
JA116_RS20415 NONE
JA116_RS13575 NONE
JA116_RS13570 NONE
JA116_RS13565 NONE
JA116_RS13560 NONE
JA116_RS13555 2830363 .. 2830390 -  -9.8  -4.59414   GCAGAATAACGAAAA        GCATCCGTGCCA TGGA TGGCACGGCTGA         GCTTACAGGGATGTA 100 104
JA116_RS13520 2823539 .. 2823556 -  -3.4   -3.6269   GGACTGACATAAATA             GGTCTG TACTTC CAAACC              AATGCCGATATTAAG  51 105
JA116_RS13515 2823125 .. 2823140 -    -9  -5.71712   CCGGACATAAAAAAA              CCTCAC CGGA GTGAGG               TTTTTAAAATCTGTG 100 56
JA116_RS13510 2822295 .. 2822328 -  -3.6  -2.84229   ATAGCCGGAGTAAAT     CTGCCCGTCTGCCG TTATTC CGGCTTGCGGGCAC      TAAGCAGAAAGATCA  45 6
JA116_RS13470 NONE
JA116_RS13465 2816971 .. 2816989 - -14.6   -3.0782   TAACCCCCGAAGAGA             TTGCCGGG AAT CCCGGCAA             CGGAGAAATACATCT  93 232
JA116_RS13455 2816097 .. 2816108 -  -7.2  -5.60993   CCGGGTACAAAAAAA                CCGC CGGA GCGG                 TCTGTTTGGATTTCG 100 108
JA116_RS13450 2814974 .. 2814995 - -13.1  -4.24204   CACGGATAGCGAAAA           CCCTGTACT GAAA AGTACAGGG            CAGGATTATTGGTAA 100 294
JA116_RS13385 NONE
JA116_RS13380 2806341 .. 2806363 -  -6.9  -3.06501   TATAGCGCGACCGAA           GCCGGAGGC CGTAT ACCTTCGGC           TTCACCCTTTCTGGT  58 27
JA116_RS13375 NONE
JA116_RS13370 NONE
JA116_RS13365 NONE
JA116_RS13360 NONE
JA116_RS13355 NONE
JA116_RS13350 2803612 .. 2803625 -  -3.1  -3.56273   TTTACCACCACAGAA               TGGAC AGGT ATCCA                GTGGCTGCCAGTGCG  49 246
JA116_RS13340 2803248 .. 2803266 -  -8.1  -3.18264   CTCTCCACTCATTAA             GCGCAGC CGTAT ACTGCGC             GTTTTACATCGGGAC  63 44
JA116_RS13335 2802438 .. 2802453 -  -4.6  -2.57067   TTAACAGGTAATTCA              TCAGGC CACC GCCGGA               GTCATCATCAGTGCC  48 10
JA116_RS13330 NONE
JA116_RS13325 2800647 .. 2800662 -  -8.2   -5.4833   CCAGGCAATAAAAAA              CCCCGC GATT GCGAGG               TTTATATACAATTAT 100 77
JA116_RS13320 NONE
JA116_RS13315 2799134 .. 2799149 -  -8.2  -4.40358   ATTTAGGGCATAAAA              CCCCGC AAAT GCGAGG               TTTCAGTTTATAAGC  82 33
JA116_RS13310 2798575 .. 2798591 -  -7.2  -5.21709   GCGTATATGAAAAAA              GGCCGC ACAGG GCGACC              TTTGGTAATTTATAT  90 51
JA116_RS13305 NONE
JA116_RS13300 2797202 .. 2797220 -  -9.5  -5.10461   TGCAGGCAATAAAAA             GCCCCGC GTTAT GCGAGGC             TGAAAATTTTATTCG 100 50
JA116_RS13295 NONE
JA116_RS13290 NONE
JA116_RS13285 NONE
JA116_RS13280 2795602 .. 2795622 -  -4.1  -2.76189   CAATCGATTTAACTA            TACCATAAC AGT ATTATGATA            ATGACATTGCATAAT  46 66
JA116_RS13275 2794907 .. 2794927 -  -9.7   -5.4833   TTATCGAATAAAAAA            GCCAGCTTA GTG TGAGCTGGC            TATATATAGAAAACA 100 78
JA116_RS13270 NONE
JA116_RS13265 2793681 .. 2793695 -  -5.7  -3.42364   ACCGAAGACAGAAGA               CAGGT AAGAG ACCTG               GTATTCAGGATTGCC  56 115
JA116_RS13255 NONE
JA116_RS13250 NONE
JA116_RS13245 2790041 .. 2790086 -  -4.5  -3.01924   TACCGGCCGGTAACA GGCACCCACCGCATTATCCAG GACA CGGGTTATTGAGCCGGATGCC CAGCCGTCATTCCGT  50 254
JA116_RS13235 NONE
JA116_RS13230 NONE
JA116_RS13225 2786753 .. 2786790 -  -9.1  -4.36914   GTTTCTCGTATAAAA   GACGTCACAATGCCTGC CATA GCTGACATCAGGACGTC    TGTATTAAAGGGAAG  86 42
JA116_RS13220 NONE
JA116_RS13215 NONE
JA116_RS13210 NONE
JA116_RS13205 NONE
JA116_RS13200 NONE
JA116_RS13195 NONE
JA116_RS13190 NONE
JA116_RS13185 2782022 .. 2782038 -  -7.9  -2.62184   GGCTTTTTGACAGGA              GCCACGC ATC ACGCGGC              CCCCACCGGTAAAAA  60 84
JA116_RS13180 2780033 .. 2780064 -    -8  -3.57651   GCCCACACCACACAA      CTCAGCACCGGATAG CCC CT-TCCGGGGCTTAG      TCACGGCATATTCAT  70 26
JA116_RS13175 NONE
JA116_RS13170 2778572 .. 2778599 -   -15  -3.12668   TAGTGTCAGAGCCAA        CAAAAAACCCGC CGGA GCGGGTCTTTTG         AGGATTAGCAAGAGT 100 47
JA116_RS13165 2776638 .. 2776648 -  -8.2  -2.73994   AGCCGTTCAATACCA                 CGGG TAA CCCG                 GACACTGTCCCAGCC  64 101
JA116_RS13155 NONE
JA116_RS13150 NONE
JA116_RS13145 NONE
JA116_RS13140 2772857 .. 2772873 -  -2.9  -4.30719   TTTTTTCATAACAAA              GCCTCAC TCA GTGAAGG              TGATAATTAGTCGTT  59 53
JA116_RS13135 NONE
JA116_RS13130 2771119 .. 2771134 -  -6.8  -4.37067   CAAAGATGATGAAAA              GGCGCT GTTA AACGCC               TGGCTGGATTATCTG  75 81
JA116_RS13115 2769316 .. 2769332 -  -3.7  -3.52113   ACCTTGCCATAAAGA              TTGGTGT CTC ACAGCAA              CAGGTATCGCGCTAT  51 226
        yejK 2765048 .. 2765069 - -14.5  -3.73775   GGGACGCCGAGTAAA           TAACGCCGC TTTT GCGGCGTTA            TTTATTTCTGCTCTA 100 42
        rsuA NONE
JA116_RS13065 2760599 .. 2760627 - -12.5  -4.11404   CTGATATTACAGAAA       TGACCGGTCCGG CAAATT CCGGACCGG-CA        GAAGAGAAAGGAAAT 100 40
JA116_RS13060 2759706 .. 2759735 - -10.9  -4.68593   TGTATTATTTAAAAA       GAAAAAGCTTCCT TTTC AGGAAGCTTTTTT        TATATCTGCATTTTA 100 75
JA116_RS13045 2757298 .. 2757340 -  -2.1  -4.89054   GGCACAAAAAAAGAA GCGAAAACCG-GTATCGT GATGTGGT ACGTCACACGATTTTCAC CGGTTTCTCCGGTAT  66 67
JA116_RS13040 2756729 .. 2756747 -  -7.4    -5.055   GTAACGGTGAAAAAA             TCCGCATT CAT ATTGCGGA             ACGTCGTTATATGGG  91 144
        fruK 2752945 .. 2752998 - -13.1  -3.80461   GAATTTATTATGAAA GATAACCGGTTTGACGGCATCCCGC TGGT GCTGGAAACCGTGAATCCGGATATC TGGGCACAGGAAATT 100 74
JA116_RS13005 2749905 .. 2749944 - -13.6  -2.57344   CACCCGGCTTATAAT  TGCCTCCGCTGCCCGCCGG AAA CCGGCGG-CAGAAGAAACA  GATGCCGCATCAGCG  93 35
JA116_RS13000 2748229 .. 2748247 -  -9.6  -6.15717   TAAACATAAAAAAAA             CCTGACCA ACA TAGTCAGG             TTTTTTATCAATTTA 100 63
JA116_RS12995 NONE
JA116_RS12990 NONE
JA116_RS12985 2744848 .. 2744882 - -16.7  -3.64198   GCGGCATACAGATAA     TCATTCTCTGCGGAA ATATA TTCCGCAGAGAATAA     AAAAGAATATGTAAT 100 55
JA116_RS12980 2742603 .. 2742628 - -11.8  -5.93809   CTGCCATAAAAAAAA         TACGGCGCCC GGGAAA GGGCGCCGTT          TTTCGACACATAATA 100 57
JA116_RS12975 2740643 .. 2740669 - -15.2  -5.71712   TTGCATATAAAAAAA         CGGCGCACAG AATCAAA CTGTGCGCCG         TTTCCGGGATAAAGA 100 53
JA116_RS12970 NONE
         dld 2737872 .. 2737893 -  -9.5  -5.33921   AAATTAATGAAAAAA           TCCGGTTAC AGAC ATAACCGGA            TTTTGCAGATTTTTA 100 54
JA116_RS12960 2737456 .. 2737480 - -15.7  -3.06361   GAGTAAGCAGACAGA          CCGCCGGGAGC AGC GCTCCCGGCAA          TAATATTATCCCGCT 100 31
JA116_RS12950 2735379 .. 2735400 - -10.9  -6.15828   CTCAGTAAAAAAAAA           CCGCGAATG CTGC CATTCACGG            TTTCTGTGGTTCTGA 100 49
        rluC 2730617 .. 2730633 - -10.8  -5.64304   CAATATAAGAAAAAA              CCCGCG TTCGT CGCGGG              TTCTTTATAACGGGG 100 53
        yceD NONE
        rpmF NONE
        plsX NONE
JA116_RS12910 NONE
        fabD NONE
        fabG 2724901 .. 2724913 -  -4.8  -3.15027   ATTTCCTATCAAAAC                TCGC TATAT GCGA                TGGTTTTCGTAGTTT  51 145
        acpP 2724604 .. 2724627 - -12.4  -4.96996   GGGAAATAAAAGAAA          CAAGGCGGTC GGGT GACCGCCTGG           ACATGAGGGATGCTT 100 39
        fabF 2723291 .. 2723305 -  -8.5  -6.38039   CAGGTAAAAAAAAAA               GCGCC GTCAT GGCGC               TTTTTCCTCAGAAAA 100 46
        pabC NONE
        mltG NONE
         tmk NONE
        holB NONE
JA116_RS12865 2718839 .. 2718849 -  -3.2  -2.84098   TCCTGTAATTAATCA                 GCCT GAC AGAC                 GGGTCCGTATTTACC  43 36
        hinT 2718435 .. 2718445 -  -3.2  -4.64591   CAATCACACATAAAA                 GACG TTT CATC                 ACAATTCTCCTGTCC  65 46
        lpoB NONE
JA116_RS12850 NONE
        nagZ NONE
        ycfP 2715407 .. 2715427 - -10.4  -5.42259   TGAGGCGTAAAAAAA            CCGCGCCT TCAGC AGACGCGG            TCATTTTACTGATAT 100 40
JA116_RS12835 2713667 .. 2713684 - -11.3  -5.28176   CTTACGGATAAAAAA             TGACGCC CAGA GGCGTCA              TTTTTAGCAGAGATC 100 44
JA116_RS12830 2712608 .. 2712618 -  -5.4  -3.86252   GCGGATGAAAGAGAA                 CCAT ATT ATGG                 TCGGCCGTGAATTTC  63 223
        lolC NONE
        lolD 2705826 .. 2705854 -  -4.6  -2.50935   AGCGCAGTCAGTAAT       GACAGCGGTAATG CATT CAT-AGCGCCGTC        TCCGGCTGTGCATTC  47 13
        lolE NONE
        cobB NONE
        pepT 2702287 .. 2702306 -   -10   -5.4833   TTATTTAATAAAAAA            GCCACCTC TATT AAGGTGGC             TTATTGATATTTAAT 100 56
JA116_RS12790 2701507 .. 2701526 -  -2.8  -3.14132   TGCCGCCGGTATTAA            CAGTTACT CGTA AGAAACCG             TATAATTAATAGTTG  44 9
JA116_RS12785 NONE
JA116_RS12780 NONE
JA116_RS12775 2697290 .. 2697311 - -10.1  -4.96848   CCGTTCAGATAAAAA           TGCCACGTG ATAT CACGTGGCG            TTTTTTTTTACAGAT 100 33
         icd 2687793 .. 2687812 - -12.2  -5.27779   CTGAACAGTAAAAAA            CGGGAACT AATA AGTTCCCG             TTAATTATTTCACTG 100 50
JA116_RS12715 2683744 .. 2683754 -    -4  -3.21416   TACCCTGACCACCAA                 CTTT AAA AAAG                 CCAGGGATAAAACCG  47 328
JA116_RS12680 NONE
JA116_RS12675 2679066 .. 2679088 - -12.7  -3.05596   TATGGCGCGATCGAA           GCCGGGAGC CGTAT ACTCCCGGC           TTCACCCTTTCTGAG  93 27
JA116_RS12670 NONE
JA116_RS12665 NONE
JA116_RS12660 2677752 .. 2677763 -  -2.2  -3.53761   CAATTCGGGTGTAAA                GCAT CATC ACGC                 AGCCTCCCGTTCTTT  47 20
JA116_RS12655 2677343 .. 2677361 -  -8.1  -3.14132   CTCTCCGCTCATTAA             GCGCAGC CGTAT ACTGCGC             CTCACATCGCCAGAC  63 27
JA116_RS12650 2676529 .. 2676544 -  -4.6  -2.57067   TTAACAGGTAATTCA              TCAGGC CACC GCCGGA               ATCATCATCAGTGCC  48 10
JA116_RS12645 NONE
JA116_RS12640 2674972 .. 2674987 - -10.4  -5.82172   ATCAACATAAAAAAA              CCCCGT AAAA ACGGGG               GTTTCAGTTCATAAT 100 83
        cspA NONE
JA116_RS20390 2673949 .. 2673966 -  -9.1   -5.4492   TAGAGATATAAAAAA             GCCCCAC CGAA GTGAGGC              TCATAATTCTTCAGT 100 367
JA116_RS12625 2671329 .. 2671350 -  -3.7  -4.88407   TCAGGCAATTAAAAA           TGCAGCATCA TAT TG-CGCCGCA           CAAAACAAGGCTGTA  76 67
JA116_RS12615 NONE
JA116_RS12610 NONE
JA116_RS12605 NONE
JA116_RS12600 2668795 .. 2668813 - -13.2  -4.24887   AATACAGGCAATAAA             TAGACCGC AGG GCGGTCTA             TTGAAGTGTTGCTGT 100 491
JA116_RS12595 2668336 .. 2668349 -  -9.5   -5.4505   TTCCCCAATAAAAAA               CCCGC CGGA GCGGG                TTATGTATTTGTTAC 100 37
JA116_RS12590 2667840 .. 2667858 -  -5.2  -3.06696   TCTCCTGTTAATACA             TGCTGGGG GAA CCCCAAAA             AAAGTTTTCTAACCT  52 130
JA116_RS12585 NONE
JA116_RS12580 NONE
JA116_RS12575 NONE
JA116_RS12570 NONE
JA116_RS12565 NONE
JA116_RS12560 2662314 .. 2662329 - -10.4   -4.0896   AAACCCTCCGGAAAA              GCGGCA TCTC TGCCGC               CGTAATTAATCAGCC  91 35
JA116_RS12555 NONE
JA116_RS12550 NONE
JA116_RS12545 NONE
JA116_RS12540 2660861 .. 2660874 -  -8.1  -5.71983   GTAAGCATAAAAAAA               GCTGC CGCA GCAGC                TTGTTGTTCAAGATT 100 44
JA116_RS12535 NONE
JA116_RS12530 NONE
JA116_RS12525 NONE
JA116_RS12520 NONE
JA116_RS12515 NONE
JA116_RS12510 NONE
JA116_RS12505 2654595 .. 2654608 -  -3.7  -5.42259   TCACCCGTAAAAAAA               GCCGC CGGA GCGGG                TCATATCAGTTGCTC  84 26
JA116_RS12500 NONE
JA116_RS12495 NONE
JA116_RS12490 NONE
JA116_RS12485 NONE
JA116_RS12480 2649531 .. 2649542 -  -7.2  -6.30182   TCAGACAAAAAAAAA                CCGC CGGA GCGG                 TTATTGTTATTATTC 100 35
JA116_RS12475 2648470 .. 2648485 -  -3.2  -3.18582   CACCGTAGTTAGGAA              GGACTA TCCT TTGTCC               AATATCCCCGGAATA  46 417
JA116_RS12470 2647665 .. 2647702 -  -3.6  -4.61868   TATTTATATATAAAA   TAAGAATTCAATATGG AATCAA CCACATCATATTCTTA    AAAAAACATTCTGCA  67 170
JA116_RS12460 2645869 .. 2645900 -    -6  -2.81888   CTGTAAACTTAATTA      CATGTGTTTGATGAT TGC ATCACCAAACTC-TG      AGCATTTCAGTAGTT  53 493
JA116_RS12435 2641528 .. 2641543 -    -9  -5.97575   AATGTATAAAAAAAA              TCCCGT AAAT ACGGGA               TGTTAGCTGATAGGT 100 62
JA116_RS12430 2640718 .. 2640751 - -14.9  -3.21276   TTTCGGCTGATAACA     CAAAGCAGGA-AAAAC CAC GTTTTATCCTGCTTTG     TCAGCAATCTCAAAG 100 201
JA116_RS12415 2638632 .. 2638653 - -11.5  -2.52516   CCTTCCATTATTAAT           TTGCCCGGC AATA GCCGGGCTA            TTTTTTCTTTTCAAT  79 136
JA116_RS12410 2637960 .. 2637985 -  -6.9  -4.51174   TTAGTACAATTAAAA         GCCAGCTT-GCA ATA TGTTAAGCTGGC         ATTATAGTGTATTTG  76 114
JA116_RS12405 2637288 .. 2637317 - -13.1  -4.82901   CTGCGCGGACAAAAA       TTATAACC-CCCGT GAA ACGGGCGGTTATAA       TTCTGCTTATTGATC 100 45
JA116_RS12385 2634214 .. 2634225 -    -3  -4.51224   AATAGTAATAATAAA                GTAT ATGT ATAC                 TAAAAGTACCACGTA  63 51
JA116_RS12380 2633641 .. 2633654 -  -5.3  -3.19563   CATATACCAGCAATA               GCAAT CAAC ATTGC                CTTATGGAATCTATT  53 45
JA116_RS12375 NONE
JA116_RS20385 NONE
JA116_RS12370 NONE
JA116_RS12365 NONE
JA116_RS12360 NONE
JA116_RS12355 NONE
JA116_RS12350 2627314 .. 2627335 -  -4.5  -5.02476   ATACTCCTGAAAAAA           CACATACGT CAAA ACATATGTA            AATAAAAAACTATCC  77 343
JA116_RS12345 2626931 .. 2626954 -  -6.7  -5.54192   ATTAATTTAAAAAAA          TCAGCCGGA ACAACA TCCGGATGA           TGTTTTATCGGTTAT  91 30
JA116_RS12340 2625391 .. 2625403 -  -2.7  -4.69027   AAATGTAGTGAAAAA                TAACA TAC CGTTA                TTAACTGATAATACC  64 155
JA116_RS12335 2624822 .. 2624832 -  -5.4  -3.62354   CCTGCAAATCAAAGA                 TCAG ACG CTGA                 AAATTTGACATTGGT  59 116
JA116_RS12330 2624501 .. 2624521 - -10.4  -5.27938   AGTCTGAAACAAAAA            GCCACCGG ATAAA CCGATGGC            ATATAAGGGAAATTC 100 39
JA116_RS12325 2623958 .. 2623991 -  -2.5  -4.73912   ATAAAAACCATAAAA     GATAATT-CCCGATGA TAT TCAGCGGCCAATCATC     AGTAAATACGGGGTC  64 10
JA116_RS12320 2623619 .. 2623642 -  -7.5  -5.55855   CGTAAAAAAAGAAAA          GGCTCACTGA TGTGT TCAG-GAGCC          TTATTAATTCTGCTG  95 47
JA116_RS12315 2622379 .. 2622397 - -14.6  -5.00616   CCGGGCCGTAAAAAA             CCTCCCGT CAT ACGGGAGG             TTTTCCTTTCGTCTT 100 312
JA116_RS12295 NONE
JA116_RS12290 2618919 .. 2618943 - -15.7  -3.32159   TGACAGCAAACTTAA          GCGTGCCGGAC ACC GTCCGGCACGA          TTTCTCACTCCTGAT 100 30
JA116_RS20380 2617375 .. 2617399 - -10.8  -2.95448   ATGAACAGTGACAGA          TAAACGCCGG GGCCA CCAGCGTTTA          TCACATTATCCGACC  79 31
JA116_RS12265 2615297 .. 2615313 -  -4.4  -2.89191   TGACATGCTCATATA              CACTCC CTTGC AGAGTG              TTCCGTAAATATTAT  46 78
JA116_RS12260 NONE
JA116_RS12255 NONE
JA116_RS12250 NONE
JA116_RS12245 NONE
JA116_RS12240 2613498 .. 2613517 - -11.4  -5.43414   ATCAGATATAAAAAA            GCCCCGCT ATTT AGCGAGGC             GCTGTTTTTAGTATA 100 464
        dsdX NONE
        dsdA 2608772 .. 2608782 -  -8.2  -3.02639   AGCCGGAAATAATCA                 CCGG ATA CCGG                 AACCGGCATTTATAG  65 77
        mlaA 2606967 .. 2606987 - -14.1  -5.76633   GCATACATAAAAAAA            GTTCTGGTC AGT GACCAGAAC            TTTTTTTTATCTTTT 100 56
JA116_RS12195 2604925 .. 2604947 -  -9.8   -5.5074   GAAGGTAATAAAAAA           GGCCCCCG TATTTAC CGGAGGCC           TGAATTCAGTTTGCG 100 56
        fadI NONE
        fadJ 2601189 .. 2601203 -   -10  -2.63596   CGTCAGGGGAGATGA               GAGGCA TTC TGCCTC               AAATTAATCATAATT  71 130
        sixA 2600314 .. 2600324 -  -2.4  -5.06451   TATGAGCTGAAAAAA                 CTGC GGC GCGG                 GGATTATGTGCCGGA  74 303
        prmB NONE
        aroC 2597730 .. 2597750 - -11.1  -4.63932   TACCTGCCAATAAAA            TCCCGGGTA CAA TACCCGGGG            ACGCCAGTTTAAATC 100 39
JA116_RS12160 2596918 .. 2596928 -  -6.8  -4.52042   ATAAAAATTAAGAAA                 GCTG AGA CAGC                 CACGTACTGATAGTA  76 7
JA116_RS12155 2596342 .. 2596352 -  -6.8  -3.64703   CGTTTGTCAGGCAAA                 CGGA TCT TCCG                 GCCATGGAAATTGGT  65 6
JA116_RS12150 NONE
JA116_RS12145 2595441 .. 2595460 -  -4.2  -5.72622   GCCATAAATAAAAAA            GGCCGC ATACCGGA GCGACC             TTTTCTTTTTACGTG  90 56
JA116_RS12140 2594755 .. 2594782 - -17.2  -5.93809   TTTGCATAAAAAAAA        GGATCATCAGCA TTGC TGCTGATGATCC         ATGATCGTCTCTGCT 100 79
        fabB 2589941 .. 2589964 - -13.9  -5.09259   TACTGCAAAAGAAAA          TGCCCCGGT GATTAA ACCGGGGCA           TTTATTTGATAATCA 100 49
JA116_RS12120 2589548 .. 2589561 -  -9.5  -4.96848   GGCGGGATATAAAAA               CCGCC GGGT GGCGG                TTATTGTAATAAAAA 100 64
JA116_RS12110 NONE
        pdxB 2585671 .. 2585694 -   -11  -5.06414   TCTCCGGAACAAAAA          CTGCACCGCA TCAG TGCGGCACAG           TCAGAAAAAATGATG 100 62
JA116_RS12100 NONE
        truA NONE
JA116_RS12090 2583059 .. 2583080 -  -8.7  -3.73224   TTATCTGCCATTAAA           CCACATTGC TTAT GCACTGTGG            ATAAAAAACTGCTCA  75 47
        accD NONE
        folC 2580762 .. 2580772 -  -2.4  -2.64803   CGATTCTGAAATTTA                 CTGG CCA CCCG                 CACCTTCCTTCGCTA  40 12
        dedD 2580015 .. 2580047 -  -8.6  -4.64861   CTGTCCGAAAATAAA     TTGCGGCGA-AATAA AAAA TTATAATCGCCGCAA      AGAGTTAACTGATTT  91 73
        cvpA 2579386 .. 2579397 -  -2.2  -3.47383   ACGATACCAACAATA                CCAC ACAT GTAG                 TTTTTTCCTCATCAG  47 37
        purF NONE
JA116_RS12060 2577219 .. 2577256 -   -15  -3.21099   CCGGCGGACTATTAA   TGCAGATCCCGGCCGGT GATAA AACGGCCGGGAT-TGCA   GGTTACGGCTGTGCG 100 28
        yfcD 2575437 .. 2575453 - -12.3  -5.56264   TTTAAATATAAAAAA              GCCTGCA TAT TGCAGGC              TTTTCCGGTTTTTAT 100 47
JA116_RS12045 2572838 .. 2572862 - -17.1  -3.93398   AGCCACAGACAATAA          TCCCGGCCGGG TTT CCCCGCCGGGA          TTTTTTTACTGTACA 100 150
JA116_RS12030 2568519 .. 2568555 -  -9.4  -3.70925   CGATTAATAAAGGAA   GCAGTTATACCGCCCGC GGAA ACGGGCGG-AAAACAGC    GGCACTTACAGGTCA  78 31
JA116_RS12025 NONE
JA116_RS12020 NONE
JA116_RS12015 2564883 .. 2564893 -  -6.8  -3.96327   ATTCGTCAGGAGAAA                 CGGT TGC ACCG                 TCCGTGGTACAGAGG  68 336
        hexA 2561182 .. 2561204 - -16.3  -5.40625   AGAGGATACAAAAAA           GCCGGGGGA AATTA TCCCCCGGC           GGTGTGTCTGACTGT 100 79
JA116_RS11990 NONE
JA116_RS11985 2559400 .. 2559422 -  -3.4  -2.52896   TCAGGGTTCAATGGA           CGCAACACAT TGC AAATATTGCG           CCCGGTGGCCCGAAA  42 44
        nuoC NONE
        nuoE NONE
        nuoF 2555627 .. 2555641 - -11.4  -3.05046   GCATGCTTCCAAAAG               GCCTGC TAT GCAGGC               GTTAAACGAAAAATC  83 50
        nuoG NONE
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL 2548630 .. 2548648 -    -3   -3.1867   AGGGAAGTAAAATCA             GCCAGGGT AAT AGCATGGC             GCAATGTGTCCCTTA  46 42
        nuoM NONE
        nuoN 2545621 .. 2545640 - -10.6    -5.626   TATGGCATAAAAAAA            CCGGGCTG ACTG CGGCCCGG             TTTTTCTGTCAGAAC 100 46
JA116_RS11915 NONE
        menD 2540099 .. 2540112 -  -3.1  -3.28712   GCTGTGCCGCCAGAA               CCGTCA TTG TG-CGG               CCTCACGTACCAGTT  47 15
        menH NONE
        menB NONE
        menC NONE
        menE 2536053 .. 2536087 - -15.8  -2.80074   CGTGTGATAACATGA     CAAAACCGCTGCCGTC AGT GACCGCAGCGGTTTTT     TTATATGAACTCAGC 100 36
JA116_RS11880 2533715 .. 2533731 - -12.3  -5.71712   TCTTATATAAAAAAA              CCCGTTC AGT GAACGGG              TTTTTTGTTGTCTGC 100 51
JA116_RS11870 2531931 .. 2531976 -    -2  -4.50976   GCGGACATTATAAAA GAGAACCGCAACCACAAAA AGGGAGAGA TTATGCGGCTG-AGTTCTC CTTTATTCAGAATCA  60 54
JA116_RS11865 2531366 .. 2531415 -  -9.9  -5.40072   CGCCGGGTAAAAAAA CACAGCTGCCGGCA-CGGAAAATC GCA GAAATTCCGGTGCCGGCAGCAGAT CCGTCATGATTTATC 100 274
JA116_RS11855 2528932 .. 2528949 - -12.7  -5.03994   TCCCATACAGAAAAA             CACCCGC AAAA GCGGGTG              TTATCGTCAGTTAAC 100 32
JA116_RS11850 2528111 .. 2528128 - -11.3  -5.31877   ACGCACGATAAAAAA             TACCCGC CGCG GCGGGTA              TTCAATTATGTATTT 100 39
JA116_RS11840 2526461 .. 2526471 -    -4  -2.89564   TTTTCACCTGACAGA                 TAAC AGG GTTA                 TTGTGTGCCGTATTT  46 23
JA116_RS11835 2525636 .. 2525655 - -10.7  -4.68593   CGCATGATGTAAAAA            GCCCGGT TCGCTG ACCGGGC             TTTTTTTTCGTTATT 100 184
        mgrB 2522470 .. 2522484 -  -4.2  -3.24879   GGGAAAAGGCAAAAC               TCAGCC CTT GTCTGA               CGGAATAAATTTCGT  51 11
JA116_RS11810 2520890 .. 2520906 - -13.7  -5.60689   TCAGACAATAAAAAA              CCGGGGA TTT TCCCCGG              TTTTTTATTGTCTGA 100 49
        cspE 2519445 .. 2519468 - -12.4  -5.49234   ACAGGCAATAAAAAA          CCCCATGCCC GCAA GGGCACAGGG           TCTGAATTTGCGTCA 100 132
        thiD 2518538 .. 2518551 -  -4.5  -3.08088   AAAGCGCGCAATATA               CACGA ATTA CCGTG                CGATATCACCACCAC  51 31
        rluF 2517516 .. 2517543 -  -9.8  -4.42238   GCAGGCGAACGAAAA        GCATGCGCGTCA TGGA TGACGCGCCTGA         GCTTACATGGATGTA 100 94
JA116_RS11770 2512789 .. 2512805 - -13.7  -5.29782   GACAGGGATAAAAAA              CGGCGGA ATA TCCGCCG              TTTATTGTTTTTCTG 100 58
JA116_RS11740 2502516 .. 2502543 -  -2.8  -2.74799   GACAACTTGGGAAAT        CTG-CCGACAT TTTAAGT ATGTCAGTCAG        GGCAGTGCAATATCT  42 56
JA116_RS11730 2501353 .. 2501372 - -13.6  -3.53779   CCGGTAAAACAGCAA            GGGCGGAT CATT ATCCGCCC             TTTTTCTTTCTGTCT 100 56
JA116_RS11700 2492856 .. 2492866 -  -2.4  -5.00884   ATTCCGCCCAAAAAA                 GGGG CAG CCTC                 AAAAGTCGGGCTGTC  71 168
         upp 2488448 .. 2488465 - -11.3  -5.79526   ATATGCCAAAAAAAA             GCCGACT ATCA AGTCGGC              TCATTAACTTATTTC 100 34
        uraA 2487077 .. 2487107 - -19.2  -4.03767   TGAATAACACAATAA       CACCGGAGAAGTAC TCA GTACTTCTCCGGTA       AAGTATTAATTGTCT 100 31
         hda 2486101 .. 2486115 -  -5.6  -4.36914   TGGCGCGGCACAAAA               CGGCTG TTC CAGCAG               GGCGCACTTTGCATG  70 86
JA116_RS11625 2477953 .. 2477982 - -17.9  -5.27779   TGTAACACCAAAAAA       CCCCGATAGCCGG TTGT CCGGTTATCGGGG        TCACTTCACTTCAGA 100 72
        dapA NONE
        bamC 2472930 .. 2472954 - -13.7  -5.75478   AACGACATAAAAAAA          TACCGGCCATT TAT AATGACCGGTA          TCAATAATTATTGTT 100 67
JA116_RS11595 2471688 .. 2471707 - -13.6  -4.66609   TAGCGGATGTAAAAA            CACCGGTC ATCA GACCGGTG             TTGCTTCATTTTCTT 100 15
JA116_RS11580 NONE
JA116_RS11575 2467826 .. 2467836 -  -8.2  -3.46144   ACAGGATTAATAATA                 GGCG TAT CGCC                 TGACGCAGATTATTC  71 140
JA116_RS11570 2467029 .. 2467060 -  -8.7   -3.6292   ATAAAGAGGCTTAAA      GCCGGTGATACGC GGGTCT GGTTATCACCGGC       AATGTATTCATTGAG  75 48
JA116_RS11565 2465996 .. 2466027 - -13.9   -4.0251   ACTATGATAATCAAA      CTCTGCCGGTTTT GCAGGG AAAACCGGCAGAA       CCATTTATTTCAGTG 100 30
JA116_RS11560 NONE
JA116_RS11555 2463386 .. 2463401 -  -4.6  -4.69464   AAAATACCTGAAAAA              CCGCAG GGAA CTGCCG               CCTCACCGCGACAAT  72 84
JA116_RS11545 2461922 .. 2461954 -   -17  -5.23292   GCAGAGAAAATAAAA      GCAGCCCGGTCGAT CTGAT ACCGGCCGGGCTGC      ATTCATTACGCTTCG 100 31
        vgrG NONE
JA116_RS11535 NONE
JA116_RS11530 NONE
JA116_RS20360 2456846 .. 2456885 -  -7.3   -2.7186   AAACTGCTCCAACCA GGTGATTT--TCCCTGCCC TTTT GGGCAGGAATTAAATCTCC  AGTATAAATATGATT  58 270
JA116_RS11520 2456317 .. 2456327 -  -2.6   -3.1733   TTCTTCACAAAATCA                 TAAT TTT ATTA                 TTTTTATTTTATAAA  44 70
JA116_RS11515 2455490 .. 2455511 - -10.9  -5.25699   ACTACATAATAAAAA           GGCCCGATA ATAT TATCAGGCC            CCGGAGTTTAGTCTT 100 193
        mdlC 2451916 .. 2451942 - -10.1  -4.37658   AATCCGGTGACAAAA         CGGCGCCCTGT TCCGC ACAGAGAGCCG         CTCAGGCGACTTCCC  93 81
JA116_RS11500 2450923 .. 2450936 -  -8.1  -2.70268   CTGGAATGAAAAATT               TGCGG GTAT CCGCA                CTGTGAATGATGCAG  57 489
JA116_RS11480 2448048 .. 2448077 -  -4.5   -3.3573   GAAATTACGCCACAA       GAAAATATCCAG CTATATC CTGG-TATTTTC       ACAATCACGGGAGCG  51 434
JA116_RS11465 2444524 .. 2444577 -  -4.7  -2.55019   AATGGGAAAAATTAT CATTCTCG-TTGTCGATACCTGAGTA AAT TACTAAGGTATTGGCAAACGACATTG CTCACATTGCTTCCA  47 90
        htpX 2443374 .. 2443398 - -16.5  -5.28778   AGCAGGTATAAAAAA          GGCTGCAACGC AGA GCGTTACAGCC          TTTTTATTATCCGGA 100 46
JA116_RS11440 2439443 .. 2439468 -  -9.8  -5.93809   TCCGGATAAAAAAAA         TACCCCGTCAG CAATC CTG-CGGGGTA         TTTTTTCAGATAACT 100 45
JA116_RS11410 2433447 .. 2433466 -  -8.5  -4.04206   TCAGTGTCAGAGAAA            GCCCGGC ATTATA GCCGGAC             TTCCCGCCGGGTACG  77 463
JA116_RS11405 2431677 .. 2431701 -  -3.5  -3.66178   TGCCGGAACTCGAAA          TCCATACTAGC ACA GCAAATAAGGA          TTAATAGGTTTATGT  53 184
        thrS NONE
        infC 2429001 .. 2429018 - -14.1  -4.63486   ATCCGGCGAATAAAA             GCCGGGG TTGC CCCCGGC              ATTTATTACTTGGAT 100 48
        rpmI 2428322 .. 2428339 - -11.3  -4.34402   TGCCGGACAGCAAAA             GAGGGAG CAAG CTCCCTC              TTCTGTCTGAGCAAT 100 438
        pheS NONE
        pheT NONE
        ihfA 2424276 .. 2424293 - -11.3  -5.23292   CCACAGAAAAGAAAA             CGACCTC ATAC GAGGTCG              TTTCAGGTCTTACTC 100 35
        btuC NONE
JA116_RS11360 2422318 .. 2422328 -    -4  -3.09933   CCTGAATTGATTCAA                 TTGA CGC TCAA                 CACCAGGGCTTCGTT  49 105
        arnB NONE
        arnC NONE
        arnA NONE
        arnD NONE
        arnT NONE
        arnE NONE
        arnF 2414821 .. 2414841 -  -8.3  -3.61106   TTAATAAAACACTAA            GCCGTATTA TGA TTATACGGC            GGGTTTTTCTTTACT  73 17
        arnT NONE
JA116_RS11315 2412205 .. 2412224 -  -4.2  -4.53475   ACGCCATAAAAATAA            TACGCGCT GGTC AGCGGGCA             TCTGACGGAAAATAC  66 164
JA116_RS11300 2409918 .. 2409931 -  -6.7  -3.65522   GACGTACTGCAACAA               TCCGT ACTG ACGGA                AACCTATCAGGCAAA  63 95
        ppsA 2401127 .. 2401144 -  -9.1   -6.2845   AATGATAAAAAAAAA             GCCCGAA ACAA TCCGGGC              TTTTAATCATTTAAA 100 50
JA116_RS11240 2395776 .. 2395818 - -14.3  -3.64198   CTTTTACAGAGAGAA GCCGGCGCAACGTGA-TTCC GGAT GAAATTCACACTGCACCGGC TGAAATGTTACTTAA 100 44
        sufA NONE
        sufB NONE
        sufC NONE
        sufD NONE
        sufS NONE
        sufE 2389807 .. 2389831 -  -9.2    -5.626   GATGGTATAAAAAAA          TACGTGGCCG TCTGC CGGCCACGCC          AGGTAATATATTATT 100 69
JA116_RS11175 2383554 .. 2383580 - -10.3  -5.45652   ATCCGTAATAAAAAA        TCCGGT-CTGAT AATT ATCAGCACCGGA         TTTTTTTATCTGAAT 100 45
JA116_RS11160 2379350 .. 2379362 - -10.5  -3.06796   CGTTACCTGATTGAA                CGCGG TCA CCGCG                ATATCGCGGTCATTC  72 517
JA116_RS11140 2377022 .. 2377043 -  -5.9  -3.66732   GAATCAGTTTAATAA           TTACGGGTA ATTA TACCGGTAA            TTTTCAGGATTGTAT  61 49
JA116_RS11135 2376187 .. 2376206 -  -2.9  -4.46212   GTTTTTATTATAAAA            CAGAAGAC GGGAT GTCT-CTG            CCGGTCACCCGGGTG  65 275
JA116_RS11125 2375099 .. 2375120 -   -13  -3.57406   GCCTGAGCAGAAATA           CGTCCCGC CGGTTT GCGGGACG            TTATATTACTACTCA 100 62
JA116_RS11115 2373739 .. 2373763 - -18.6  -4.85822   ATCAGAAAGACAAAA          GCCCCGCAGG TTTAC CCTGCGGGGC          TTCAATAAATAGTAC 100 50
JA116_RS11110 2372855 .. 2372887 - -17.9   -3.2981   GACAGTAATCAGTAA      GAAAACGCCACCTCA GAA TGAGGTGGCGTTTTT      ATATCAGTTATCCGG 100 29
JA116_RS11095 2370851 .. 2370894 -  -2.4  -5.05606   CCCAATAAAAAGAAA CGCGGCACTATTGTGTTCATT AAC AGCGA-CGCAATATTGCTGCG TAACAAAAACAGTTC  68 422
        slyA 2370303 .. 2370322 - -12.2  -4.11216   GGTTTACCGGTAAAA            GGCGAAAC ACCC GTTTCGCC             TTTTTTATTACCTGA 100 43
        anmK NONE
        pdxH 2367612 .. 2367634 -  -6.3  -4.01888   AGGCTATAGCATAAA          GC-GGCACTC CGTG AAGTGCCAGC           AATTAAAATGATTTT  67 67
        tyrS 2366231 .. 2366248 - -11.3  -4.84527   CTGACAGATCAAAAA             GGGCAAC TTTC GTTGCCC              TTGTTTACCGTAAAC 100 43
        pdxY 2365235 .. 2365251 - -13.7   -5.4492   TACAGAGACAAAAAA              CGCCGGA TAA TCCGGCG              TTTTCTTTATGCTGA 100 59
JA116_RS11055 2363291 .. 2363313 - -13.5  -2.84807   CTGAAATAAAGCAAT           CAGCCTCTG TATAG CAGAGGCTG           TGTTTTCTGCACGTC  93 191
        pspA 2355101 .. 2355116 -  -3.2  -3.18681   CCTTAATGGTATTAA              TTCAGG AAAG CCTGTA               CCGACCTTATTCGCC  46 32
        pspB NONE
        pspC NONE
JA116_RS11000 NONE
JA116_RS10995 NONE
JA116_RS10990 2351759 .. 2351789 -  -9.1  -5.24129   TTTTTGTATAAAAAA      GCCGGATG-ACATC ACAA AATGCACATCCGGC       CGGGTTATCGGTTAC 100 37
        tyrR 2349829 .. 2349854 - -17.5  -5.03314   CGTATCTGTAAAAAA         CCCCGCTGCCG GTGA CGGCCGCGGGG          TTATTTTTTTATTGC 100 50
JA116_RS10975 2347446 .. 2347468 -  -2.7  -4.36914   CCGTTGTTCATAAAA           CAGCTGA TGAGTGTGT TCAGCCG           GAGTCTGCCGCGTTC  59 64
        zntB 2346238 .. 2346258 - -10.5  -6.06723   TCGGGCAAAAAAAAA            CCGATGTAT AAA ATACACCGG            CATGATAATGGTCAA 100 205
JA116_RS10945 NONE
JA116_RS10940 2341137 .. 2341173 -  -8.2  -4.87665   TGCTATGCAGAAAAA   TAACGGTGCTGAATCAT AATA AT-ATTCAGCACCGCTG    ATACCGGTTTATTTC 100 34
JA116_RS10930 2339101 .. 2339122 -  -3.7  -3.82097   CTTAAACTGACCAAA           CCGGCTGTTA TTT TAAC-GCCCG           CCCTTCTTTCGCACC  56 11
JA116_RS10925 2338775 .. 2338801 - -12.3  -4.39426   GATATTCTGAGAAAA         GAGTACGGCGG CAGCC CCGCCGTATTC         CGTTTTCACAGTTTA 100 31
JA116_RS10915 2336391 .. 2336407 -  -4.4  -2.65223   CAACCGTATTATAAC             GC-GCGT TTTG ACGCTGC              CGGAATAGCATCAAA  45 2
JA116_RS10910 2335006 .. 2335028 -  -6.3  -5.43621   AGAAATCAGAAAAAA           TCCCGCA ATAAAAAGG TGCGGGA           TTATATTTATTTATG  91 36
JA116_RS10905 2334545 .. 2334562 -  -6.2  -3.25079   TAATACTGCACAATA             CCCGCC CCGGCC GGCGGA              AAAATGGAACTGATA  59 74
JA116_RS10900 2334239 .. 2334263 - -15.8  -3.62046   TGACGCCGTCAAGAA          CAGCCGCATC CGTGT GATGCGGCTG          TTCTGTATCAATCTA 100 38
        fadR 2330980 .. 2331006 - -15.2  -5.55769   GCTGACAATAAAAAA         CCGGCGCAGT TTTGTTC ACTGCGCCGG         TTTTTTATTGTGTTC 100 49
JA116_RS10875 NONE
         alr NONE
        hypF 2324840 .. 2324856 -  -5.1  -4.19336   AATCACCGCAACAAA              TGTTCGC GGG GCGAATA              TATTACGGTGAATGA  65 98
JA116_RS10860 2323990 .. 2324015 - -13.3  -5.64274   TCAGCCATAAAAAAA         CTGCACCGGAC AACA GTCAGGTGCAG          TTCTGTTATACCACT 100 47
JA116_RS10855 2323242 .. 2323265 -   -11  -3.14463   AAGTGCGCGGATTAA          CCGCCCTATG GCAC CACAGGGCGA           CAAACCGTCCCATCT  79 113
        msrB 2318919 .. 2318929 -  -5.4  -2.78596   TACGTTTTTATCACA                 TCAG AAG CTGA                 ATCGTTTTTTCTGTC  50 74
JA116_RS10815 2318335 .. 2318361 -  -2.8  -3.29461   CAACTGCTGGCAGAA         CAGCACATCACG CAT CTCGCGGTGCTG         GGGATCGCCACAGAT  47 263
JA116_RS10795 NONE
        selD 2313127 .. 2313140 -  -6.7  -4.67607   TCGGCAATAAACAAA               CGCAT GTTT ATGCG                GTGACTTCAATCAGT  79 19
JA116_RS10775 2308529 .. 2308556 -  -4.8  -3.84633   GATGTCGAAAAAAAC        GTACTCAGCC ATGCCCTG GGCCGTGTAC         TGACACAACGTGTAT  58 332
        rssB NONE
JA116_RS20345 2306018 .. 2306036 -  -4.5  -2.76456   AAAGTCAGGCAATTA             TCCCTGA TGCGG TCCGGGA             GTCAGACTTAATTTA  49 4
        galU NONE
JA116_RS10745 NONE
JA116_RS10740 2302514 .. 2302529 - -10.4  -5.36441   GCCGGACAGAAAAAA              GGAGGC TTTC GCCTCC               TTTTCTATACTTATA 100 55
JA116_RS10730 2300876 .. 2300893 -  -9.1  -5.71712   GCGGATATAAAAAAA             CCGGACA ATGA CGTCCGG              CACTTTTTTGTATAA 100 59
JA116_RS10720 2296671 .. 2296687 - -15.1  -4.70659   GCTCAGATGTAAAAA              CGGGGCC ATT GGCCCCG              TTCTGATAATAATGA 100 50
JA116_RS10690 NONE
        oppA 2287422 .. 2287443 - -17.3  -2.99545   GGTACACACTACACA           GGCCGCCCT TCGC AGGGCGGCC            AACCGTCGGTATTAT 100 37
        oppB NONE
        oppC NONE
JA116_RS10670 NONE
        oppF 2283496 .. 2283512 - -10.8  -6.17184   ATGATGAAAAAAAAA              GCGCCC TTACC GGGCGC              TTTGTCGTAAAAATA 100 62
JA116_RS10660 NONE
JA116_RS10655 2282354 .. 2282369 -  -6.8  -4.36914   GTTTCTGGCACAAAA              TCCGGC ATGT GCCGAA               GTGGTTATCGGCCTG  75 163
JA116_RS10640 2280103 .. 2280114 -  -4.4  -3.86634   ATAAGCAACTAATAA                TGAC AATG GTCA                 CTAGTGTAAATGCAA  57 103
JA116_RS10610 2273744 .. 2273757 -  -3.7  -5.21709   CGGGACAGGAAAAAA               CCGGC AGCG GCCTG                GGGTTATCTATCGTG  84 114
JA116_RS10595 2271207 .. 2271228 - -10.2  -5.03314   CGGATTGGTAAAAAA           TCAGGCCA ATAATA TGGCCTGA            TTATCCGGTGTGTTT 100 51
        ompW 2268443 .. 2268464 - -13.1   -4.9792   TACCGGATATAAAAA           TGGCGCAAT TATT ATTGCGCCA            TTTTTTATGATGCTG 100 54
JA116_RS10540 NONE
JA116_RS10535 2259492 .. 2259521 -    -3  -3.88001   CGTCATAAAAATCAA      CCGCAGCATTATAC ACAG GT-TAATGC-ACGG       CGCTAACGCATTTTA  53 62
        rluB 2258431 .. 2258455 - -17.3  -5.40474   ATCCCTGTAAAAAAA          CGTCCTGTGTT TTG AACACAGGACG          TTTATAAACGCGGAT 100 85
JA116_RS10525 2257345 .. 2257355 -  -8.2  -3.53761   CAACCGGGCCGCAAA                 GCCG GAC CGGC                 GGAGTAACAGAAGAC  71 48
        sohB 2255309 .. 2255332 - -15.4  -3.94402   ATAATCTGCAAAGAA          TAACGGCAGC TTTC GCTGCCGTTA           TTTATACTGCGCCGG 100 41
        topA 2252071 .. 2252094 - -16.8  -5.60993   TCCGGCATAAAAAAA          CCGGTCAGGA AAAT TCCTGACCGG           TTTTTATTATTGTGA 100 64
        cysB NONE
JA116_RS10495 2249945 .. 2249957 -  -7.7  -4.13014   GGGACACCGGTAAAA                TCCTG CAT CAGGA                CACGGGCGGGCCGGA  76 428
JA116_RS10480 2245883 .. 2245893 -  -8.2  -2.69468   TATCCGCACAGATTA                 CCGG CAA CCGG                 TTTCACACGGCCCAT  63 53
JA116_RS10475 NONE
        lapB 2244245 .. 2244257 -  -7.7  -2.75536   AAATTACGGCTAAAT                GTGAC GTT GTCAC                TGACCGTCCAGCCCT  61 22
        pyrF 2243449 .. 2243459 -  -3.2  -3.23393   GTCCATCTTATAATA                 CTCC CAC AGAG                 GCATTAATTGCCTGC  46 7
        yciH 2243079 .. 2243111 - -16.3  -3.55563   ACCGGAGTCGCTAAA      TACACAGGGCGTCCG CAA CGGACGCCCTGCTCA      CTGATCAGCCACCGG 100 30
JA116_RS10410 2232273 .. 2232286 -  -4.5  -4.46212   GTTTCCATCATAAAA               CCGAT AATC ACCGG                TGATAAGAAAACGCC  68 510
JA116_RS10400 2230554 .. 2230576 - -10.6  -5.24129   TTCCGTTACAAAAAA           GGCCTGATAT TTT ATGTCAGGCC           TTTTTTATTTTCTGA 100 41
        fumC 2224944 .. 2224962 - -14.6  -4.68424   GAAGTGATGTAAAAA             CGGAGCCA TCA TGGCTCCG             TTCCTGCTATATACA 100 62
JA116_RS10365 2220483 .. 2220495 -  -9.1  -2.96274   CTCCTGATAATCAGA                TCCGC TCA GCGGA                ACACATTGTTTTTCA  68 18
JA116_RS10360 2219388 .. 2219420 -  -9.9  -4.08216   GGACGCCCGCGAAAA      CCTAATCCCGGAAAC TCC GTTTCCCGGACCAGA      TGAGCATCCATCAGT  88 297
        bioD 2217490 .. 2217507 - -11.3  -4.77036   TTTGACCATGAAAAA             GGGCTGA TTTA TCAGCCC              TTTTGTATTTGACCG 100 46
JA116_RS10330 2215287 .. 2215306 - -12.2  -3.99236   CGCAGAAAAAACGAA            GCGGATAC TCCG GTATCCGC             TTTCTGTTTTATTCT 100 34
        prpR NONE
        alkB NONE
         ada NONE
JA116_RS10295 2206759 .. 2206794 -  -8.4   -4.7373   TCACTGGAGGAAAAA    CTGGCG-GCAGATTTAC AGC GTAAACCTGCACATCAG    AAACCGGCTCTGCAA  93 145
JA116_RS10270 2201564 .. 2201576 -  -9.1  -2.54634   TTTTACATCAGGAAT                GGCAG GAA CTGCC                GCAGTGGCAGACACC  62 421
JA116_RS10250 2198785 .. 2198797 -  -7.7  -5.71712   TCGCACAGAAAAAAA                CTGAC AAC GTCAG                CTGGTTGCAGGCATC 100 521
JA116_RS10235 NONE
JA116_RS10230 2194667 .. 2194686 -  -7.2  -3.27298   TCTGTTAATCAGTAA            TGCCG-TCA GCC TGACCGGCA            ACAGTTATGCCCATT  57 376
JA116_RS10210 NONE
JA116_RS10205 NONE
JA116_RS10200 2189149 .. 2189162 -  -6.7  -2.82834   GATTGTATTATTAGA               GGAAC AGCA GTTCC                GAGATATCAGTGATA  53 203
JA116_RS10175 2185030 .. 2185050 -  -6.7  -2.62515   AACCGCCTGACAGCA            GCCACCTGG TTG CCCGGCAGC            TGACCACTCAGACCT  52 447
JA116_RS10165 NONE
JA116_RS10160 2182536 .. 2182546 -  -4.6   -5.1485   GAATGAAGAGAAAAA                 CGCA CTG CGCG                 ATCCGGATTCCGCCG  81 218
JA116_RS10150 2180907 .. 2180923 -  -9.3   -3.2614   GATCCCGCAGATGAA              CGGCCGG GTG CTGGCCG              TATGGGGTGCGGAGG  67 312
JA116_RS10130 2176035 .. 2176075 - -11.2  -4.40572   ATAACCTGCATAAAA GACA-AGCAGCCTGTGGTG ATCA CACCACAGGCTGCCCTGAT  ATCTGACGTGTTAAT 100 45
         pip 2174584 .. 2174599 -  -7.6  -4.93365   GCTTATAATGAAAAA              GCAGAT CGTT ATCTGC               ACTTCTCTGATGCTC  90 428
JA116_RS10115 2172592 .. 2172605 -  -2.4  -3.01712   TTTCTTTTTTTAATA               CATC CGTAAT GATG                AGTTACTGACGGGAG  42 28
JA116_RS10110 2172038 .. 2172071 -  -9.6  -4.25104   CTCCCTGCAGGAAAA     TATCATGGCGGCAC TGGCCT GTTCCGCCATGGTA      CTGATACTGGTTTCC  82 56
JA116_RS10100 NONE
JA116_RS10095 2169386 .. 2169409 - -11.6  -2.50016   TGGTATCAGGAATAT          CCGCCGCCGG AAAC CCGGCGGCAT           CCGGGGTAAATGACT  79 39
JA116_RS10090 NONE
JA116_RS10085 2165424 .. 2165435 -  -4.4  -4.11748   TGGATAAATAAAATA                TCTG TCCG CAGA                 CTCAGGATTTGTTCA  61 317
JA116_RS10070 2162374 .. 2162392 - -14.6  -5.61596   ATCCGGATAAAAAAA             TGCCGCAC AGC GTGCGGCA             ATTAAATCATTGAGG 100 70
JA116_RS10055 2158161 .. 2158179 -    -3  -4.33258   ATTCCGAAAGAGAAA             GTTCTGCC GAT GGCGGAAT             TTTTACTGGATGATG  62 504
JA116_RS10045 NONE
JA116_RS10040 2156780 .. 2156802 -  -5.7  -3.64822   ACGCCCGCAGGGAAA          GAAT-GCATC AGCA GATGCTATTC           ATAGAGTGCATACAC  61 20
JA116_RS10035 2155699 .. 2155726 - -11.3  -4.13571   GGAAACAAAACAGAA        CGGCCCGGT AGTAATAATG ACCGGGCCG         GAATAATGTGACCGG 100 502
        vgrG NONE
JA116_RS10025 NONE
JA116_RS10020 NONE
JA116_RS10015 NONE
JA116_RS10010 NONE
JA116_RS10005 2148833 .. 2148856 - -11.6  -2.64759   TAACCGGAATAATAT          GCCGGACGCC CGCT GGCGGCCAGC           TCTCATGCAATCCGT  80 106
JA116_RS10000 2147688 .. 2147704 -  -6.5   -5.5353   GAGAGCAATAAAAAA              CCCGC TCAGGCG GCGGG              TTCTGAATACAGCAC  91 163
JA116_RS09995 2146882 .. 2146907 - -10.5  -2.72661   GAGGACGGTGAAGCA         TTCAATGCCAC CGTG GCGGCACTGAA          AGCGTATCCGGAATA  70 271
        sugE 2145922 .. 2145940 - -12.4   -5.4505   TGCTGTAATAAAAAA             GCCGGCAA TAT CTGCCGGC             TCAGGCCGTTGTCAA 100 137
JA116_RS09965 2142179 .. 2142190 -  -2.2  -3.27475   TCCGCGATCATAACA                CACG ACAT CATG                 CATTAACGTTTTCTG  45 28
JA116_RS09960 2141602 .. 2141638 - -24.1  -4.83615   CACTGCGGACAAAAA    TAAAACGGCAGATGTCA CTG TGACATCTGCCGTTTTA    TAACGATATTAACTA 100 52
JA116_RS09955 2139834 .. 2139850 -  -6.7  -2.59927   AACTTTTATAACGCA              TATTAAG CCT CTTAATA              GTATCAACGTAAGTA  56 50
JA116_RS09950 2139297 .. 2139325 - -11.8   -5.4505   CGTGTGAATAAAAAA       CGGGTTTGC-CCC TTCC GGATGCAAACCCG        CTGTTAACCTGCTGA 100 46
JA116_RS09945 NONE
        dmsB NONE
JA116_RS09935 2135070 .. 2135087 - -11.3  -4.18018   TTCTCTGACGTAAAA             GGCCTTC ATCC GAAGGCC              TTTTCTGTATCACTT 100 39
JA116_RS09890 2124697 .. 2124713 - -12.3  -4.16016   TGACCCGTGAATAAA              TGCGGAG TTT CTCCGCA              TTTATGTCCGTGCGG 100 27
JA116_RS09880 NONE
JA116_RS09875 2121578 .. 2121588 -  -3.2   -4.3739   GATGGCTGGACAAAA                 CTGA CGG CCAG                 TGTGCTGGCGGTTGC  62 292
JA116_RS09855 2119158 .. 2119185 - -13.4  -4.10161   TATCAGGCGGGAAAA        CAGATCCGGGAG TGAT CCCCCGGATCAG         GTCAGTTATTCAACA 100 31
        yegD 2117684 .. 2117695 -  -5.8  -3.07962   GGCGATACTCTAATA                GACC GACC GGTC                 TGTTGCAAGTTTATT  55 36
JA116_RS09845 2117016 .. 2117027 -  -2.2  -2.78596   TATCTCCGGATTAGA                CCAG TCGA CTAG                 TGTTCAGATAAATAA  41 70
JA116_RS09840 2115848 .. 2115875 - -12.1  -5.00616   TCCGGCCGTAAAAAA        TAACCCGGC-GC GGTTT GCTGCCGGGTTA        TTGTCTGTTATGCCA 100 33
JA116_RS09785 2102496 .. 2102508 -  -2.7  -5.44721   ATTACGGTAAAAAAA                TCAAC TCC GTTAA                GATTATGACCCGGCG  80 45
JA116_RS09775 NONE
JA116_RS09770 2099376 .. 2099404 -  -9.6  -3.31231   AAATAACTGATAATA        CCGGCTTCCG TCATTTCTC CGGAAACCGG        TTTTCCGGTTAAATC  74 39
JA116_RS09740 2094595 .. 2094610 -  -6.8  -4.55287   TGTATTGAGATAAAA              CACCCG TCAG CAGGTG               TTTTATCTTGTCAGG  76 51
JA116_RS20330 2094055 .. 2094065 -  -6.8  -5.30199   AAAAACGAATAAAAA                 GGCT CTG AGCC                 ATTCCGGTAAAGTGG  89 44
JA116_RS09700 2086093 .. 2086106 -  -2.3  -4.12188   CGATTACCGGGAAAA               CCGTT TTGA ACCGG                CAACACAGGCGATCA  55 0
JA116_RS09695 2085153 .. 2085170 -  -2.5  -2.79501   GATACCCTGATTACA             TCGGCGG ATTC CCCCCGG              AAAATCGCTATCCTC  39 181
        malX 2074657 .. 2074676 - -13.6  -5.27335   CTCCGGAAAGAAAAA            CCGCACTG TTTA CAGTGCGG             TGTAAGTTATCAGGC 100 35
JA116_RS09640 2073427 .. 2073451 - -12.8   -3.8613   GGCAAACACGAATAA          CCGGGGCGCA GAGAA TGCGCCCGGG          TCGTGCAAAAAATCA 100 38
JA116_RS09620 2069889 .. 2069922 -   -11  -2.68381   GAATGTAGGAAATAT     TCGCACCAGACCGA AATAAA CCGGTCTGATGCGT      TTTACGGCAGCCAAA  76 63
        uspE 2068823 .. 2068842 - -13.6   -5.1417   GGATAAAATGAAAAA            GGCGGGAA TTAT TTCCCGCC             TTTTTTATGCATAAT 100 52
        ydgH 2064483 .. 2064499 - -10.9  -5.66684   GAAGCTATAAAAAAA              GCGTATC AGA GATACGC              TTTTTTCCGGTGAAC 100 54
JA116_RS09595 2062838 .. 2062854 - -13.7  -5.40625   AGAGGAGACAAAAAA              GCCGGTC TGT GACCGGC              TCCTGTTTTCACGGT 100 42
JA116_RS09585 2057781 .. 2057799 - -13.8  -6.11644   GGATGTAAAAAAAAA             GCGCCGGA TGA CCCGGCGC             GGAACAAGGATGATT 100 77
JA116_RS09565 2053385 .. 2053414 - -11.6  -5.40072   TTTTTTGTAAAAAAA       TTGCCGGAATTC AGGATA AAATTCCGGCAA        TTAAATTGTAATGTT 100 55
JA116_RS09560 2052430 .. 2052451 - -11.7  -5.42514   TTATAAATGAAAAAA           TCAAACACC CGGA GGTGTTTGA            TTTTAATTTTCGTCA 100 129
JA116_RS09555 2051998 .. 2052008 -  -5.4  -3.72576   TGGCCGGGGAGTAAA                 TCAG TCG CTGA                 TATCATGACGGAACA  59 15
        norR 2046945 .. 2046957 -  -4.8  -3.34984   ACATTTGTCAAAAAG                TCCC GTCCG GGGA                TTATTTCAGCCCCAG  53 26
JA116_RS09530 2044775 .. 2044791 - -13.7  -3.55622   GTCAACGGCCTGAAA              TCCCCGC CGG GCGGGGA              TTTTTTATATTATGT 100 43
JA116_RS09520 NONE
JA116_RS09515 NONE
JA116_RS09510 2040950 .. 2040962 -  -6.2  -3.05963   AGGTTCAGCGGAACA                GGGG GATAA CCCC                GCAGGTCTGCCGCTG  56 2
JA116_RS09505 NONE
JA116_RS09500 2039717 .. 2039753 - -19.7  -2.57781   TAAACAGGTAATTTA    TGAAAACCACCGGACTC AAC AAATCCGGTGGTTTTCA    TTTTCACGACATTAT 100 51
        minC NONE
        minD NONE
        minE 2031010 .. 2031032 - -16.3  -5.25893   ATAGACAGCAAAAAA           CACGGCGGG ATATA CCCGCCGTG           TTATCAGTCACAGTA 100 49
JA116_RS09415 2020485 .. 2020511 - -13.9  -3.28924   GAGCTGGGTTTATAA         TACCCTGCATA TTCCT TATGCAGGGTA         TTATCTGATATTACA 100 41
JA116_RS09410 NONE
JA116_RS09405 NONE
JA116_RS09400 NONE
JA116_RS09395 NONE
JA116_RS09390 2014897 .. 2014933 - -18.2  -4.16301   AATGCAGATAAATAA    TAAAATCCCGGCAGAG GTTTT CTCTGCCGGGATTTTT    ATTTATGACGATTTT 100 61
JA116_RS09385 NONE
JA116_RS09380 2011446 .. 2011478 - -13.6  -4.37067   GAAACAGTATTAAAA      GGTCTGATTTCAGT TCAGT ACAGAAATCAGACC      CCGGTCAATATCTGT 100 43
JA116_RS09365 2008003 .. 2008030 -  -9.8  -4.64464   CAAAGGAAACGAAAA        GCATGCGCGTCA TGGA TGACGCGCCTGA         GCGCACAGGGATGTG 100 116
        lsrA NONE
        lsrC NONE
        lsrD NONE
        lsrB 2000312 .. 2000332 -   -14  -3.34398   TCCCCTGGTTAAACA            GGCGCGGA GGGGG TCCGCGCC            ACTGGTTAAATCAGC 100 48
        lsrF NONE
        lsrG 1999060 .. 1999081 - -11.6  -5.50925   AATCAATACAAAAAA           GTGACCGC CGTTAT GCGGTCAC            TTAACAGATCAAATA 100 49
JA116_RS09320 1997433 .. 1997461 - -13.3  -3.63298   GCGAAGTAAAGAACA        GGTATTACCCGAT AAA ATCGGGTAATACA        ATTAACATAATTGTA 100 49
JA116_RS09265 1985788 .. 1985820 - -11.3  -5.24129   GGTGTTGATAAAAAA      CTCCCCGCCGGGA AAATTCG TCCCGGCAGGAAA      GTGTAAAATCGATTC 100 199
         pyk 1984254 .. 1984275 - -15.9   -4.1552   TAGCTTGCTAATAAA           CCGCCTGTC ACCA GACAGGCGG            TTTCAGTTTTGTCTG 100 48
JA116_RS09250 1981201 .. 1981233 -  -7.7  -2.88228   AAAAAGAAATAACAG      TTACAGCTTCTGATG GAT CTTCAGTAGCCGCAA      TAACATACGTGGCTA  58 371
        znuC NONE
        znuB 1975068 .. 1975091 -  -8.9  -4.63527   GTACTACTGCAAAAA          GCCCTGACA GCTCAA TATCAGGGC           TTTTTCTGTATATGA 100 60
JA116_RS09165 NONE
        cmoA NONE
        cmoB 1965132 .. 1965148 -  -5.1  -2.91264   TTTTGGAGGTATATA              CCCTG TAAATAT CAGGG              TATATACCTATTTGT  52 46
JA116_RS09150 1962829 .. 1962847 - -14.6  -4.98531   CGGTTAAATCAAAAA             CGCCCTCA TAT TGAGGGCG             TTTTGCTGTCAGAAG 100 34
        argS 1959383 .. 1959398 -    -9  -5.64304   GAAGACAATAAAAAA              GGAACC GGAT GGTTCC               TTTTTTGCAGAAATA 100 60
JA116_RS09125 1957524 .. 1957536 -  -3.4   -4.3534   CTGCAATCAGCAAAA                GCAA GAAAA TTGC                AGAAAAACAGTATAG  62 115
        mdtH 1952127 .. 1952141 -  -2.8  -3.53012   CTGTGCTGCGGCAAA               TCCAAA ATA TCCGGA               TCAATTTAATACGGC  48 26
JA116_RS09100 1951291 .. 1951314 - -11.2  -3.65415   TCAATCACAAATTAA          TTTTATCTGC GGCA GCAGATAAAA           CAGCGTTTCATTCTT  84 231
JA116_RS09095 1949675 .. 1949686 -  -5.8  -3.25102   ATCTCATGCACAACA                CGGT TTTT ACCG                 CACACTGGCGATCCT  54 173
JA116_RS09080 1947748 .. 1947769 - -14.5  -5.75822   CAGAAACGAAAAAAA           GCCTGCTGA TTGC TCAGCAGGC            TCTTCTCTTAATATG 100 39
        dauA 1945737 .. 1945757 -    -6  -4.55295   TGCCGGATAAAGAAA            CGGCGGAC TCTGC GCTCGCCG            CTGTATTCAGTATAA  73 58
JA116_RS09070 1944777 .. 1944789 -  -2.6   -3.8679   GATAAAACACTGAAA                CGCA TCAAC CGCG                GTCATGATTTTGCCT  54 495
        lolB NONE
        ispE 1937571 .. 1937582 -  -5.8  -2.79492   TTGTGAACCTGAAAG                CGTC CGGG GACG                 GAATCAGGGGCAATT  53 39
         prs 1936519 .. 1936538 - -12.2   -5.4505   CCTGCCAACAAAAAA            CCCGTTGT GTTC ACAACGGG             TTCAGACACGCAATG 100 59
         pth 1935207 .. 1935225 -  -8.8  -3.18433   ACCTTAAAAATGACA             GCAGACCA AAA CGGCCTGC             AAGCACGTTAAATAA  69 89
        ychF 1934011 .. 1934028 - -11.3  -5.08601   GTATCCCAATAAAAA             TCCACGC AATA GCGTGGA              TTTTATGGTTTTTTA 100 88
        yedE NONE
JA116_RS08990 1929958 .. 1929979 -   -13  -5.19212   AGCAGGATCAAAAAA           GGCGGCAG ATCCGG CTGCCGCC            TTACCATCCATATCA 100 60
JA116_RS08985 NONE
JA116_RS08980 1927678 .. 1927713 -  -2.8  -4.85599   TTGATGTGATAAAAA    TCACATAATAAAAACGA TAA CCCCTTTTATT-TGTGA    AATAAAAAAACAAAA  67 105
JA116_RS08975 1926273 .. 1926292 - -13.6  -3.23869   TAGCAGCCCATAACA            GGGCAGCA CGTA TGCTGCCC             TTTTTAACAAAAAAT 100 50
JA116_RS08970 NONE
JA116_RS08965 NONE
JA116_RS08960 1922820 .. 1922837 -  -2.6  -2.64622   ATAGACACTCATAAT             CCGCTC CCTTAT GACCGG              GCTTTCTGCAATGCA  41 16
JA116_RS08955 1921143 .. 1921174 - -12.3  -3.99374   GGGCATCAATAATAA      CAGGTTCCGGTGA CTGAAT CCGCCGGAACCTG       TTTATTATCAGACTT 100 33
JA116_RS08925 1914361 .. 1914379 - -14.6  -5.77988   ACAGAGATAAAAAAA             CGGGCACT GAA AGTGCCCG             TTTTGCCGAAAACAG 100 48
JA116_RS08915 1911433 .. 1911443 -  -4.6  -2.79831   TCAATGCCCATGAGA                 CACC TCC GGCG                 CGATACCTTTGCGGA  49 0
        cydB NONE
JA116_RS08905 1910191 .. 1910218 - -17.1   -5.5943   AAATTATTAAAAAAA        GGCACACCGCA TGGGGG TGCGGTGTGCC         GGGCAATGCAGCTGA 100 92
JA116_RS08900 1909224 .. 1909248 - -15.7  -2.65112   AACTGATTCACAGCA          GCTGCGGCAGA GAA CCCGCCGCAGC          CTGTTTATCATCAGT 100 36
JA116_RS08885 1906630 .. 1906642 -  -3.3  -3.72576   CTGGCGGTTATTAAA                CTGTC GCA GTCAG                GTTTTACCCCTGAAC  53 150
JA116_RS08870 1904617 .. 1904635 -  -8.1  -3.57263   AGCGGCACGGGCAAA             GGCGGCA GACGT TACCGCC             TGAAGGCAGATGTTA  68 55
JA116_RS08860 1903640 .. 1903657 -  -9.1  -3.79787   TGACAGGAACGGAAA             GGTCCGC AAAC ACGGACC              TTTTTTGCAGAAGAC  78 45
JA116_RS08840 1901113 .. 1901152 - -13.8  -6.00086   ACAGTATAAAAAAAA  TCCGCACGTTGT-ATAACA GAA TGCTATAACAGCGTGCGGA  CAGAAACGAAAATAA 100 150
        hemB 1895158 .. 1895169 -  -4.4  -3.55203   AAAAGTCGCTGTAAA                CACA TCCG TGTG                 CGCTCAGGCGCGTCA  52 110
JA116_RS08775 1887202 .. 1887219 - -12.7  -4.70879   GTTAAACCGTAAAAA             GGCGTGC AACT GCACGCC              TTTGTTATATTCAGC 100 36
        pabB NONE
JA116_RS08755 1884328 .. 1884341 -  -2.3  -4.82901   GCTTTCGGATAAAAA               TCGGG CATA CCTGA                TGAAAAAAAACAGGG  66 75
JA116_RS08750 1882771 .. 1882794 -   -14  -5.08824   GCTTCAGGTAAAAAA          TATCCCTGCA ATGT TGCAGGGATA           TTAATGTTACCGAAT 100 67
        manX 1881325 .. 1881341 -  -2.3  -2.70932   TTTCTCCTTTAACCA              GTCATTT TGC AAACAAC              AAATTTTGTATTGAG  40 53
JA116_RS08740 NONE
JA116_RS08735 1879548 .. 1879565 - -12.7  -5.67283   AAGTGAAACAAAAAA             CGGGAGG CGAG CCTCCCG              TTTAAACTAACATAT 100 97
JA116_RS08730 1878999 .. 1879026 -  -9.4  -4.91084   TATTTAATAAGAAAA        TAAAGACTAATA TTAT CATTAGTCTTTA         TTTCTGTAGGGGGAT 100 56
        mntP 1878081 .. 1878104 - -12.4  -4.46215   CAGATTCAAAAACAA          CAAGACCCGC CGGA GCGGGTCATG           AAAACGTATCACCAC 100 47
JA116_RS08715 1876066 .. 1876105 -  -2.3  -3.06515   TCTGACGGGTAAAAC  TGTATTCTGCTGTGAACA AAAAA TATTCACAGCAG-ATTTA  TCCGATTAGCGGGTC  42 39
JA116_RS08710 1875224 .. 1875253 - -12.3  -4.46212   GGCGGGACGAGAAAA       TAAAACAGTACGG CGAA CCGTACTGTTTTG        GTGAATAAATAAGAG 100 49
JA116_RS08705 1873693 .. 1873737 -  -5.1  -3.21962   ATATTATTAATGTAA TGGCTGCCGGCACAGAATA GGAAAATGG TAT-CCG-GCCGGCAGCCT GTGTTACTTTTAGCT  53 46
JA116_RS20305 1870387 .. 1870412 -   -12  -5.99154   CAGGAAATAAAAAAA         TCCGGCAATA AATAAG TATTGCCGGA          TAGTATCAGATAATT 100 50
        xseA 1860346 .. 1860364 -  -5.8  -3.07935   ACCGGATCTACGCAA             CCGGCGGC AGT GCGGGCGG             GTTGCTGATGGGAGC  53 512
JA116_RS08660 1857659 .. 1857677 -  -6.7  -2.91276   GTTTGCCGGAGAAAT            CACC-CGG CGGT CCGTGGTG             CGCCGTTACGGGGTT  54 389
JA116_RS08650 1856462 .. 1856480 -  -3.8  -3.53012   CTCTCTCTCTGTAAA             TTCGCTCT GTA AAAGCGGA             TTTCAGTATAGCATT  51 111
JA116_RS08645 NONE
JA116_RS08640 NONE
JA116_RS08635 1853712 .. 1853734 - -14.9  -3.06509   TGGTAAACAAGGAGA           TCCGCGCAG GGAAA CTGCGCGGA           TAGTGAGAAGTTATT 100 36
JA116_RS08615 1851297 .. 1851324 -   -15  -4.35095   AAAAAAAGGGGAAAA        TGGCGC-GGCAAA TGA TTTGCCCGCGCCA        CCGGAAGCGGTTAAT 100 36
JA116_RS08610 1849826 .. 1849847 - -10.1  -3.72893   GATTCTGGGACGAAA           CTCCACCCC GGAA GAGGCGGAG            TTTCTGTTACAGCCC  79 32
        yddG 1848261 .. 1848271 -    -4  -4.23213   CTGACAGGCAACAAA                 CAAT AAC ATTG                 GCGCTAATTTAGCAT  61 74
JA116_RS08595 1847164 .. 1847176 -  -3.3  -2.92091   ACAGCCAGGCACAGA                CAGGA GCG TCCGG                CAGTGACGGCAGCCG  44 472
JA116_RS08585 NONE
JA116_RS08580 1845565 .. 1845613 - -13.4  -4.20817   GAGATGGCAAAATAA GTATTATCAG-ACTGCCGGTGCTG ATA CATCACCGGCAGTACTGTTA-TAC GGTTAACGGTTTCCG 100 28
JA116_RS08570 1843923 .. 1843939 -  -2.3  -3.80625   GCCGGATAAGGTAAA              TTATGAT CGG AACATAA              TCAGGGGAGTGACTG  51 261
JA116_RS20300 NONE
        osmB 1843068 .. 1843088 - -14.7  -3.74747   GTAATCGCGATGAAA            GAGCCGGCA GAA CGCCGGCTC            CGGAAATTATTTTTT 100 32
JA116_RS08465 1828792 .. 1828813 - -10.9  -4.34402   TTTTGTATATCAAAA           GGCACTCAGG ACA CCTG-GTGCC           TTTTTGTATTTCCGG 100 344
JA116_RS08450 1826887 .. 1826902 -  -4.8  -3.16117   ACAGGCAATTTAACA              TAAGTA CCAT TACTTA               CCAAAACTAATCGGC  51 64
JA116_RS08445 1825749 .. 1825759 -  -5.4  -2.92668   CAGTAGGTAATGACA                 CAAG GTA CTTG                 CTGTTATCATTTGAA  52 32
JA116_RS08440 1824615 .. 1824637 -    -5  -4.64144   AACAATTGCTAAAAA           CAAAAACA GATATCT TGTTTTTG           TAGGTGAGGAAGTCG  72 327
JA116_RS08425 1823044 .. 1823082 -  -9.6  -3.19293   AAGCTGAACAGGTAA   TTGCCATGCTGGAACGTA AAA TACGCCTCAACATGGCTA   CTGACGAAGACAAGG  67 129
JA116_RS08170 1788349 .. 1788364 -    -4  -3.51825   GGATTCTAAGTACAA              CAACAA TCCT TTGCTG               CCATTACAAGATATG  52 198
JA116_RS08165 NONE
JA116_RS08160 1787097 .. 1787112 - -10.4  -5.29782   GATAGGCACAAAAAA              GCCCTC GCGG GAGGGC               TGGGGGTTATTTTTC 100 32
JA116_RS08145 NONE
JA116_RS08140 NONE
JA116_RS08135 NONE
JA116_RS08130 1783246 .. 1783261 -  -4.7  -3.86194   AAGTCCGGTGATAAA              TACCC GTCCGT GGGTA               GTGATTACCGGCTCA  59 287
JA116_RS08125 NONE
JA116_RS08120 NONE
JA116_RS08115 NONE
JA116_RS08110 NONE
JA116_RS08105 1780063 .. 1780074 -  -4.4  -3.81259   ACATAAGTGACTAAA                CACA TCCG TGTG                 CGTCACTATTGTGGT  57 47
JA116_RS08100 1779372 .. 1779387 - -10.4  -5.28176   TTTAGGTATAAAAAA              CCCTGC TAAT GCAGGG               TTTGGTTCATTCAAT 100 32
JA116_RS08095 NONE
JA116_RS08090 NONE
JA116_RS08085 NONE
JA116_RS08080 1777740 .. 1777757 -  -2.7  -3.83026   CTTCCTTACATCAAA             GACCTCA TCAT TAAGATC              CATCCCTCATCTCCT  52 239
JA116_RS08075 1776075 .. 1776095 -  -8.5  -4.08706   TGTTGAGCAGACAAA            CAAAAAAAT CGG ATTTTTTTG            CTCACAGGGGTAGAC  79 303
        rcsD NONE
        rcsB 1772515 .. 1772559 - -14.6  -2.94745   GAAAATAATAAACAG CCGGATAAAAAAACGCCATTC ATCT GAATGGCGTTTTTGCATC-GG TACGGTAATACGCTT 100 46
        nrdA NONE
        nrdB 1762097 .. 1762118 - -14.5  -3.21288   TAATGCAGATGAATA           CCCTGCATG TTGC CATGCAGGG            TGACTTTATAGCGGG 100 44
        yfaE 1761842 .. 1761858 -    -8  -5.40474   ACGGGCGTAAAAAAA              CCGGAT TGCTG ATCCGG              TCACATTATCATTCA 100 38
        tyrP 1760473 .. 1760501 -   -19  -4.61868   CACTGAGATAGAAAA        GAATCAGCCCGG GGTGA CCGGGCTGATTC        TCAGAAAGGTGATAT 100 40
JA116_RS08010 NONE
JA116_RS08005 NONE
JA116_RS08000 NONE
JA116_RS07990 1755117 .. 1755142 - -10.4  -2.67143   AGAGGCAGCAGATGA         TCAGCCTGCG GGACAG CGCAGGCAGA          GTCTTATACGGGAAA  74 156
JA116_RS07985 1754211 .. 1754227 -  -7.2  -4.04355   AAAAAACAGATCAAA              CCCGCC GCAGG AGCGGG              TTTCTCATCAGATAA  72 49
JA116_RS07980 NONE
JA116_RS07975 1752677 .. 1752701 - -14.4  -4.84529   GCATAAACGGAAAAA          GGACAGAGAC GGTCT GTCTCTGTCC          TTATGAACTACAGCA 100 33
JA116_RS07965 1749307 .. 1749338 - -13.8  -4.33487   AGAAAACAAAGTAAA      TGCCGGATGAGGGGA ATA TCCGC-CATCCGGCA      GAAACATCAGTGATC 100 32
JA116_RS07950 1746865 .. 1746890 -    -4  -2.54193   CAGTACCTGAAGTGA         CAGGCCGGCAT GCAGT AT-CCGGTCTG         TCCGGTGGTTTATGA  45 60
JA116_RS07945 1745674 .. 1745719 -  -6.3  -3.61239   CAGATTCATACAGAA TAACAGGGAATGTTCAGGTAAT ATA ATAACCTGATG-CTCCCTGTTA TACAGACCTAACCGG  63 33
JA116_RS07940 1744917 .. 1744930 -  -2.5  -4.06687   ATCCGGCAGAAATAA               TATTA AGGG TAATA                GGCATTAACCAGCAT  54 14
JA116_RS07935 1744453 .. 1744463 -  -2.4  -5.28176   GCCATTCAGAAAAAA                 CGGC CGG GCTG                 GATAAATTACTGGCG  75 99
        cycA 1742085 .. 1742099 -    -7  -6.07627   AGTCTGAAAAAAAAA               TCCGGC GTT GCCGGG               ATTTTTTTGTTTATT 100 39
        putA 1736021 .. 1736036 -    -9   -4.7878   TACTGATAAAACAAA              GGGAAC TTTC GTTCCC               TTTTTCCGTTTTAAG 100 67
        fliD NONE
        fliS NONE
        fliT 1729223 .. 1729259 - -22.5   -4.8048   GCCGGATAGTAAAAA    GTTCCTGCCGGACAG GGAACAA CTGTCCGGCAGGAAC    TGATCAGGCTTTTTT 100 77
JA116_RS07860 1727260 .. 1727284 -  -7.9  -3.91983   GCAGATAAATAAAGA         GAGCGGG-TC ACTTCA GATCCCGCTC          TTTTTGATCGGCTTA  74 38
JA116_RS07850 1725831 .. 1725854 -   -14  -3.89614   GTCAACCGGCAGAAA          CAATAAGCCC GGCG GGGCTTATTG           TTTTATCAGTCCGGT 100 20
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
JA116_RS07805 1716676 .. 1716709 -  -3.8  -4.97312   AAAACGAAGCAAAAA    GGCGGTAACTCGGGGC TTTA GTCCCT-GT-ACCGCC     GTTATGCACAGAAAT  73 40
        fliL NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ NONE
        fliR 1711956 .. 1711969 -  -3.1  -5.08601   GTATGCGAAGAAAAA               CATCC GCGT GAATG                CAGTGGCCCCCGGTT  77 385
JA116_RS07760 1709958 .. 1709970 -  -3.3   -4.2461   ACCGCGATCAACAAA                GGTCT TGA AGCCC                TGAAGATCCCTCAGC  60 415
        flgA 1699221 .. 1699236 -  -4.6  -2.79183   CCGATCTGTATGAGA              TGGAGG GGTG CCTCCC               TTATGCTCATTATTT  49 93
        flgM NONE
        flgN 1698102 .. 1698127 - -14.7  -3.73386   ATATAACCACTCAAA         GGGGAACCCGC GCAA GCCGGTTCCCC          TTTTTGTTATATACG 100 304
JA116_RS07660 1691094 .. 1691115 -  -2.9  -4.05402   GGTGAATGAAAAACA           GGCATAAAC AGAG GGTTAAGCC            GCACCTTTCATCCAG  54 19
JA116_RS07655 1690876 .. 1690894 -   -16  -4.84529   GCAGAAATGCAAAAA             GCCCGCTC AGT GAGCGGGC             TTTTAAATCTGGCTC 100 35
JA116_RS07650 1690642 .. 1690660 - -14.6  -5.42514   GCAGAAATGAAAAAA             GCCTGCTC ACT GAGCAGGC             TTTTAAATTTGGCTC 100 35
JA116_RS07645 1690321 .. 1690339 -   -16  -5.04601   GTCAGAAAGCAAAAA             GCCCGCTC AGT GAGCGGGC             TCTTAAATCTGGCTC 100 35
JA116_RS07640 1689718 .. 1689732 -  -4.2  -4.25104   GCTGGCTGAGGAAAA               GCCG GAAGTCG CGGC               AGCAGCACGGGTTCA  62 324
        pyrC 1687927 .. 1687961 - -12.3   -5.0916   CTCTGAACATAAAAA     CTGAGCAATAAGACG TTTTT CATCTTATTGCTCTG     AAGGGCTACGTATTT 100 59
        bssS 1687463 .. 1687480 - -11.3  -4.51238   CGCAGAAAACACAAA             GGACACC AAAT GGTGTCC              CTCTTGTGCAGTCTT 100 47
        ttrS NONE
        ttrR 1679837 .. 1679850 -  -6.7  -3.40403   TCGTTGTTATCAGAA               GCATC AGCA GATGC                GGGTTCATGTAAATG  61 79
JA116_RS07590 1678837 .. 1678864 - -18.6  -4.65933   GAGCGGTAAAACAAA        CACGGCTGTTTC AGAT GAAACAGCCGTG         AGCGGATTAATGGAC 100 32
        mdtG 1677552 .. 1677579 - -10.7  -4.28361   GTAAGCGGATGAAAA        CCGG-CGATATC TACCC GATATCGGCCGG        TTTAATTTCCGGTGT 100 8
JA116_RS07580 1675599 .. 1675618 - -13.6  -5.75342   CCTGCGTAAAAAAAA            GGGTGAGC CGGA GCTCACCC             TTTCTGTCTTTATAT 100 51
JA116_RS07560 1672035 .. 1672049 -  -2.8  -5.03314   TGGATTGTGAAAAAA               TACATC GAT GAGGTA               TTTACACAATCTGAT  77 360
JA116_RS07450 NONE
JA116_RS07445 1649124 .. 1649165 -  -9.6  -3.01906   GGAATAAACATGACA CTCCGCACCGGCATATTAT GCTGA ATAAAA-GCCGGTACGGAA TAAGAATTAACTAGT  71 36
JA116_RS07440 NONE
JA116_RS07435 1647354 .. 1647368 -  -7.8  -2.75074   CGCAGGTGAATATCA               CCGGTC TGC AACCGG               CTGAAAACAGCCAGA  57 311
JA116_RS07390 1639702 .. 1639723 - -10.9  -2.93633   TTATAAGATATCACA           CCCGT-TCCG TCA CGGACACGGG           CAGACAACCGGCAGA  79 480
        hemF 1638734 .. 1638752 -  -2.3  -2.66733   TGTGAATTGATATCA             GACCCAG TCCCG CGGGATC             AGGAAATCGTCCAGC  40 4
JA116_RS07375 1637484 .. 1637511 - -11.4  -4.15788   AAGGGCGTTAACAAA        GAAAACCCGCAT TTTA ATGCGGGTTTTT         TTTATGTCCGGACAT 100 43
JA116_RS07330 1627881 .. 1627896 - -11.8   -4.1196   AATTCAGTCTCAAAA              GCCCGG TAAT CCGGGC               TTTTGCTTTTTACCG 100 35
        suhB 1610243 .. 1610263 - -14.1  -5.65927   CACTGAAATAAAAAA            CGGTGGTTA TGT TAACCACCG            TTTTTTAAAAGAGGG 100 51
JA116_RS07235 1604134 .. 1604162 - -18.9  -3.65201   TAACAGCGGTAATAA        TACGGCACCGGCG CTG CCCCGGTGCCGTA        TTCTCAGAGTGATTC 100 29
        hmpA 1599768 .. 1599786 -  -7.3  -2.80016   GGTCAGCATGAATTA             CCGGCGC TGTTT GCGCAGG             TTTCCGGGATGAATT  53 316
        mltF 1579530 .. 1579559 - -11.5  -3.06183   GTGATGCTCAGTGAA       TTTTTCCGCCGCC GCCG GGCGGAGAAAAAA        GCCCTGAAAAAACAG  75 74
JA116_RS07140 1576023 .. 1576040 - -10.5   -4.6644   AACAGAGTGTAAAAA             GCCCGGC TGCG ACCGGGC              TCTTTTTTTATCAGA 100 46
JA116_RS07115 1570814 .. 1570830 -  -2.3  -3.13475   GAACGTCATATTGAA              TTCCTAT CGA ATAGTAA              TAAAAAAATAAAAGA  43 170
JA116_RS07110 1570224 .. 1570247 - -15.3  -3.38178   TAATTAATGGGATAA          GGCAGCGCG GTGAAG CGCGCTGCC           GTGGCTGACTGCTAT 100 40
JA116_RS07105 NONE
JA116_RS07100 1568947 .. 1568957 -    -4  -4.44608   TTTACTGAAAAATAA                 GATT AAA AATC                 AGGGCTGCCGAAAAT  66 1
JA116_RS07095 NONE
JA116_RS07090 NONE
JA116_RS07085 NONE
JA116_RS07080 NONE
JA116_RS07075 NONE
JA116_RS07070 NONE
JA116_RS07065 1561071 .. 1561086 -  -6.1  -4.63486   ATGCCGGTAAGAAAA              CCGGT ATTATG ACCGG               TCAGGGTAATTCACG  77 26
JA116_RS07055 1559771 .. 1559781 -  -3.2  -3.01329   CCATACACCAAAGCA                 GGTA AAT CACC                 ACATCACTCCCCGAT  44 29
        tssB NONE
        tssC NONE
        tssE NONE
        tssF NONE
        tssG NONE
        tagH NONE
        tssJ NONE
        tssK 1541771 .. 1541783 -  -6.2  -3.51924   CGCTGATGCAGATAA                CCGG TATCG CCGG                GCAGATCATCAGACA  61 65
        icmH NONE
        tssH NONE
JA116_RS06960 NONE
        tagO NONE
        tssA NONE
        tssM NONE
JA116_RS06940 NONE
JA116_RS06935 NONE
JA116_RS06930 1528267 .. 1528305 -  -9.1  -4.63592   TTTTAATAAAAATAA  GGAA-GAACGGAAATCAC GATA ATGATTTCCGTTCATTGC   GTTTAAATCAGCGAT 100 28
JA116_RS06925 1527711 .. 1527734 -   -14   -5.0133   GAGCTGTGTAAAAAA          TAACAGAGGG AATG CCCTCTGTTA           TTTATGTCAGAATAC 100 32
JA116_RS06905 1525205 .. 1525240 -  -8.8  -2.88452   TCTTGAAACAAATAC    CTGACAGTTGCGCCCG GTTG CGGGCGTTTCTGTCTG     TTCAGATCTTATCTG  67 27
JA116_RS06865 NONE
JA116_RS20255 1510690 .. 1510728 -  -4.5  -2.94218   ATGTTGCATTATAGA  CTCCTGA-ACGGGCAGCC CGCA GGCTGCCCGGATTAGAAT   GAAAATTAACGGATG  50 31
JA116_RS06860 1506396 .. 1506420 -   -13  -5.52986   ATGCGATTAAAAAAA          TAACAGCCTG AATAA CAGGCTGTTA          TCTGTCTCTCAGCGA 100 47
        srmB 1501017 .. 1501033 - -12.3  -5.71983   GTAAGCATAAAAAAA              CGGACTG TGA CAGTCCG              TTTTCGTTTATCAGA 100 56
         ung 1498552 .. 1498570 - -11.7  -2.93723   TTGTCAGTAATCACA             TGCCGCC GCAAG GGCGGCA             TTTTTGTACCTGTAT  83 52
        nadK 1496881 .. 1496907 -  -3.7  -3.08197   GTGGATATACACATA         CCTGTTTTTAC ATACA GTATAATCAGG         ATTTGCATCCGGTAA  48 60
        recN 1495181 .. 1495199 -  -4.5  -2.91689   AAAGTTAGATGAAAT             CAGCTTG TTTGT CATGCTG             CCAGCAATTCTTTTG  50 18
        bamE 1494608 .. 1494636 -  -6.5  -5.18866   CTGAAATAAACAAAA        CCCGCAGATCCAC GAT GTGTCCCGGCGGG        TTTTTTTGTTACTTA  87 72
JA116_RS06790 1492939 .. 1492954 - -10.4  -5.77988   AGAGATATAAAAAAA              CGGGGA AGAT TCCCCG               TATTTTTATTGCTGC 100 63
JA116_RS06785 1491360 .. 1491370 -    -4  -4.56775   ATCCTGTTTGAAAAA                 TGAT ATA ATCA                 CAAAATCCCCGGAAC  66 23
JA116_RS06780 1490194 .. 1490205 -  -2.2  -4.28548   AGGTACTTAGTAAAA                CAGC TATC ACTG                 AACAGTCATTTATTG  58 150
JA116_RS06775 NONE
JA116_RS06770 1488729 .. 1488760 - -10.8  -2.53263   CGGACTGTGAAGTGA      CCCCTGATAGCCGG ATAA CCGGTTATCGGGAG       TTTTAGTGTCAAAAT  76 169
JA116_RS06750 1483669 .. 1483688 - -10.7   -3.5936   GTTAAAGGCTGCAAA            GCGGAGC AATTCA GCTCCGC             TTCCAATAAAAAACG  84 48
JA116_RS06730 NONE
JA116_RS06725 1480653 .. 1480667 -  -3.5  -3.55814   TATTAAGTGAGACAA               CCCGT TTTGC ACAGG               CGGATAAATCAGTTA  51 298
JA116_RS06695 NONE
JA116_RS06690 NONE
JA116_RS06685 NONE
JA116_RS06680 1471882 .. 1471907 -  -9.8  -4.88129   AAAAACGACGAAAAA         TGCTGTCACC GGAAGT GATGACAGCA          GGATATAAAATAAGC 100 51
JA116_RS06675 NONE
JA116_RS06670 1469396 .. 1469429 - -14.9  -3.21276   TTTCGTCTGATAACA     CAAAGCAGGA-AAAAC CAC GTTTTATCCTGCTTTG     TCAGCAATCTCACGC 100 65
JA116_RS06650 1466336 .. 1466362 -  -9.7  -3.27364   GAGAAAATAAATAAT         CATCAATAATA TTAAT TATTATTGATG         TGTAAACTATTTCTC  76 494
JA116_RS06615 1459192 .. 1459205 -  -2.4  -2.86449   ACGGCAGGATAATCA               GACA TAGCAG TGTC                TCCGTAAGATAAGGG  41 52
JA116_RS06610 1458372 .. 1458395 -  -6.8  -3.63266   AAAATGCATTGGAAA          CCAGTTCA TTATCATC TGAACTGG           TTGAGCTGGTTTATC  63 380
JA116_RS06595 1456789 .. 1456801 -  -9.1  -3.19003   ACAATACTGCACCAA                CGGCA CGA TGCCG                ATGGCGGACTGGCTC  67 320
JA116_RS06585 1455543 .. 1455553 -  -6.8  -2.78384   GGTGTTCTTATTACA                 GCGA CCT TCGC                 GCCGCCCGGAAGCGG  53 85
JA116_RS06575 1453646 .. 1453656 -  -2.4  -3.14132   CGCCCGGTGTAGCAA                 CTGC GGC GCGG                 TATTATCCGGTGAGG  43 48
JA116_RS06540 1446523 .. 1446535 -  -5.5  -3.21872   GCCAAAGAGATTGAA                CGGCT GAT AGCCA                ATGCGGTCTCCCGCG  52 356
JA116_RS20245 1444567 .. 1444582 -  -3.2  -3.32844   GTTTTCAGCCTATAA              CGGG AAGCAAAA CCCG               CTGCTGTCCCAGCCC  47 4
JA116_RS20240 1443657 .. 1443672 -    -9  -4.05067   TACGTTATAAAAACA              GGCTCT GATG AGAGCC               ATCATTTTCATTCTG  80 368
JA116_RS06520 1442422 .. 1442432 -  -2.6  -5.59502   GAAAAAACGAAAAAA                 TAAT AAA ATTA                 ATATATGTAATCCCG  84 23
        fimA 1441472 .. 1441485 -  -2.3  -4.07618   TGCTGAATAAGCAAA               CCCTG ACAT CAGTG                TGAAAAACAATATCA  55 275
JA116_RS06510 NONE
        fimD 1438157 .. 1438169 -  -4.1  -2.65737   GAAGAGGTAAAAATG                CCATT AAT AACGG                GATTGCATATCTCTT  45 57
        sfmF 1436492 .. 1436504 -  -2.7  -3.95435   CGGCGGAAAACAGAA                TTACG GCA CATAA                CGGTCTTAATACCGC  55 167
JA116_RS06445 NONE
JA116_RS06440 1427409 .. 1427449 - -10.7  -3.02144   CCACGCCGGGTAATA CGCTCTTCGTGAGGGGAAA CTGTT TTTCCCCTCAC--AGAACG GATAAACGCTTACCA  79 35
JA116_RS06420 NONE
JA116_RS06415 1422582 .. 1422592 -  -3.2  -3.24924   CTGTCACTGATAATA                 TGCA TAA CGCA                 CACAGCGATATTAAC  47 98
JA116_RS06410 NONE
JA116_RS06405 1420546 .. 1420565 -  -7.8    -2.914   CTTATCAGATTAAAG            TCCCGGAA TCCG TTCCGGGG             GTTAAAAATAATAGT  62 27
JA116_RS06400 1419323 .. 1419346 - -11.8  -4.38712   GCTATTTGTATAAAA          CAGGGTGAAT GAAT ATTCACCCCG           GAATTAACTTTATGA 100 35
JA116_RS06395 1418531 .. 1418544 -  -3.9   -3.3944   TGCGGAAGATAAAAG               TGATA ACAA TATCA                GGACAGAAAGGTGGT  49 105
JA116_RS20230 1416041 .. 1416057 -  -8.7  -3.46647   TGTACGGAGTAAACA              GCCGATA CGT TACCGGC              ATGTTTCATCAAAAA  73 18
JA116_RS06380 1414823 .. 1414846 -  -4.4  -4.07885   CAGCGGTCTTGAAAA          CCGCCGACGG GAAA CCGTCCGAGA           GTTCGAATCTCTCCT  61 237
JA116_RS06370 1414199 .. 1414231 -  -9.2  -2.65112   AAGTCACGGATATTA     TCGCAACC-CCCTGT GATT ACAGGGAAGTTGCGG      TATTTCGTGTCCGCC  68 56
        hspQ 1413420 .. 1413443 -  -9.5  -4.98128   ATAAGCAAAAATAAA          GCCCCGGCA TGTGAG TGGCGGGGC           TCTTCGTGTATTAAT 100 36
JA116_RS06350 1412370 .. 1412395 - -14.7  -3.06261   CCTGAACGGGGAAGA         TGCGGCGGGGA AGGT TCACCGCCGCA          GCACGTGGTTACTGA 100 34
        yccS 1407886 .. 1407901 -  -3.2  -3.34895   GGCAGGCTGAATTAA              CCGG TGGTCATC CCGG               GGAACGTTATGATTT  47 54
        sulA 1406297 .. 1406310 -  -4.5  -2.67667   CTATTTAGCAAATAG               CTCCC AACA GGGAA                TTTTAAGCACTACCT  48 258
        ompA 1405059 .. 1405084 - -14.9  -5.31456   GGAACGGACAAAAAA         TAAACCCCATC CGGA GATGGGGTTTA          TATAATTCATTGCAT 100 78
JA116_RS06315 1402551 .. 1402566 -  -3.2  -3.32966   ATAGGCTACACAATA              GCTTAC ACTT GTACGC               TGAACAAGTCCGATC  47 55
        fabA 1401937 .. 1401966 - -16.7  -2.71011   ACCCGGTTTGAAGGA       TAAAAAACCTCCG CATG CGGAGGTTTTTTA        CGGATAACACCACGG 100 50
JA116_RS06275 1392481 .. 1392509 -  -4.4  -5.44721   ATTACGCCAAAAAAA        TACCCCCTGTGG TTTAT CTGCCGGGGGTA        TTTTTTATCGGTTAT  85 71
        pncB 1383812 .. 1383854 -   -13  -2.57211   ATTGGGGGTCAGAAG CCCGAAAAACAGAAAAAA TAACCGT CTTTTTCTGTTCTCCGGG GGTATCTGTATAAAA  91 48
        asnS 1382205 .. 1382222 -  -8.3  -5.65177   ACAGGCATAAAAAAA             GCCGGCC TGAT GGCCGGT              TTTTTACATTCAATA 100 54
JA116_RS06235 1380823 .. 1380840 - -12.7  -5.62045   ACAGATAACAAAAAA             CCCACGG CAAG CCGTGGG              TTTTGGTATTCATAT 100 57
JA116_RS06230 1379387 .. 1379417 - -19.8   -4.6955   CAGGAACAGATAAAA       CAAAGCCCCCGGCC GGA AGCCGGGGGCTTTA       TCAGAAGCAGAATGT 100 52
JA116_RS06225 1378458 .. 1378478 -  -9.7  -3.00908   TAGTAAAGATGAAAG            GTGCCTGAC GTT GTCAGGCAT            TTTTTATGAGCCGGG  73 29
JA116_RS06200 1372990 .. 1373017 - -14.2  -3.53012   GGGTTTTCTCTGAAA        CGGATGAGCGTA TGAC TGCGCTCATCCG         TTTTTTATATCAGCG 100 35
        elyC 1364603 .. 1364625 -  -9.9  -5.38958   AGTTATAAACAAAAA          CGCGGG-TCA CTTC TGAACCCGCG           TTTTTGTTGTCTTCT 100 39
        ycaO 1349796 .. 1349846 -  -7.3  -5.41359   AATTAAAGTAAAAAA TCAGGTTAACTTG-TCGTTTT-TGT GTT ACTTAAAACGAACAAATTAACCTAA TATTTACGTTTATTG  91 54
        focA NONE
        pflB 1346304 .. 1346323 -  -7.8  -4.33819   ACCAGTTATAATAAA            GGCCCC GAAACAGA GGGGCC             TTTTAGTTTAAGTTA  79 74
        pflA 1345485 .. 1345504 - -12.2  -5.27335   CGGCGCAAATAAAAA            CAGCACAC CGGA GTGTGCTG             TCAGCAATAACAGTG 100 48
JA116_RS06090 1343560 .. 1343579 -  -5.6  -5.03145   GAACTCCGGAAAAAA            GAGGGAGC AGGT GCCCCCTT             CAAAAATAATTACTG  82 35
JA116_RS06085 NONE
JA116_RS06080 NONE
JA116_RS06075 NONE
JA116_RS06070 NONE
JA116_RS06065 1338087 .. 1338097 -  -8.2  -4.30995   GGTGTCAGAAAACAA                 CCGG AAG CCGG                 TATAAAAAGAGATAA  82 79
JA116_RS06060 1336668 .. 1336691 - -14.6  -5.26316   TGATCTGATAAAAAA          TCCCGCCGGT GTAA ACCAGCGGGA           TTTTTTTATCTGTAT 100 49
        trxB 1327325 .. 1327344 -   -10  -4.35116   CATGGTACACGAAAA            GGCGCTAC AGAT ATAGCGCC             CTGATAATGCAGGAT  93 40
        cydD NONE
        cydC NONE
         aat 1322912 .. 1322933 -  -3.7  -3.12668   TTTCAAACCGCAAGA           TAATGCCGA AAAA CCGGGATTA            TGTAAAGGAATGATA  48 111
        infA 1322580 .. 1322624 -  -7.8  -5.07275   GTACAGACATAAAAA CGATCACCACAGGACGCGCAC TTCG GTGCGTTGCCTGTGGTG-TCT TTTTATGAGGCGTGG  95 51
        cspD 1319277 .. 1319324 - -11.5  -4.09243   CACACCGGCTGAAAA TACGAATACGTCGCGG-AATGAC GATT GACATTACCGCGACG-ATCCGCA TAATTTTGTAAAATA 100 114
JA116_RS05975 NONE
JA116_RS05970 1311842 .. 1311861 -  -2.9  -4.44667   CGCCGTAAGAATAAA            TATGCAA TTATTT CTGCATA             AAAAACTACTAAAAA  61 68
        artP NONE
        artJ NONE
        artQ NONE
        artM 1308850 .. 1308876 - -14.5   -5.7946   GCCGGAATAAAAAAA        CGGGGCTG-CGT ACAG ACGTCAGCCCCG         TTTTTGTATGAGCGG 100 42
JA116_RS05930 1306297 .. 1306320 - -14.6  -4.47977   AAGAAGAGAAAACAA          GCCGTTCCCC TGGC GGGAAACGGC           AGTATAGCTTAGCTG 100 34
        ybjG 1305281 .. 1305310 -  -6.4  -3.16668   TAATACTGTCAGCAA       TCTCATACCGGC ACACCG GCCGGTATTAGC        GGATTTATGTTTGTA  57 44
JA116_RS05920 1303028 .. 1303047 -  -9.3  -5.61596   ACGCGGATAAAAAAA            TACCGGC GTGCGG GCCGGTA             TTCTCTGACTCATAC 100 146
JA116_RS05915 1300764 .. 1300785 -  -4.3  -3.27786   GTGAAAATTCACGAA           GCCGTTACT TTTC AGTTCCGGC            TGATTATTGTTGTTG  51 78
JA116_RS05910 1299290 .. 1299313 - -16.8   -4.8048   TCCTGATATGAAAAA          CCCCCGCAAT CTGC ATTGCGGGGG           TTTTTGCAGTCATCA 100 53
JA116_RS05890 1295472 .. 1295490 -  -5.9  -2.61383   ACGCTGACGGAGAAT             TCGCCGG TCGAT CCGGTGA             CTGAATCAGCCAAAG  50 460
        hisL 1294740 .. 1294766 - -17.4  -5.64274   TTAGGTATAAAAAAA         CCCCCGGAAAAA AAA TTCTTCCGGGGG         TTCTCTATTACACGC 100 64
        hisG NONE
        hisD NONE
        hisC NONE
        hisB NONE
        hisH NONE
        hisA NONE
        hisF NONE
       hisIE 1287566 .. 1287594 -  -3.9  -5.08601   TTACGGCAACAAAAA       CAG-CGGGCAAA AAAGGA TTTGCCCGGCTT        TCGGATTAACGGTGA  77 31
JA116_RS05835 NONE
JA116_RS05830 1286278 .. 1286293 -    -9  -5.24531   ATGTTTTATAAAAAA              GGAACC TTAT GGTTCC               TCAGACCCGCCGCGC 100 53
JA116_RS05825 NONE
JA116_RS05820 1284833 .. 1284857 -   -13  -3.83154   CAACGATAAGCTAAA          GGATATGTGC TATTT GCACATATCC          TTTGAAATAACGTAT 100 10
JA116_RS05805 1281059 .. 1281098 - -10.2  -5.09762   GTGGAATAAAGAAAA  GGAAACAGGGTGATTA GAACAAAT TCATCACCCTATTTCC   ATTATATTTTATAAT 100 47
JA116_RS05800 NONE
JA116_RS05795 NONE
JA116_RS05790 NONE
JA116_RS05785 1276014 .. 1276045 - -19.6  -3.61764   CGATTAACTGTTAAA      TAATAACGCCGCCG GAAA CGGCGGCGTTATCA       TCATATCGTGCGGGT 100 40
        gndA 1272729 .. 1272755 - -13.7  -4.70659   TCTGATAGTTAAAAA         CCGCGCAGACC GGTCT GGTCTGTGCGG         TTTTTCAAATCATAA 100 54
JA116_RS05770 1271821 .. 1271842 -  -5.8  -2.72049   CACAGTTCTGAATTA           TTCCTCCG TCAATC CGGCGGAA            GATTCATTATTCATT  52 1
JA116_RS05765 1271453 .. 1271469 -  -9.4   -5.9003   AAAGCAATAAAAAAA              CCCCGT ATCTG ACGGGG              TTTCGCTTTATAAAG 100 50
        metG 1262566 .. 1262583 -  -9.1  -5.79595   TTTTAAAATAAAAAA             CCTGCAC CAAA GCGCAGG              TTTTTTTCAGTTTAT 100 56
JA116_RS05710 NONE
JA116_RS05705 1259379 .. 1259408 - -15.3  -2.91264   GCGGGTAGTTATACA       TAATGAACGTGAT TCTT ATCACGTTCATTA        TGAAACTAATGAAAC 100 79
         cdd 1258402 .. 1258432 -  -7.7  -3.72241   GAGTAATCACGTAAA       GGTTGATACCC GGAACCGGT GAGTATCAACC       TCAGAAAGGAAGGAT  70 40
JA116_RS05695 1256508 .. 1256523 -  -7.5  -5.14525   AAAAAAAAGATAAAA              CCCGC ACAGAG GCGGG               TTTTCAGTGACAGTT  90 54
        sanA 1255594 .. 1255613 -  -9.2  -3.55444   TGGTTATGGCGGAAA            GCAGCCGG TAAA CTGGCTGC             CCGCTGAGATGATGC  76 40
        moeA NONE
        moeB 1249582 .. 1249594 -  -4.8  -2.92475   TCCATCTGGATAAAC                CGGA GACTA TCCG                TTACAGCCGCACACT  47 19
JA116_RS05640 NONE
JA116_RS05635 1242902 .. 1242918 - -10.9  -5.72616   ACTGAGATAAAAAAA              CCTCATC ATG GATGAGG              TTTCTGTTTTTCAGA 100 54
        rhtA 1240661 .. 1240675 -  -8.5  -3.72588   GAATCGATAGGCAAA               CCGGC ACAAG GCCGG               TTTCAGTATGGCAGG  73 44
         dps 1239897 .. 1239914 - -11.3  -5.85011   TAAAAAGTAAAAAAA             TACCGCC CGGA GGCGGTA              TAAAGGGTAGGATTG 100 144
JA116_RS05610 NONE
JA116_RS05605 1238607 .. 1238621 -  -4.2  -3.53091   ACCGGCTGGTGGAAA               CCCACT GTC AGCGGA               TACGGGACGGGCAGA  51 410
JA116_RS05595 NONE
        sseA 1235642 .. 1235668 - -13.1  -5.80248   TAACAGATAAAAAAA        TGCCGGAGTCAC TGAT GTG-CTCCGGCA         TTTTTTTATGGTTCG 100 31
        cecR NONE
        hlyD NONE
JA116_RS05560 NONE
JA116_RS05555 1228165 .. 1228175 -  -2.4  -2.60075   TTCTCCTTAATCAAG                 CCGG CGG CGGG                 TTTTCAGGGCGGTCA  40 6
JA116_RS05550 1226922 .. 1226941 -  -5.2  -4.15998   ATGTAAATTAAAGAA            TTTAAAAT TCTA ATTTTAAA             AGGAGGATTCTTATT  65 132
JA116_RS05545 NONE
JA116_RS05540 NONE
JA116_RS05535 1224833 .. 1224844 -    -3  -3.77831   GTATCAATATTCAAA                GAAA TAGC TTTC                 CTGTAAGATTATAAC  53 98
JA116_RS05530 1223768 .. 1223785 - -12.7  -4.07618   TGTGTAACAATGAAA             GGCCGGT GAAA ACCGGCC              TGAGATTGCTGACAA 100 196
        yvcK 1218328 .. 1218345 -  -4.8  -4.59424   AAAGGCAAAGGAAAA             GCTGCC GCGAAA AGCAGC              GATTACCAGCGTATG  72 187
        bioA 1210809 .. 1210836 -  -9.8  -4.55798   CAGGCGAAACGAAAA        GCATGCGCGTCA GGGA TGACGCGCCTGA         GCGTACAGGGAGGTA 100 109
JA116_RS05455 1208663 .. 1208680 -  -8.5  -6.01369   GAAATAATAAAAAAA             TGCCTTT ATTA AAAGGCA              TTTTTTATAGTTCAT 100 54
        modE 1203473 .. 1203499 -  -9.4  -4.28548   AGTTACTGACGAAAA        GCCGCCGCCAG TTCAGT CCG-CGGCGGC         TTGTATTATCAACAC  88 34
        modF 1197818 .. 1197831 -  -5.3  -4.45068   ATTCTTAATAACAAA               CTGAA TACA TTCAG                AAAATAACGGCTGTT  70 83
JA116_RS05390 1196488 .. 1196512 -  -7.3  -3.64103   GAGGTATAGGCGAAA          TCAAAAGAGAA GCC TTCTTTTTTGA          GTAACTGACCAGCCT  68 396
JA116_RS05365 1191368 .. 1191384 -  -6.5  -2.85402   TAAATCAGTATTATA              TCGTGCC GTT GGCAAGA              GAGTACGGGTCGTTA  55 379
JA116_RS05300 1182581 .. 1182598 - -11.3  -3.84406   CGTTTATGACAACAA             GCCGTTC ATCT GAACGGC              TTTTTTCTTTTCTGT  95 53
JA116_RS05235 1166727 .. 1166750 - -12.6  -3.48822   GACAAGAATGCATAA          TAAAACCCTC CGGA GAGGGTTTTA           TAAGGACGGATGCGG 100 49
JA116_RS05225 1164643 .. 1164660 - -12.7  -4.57882   CGTAACAAGAAGAAA             GCCGGTC ATCT GACCGGC              TTTTACTATATGGTT 100 49
        ybfF 1159907 .. 1159925 - -13.8  -4.20516   CCGTCAGTGAATAAA             CGCCGCCG TGA CGGCGGCA             CCGGTATCAGGCTTT 100 32
        ybfE 1158999 .. 1159020 -  -3.1  -3.87815   TTTCATCTTTATAAA           TACTATTCT GACG AAAACAGTA            TTTGAAGTCTGTCAA  53 60
        fldA 1158391 .. 1158401 -  -5.4   -3.3506   CTTAAATTGCCAGAA                 TCTC GTC GAGA                 CTCATTTCTTCGCGG  55 1
         fur 1157706 .. 1157720 -   -10  -5.66338   AAACACAATAAAAAA               GGTGCA TTA TGCACC               TTTCATACAATTCGG 100 54
        nagB 1152477 .. 1152495 -  -8.8  -5.31072   ACAACACAACAAAAA             CCGCCC GGATAAA GGGCGG             TCAGCATCGGTTATT 100 36
        nagA NONE
JA116_RS05155 1149875 .. 1149899 -  -4.3  -2.79302   ATTATGCGGATTACA          GCCAAAAGC GTCAACT GCTTTTTGC          AGATATTTTGATGAA  46 136
JA116_RS05150 NONE
JA116_RS05145 NONE
JA116_RS05140 1149459 .. 1149491 -  -2.5  -3.18024   TGCCAGGATCAAAAC      CTGGTGCCTTACCGC TTG GCGATACCCCACCTG      AAAAACGAGGCTTAT  44 70
JA116_RS05135 NONE
JA116_RS05130 NONE
JA116_RS05125 1149170 .. 1149198 - -13.9   -3.2511   CCGGATTCAGAAAAG        CAAAAAGCCCGTC AGA GACGGGCTTTCAG        AATTTGGCTGGGGTA 100 30
        miaB 1146094 .. 1146123 -  -5.7  -3.05384   GTTTCTGTCACTGAA       TCTCTCTGTGTAT TCTC ACGCGCAGAGAGA        TCTGCGCGTGACGGG  54 47
JA116_RS05110 NONE
        ybeY 1144510 .. 1144541 -  -9.6  -3.93288   CCCGATTTAATGAAA      GATGCCG-TATTATG TAG CATAAAAACGGCATC      GCTGACTACGCTTTT  83 31
        corC 1143571 .. 1143595 -  -2.1  -2.72511   GCCACTGGCGTAAAC          CCTGAGGTGAT TTC ATCATGTCAGA          TTATCTTCATCCAAA  40 16
         lnt 1141982 .. 1142007 - -13.3  -4.98531   GTCTGAAATGAAAAA         TCCCGCGGTGA GCAA TCACGGCGGGA          TTTTTTTTATCTGCG 100 54
JA116_RS05070 1136794 .. 1136813 -  -7.2  -3.21395   ACTCCCTGTATAAGA            CGGATAACC AGT GGTTA-CCG            GACAGATAGAGTATT  62 164
JA116_RS05065 NONE
        gltK NONE
JA116_RS05055 1134588 .. 1134606 - -12.4  -4.58859   AAAGAGAAGAAGAAA             GGCCGGTC TGT AACCGGCC             GGTCAGAACATCAGT 100 36
        lptE NONE
        holA NONE
        nadD 1129554 .. 1129567 -  -3.7  -4.11216   TTGTGATTGCCAAAA               CCCGG CAGG CAGGG                TGAGTCAGCGGTAAA  60 30
JA116_RS05025 1128120 .. 1128139 - -10.7  -3.55801   ATGAACTGGCGGAAA            CCGCTGC GGTCTG GCAGCGG             GAACTGCTGACCGCA  78 274
        rsfS 1127276 .. 1127288 -  -3.3  -3.09492   GCTGTAACTTCAACA                CTCAG CTC CAGAG                TTTCTCTAATTCATA  46 14
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA 1122689 .. 1122717 - -14.7  -4.85782   CCGGTGAAAAAGAAA        CGCTATCATAGCA AAG TGCCATGACAGCG        CGTAGTGTTATCACT 100 49
        dacA 1121446 .. 1121458 -  -3.3  -2.73364   TCTTCAGCCGAACCA                GCGGT GAA ACAGC                AGGCGGATATAGTCG  42 1
        ybeD 1121052 .. 1121081 - -14.3  -3.14132   CTGCTTTGTCAGCAA       GTTCAGGCCGCCC TGAA AGGCGGCCTGAAA        TGATGAAGAAATAAC 100 45
        lipB 1120134 .. 1120156 -  -2.9  -4.59853   TCAATCTTTTAAAAA           TCTTTTTAA AAATG TTAAAAAAA           TTATATCACTATTCT  64 34
        lipA 1119020 .. 1119039 -  -9.2  -5.61596   AGCGGCATAAAAAAA            CCGCCGTT TTTC AGCGGCGG             TTTACGGTATTCACA 100 54
JA116_RS04970 1117996 .. 1118019 -  -5.3  -4.26076   TTACCGTGACGAAAA          CCTGTTACT CACCAT AGTAACGGG           TTTTTTTTATATCAG  68 37
        nrdH NONE
        nrdI NONE
        nrdE NONE
        nrdF 1111622 .. 1111655 -  -5.5   -5.1861   TTTATGAGCAAAAAA     TGCACTGATAT AAATATGCTGCA ATATCAGTGCA      TTAATAAAACCGGTG  81 75
        proV NONE
        proW 1108715 .. 1108759 -    -2  -3.28712   CTGCCGCCGCGATAA CAGCGGCAGGGTGATAATGAT CGGG AGCAAAA-CTCCCTGTCGCTG CCGCGGATTACGGTG  45 33
        proX 1107637 .. 1107658 - -14.5  -5.86061   GTTGAGGAAAAAAAA           GCGGCCATA TCGC TATGGCCGC            CGGACGGATTTTTCA 100 48
JA116_RS04915 1106258 .. 1106271 -  -8.1  -4.62069   TTTTGAGTTTAAAAA               GCACC GGAA GGTGC                TTTTTACGGAGGAAT  86 40
        mprA 1105103 .. 1105149 - -12.4  -3.70139   TAACCGCAACAAAGA CAGGCTTGCTATTGTCGTCA CTGTGGT TAACGACAACTGCAAGCCGG GATGGTCAGCACATC 100 162
        emrA NONE
        emrB 1102011 .. 1102026 -    -9  -6.00086   ATATTATAAAAAAAA              CCATGC CGGA GCATGG               TGCAAAAATATGCAT 100 321
JA116_RS04895 1101419 .. 1101434 - -11.8  -3.66999   AGTGATTGATTCAAA              CCCGGC ATTT GCCGGG               TTTTTTAATCGATCA  93 30
JA116_RS04885 NONE
JA116_RS04880 1096520 .. 1096530 -  -3.2  -3.23447   TGAATTTTGACAACA                 TCAC AGT GCGA                 ATTATCTCTTTAGTT  46 199
JA116_RS04870 1094549 .. 1094565 -  -8.1  -2.70932   TTGTTGTTTTAATGA              TGAAAGT ATT ACTTTCA              TATCGGTGTTTTTTA  60 224
JA116_RS04865 1090675 .. 1090690 - -10.4   -5.2422   AACCAGATGAAAAAA              GCTGCC ATAA GGCAGC               TTTTTTTTCAGGTTC 100 51
JA116_RS04855 1088432 .. 1088447 -  -3.3  -2.78813   CCTCATTGCAATAAT              GGAAA TATTAC TTTCC               GGTAAATTGTTGTAA  43 17
        tssB NONE
        tssC 1086244 .. 1086265 -  -4.6   -4.0251   ATTACGACAATTAAA           TATATTTC TGATAT GAAATATA            GATATCATTTTCTCG  61 100
JA116_RS04840 1085613 .. 1085668 - -11.6  -4.35524   TCCGTAAAGGGAAAA CCATACCGCAATACATTATTTATCCGT CTT ACAGATAAATAATA-ATCGCGACATAG TTTTCCTGTATTACA 100 46
JA116_RS20220 1085130 .. 1085164 -  -5.7  -3.53224   TATCCTGTCGTTAAA    GTCAGTGTGCCGGATC AGAT GACGCGG-ACACTGCC     GTATGAATAATCCAG  59 180
        tssF NONE
        tssG NONE
        vgrG 1079787 .. 1079822 -  -8.2  -3.91897   TGCTTCAGTGACAAA    GTGATCAGGGGCGGAT AAAT AACTGCCCGCGATCAC     ACTGATACCGGACCG  77 118
JA116_RS20215 NONE
JA116_RS04800 NONE
JA116_RS04795 NONE
JA116_RS04790 NONE
        tssJ NONE
        tssK NONE
        icmH NONE
        tssM NONE
JA116_RS04765 1068244 .. 1068262 - -13.2  -5.59357   ATCACAGTAAAAAAA             TACCGGGA AAA TCCCGGTA             TTTTTTTTGTCGGAT 100 40
        bamD 1049537 .. 1049566 - -15.3   -3.7821   ATCATGACAAGACAA       TAAAAAAGCCATC CGGA GATGGCTTTTTTA        ATCAGATGAGTAAAA 100 47
        raiA 1048889 .. 1048905 - -15.1  -6.23209   TCAACCAAAAAAAAA              CGCGCCC GGA GGGCGCG              CAGAGACAAAACTCA 100 55
        pheA 1047382 .. 1047402 -  -6.8  -5.05606   CCGAATAAAAATAAA            GGGTGCAG TTTAC CTGCAACC            TCTGATGGTGACAAA  86 132
        epmA 1046330 .. 1046347 - -11.3  -6.23317   ATAAAAATAAAAAAA             GCGGATG ATAT CATCCGC              TTTTTTGTCATGTTT 100 55
JA116_RS04640 1039161 .. 1039171 -  -5.4   -2.7035   GTTATGCATACAGCA                 TCAG TTC CTGA                 AACAGGCGGTGCCCG  49 1
JA116_RS04635 1037756 .. 1037778 -  -9.9  -5.71712   CCGGATACAAAAAAA          CCTGCG-GCA GCAA TGCACGCAGG           TTTTTTTATGGTGAC 100 50
        pepD 1018568 .. 1018589 - -15.9  -5.06505   AAGCACATATAAAAA           CGGCGGAAC AGAT GTTCCGCCG            CTGAACTGAATGCCG 100 44
JA116_RS04525 1016349 .. 1016386 -  -5.9  -3.79668   ATGTAACGCATTAAA   TAAGAGCGATATTT-ATA GTT TATCAAATGTCACTCTTA   TTTTTCAGTACCTCA  63 70
JA116_RS04520 1015239 .. 1015268 - -10.8  -4.84673   TTAAATAATATAAAA       GGCGCCTTTG TCAGCAATCT CAAAGGCGCC        GGTCAGGCGCCTTTG 100 80
JA116_RS04475 1006555 .. 1006584 -  -3.5  -5.28942   CAGCTGAAAGAAAAA       TACCCGCAGCCACC GCA GG-ATCTGCAGGCA       GTATTCCGTGATATG  84 310
        fadE 1002456 .. 1002489 - -10.9  -2.75975   CGGTAAGACAGAGCA     GTCATGGCGGAGCAG GGAA CGGCTCCGCCATGTT      ATTTTATACGCCGGG  77 29
JA116_RS04440  997581 ..  997599 -    -3  -3.09018   TGAGTATCTGAAAAC             CGGGCG TCTGGTG CGCCTG             TTTCCGGAATACCGG  43 177
JA116_RS04430 NONE
JA116_RS04425 NONE
        rsmE NONE
        gshB NONE
JA116_RS04405 NONE
        ruvX  991561 ..  991579 -  -5.8  -3.76125   GCATGGTAAGGGAAA             CGGCGCGC CCG GCGTGCGG             GATAATCAGCCGTAA  63 31
JA116_RS04390  989777 ..  989788 -  -2.2  -3.85698   CCGGTTTGTGATAAA                GCAC TAAG GTAC                 AGGAAGGTCATGATA  51 49
JA116_RS04385 NONE
        rdgB NONE
        hemW  987420 ..  987441 -  -8.6  -5.29445   TCTGAATAATAAAAA           CCCGGGCG TGAAAG CGGCCGGG            TTTTTTGTTTTATAA 100 35
        mutY  982141 ..  982151 -  -4.6  -2.94422   CATCCTCAAAAATAG                 GGGC TTT ACCC                 GATTTGCTTAAGCAA  50 20
JA116_RS04340  981816 ..  981842 - -12.4  -3.60525   CGGAGGCAGATACAA         CATCAGAGCC GGAAAAA GGCTCTGATG         ACAGGATTATTTTTC 100 32
        mltC  980665 ..  980701 - -10.2  -4.30441   TCATAACACGTAAAA    TTACCGGCGGACAA TTGCAGATG CTGTCCGCCGGAAA    ACTTAACGGCGGTAG 100 28
JA116_RS04330  980425 ..  980440 - -10.4  -5.37593   CCGGAAAGCAAAAAA              CCAGCC CGAA GGCTGG               TTTCTTTAATTAGTG 100 39
JA116_RS04305 NONE
JA116_RS04300 NONE
         rnz  974401 ..  974411 -  -5.4  -3.21778   CCACTATATCAAAAT                 CTGT GTA ACAG                 TGATAATCACGCCGG  53 52
JA116_RS04290 NONE
JA116_RS04285 NONE
        lldD  970286 ..  970303 - -11.3   -5.8901   ACACAAAACAAAAAA             GCCACTC CGGA GAGTGGC              TTCAGAAGAAAAGTA 100 51
JA116_RS04275 NONE
JA116_RS04270  967381 ..  967411 -  -8.8  -4.82901   GTGTTGTCATAAAAA       GCCTCAGCGGGAGC GAA GCTCCCGCCCGGGA       ATACCGGTCAGTTGT 100 49
JA116_RS04265  966561 ..  966573 -  -5.5  -2.87405   ACATGAACAATATTA                GCGCA TTA TGCAC                CTTTGCGAAATGCCG  50 18
JA116_RS04260  965550 ..  965579 -  -9.3  -3.93695   GTGACCAGTCACAAA       TGCCGTCTGTCAT CGTG ATGAAAGACGGCG        TGCCGCGCAAACATG  78 213
JA116_RS04250  964196 ..  964220 - -14.4   -5.5074   TAACGCAATAAAAAA          GCCGGAAACA CAGAT TGTTTCCGGC          TGACGGCTGTTTTAC 100 72
        betT  961797 ..  961820 - -19.6  -6.50278   AAAGGAAAAAAAAAA          CGCGCCGCTC AGAT GAGCGGCGCG           TTTTCAGTGACAGAT 100 41
JA116_RS04235  959598 ..  959623 -   -14  -4.45083   GGGAGAGTCAGAAAA         TGCGGCCGCC GGAAGA GGCAGCCGCA          TGGGGTGGTCAGCGG 100 44
        hpaC  958920 ..  958946 - -15.4  -2.96249   TCTGATGAATAATGA         TTCGTTAACACA TGA TGTGTTAACGAA         TTCTGTAATGATAAA 100 49
        dtpB  957005 ..  957019 -  -9.2  -5.77677   GAAAATAATAAAAAA               CCCGGA TAG CCCGGG               TCCTGAAGAACAGCT 100 99
JA116_RS04185  949088 ..  949100 -  -3.3  -2.61831   GGGACGGGAAAAACC                GGGCA TAG TGACC                TCAGTGTATTGCATT  42 26
JA116_RS04180 NONE
JA116_RS04175  947142 ..  947161 -  -7.8  -2.66034   AGAAACTGTACATCA            TCCGGCAG ATAA CTGCCTGA             GAACGGGGGGGAAAC  60 40
JA116_RS04170 NONE
JA116_RS04165  945034 ..  945063 -  -6.5  -2.79574   GAGACTGAGTAACGA       TTATC-GCGGAACA GCC TGCGCCGCAGATAA       CTGTACTATTTAATC  55 118
JA116_RS04160  944466 ..  944498 - -19.3  -3.61398   TTGTTGCGTGAATAA      CAAAACCGCCCGGTA TTT TACCGGGCGGTTTTT      TTGTATGAATTATTT 100 35
JA116_RS04115  930050 ..  930074 - -17.3  -3.46602   TCCGCCACATTATAA          CGCCATGCTAT TCA ATAGCATGGCG          TTTTTGTTTTGTGGT 100 116
        gloB NONE
        mltD  925506 ..  925524 - -11.7  -5.43414   ATCAGATATAAAAAA             GCCCTGC ATCAG GCAGGGC             TTCGGATACGAGAGA 100 46
        mtnN  911731 ..  911750 -  -2.9  -2.75481   GGCGAAGCGCAATGA            TCGTCTGA TCATT TCAG-CGA            ATCAATATTGGCGAG  42 14
        btuF  910873 ..  910893 -  -6.8  -3.61902   GTTTATTACAGATAA            GCCACCCA TACAG CAGGTGGC            ATTAACGCCGCTGAT  65 62
JA116_RS04020  907916 ..  907941 -  -9.7  -4.49556   GCGGTATGAAACAAA         GATCCGGACGC TTTT ACGTCCGGATT          TTTTATCAGCGGGTG 100 31
JA116_RS03980  899714 ..  899741 - -14.2  -4.38927   TCCGCAGATAACAAA        TAAAACGGGCGC TTTT GCGCCCGTTTTG         ATATTGCTGACAAAG 100 86
        hemL  897792 ..  897812 - -11.1  -5.65496   GACGAAAAACAAAAA            CGCCCGG GCAGATG CCGGGCG            TGACGGGTTATGCGG 100 43
JA116_RS03965 NONE
JA116_RS03960  896835 ..  896853 -  -8.2  -3.90002   GATGAAAGCAAAACA             CAAACAGA AAT TCTGTCTG             CTCAACCGGCCGGGG  74 291
JA116_RS03930  890636 ..  890649 -  -3.9  -2.91465   AAGGTAAATTTAAAT               TTGAT TCAG ATCAA                TTAAACAAAATACAC  46 115
        fdnG NONE
        fdxH NONE
        fdnI  885807 ..  885844 - -15.6  -5.42265   TTAAACCATAAAAAA   CTGCGCCGCATTCGTT GCATTG AACGTTTGCGGCGCAG    TTCACAGTTAAAAGC 100 50
JA116_RS03910 NONE
JA116_RS03905  884509 ..  884521 -  -2.6  -2.84687   CCAATTACGATGACA                GGAG TAATT CCCC                TGACAAAGTGATATT  42 396
        sfsA  876468 ..  876478 -  -6.8   -2.5294   CATGTCTGACAATAT                 CCCT TAG AGGG                 GAAAAATAGGCCGCT  55 168
        dksA  875940 ..  875966 - -13.7  -4.91459   GAAGAGGCAGAAAAA         CGGACGGCGCT GTTAA AGCGCCGTCTG         TGGTGAACCTGTCAG 100 37
      gluQRS NONE
        pcnB NONE
        folK NONE
        panC  871873 ..  871888 -  -8.2  -4.48221   CAGGAACTGACAAAA              GCCCGC TATG ACGGGC               TTCTGGCCTGGTTCC  85 100
         can  862847 ..  862864 - -12.7   -5.0916   TTGTGAATATAAAAA             CGGCACC TGCG GGTGCCG              TTTGCTTTTACAGTG 100 42
JA116_RS03800  859858 ..  859880 -  -2.8  -2.52491   CAGAGAGGGATCAAT           TATTGACAGA GGT TATATCAATA           TAGCGGGTGATAATC  41 111
JA116_RS03795 NONE
JA116_RS03790  857628 ..  857644 -  -5.2  -2.67441   GAAGGTAGTAGATGA              CTAAGA ATAAG TCTTAG              TTTTCGTGATTTTCA  49 22
        uhpC NONE
JA116_RS03780  855143 ..  855168 - -11.1  -4.68512   TTATAATAAAAACAA         GACCGCGCGGCA GAA CACCGCGCGG-C         GGACAACATTATTTA 100 34
JA116_RS03775 NONE
        fbpC  851888 ..  851907 - -13.6  -5.72616   AGTGAGATAAAAAAA            CCGCTTCC GTAA GGAAGCGG             TTTTGTATTCAGGGA 100 45
JA116_RS03760  849547 ..  849568 -  -7.3  -3.63839   GGAGTAAATAATTAA           GCGTAGTAA GTCA TTACTCCGC            TTTTTTCACGGTCAG  68 17
JA116_RS03750  848036 ..  848061 -  -9.9  -3.87373   GAGATTGCTGACAAA         GCAGGATAAAAC GTG GTTTT-TCCTGC         TTTGTGTTATCAGCT  84 145
JA116_RS03740 NONE
JA116_RS03735  845034 ..  845057 -   -14  -5.86061   TTTTATGAAAAAAAA          TGCCTGCAAT ATAT ATTGCAGGCA           CCTGGTGTTGACTTG 100 56
JA116_RS03725  842673 ..  842686 -  -5.3  -3.48276   CTCCCGGTCAGATAA               CAGAA TCCG TTCTG                TCATGGTGTGTCTGC  57 26
JA116_RS03720  840039 ..  840070 -  -6.5  -3.04792   GTACGATGGGGAATA      TTCCGCGTCCGGA CTTTAT TCCGATTGCGGAA       AAGGGCGGCAATATT  53 496
JA116_RS03695  834427 ..  834447 - -14.1  -2.58544   GGGTATTTTCAGAAT            CCGGAGAAA AAC TTTCTCCGG            GGAATAAAAAATAGG  95 334
JA116_RS03690  832966 ..  832982 - -15.1    -5.243   GAAAGCATGAAAAAA              CCGGCCG GTG CGGCCGG              TAAAGGAAAGGGGGC 100 68
JA116_RS03675  828408 ..  828427 -   -10  -4.59773   GTGCAGGCTGAAAAA            GCCCGCGAC TGG GT-GCGGGC            ACATGCGGAAACCCC  95 429
JA116_RS03650  823013 ..  823026 -  -8.1  -2.80443   TCATAGCTCATTATA               TCCGG CTTT CCGGA                ATATGTGACTACCAG  61 263
        xdhA NONE
        xdhB NONE
        xdhC  814322 ..  814345 -  -6.6  -2.96216   TTGCAGCAGCAGACA          CCGCAACCCTG ACG CCGGGC-GCGG          TATCTGTTTTCTGCG  58 43
        ygeW  809545 ..  809564 - -16.4  -4.18506   TCATCGGGAAAATAA            CCCGGCCG GTGA CGGCCGGG             CTCCGGATTTATAAA 100 34
        dpaL NONE
JA116_RS03595  807039 ..  807060 - -13.7  -4.58395   GGTACTCCTGAAAAA           GCCCCGCAC ATCT GTACGGGGC            CGGTAAGACATAATT 100 39
        hydA  805620 ..  805632 -  -4.8   -4.0257   CGGAAAAATTAATAA                CACC GGTGT GGTG                CTTTAAACGGACGGC  61 6
        arcC  804585 ..  804603 - -17.4  -4.21744   AGGTAACAAAGCAAA             CGGCCGGG GTT CCCGGCCG             TTTTTCACAGAAAAA 100 57
JA116_RS03575  801416 ..  801440 - -17.2  -2.94099   GCGCTGTATCAGATA          CTGACGGCGG AATAA CCGCCGTCAG          TCTGTTTTTAAATAG 100 33
JA116_RS03570  800325 ..  800337 -  -9.1  -4.58395   GGCACGTCGGAAAAA                CGCAG TAT CTGCG                GGCACTCGATGGGCG  90 436
     tetR(D)  796708 ..  796735 -    -4  -4.65819   AAAAGGAAACGAAAA        GCATGCGTGTCA TGGA TGACGCGCCTGA         GCGTACAGGGATGTA  68 70
JA116_RS03535  793502 ..  793527 -  -6.7  -5.26907   TAATATAAAAGAAAA         TCCGCCGTCCG TAAC CGGTAAGCGGA          ATATCGTTTTTTCGG  95 208
JA116_RS03520  791220 ..  791248 -  -9.6  -2.59431   CGTGCTGATAACGGA       CTTTCCGGGTACG GCAG CGTACCCGGAT-G        ATTTCAGGCGCGGAA  68 29
JA116_RS03505  788003 ..  788015 -  -3.5   -3.6579   AAGTGATGTTAACAA                TTAAT GTT ATTAA                TGGGATGGATGTAAT  53 55
        ygfK NONE
        ssnA  783267 ..  783286 -  -3.4  -2.78384   GGTTTTTTTATTACA            GTGCGTCC ATCC GGGCCCAC             ATCTTTTTCGCGGCT  43 1
        ygfM NONE
JA116_RS03485  779519 ..  779542 - -18.2  -4.82901   CTCTGCTTACAAAAA          GCCCTCACCG GAAC CGGTGAGGGC           GGGTTGGTTTAATTA 100 38
        guaD  778150 ..  778164 -  -2.8  -3.08638   AGAATGAAATGAAAG               TGTGTT TTA ATCACA               GCATTGGTGGGCGTC  44 39
JA116_RS03475  776684 ..  776707 - -12.4  -3.36515   CTTTAGCGGCAAATA          CAGGGAGTGC TTTC GCGCTCCCTG           TGATGATAATAATTA  95 71
JA116_RS03470  776106 ..  776124 -   -11  -5.14563   CGGCGCATGAAAAAA             GGGACACA ACG CGTGTCCC             GTTTGCCTGAAAGTG 100 50
JA116_RS03455  773019 ..  773040 -  -3.6  -3.53091   ACGTCTCCCCGGAAA           CCCTGCTG GATAAA CAGCCGGA            CTATATCATCCTCGC  51 237
JA116_RS03335 NONE
JA116_RS03330 NONE
JA116_RS03325  747280 ..  747317 -  -3.4  -3.10597   GGTGGTAGGTAAAAG   GGCGGGATATGCCGCAG ACCGG CTGCGGCATAT-CAGAG   ATAGTGGAAAAATTA  46 38
        nirB NONE
        nirD  744131 ..  744161 - -12.5  -3.42883   AGAATAAACAAGACA       GGCGCGGTACAGG GGATA CCGGTACCGCGCA       ACAATAAAAAACCGT 100 112
JA116_RS03255  729300 ..  729310 -  -4.6  -3.31792   TGAGCAGTGTCATAA                 CACG CTC CGCG                 CCAGAGTAAACCAGT  53 9
        cbiB  728346 ..  728362 -  -2.9  -4.36914   TTTTCCCTTACAAAA              TCCACTG TGC CAGAAGA              TGAATGACGGCAAAT  59 1
        cbiD NONE
JA116_RS03235 NONE
JA116_RS03230 NONE
JA116_RS03225 NONE
JA116_RS03220 NONE
JA116_RS03215 NONE
JA116_RS03210 NONE
JA116_RS03205 NONE
JA116_RS03200 NONE
JA116_RS03195 NONE
JA116_RS03190 NONE
JA116_RS03185 NONE
JA116_RS03180 NONE
JA116_RS03175 NONE
        cobU NONE
        cobS  715117 ..  715135 -  -8.8  -3.99324   GCGGACCAGGATAAA             GCGGCTGA TGC TCATCCGC             TTACACCCAGAACAG  80 26
        cobC NONE
        cobT NONE
JA116_RS03150  712438 ..  712465 - -14.3  -3.11292   ACCGGTAACAGAAAG        TATGCCCTCTG TATCAG CAGAGGGCATA         TTTATTAAGACAAAA 100 30
JA116_RS03120 NONE
JA116_RS03115  703975 ..  703988 -  -5.3  -2.99471   CCATTTTTACAGATA               TCTGT TTTC ACAGA                CACCGGTTTTCGCTG  52 66
JA116_RS03105  702227 ..  702256 -  -7.3  -3.92001   TATATTATATAACAA       CCTGAAAATAACA GTGC TGTTATTTTCTGA        TAATAATCAATGTTA  72 109
JA116_RS03100 NONE
JA116_RS20205 NONE
JA116_RS03090 NONE
JA116_RS03085  697684 ..  697698 -  -7.1  -3.85698   CTCTGGTGGGATAAA               CGGCA GCGGG TGCCG               GAGAAATTTCTGGTG  66 290
JA116_RS03065  693397 ..  693413 -  -3.7   -3.8709   AAAGCCGCTCAGAAA              CTGGT TATTTAC ACCAG              TCATACGAGTGCCAG  58 236
JA116_RS03010  684659 ..  684683 - -11.5  -3.30124   GCTTATCTGTTACAA          CGAGCGTCA AGCATGA TGACGCTCG          AAGGCTGATCCGAAT  86 135
JA116_RS03005  683476 ..  683490 -  -8.6  -2.72344   CTCCACGCTGAATTA               TCAGAC ACC GTCTGA               ATTTGCAGCGGGCTG  60 336
JA116_RS02990  681012 ..  681030 - -10.3  -2.78463   AGGCCTCCTATTATA             TCGCCAC TGAGC GTGGCGA             GGTTATCGGGAAGTT  75 45
JA116_RS02980  679296 ..  679317 -  -4.5  -2.79915   ACTTATTTGATTATA           TGAGTAAAT GTGT AATTACTCA            AACATTCTAACTATC  49 19
JA116_RS02970  677828 ..  677839 -  -5.8   -2.7927   AAACACATCGAATCA                GCCT ATTT AGGC                 TATTTTTTCCACCAT  53 62
JA116_RS02965  676735 ..  676759 -  -9.3  -4.16681   AATATCACGCGAAAA          GCCGCGCAA TATACAT TTACGCGGC          TTCACCATGTTGTGC  85 221
        mutS  673941 ..  673960 - -13.6  -4.20084   ATTATTCATGCAAAA            GGGGGGAA TTTA TTCCCCCC             TTTTTCTTTTATCCG 100 45
JA116_RS02935  669591 ..  669612 -  -5.8  -5.50723   TGATTAAAACAAAAA           GGGCGGAA TAATAT TTCTGCCC            TTTTTTTTGTCCTGT  90 55
        queD  664311 ..  664324 -  -5.9  -3.62096   GCTGATGAGCTCAAA               CACCC GGTC GGGCG                GCAGCGGGATATTGA  60 207
JA116_RS02895  662271 ..  662291 -  -9.7  -5.74122   CAGGATATAAAAAAA            CCGGGTG TTTTATT CACCCGG            TTTATTGTTTGCTGA 100 58
        metN  652263 ..  652275 -  -3.3  -3.58726   TTCCTTCAGACATAA                CCGAG AAC CTCTG                TTTTTACGTGGTGTT  51 3
JA116_RS02845  651574 ..  651597 -  -4.5  -3.01712   TCGTTCTGTGTAATA          CGCGTTCGCA GTCAG TGCGG-CGCG          GAGAGTGTTTTACTT  50 35
JA116_RS02840  650649 ..  650668 - -12.2  -5.52079   ATAGCAAAACAAAAA            GGGTGAAC AATT GTTCACCC             TCAGTGTAATATTCT 100 89
        rcsF NONE
        tsaA  649342 ..  649353 -  -4.4  -2.64218   AGGTTCCATTAGAAC                GACA AACA TGTC                 TTATCGCAGAGGTAT  45 113
        proS  647549 ..  647583 - -12.5  -3.87869   GGAATCCGGCAGAAA    TA-AAAAAGGCTGAAC AAAT GTTCAGCCTTTTTGTA     TTCACCGCGCTGATA 100 42
         map NONE
JA116_RS02710 NONE
        glnD NONE
        dapD  619758 ..  619778 -  -6.9  -5.64274   GCACGGATAAAAAAA            TAGCGGA GTTATTA TCCGCTA            TTTCTGAGATTAGTC 100 35
JA116_RS02695  619252 ..  619280 -  -7.4  -4.22883   GATGACGGAAAATAA       CGCCGCAGCAGCC TGAC AGC-ACTGCGGCA        TTGTTTCATCCGGCT  73 39
        queF  615699 ..  615710 -    -3  -2.91395   ATCCCGTGGATAAAT                TGTA GTCG TACA                 GGTTGCGCGCTGTCT  44 44
        ppnN  614260 ..  614282 - -17.8  -3.58905   AGTCGCTATATATAA           TTTCCCCGCC GGC GGCGGGGAAA           CAGTTCAGAGAAAAA 100 44
         xni NONE
JA116_RS02655  612732 ..  612755 -  -6.7  -4.15543   TAAATATCGTTAAAA          TCCCGGC GGATCAGATT GCCGGGA           TTTTTTTATCACTTT  71 34
        csdA NONE
        csdE  607699 ..  607722 -  -2.2  -4.63218   GCCGCCGCAACAAAA          TTCCGCTGGT AACC ACCGGCGGTG           CGGGCGGGCAGATTG  66 384
JA116_RS02615 NONE
JA116_RS02610 NONE
JA116_RS02605  605477 ..  605496 -  -2.1  -4.25104   GTTTTTTCAGGAAAA            GTGACAG GAGAAT CTGTCAG             AAGAATGGTTGCGGG  58 31
        argA  602442 ..  602475 -  -8.2  -4.07687   AGCGGGCCGTGAAAA     CACCCACTCAGC GGTACAGCGG GCTGAGTGAGCG      CTTACGTTAGCCGGA  79 45
        thyA  587336 ..  587353 -  -7.7  -5.50723   TCATGAAAATAAAAA             TCCACGC AATT GCATGGA              TTTTATAGGTTTTCT 100 88
JA116_RS02545  585905 ..  585930 -  -3.9  -3.51279   AGATGCTAGAAAAAT         GCCGCTCTCAAT TTT ATGGTG-GCGGC         GTATGATCTCTTCCC  51 112
JA116_RS02525  578665 ..  578684 -  -7.9   -5.5112   GTGAGTAACAAAAAA            CTGCATC GTAACT GATGCAG             TTTTTTGTATCCGGA 100 252
        thiB NONE
        thiP NONE
        thiQ  571056 ..  571069 -  -9.5  -4.77165   CGGGTCAGAATAAAA               CCGGC TTCC GCCGG                TGCTGCCACCTGACG 100 130
        rapA  565590 ..  565612 - -15.6  -3.07227   TCACCAAATCAGAGA           CCCGGCAGAC AGT ATCTGCCGGG           ATACAGGTTACTGAT 100 33
        rluA  564411 ..  564425 -  -2.7  -3.96327   ACGGCGGAGCACAAA               GCGGC AATTG GCAGC               AGCAGTCTCAGCAGG  55 513
        surA NONE
        pdxA NONE
        rsmA  558142 ..  558152 -  -4.6  -2.53164   TTATTCATGATGAAT                 CCCC TAT GAGG                 CGGGATGTTCCGCCA  47 18
        apaG NONE
        apaH  556870 ..  556888 - -14.6  -5.49569   TATTAATACAAAAAA             GCAGAGCC ACC GGCTCTGC             TTTTTTCTTGTCTGT 100 54
JA116_RS02435 NONE
JA116_RS02430  554741 ..  554760 - -10.8  -5.73978   ACGATAAATAAAAAA            GGCTGAAT ATTT ATTCAGCC             TTTTTTATTTGGTTT 100 42
JA116_RS02385 NONE
JA116_RS02380  542006 ..  542032 - -17.4  -5.24129   TTTCGCTATAAAAAA         TCCCCGCGATAC CGG ATATCGCGGGGA         TTTTTGTTTCAGCCG 100 52
JA116_RS02365  539318 ..  539330 -  -9.1  -3.72893   GATGCTTCCACCAAA                CGCCT GAA AGGCG                AAAGCCGTCCTGTTA  76 344
JA116_RS02345 NONE
JA116_RS02340  532153 ..  532171 - -13.2  -5.63517   GCCTGAAATAAAAAA             GCCGTTCA TCA TGAACGGC             TTTTTTGTTGCCACT 100 15
        yqhD NONE
        dkgA  527512 ..  527548 - -12.6  -3.86194   AATCTGTCGGATAAA    TAAAAGCCATCAGTAT GATTT ATACTGATGACTTTCA    GGTAATAAAATAAAT 100 40
        rpsT  513466 ..  513479 -  -9.5  -5.75478   AAGGATATAAAAAAA               CCGGC GTGA GCCGG                TTTTTTTTGTCTGCA 100 49
JA116_RS02250  510144 ..  510160 -  -3.6  -5.67063   CGTATGATAAAAAAA              CCGGAC TAACT GCCCAG              TTTTGTCACAATTAC  89 14
        yaaA  501732 ..  501751 - -13.6  -3.29123   AAAACAAAAAGCATA            CTGCGCCA CGGA TGGCGCAG             CTGAATGACCCGGCT 100 42
        arcA  495411 ..  495439 - -16.7  -5.19212   AGCAGGATCAAAAAA        TCCCCGGTGACGC TGA GCGGCACCGGGAA        TATCGTATGATGTTA 100 54
        robA  493731 ..  493747 - -10.1  -3.38812   GCCGGGTGAACAAGA              CACCACC GGC GGCGGTG              TTTGTTCTGCGGGAG  76 44
        yjjX  492193 ..  492213 -  -2.5  -4.88795   ACGGAAGAAAATAAA            TTCAATCAG TTC CTGAATGAT            TACCGGACTGAACAT  71 133
JA116_RS02160  490224 ..  490234 -  -8.2  -3.56099   CAGAACTTCCTGAAA                 GGGC AGC GCCC                 GGCGGATGTACTGAC  67 486
        ettA  486022 ..  486062 -   -17  -3.07816   CTTTTATCCATCCAA  CCAAAAATGCCGCGCGGT TCCTC ACCACGCGGCATTTTCCG  TTATATGACCTACTT 100 35
JA116_RS02125 NONE
JA116_RS02120  480804 ..  480814 -  -2.4  -3.38832   GAGTAATAAATTCAA                 CCCG GTA CTGG                 CAATGATGCCGCTGG  45 360
JA116_RS02035 NONE
JA116_RS02030  463949 ..  463963 -    -5  -3.61774   CAGAAGACGCGGAAA               TGAGAA TTA TCCTCA               CCTGATAATCATTCT  57 46
JA116_RS02025 NONE
JA116_RS02020 NONE
JA116_RS02015  456599 ..  456622 -   -14  -3.94188   AGTTAGCGGAAATAA          TAAAGCCGCT ATTA AGCGGCTTTA           TTTTATTATGGCGGG 100 31
        rsmC NONE
JA116_RS01945 NONE
JA116_RS01940  441100 ..  441132 -  -6.4  -2.96235   GACACATTAATTATA      GGTGTATGATTTTA AGGTA TATAATCATGCACC      TTTTTTGCATTTTAT  56 426
JA116_RS01900  433445 ..  433472 - -15.7  -4.77173   TGCTGATAAAACAAA        CAGCCATACCG TGTCAC CGGTATGGCTG         TTTTCATTGTATTAA 100 37
JA116_RS01890 NONE
JA116_RS01885  428290 ..  428306 - -13.7  -3.74526   TTATTAAGTGAAGAA              GCCACCC ATT GGGTGGC              TTTTTTGCGTTTGGG 100 365
        fadB  416262 ..  416274 -  -3.3  -4.03234   CTTTTTCCATATAAA                CCTCA CTG TGCGG                TAACAGGGTGACTAT  56 15
        fadA  414954 ..  414974 -  -9.7  -4.90778   TTTATTTAAAGAAAA            TCCCGCC CCCTGAC GGCGGGA            GTATGCTGATAACAG 100 141
        rfaH  411224 ..  411241 -  -7.7  -4.96848   CGCGTCAGATAAAAA             CCGCCTGT AAT AC-GGCGG             TTTTTTGTTTCCGGG  95 54
        prfH  400404 ..  400423 - -13.6  -5.74288   ATAAAGAAGAAAAAA            GCCGGTCA GTGA TGACCGGC             TTTGTGTTATGTGCT 100 42
        metR  396907 ..  396929 -  -5.5  -2.72344   CTTTATGTGGAACTA          CGGTG-CCAC GCAG GTGGACGCCG           GAACACTCGCGATCA  49 116
JA116_RS01725  391519 ..  391529 -  -2.4  -3.71848   CCTCTTTATTAAGAA                 GACG GCA CGGC                 ATTATCCGCAGAAAT  51 406
JA116_RS01715  390394 ..  390411 - -12.7   -4.3898   AGTAGTGTGATAAAA             CCGGGCT GATA AGCCCGG              TTTTTTGTCCGGGCT 100 40
JA116_RS01700 NONE
JA116_RS01695  385621 ..  385634 -  -3.7  -5.37043   ATTTCATATAAAAAA               TCCGC GTTG GCGGG                ATTTTTTTATATCTG  80 51
        uvrA  381918 ..  381939 - -14.5  -5.97575   AACGGATAAAAAAAA           TACCGCAGC GGGC GCTGCGGTA            TTTTCAGAATCAGAA 100 45
JA116_RS01680  381253 ..  381285 -  -2.7  -3.57144   TGGCGGAGGTGGAAA     CCATGCGC--AGCCG GATCG CGGATATGCGCACGG     TGCTGGTGGATACCC  51 301
JA116_RS01660  376431 ..  376459 - -18.9  -4.89339   AATCAGTGATAAAAA        TGCCCGCCGTTTC TCA GAACCGGCGGGCA        TTTTACATTCTGCGG 100 44
JA116_RS01650 NONE
JA116_RS01645  372411 ..  372439 - -17.6  -3.29144   TCAGTCCCCGGACAA        TACTCCCCGGAA CAGTC TTCCGGGGAGTA        TTTTTTCGTTTTACC 100 36
JA116_RS01635 NONE
JA116_RS01630  369796 ..  369836 - -12.6  -3.00946   TGCCGGTATAAACCA GACCGGCATGCAGCGCCAC ATCA GCGGCGCTGCAT-CATGTC  AGTGTTCAGGCGAAC  93 24
         zur  368587 ..  368615 -    -6  -4.57569   GTATCCGCTTAAAAA       CCACAGTATGCCG GAGA CGGT-CACTGTGG        TTTTTGTTTTTCAGC  73 36
        plsB  364780 ..  364801 - -13.1  -5.45652   ACCGGCAATAAAAAA           GGAGATTGG CTGC CCAATCTCC            TTTTTTTTGTACTCA 100 54
        lysC  356826 ..  356838 -  -4.1  -4.21812   TTTCAGGCAAAATAA                CCTGT CAG ACAGA                TGATGTTACTTTGCG  61 433
JA116_RS01555  348981 ..  348998 - -12.7  -5.64274   GGACTGATAAAAAAA             GCCACCG CGGA CGGTGGC              AAAAGGCAGACTAAT 100 52
        purH NONE
        purD  338911 ..  338935 - -10.1  -2.56046   GTAAATGGGAACCTA          CGGAAGATTCA CTG TAAATCTCCCG          CAGGTTATTAACGCT  70 43
JA116_RS01475 NONE
JA116_RS01470 NONE
JA116_RS01465  331438 ..  331453 -  -3.2  -3.31501   ATGAATTTGTGATAA              CG-CGCC ATG GACGGCG              GATTGAGTGTGAGAT  47 40
JA116_RS01460  330509 ..  330522 -  -5.9  -3.21099   TTCTGCCATCATTAA               CAGGC TCCA GCCCG                GCGAGACAGCGCAGC  55 184
JA116_RS01450  328821 ..  328836 - -10.4  -3.96148   CGGCCGCAGCAGAAA              GCCTGC ATCA GCAGGC               GGGGCAACTTATGCA  81 148
        thiC NONE
        thiE NONE
JA116_RS01430 NONE
        thiS NONE
JA116_RS01420 NONE
        thiH  321330 ..  321353 -   -11  -5.24989   GGATAGACTAAAAAA          CAAGGCCGGT CTTC ACCGGCCTTT           TTACATCATCGTCCC 100 31
JA116_RS01400  317668 ..  317695 - -17.2  -2.70263   TTATATAACAACTCA        CGGCCTGATAAT CACG ATTATCAGGCCG         TTTTTTTACGGAATA 100 43
JA116_RS01305  295862 ..  295882 -  -7.6  -5.94713   ACCGGACAAAAAAAA           GCGCATTCC TGAC GGA-TGCGC            TTTTTTTATGTCCGT 100 47
JA116_RS01275  288970 ..  289001 - -12.3  -5.23292   GCAGAGAAAATAAAA      GCAG-CCGGCCGAC CTGAT ACCGGCCGGGCTGC      ATTCATTACGCTTCG 100 31
        vgrG NONE
JA116_RS01265 NONE
JA116_RS20190 NONE
JA116_RS20185 NONE
JA116_RS01255  283184 ..  283196 -  -4.1  -4.21439   TAACCGGAACAGAAA                CCAGT AAT ACTGA                ACATAATAACGTTGG  61 163
JA116_RS01250  282248 ..  282262 -  -7.1  -3.23216   CCGCACCATGATTAA               CAGCC TGGAC GGCTG               ATAAGGTAAAGAGAG  62 497
        murQ NONE
        murP  278724 ..  278742 - -14.6  -4.83593   AATAATCATGAAAAA             CAGACCGC ATT GCGGTCTG             TTTTTGTATCACTCC 100 48
JA116_RS01215 NONE
JA116_RS01210  276025 ..  276046 -  -6.5  -2.70932   CCTCCGGCTGAATCA           GCCG-CGGAA TTC TGCCGACGGC           ATGATGTTGAGTGTT  54 1
JA116_RS01205  275097 ..  275119 -   -15  -4.19177   ATTTTTGAACATAAA           CCGGGTAATA CAT TATTACCCGG           TTTTTTTATCGCTTG 100 31
         crp  273676 ..  273693 - -12.7  -5.62288   TTAAGAAAAGAAAAA             CAGGCGC AATT GCGCCTG              TTTTGGTGATAAAGG 100 50
        yihA  269344 ..  269373 -  -8.7  -4.58424   GATGATTACAGAAAA       GAACAGATGGTCA GTAA TAACCATCTGTTT        CGGGAGGGGATCACT 100 36
JA116_RS01165 NONE
JA116_RS01160  268546 ..  268580 - -12.9  -2.75074   TTTAGCTGAATATTA     GCTGCTCCGGTCAGA CAACT TCTGACCGGAGCATT     TTTTTTGTCCTGAAT  91 56
         def  267456 ..  267487 -  -9.4  -3.91897   GGCCGCACTCAGAAA      TCCGGGTCACATAC TGAT GTATGCTCCCCGGA       TTTCTTCCTTTGCCG  83 217
        mobB  260745 ..  260755 -  -2.6  -3.92659   TTTTTAAAACGTAAA                 TAAT AAG ATTA                 AATGGTTTTTTCAGG  54 121
JA116_RS01125  260295 ..  260315 - -10.4  -4.84761   ATAGTGGCATAAAAA            CGCCGGAA TATAT CTCCGGCG            CTTCATTATTTATTC 100 48
         idi NONE
JA116_RS01115  258878 ..  258889 -  -4.4  -5.13648   TAAACAGAAATAAAA                TCAC TATG GTGA                 ATACGCGATTAAGTA  78 427
JA116_RS01110  258026 ..  258041 - -10.4  -3.70033   TATGAAGATATAGAA              GGGCAG TTAT CTGCCC               TTAAAAAGATAACGA  82 57
JA116_RS01105 NONE
JA116_RS01100 NONE
JA116_RS01095  253076 ..  253086 -  -3.2  -3.52506   AATGAAAGTTAAATA                 CCGT AGC ACAG                 AATTCTCCTTCAGTT  49 39
JA116_RS01090  252233 ..  252248 -  -2.6  -3.96842   AGGGTAATACAAGAA              TTGATA TTAT CATCAA               TAAAACAGAACAGAC  54 190
JA116_RS01070  248701 ..  248726 -  -8.3  -2.78547   TCATCTGACTAATTA         TTTCGGCGGCT TAAG AGCAACCGAAA          TTTAACCGGGCCTGC  64 76
        yhjD  247022 ..  247059 -    -5  -3.03159   GCAACTGTCTGAATA  TCAGCC-G-GTAACGGTT CAGT ATCCGTTACACTGACTGA   TATTCATACCATATT  50 63
JA116_RS01055 NONE
JA116_RS01050  245712 ..  245730 - -11.8  -3.88114   AATATGAAATAAAGA             GGGTATCT GTA AGATACCC             TTTTTTTATGACTAT 100 37
JA116_RS00995  233589 ..  233613 - -12.9  -3.50572   AGTGATGTTACAGAA          TAGAGCCCGGT CTG ACCGGGCTTTA          TTTTTTACTGACCAG 100 30
JA116_RS00980 NONE
JA116_RS00975  228866 ..  228907 -    -8  -3.85698   TGTGTTGTGCAGAAA CCGGTGCGTGCCGGGCGGTG ACCG CACCATC-GGCA-GAACCGG TTTCAGGAGATGCGG  69 141
JA116_RS00965  226927 ..  226958 - -15.3  -3.52481   AAACAGGGCAGATAA      CCGGAACCGGAGCA GGTAT TG-TCCGGTTCCGG      GCGGGGCGGATGCGG 100 41
         gmk NONE
        rpoZ  225710 ..  225721 -  -2.2    -3.452   TTCAAACAGGTACAA                GGCA GACC TACC                 TTAACTTAACGACGT  47 31
        spoT NONE
        trmH NONE
        recG  220773 ..  220790 -  -8.4  -3.13164   CGCTTAAGCAGGCAA             GCCACC TTCCGG GGTGGC              TTTTTTCGTTATACG  67 34
JA116_RS00930  217850 ..  217878 -   -11  -2.69151   TTTCCGCACAGAGCA       GCACGCGTGACCG TTTC CGGTCACGCG-GT        TAAACAGATGATTAT  76 37
JA116_RS00925  215960 ..  215977 - -12.7  -5.38958   ACCGATAAAGAAAAA             CAGCGCC TTAC GGCGCTG              TTTCTGTATTAGCAG 100 47
        glnA  209600 ..  209621 - -11.5  -4.46212   CCCCGCAGGAGAAAA           GGACCCGCC CAAC GGCGGGTCA            AGTGCTTCACGGCAA 100 97
        glnL NONE
        glnG  206679 ..  206693 -  -2.8   -4.2243   AGAAAGACCTGAAAA               CCTG GTATGCA CAGG               TGGAAGAGCACGGCA  60 348
JA116_RS00870  202736 ..  202759 -  -8.8  -4.95155   GTCAGATGAGAAAAA          TCCGCG-CGGT GAT ACCGGCGCGGT          TTTTTTGTCTCTGTT 100 41
JA116_RS00845  197562 ..  197589 - -14.3  -3.57971   ATATTCACCCGTAAA        CAGTCAGGCTT TTTGAC AAGCCTGACTG         TCTGACAATGGTTAT 100 37
JA116_RS00840 NONE
JA116_RS00835 NONE
JA116_RS00830 NONE
JA116_RS00825  192508 ..  192528 - -12.6  -2.85056   ATCCGTAAGGCAAAT            GCCGGTCA TCACC TGACCGGC            GTTTTCAATTCAGCG  89 30
JA116_RS00775  182122 ..  182148 - -13.1  -3.61103   TAACGGGAGGGGAAA        GTACG-GGCAGC AGGC GCTGCCGCGTAC         AGGATACCGAGGGGA 100 42
        feoA  181556 ..  181580 - -10.7  -4.46976   ATCAATAAATACAAA          CCCCTCCTGCC GGC GGCAGAAGGAA          AGAAGTGAGTCAGCG 100 57
        feoB NONE
JA116_RS00760  178921 ..  178931 -  -2.6  -4.04157   TTAATAAAAAACGAA                 TAAT TTA ATTA                 AAAAGGATTCGTTTT  54 50
JA116_RS00755  177841 ..  177866 -    -9  -5.37345   GGTAATCAGAAAAAA         GCCGGTCAGT TTAATC ACCAACCGGC          TTTTGCCGAATTCTG 100 56
        gntX NONE
        nfuA  175617 ..  175639 - -11.2   -2.7263   AGCACCGCCGGAAAC           CCGCCCGGCA GTT CACCGGACGG           TGTATATCACGGCCG  76 83
        glpE NONE
        glpG  174327 ..  174364 -  -3.5  -3.19602   CCGGTCAGATCAATA   CCACCGCATAGTCA GGATCGTGCTG TGAC-AGGCGGTGG   TGGTGTCATATTGTC  48 49
JA116_RS00725  173511 ..  173534 -   -16  -3.38603   AAAGAGGGTGAAATA          CCGCGCCACC GGGC GGTGACGCGG           GCGGAGAAAATCAGC 100 36
        glpD  171806 ..  171830 - -15.8    -5.626   GAGGTGATAAAAAAA          CAGACCGGCT TTGTG AGCCGGTCTG          CGTTGTTATCTTACT 100 36
JA116_RS00705  168229 ..  168244 - -10.4  -5.13473   AGCAGAGGTAAAAAA              TGCCGC ATGT GCGGCA               TTTTTTTGCTCAGTA 100 35
JA116_RS00695  164579 ..  164602 - -16.8  -5.60993   TTTCTGATAAAAAAA          GCCCGGTAAC ATCA GTTACCGGGC           TTTGCATTTGCTGTG 100 53
        proP  160287 ..  160308 - -11.5  -5.74288   ATAAACAATAAAAAA           GCCCGCGTC CGGA GAGGCGGGC            CTGAGCAGGACATCA 100 38
        phrB  158772 ..  158807 -    -9  -3.07233   TTATAATCTGGAACA    TCTGCTGACCTACAGCA CTG TGCGGC-GGTCAGCAGG    TAAAGCAGATTAACC  69 35
        megL  153883 ..  153931 -  -3.2  -4.77986   TTAAATACTTAAAAA GCACGCCGGAGAGAATTCAGAGTG GCT CTCAATGAATTTT-TCCG-CGTGC TTCGTGTACTCACCC  68 105
JA116_RS00655  152286 ..  152306 - -15.5  -5.58454   TTCAGACGAAAAAAA            GCGGGAGAT GAT ATCTCCCGC            AATATGCTAACCAAT 100 204
JA116_RS00580  134475 ..  134509 - -13.8  -4.75289   GACTATAATATAAAA     TAAACCACCCGATATT GAT AATACAGGGTGGTTTA     TATGAGAGGTGCAGC 100 46
JA116_RS00575  133570 ..  133588 -  -8.8  -5.50499   TTACAGTCAAAAAAA             CCGGGC TGATTTT GCCCGG             TTTCTGGTGTCTGAA 100 64
JA116_RS00570 NONE
JA116_RS00565 NONE
JA116_RS00560  129599 ..  129632 - -10.6  -3.91716   TCAGGCGGGAAATAA     CAGATACC-GTAATA CGATT TATTACCGGTATCTG     TTTTGTATGCGGGGA  89 46
JA116_RS00555 NONE
JA116_RS00550  127596 ..  127626 -    -9  -2.97747   CTGCCATAGCAGAGA       GGGATGTCCCTGCC AGA AACAGAGACATCAC       AGATAATGATATAAA  68 83
JA116_RS00545 NONE
JA116_RS00540  124073 ..  124106 - -13.1  -3.07043   GGTATCAGCTGAATA     CCGGCCGCCGCCCGGA TAA TCCGGACGGC-GCTGA     TATCAGTCAAACTGT  95 28
        sodA  118352 ..  118376 - -15.1  -3.94877   AGCGGGGAAGAAGAA          TATGTGCGGAC AAT GCCCGCACATA          TTTCAGAACTTATTT 100 35
        yiiM NONE
JA116_RS00470  107673 ..  107698 - -16.1  -4.82667   GCATCAGAGTAAAAA         GCGCCTCCGGT CTGC ACCGGGGGCGC          TTTTTTTACGGCGGA 100 43
JA116_RS00445  101792 ..  101813 -  -4.3  -5.59564   ATAAACTGAAAAAAA           GCGCCCC GGAATGAA GCGGCGC            TTTTTTTTATATCCG  90 41
        mrcA   89501 ..   89518 - -12.7  -6.11644   CGATTGAAAAAAAAA             GGCTGCC CTCA GGCAGCC              CTTGTCTGTTTATCA 100 46
JA116_RS00375   86388 ..   86408 - -16.9  -2.98942   ACTCCGTGACAGACA            GTGCAGCCG TTA CGGCTGCAC            CTCAGAAGAAGGGTA 100 14
        hslR NONE
        hslO   84984 ..   85011 - -20.6  -5.63012   AAAAATAAACAAAAA        GGCCGCGCCCGGG AAA CCCGG-CGCGGCC        TGGTGTTGCGTCAGC 100 50
        pckA   83148 ..   83182 - -12.9  -4.77165   GCCGGCACAATAAAA    CAGAAAGCCCCGGATC ATCT GACCCGGGGCTA-CTG     TGTTGCTCACACTAC 100 57
        pitA   78745 ..   78764 - -12.2  -5.90981   GGATACGAAAAAAAA            GCCTGACA CATG TGTCAGGC             TTTTCAGTTTCAGAG 100 56
        uspA   77552 ..   77569 - -11.3  -5.81412   TTCAGCCAAAAAAAA             TGCCTGC ATAA GCAGGCA              TTTCAGATGAATAAT 100 55
        gdhA   75787 ..   75804 -  -2.6  -4.21314   AATAATATCTGAAAA             GGGGAC AGGGCA GTTCCC              GTTTCGCGAAGGGGT  57 111
JA116_RS00310 NONE
JA116_RS00305   71043 ..   71061 -  -3.8  -3.20991   CCCAACGTAATTCAA             GCTGCA GGCTGAG CGCAGC             CAACGAACCTGCGGT  48 384
JA116_RS00255   59158 ..   59170 -  -4.9  -3.99324   GGTTATCACTATAAA                GATAA TCA TTATC                TTTACTTGTAAAAAT  61 43
JA116_RS00250   58358 ..   58385 - -11.4  -2.92613   TTTTATCTGAAATCA        TAAGACACCGGA CTCA CCCAGTGTCTTA         TATTCTTCACTATTT  83 35
JA116_RS00235   54345 ..   54380 -  -6.8  -3.08679   GTCTGTCAGCGAATA    TCCGC-ATGTGATCCGC TGG GCGGAACAGATTGCGGC    ACGTCCGGCTGTTCA  56 178
JA116_RS00205 NONE
        mdtD   45537 ..   45549 -  -3.4  -3.86897   GCTATCTGGCAGAAA                GGAT TACGT ATCC                CGCAGGATATTGCGG  55 231
JA116_RS00165   38967 ..   38985 - -10.3  -5.96219   TAGTGATAAAAAAAA             TTGCCGG GGATA CCGGCAA             TGCTGTTAATCAGTA 100 51
        ravA NONE
        viaA   35714 ..   35732 - -10.2  -2.72511   GGCAGCCGGTGAAAT             GCCGCAGA CTA TCGGCGGC             GGGATCGGCCAGTCA  67 169
        asnC NONE
        mioC   33427 ..   33446 -  -5.1  -4.13872   AGGTAATTATATAAA            GATCTTT TTATTT AAAGATC             TCTTTATTAGATCTT  65 275
        mnmG NONE
        rsmG   30735 ..   30767 -    -7  -4.89063   CTACGGAAAAACAAA     GGGACGGTG-CAG AAAATGCG CTGACTCCGTCCC      CTTAAAAATATTTCT  82 62
        atpI   29821 ..   29836 -    -4  -3.04398   CTTTGTTGTTAAAAC              CGCTAA CCGC TTAGCA               CGGCCGGTGCGATAA  47 12
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA   26017 ..   26041 -   -10  -2.93723   TCCTCATGAACCAGA          CGGCCTGTAC TGTTC ACACAGGCCG          TTTAGTATTACCAGG  73 33
        atpG   25125 ..   25142 -  -3.4  -3.08314   CGTAATTCGTAAAAC             CCG-GGT GTTAA ACCGCGG             CAGCACCGGACACAA  46 15
        atpD   23222 ..   23245 - -13.2  -5.15969   TCGCAACGCAAAAAA          GCCAGTCAGC AGAT ACTGACTGGC           TTTTATATTTTAACT 100 494
        glmU NONE
        glmS   19770 ..   19802 - -19.9  -5.75342   CCCGGGTAAAAAAAA      GCCCGGAGTGCATCA CAA CGATGCGCTCCGGGC      CTGAATCTTTAATTC 100 64
JA116_RS00070   18113 ..   18129 -  -2.1  -4.87665   CCTGATTGAGAAAAA              TGCGGCC AAT GTCCGTA              CAGGTGTGACAATCG  68 288
         asd   12940 ..   12971 -  -2.3  -6.28967   CACAAACAAAAAAAA      TGACTCATGTG GAAAAATCAG CACATGAGCCC       ATCACTTTGTATCTA  93 56
JA116_RS00045 NONE
JA116_RS00040 NONE
        glsA    8188 ..    8203 - -11.8  -3.91144   TTTATATCTGACAAA              GCCCGG AAAT CCGGGC               TTTGTCGTTATCCGT 100 45
JA116_RS00025    6148 ..    6163 - -11.8  -3.91144   CTGAGACCTGATAAA              GCCCGG ATTT CCGGGC               TTTATTTTTTTCCGG 100 58
