CP478_RS00005	SM00382	ATPases associated with a variety of cellular activities
CP478_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CP478_RS00010	SM00480	DNA polymerase III beta subunit
CP478_RS00025	SM00387	Histidine kinase-like ATPases
CP478_RS00025	SM00433	TopoisomeraseII
CP478_RS00030	SM00434	DNA Topoisomerase IV
CP478_RS00085	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS00085	SM00740	CP478_RS00085
CP478_RS00090	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS00105	SM00331	Sigma factor PP2C-like phosphatases
CP478_RS00105	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CP478_RS00110	SM00240	Forkhead associated domain
CP478_RS00115	SM00240	Forkhead associated domain
CP478_RS00135	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS00235	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS00240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS00315	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
CP478_RS00315	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CP478_RS00315	SM00382	ATPases associated with a variety of cellular activities
CP478_RS00325	SM00506	Appr-1"-p processing enzyme
CP478_RS00405	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS00405	SM00382	ATPases associated with a variety of cellular activities
CP478_RS00455	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS00560	SM00823	Phosphopantetheine attachment site
CP478_RS00575	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS00585	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CP478_RS00660	SM00838	Elongation factor G C-terminus
CP478_RS00660	SM00889	Elongation factor G, domain IV
CP478_RS00685	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CP478_RS00690	SM00642	Alpha-amylase domain
CP478_RS00800	SM00822	CP478_RS00800
CP478_RS00805	SM00829	Enoylreductase
CP478_RS00850	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CP478_RS00850	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CP478_RS00890	SM00829	Enoylreductase
CP478_RS01015	SM01217	CP478_RS01015
CP478_RS01060	SM00382	ATPases associated with a variety of cellular activities
CP478_RS01065	SM00421	helix_turn_helix, Lux Regulon
CP478_RS01075	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CP478_RS01155	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS01310	SM00822	CP478_RS01310
CP478_RS01325	SM00903	Flavin reductase like domain
CP478_RS01405	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS01420	SM00797	Allophanate hydrolase subunit 2
CP478_RS01425	SM00796	Allophanate hydrolase subunit 1
CP478_RS01525	SM00382	ATPases associated with a variety of cellular activities
CP478_RS01535	SM00382	ATPases associated with a variety of cellular activities
CP478_RS01630	SM00822	CP478_RS01630
CP478_RS01650	SM00014	Acid phosphatase homologues
CP478_RS01725	SM00984	UDP binding domain
CP478_RS01735	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS01735	SM00450	Rhodanese Homology Domain
CP478_RS01795	SM00507	HNH nucleases
CP478_RS01815	SM00421	helix_turn_helix, Lux Regulon
CP478_RS01880	SM00271	DnaJ molecular chaperone homology domain
CP478_RS01885	SM00422	helix_turn_helix, mercury resistance
CP478_RS01910	SM00788	Adenylosuccinate synthetase
CP478_RS01935	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS01935	SM00924	MgtE intracellular N domain
CP478_RS01965	SM00327	von Willebrand factor (vWF) type A domain
CP478_RS01975	SM00382	ATPases associated with a variety of cellular activities
CP478_RS01990	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CP478_RS02000	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CP478_RS02045	SM00382	ATPases associated with a variety of cellular activities
CP478_RS02045	SM01086	C-terminal, D2-small domain, of ClpB protein
CP478_RS02055	SM00421	helix_turn_helix, Lux Regulon
CP478_RS02075	SM00450	Rhodanese Homology Domain
CP478_RS02090	SM00507	HNH nucleases
CP478_RS02160	SM00823	Phosphopantetheine attachment site
CP478_RS02160	SM00824	Thioesterase
CP478_RS02160	SM00825	Beta-ketoacyl synthase
CP478_RS02160	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS02165	SM00849	Metallo-beta-lactamase superfamily
CP478_RS02185	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS02190	SM00062	Bacterial periplasmic substrate-binding proteins
CP478_RS02310	SM00464	Found in ATP-dependent protease La (LON)
CP478_RS02315	SM00382	ATPases associated with a variety of cellular activities
CP478_RS02315	SM01073	Cell division protein 48 (CDC48) N-terminal domain
CP478_RS02330	SM00852	Probable molybdopterin binding domain
CP478_RS02480	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS02530	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS02550	SM01133	CP478_RS02550
CP478_RS02605	SM00855	Phosphoglycerate mutase family
CP478_RS02610	SM00387	Histidine kinase-like ATPases
CP478_RS02610	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS02620	SM00448	cheY-homologous receiver domain
CP478_RS02620	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS02640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS02640	SM00895	CP478_RS02640
CP478_RS02665	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CP478_RS02680	SM01155	CP478_RS02680
CP478_RS02690	SM00563	Phosphate acyltransferases
CP478_RS02740	SM01004	Delta-aminolevulinic acid dehydratase
CP478_RS02755	SM00507	HNH nucleases
CP478_RS02810	SM00855	Phosphoglycerate mutase family
CP478_RS02960	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CP478_RS03075	SM00854	Bacterial capsule synthesis protein PGA_cap
CP478_RS03085	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS03140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS03140	SM00895	CP478_RS03140
CP478_RS03205	SM00966	SpoVT / AbrB like domain 
CP478_RS03210	SM00387	Histidine kinase-like ATPases
CP478_RS03215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS03220	SM00448	cheY-homologous receiver domain
CP478_RS03220	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS03235	SM00857	Resolvase, N terminal domain
CP478_RS03375	SM00897	FIST N domain
CP478_RS03375	SM01204	CP478_RS03375
CP478_RS03405	SM00849	Metallo-beta-lactamase superfamily
CP478_RS03455	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CP478_RS03460	SM00649	Ribosomal protein L11/L12
CP478_RS03500	SM00872	Alpha mannosidase, middle domain
CP478_RS03535	SM00382	ATPases associated with a variety of cellular activities
CP478_RS03605	SM00663	RNA polymerase I subunit A N-terminus
CP478_RS03625	SM00518	AP endonuclease family 2
CP478_RS03695	SM00838	Elongation factor G C-terminus
CP478_RS03695	SM00889	Elongation factor G, domain IV
CP478_RS03710	SM00822	CP478_RS03710
CP478_RS03750	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS03800	SM01403	CP478_RS03800
CP478_RS03820	SM01382	CP478_RS03820
CP478_RS03820	SM01383	CP478_RS03820
CP478_RS03835	SM00322	K homology RNA-binding domain
CP478_RS03870	SM01374	CP478_RS03870
CP478_RS03875	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CP478_RS03935	SM01007	Class II Aldolase and Adducin N-terminal domain
CP478_RS03990	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS04100	SM00855	Phosphoglycerate mutase family
CP478_RS04125	SM00448	cheY-homologous receiver domain
CP478_RS04125	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS04130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS04130	SM00387	Histidine kinase-like ATPases
CP478_RS04130	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS04145	SM00829	Enoylreductase
CP478_RS04200	SM01209	CP478_RS04200
CP478_RS04200	SM01210	CP478_RS04200
CP478_RS04225	SM00998	Adenylosuccinate lyase C-terminus
CP478_RS04270	SM00849	Metallo-beta-lactamase superfamily
CP478_RS04285	SM01211	CP478_RS04285
CP478_RS04295	SM00460	Transglutaminase/protease-like homologues
CP478_RS04305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS04305	SM00866	CP478_RS04305
CP478_RS04425	SM00450	Rhodanese Homology Domain
CP478_RS04440	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS04450	SM00382	ATPases associated with a variety of cellular activities
CP478_RS04485	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS04610	SM00421	helix_turn_helix, Lux Regulon
CP478_RS04610	SM00448	cheY-homologous receiver domain
CP478_RS04615	SM00387	Histidine kinase-like ATPases
CP478_RS04700	SM00487	DEAD-like helicases superfamily
CP478_RS04700	SM00490	helicase superfamily c-terminal domain
CP478_RS04720	SM00852	Probable molybdopterin binding domain
CP478_RS04740	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS04750	SM00357	Cold shock protein domain
CP478_RS04770	SM00897	FIST N domain
CP478_RS04770	SM01204	CP478_RS04770
CP478_RS04800	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS04855	SM00421	helix_turn_helix, Lux Regulon
CP478_RS04860	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS04920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS04920	SM00387	Histidine kinase-like ATPases
CP478_RS04920	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS04925	SM00448	cheY-homologous receiver domain
CP478_RS04925	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS05030	SM00857	Resolvase, N terminal domain
CP478_RS05080	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS05090	SM00382	ATPases associated with a variety of cellular activities
CP478_RS05110	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CP478_RS05120	SM00849	Metallo-beta-lactamase superfamily
CP478_RS05145	SM01232	CP478_RS05145
CP478_RS05175	SM00830	Chorismate mutase type II
CP478_RS05195	SM00881	CoA binding domain
CP478_RS05225	SM00798	AICARFT/IMPCHase bienzyme
CP478_RS05225	SM00851	MGS-like domain
CP478_RS05235	SM00327	von Willebrand factor (vWF) type A domain
CP478_RS05310	SM00878	Biotin carboxylase C-terminal domain
CP478_RS05360	SM00448	cheY-homologous receiver domain
CP478_RS05360	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS05365	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS05365	SM00387	Histidine kinase-like ATPases
CP478_RS05365	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS05370	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CP478_RS05375	SM00852	Probable molybdopterin binding domain
CP478_RS05385	SM00382	ATPases associated with a variety of cellular activities
CP478_RS05405	SM00858	CP478_RS05405
CP478_RS05410	SM00834	Putative regulatory protein
CP478_RS05425	SM00852	Probable molybdopterin binding domain
CP478_RS05465	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS05520	SM01208	CP478_RS05520
CP478_RS05525	SM00650	Ribosomal RNA adenine dimethylases
CP478_RS05565	SM01400	CP478_RS05565
CP478_RS05585	SM00487	DEAD-like helicases superfamily
CP478_RS05585	SM00490	helicase superfamily c-terminal domain
CP478_RS05585	SM00982	CP478_RS05585
CP478_RS05585	SM01058	CarD-like/TRCF domain
CP478_RS05600	SM01192	CP478_RS05600
CP478_RS05600	SM01193	CP478_RS05600
CP478_RS05625	SM00448	cheY-homologous receiver domain
CP478_RS05625	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS05630	SM00387	Histidine kinase-like ATPases
CP478_RS05630	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS05660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS05660	SM00387	Histidine kinase-like ATPases
CP478_RS05660	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS05665	SM00448	cheY-homologous receiver domain
CP478_RS05665	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS05750	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS05755	SM00822	CP478_RS05755
CP478_RS05850	SM00450	Rhodanese Homology Domain
CP478_RS05905	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS06015	SM00670	Large family of predicted nucleotide-binding domains
CP478_RS06145	SM01350	CP478_RS06145
CP478_RS06175	SM00507	HNH nucleases
CP478_RS06180	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS06305	SM00507	HNH nucleases
CP478_RS06320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS06380	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CP478_RS06400	SM00838	Elongation factor G C-terminus
CP478_RS06440	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS06470	SM00487	DEAD-like helicases superfamily
CP478_RS06475	SM00822	CP478_RS06475
CP478_RS06475	SM00823	Phosphopantetheine attachment site
CP478_RS06475	SM00825	Beta-ketoacyl synthase
CP478_RS06475	SM00826	CP478_RS06475
CP478_RS06475	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS06475	SM00829	Enoylreductase
CP478_RS06600	SM00382	ATPases associated with a variety of cellular activities
CP478_RS06655	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CP478_RS06670	SM00382	ATPases associated with a variety of cellular activities
CP478_RS06700	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CP478_RS06750	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS06750	SM00924	MgtE intracellular N domain
CP478_RS06780	SM00382	ATPases associated with a variety of cellular activities
CP478_RS06820	SM00822	CP478_RS06820
CP478_RS06835	SM00861	Transketolase, pyrimidine binding domain
CP478_RS06860	SM00487	DEAD-like helicases superfamily
CP478_RS06860	SM00490	helicase superfamily c-terminal domain
CP478_RS06890	SM00986	Uracil DNA glycosylase superfamily
CP478_RS06890	SM00987	UreE urease accessory protein, C-terminal domain 
CP478_RS06915	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS06925	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS06930	SM00240	Forkhead associated domain
CP478_RS06930	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS06930	SM01043	Bacterial transcriptional activator domain
CP478_RS06960	SM00382	ATPases associated with a variety of cellular activities
CP478_RS06965	SM00382	ATPases associated with a variety of cellular activities
CP478_RS06980	SM00855	Phosphoglycerate mutase family
CP478_RS07005	SM00382	ATPases associated with a variety of cellular activities
CP478_RS07020	SM00947	Carbonic anhydrase
CP478_RS07040	SM00257	Lysin motif
CP478_RS07070	SM00836	DALR anticodon binding domain
CP478_RS07070	SM01016	Arginyl tRNA synthetase N terminal dom
CP478_RS07105	SM00357	Cold shock protein domain
CP478_RS07105	SM00382	ATPases associated with a variety of cellular activities
CP478_RS07105	SM00959	Rho termination factor, N-terminal domain
CP478_RS07120	SM00937	CP478_RS07120
CP478_RS07175	SM00382	ATPases associated with a variety of cellular activities
CP478_RS07225	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS07225	SM00478	endonuclease III
CP478_RS07225	SM01009	AlkA N-terminal domain
CP478_RS07230	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS07230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS07235	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS07235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS07240	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS07240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS07275	SM00642	Alpha-amylase domain
CP478_RS07280	SM00642	Alpha-amylase domain
CP478_RS07290	SM00487	DEAD-like helicases superfamily
CP478_RS07290	SM00491	CP478_RS07290
CP478_RS07315	SM00232	JAB/MPN domain
CP478_RS07380	SM01006	Siderophore biosynthesis protein domain
CP478_RS07390	SM00382	ATPases associated with a variety of cellular activities
CP478_RS07395	SM00382	ATPases associated with a variety of cellular activities
CP478_RS07405	SM00822	CP478_RS07405
CP478_RS07430	SM00052	Putative diguanylate phosphodiesterase
CP478_RS07430	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CP478_RS07430	SM00267	diguanylate cyclase
CP478_RS07445	SM00052	Putative diguanylate phosphodiesterase
CP478_RS07485	SM00331	Sigma factor PP2C-like phosphatases
CP478_RS07495	SM00954	Region found in RelA / SpoT proteins
CP478_RS07555	SM00507	HNH nucleases
CP478_RS07580	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CP478_RS07585	SM00851	MGS-like domain
CP478_RS07585	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CP478_RS07590	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CP478_RS07615	SM00072	Guanylate kinase homologues.
CP478_RS07620	SM01409	CP478_RS07620
CP478_RS07645	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS07690	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS07740	SM01119	CP478_RS07740
CP478_RS07765	SM00458	Ricin-type beta-trefoil
CP478_RS07770	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CP478_RS07770	SM00465	GIY-YIG type nucleases (URI domain)
CP478_RS07810	SM00563	Phosphate acyltransferases
CP478_RS07855	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CP478_RS07945	SM00861	Transketolase, pyrimidine binding domain
CP478_RS07975	SM00829	Enoylreductase
CP478_RS07995	SM00382	ATPases associated with a variety of cellular activities
CP478_RS08010	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
CP478_RS08010	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CP478_RS08020	SM00382	ATPases associated with a variety of cellular activities
CP478_RS08070	SM00382	ATPases associated with a variety of cellular activities
CP478_RS08115	SM00327	von Willebrand factor (vWF) type A domain
CP478_RS08125	SM00822	CP478_RS08125
CP478_RS08150	SM00244	prohibitin homologues
CP478_RS08375	SM00822	CP478_RS08375
CP478_RS08375	SM00823	Phosphopantetheine attachment site
CP478_RS08375	SM00825	Beta-ketoacyl synthase
CP478_RS08375	SM00826	CP478_RS08375
CP478_RS08375	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS08375	SM00829	Enoylreductase
CP478_RS08430	SM00870	CP478_RS08430
CP478_RS08440	SM00363	S4 RNA-binding domain
CP478_RS08455	SM00822	CP478_RS08455
CP478_RS08475	SM00481	DNA polymerase alpha chain like domain
CP478_RS08495	SM00563	Phosphate acyltransferases
CP478_RS08555	SM00642	Alpha-amylase domain
CP478_RS08560	SM00642	Alpha-amylase domain
CP478_RS08565	SM00642	Alpha-amylase domain
CP478_RS08660	SM00885	D5 N terminal like
CP478_RS08680	SM00857	Resolvase, N terminal domain
CP478_RS08700	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS08700	SM00876	Biotin and Thiamin Synthesis associated domain
CP478_RS08860	SM00382	ATPases associated with a variety of cellular activities
CP478_RS08865	SM00382	ATPases associated with a variety of cellular activities
CP478_RS08885	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS08895	SM00448	cheY-homologous receiver domain
CP478_RS08895	SM01012	CP478_RS08895
CP478_RS08910	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CP478_RS08910	SM00474	3'-5' exonuclease
CP478_RS08910	SM00475	5'-3' exonuclease
CP478_RS08910	SM00482	DNA polymerase A domain
CP478_RS08915	SM00316	Ribosomal protein S1-like RNA-binding domain
CP478_RS08935	SM00487	DEAD-like helicases superfamily
CP478_RS08935	SM00490	helicase superfamily c-terminal domain
CP478_RS08960	SM00849	Metallo-beta-lactamase superfamily
CP478_RS09000	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CP478_RS09015	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS09030	SM00873	B3/4 domain
CP478_RS09030	SM00874	tRNA synthetase B5 domain
CP478_RS09030	SM00896	Ferredoxin-fold anticodon binding domain
CP478_RS09040	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CP478_RS09085	SM00822	CP478_RS09085
CP478_RS09085	SM00823	Phosphopantetheine attachment site
CP478_RS09085	SM00825	Beta-ketoacyl synthase
CP478_RS09085	SM00826	CP478_RS09085
CP478_RS09085	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS09085	SM00829	Enoylreductase
CP478_RS09085	SM01294	CP478_RS09085
CP478_RS09090	SM00825	Beta-ketoacyl synthase
CP478_RS09090	SM00826	CP478_RS09090
CP478_RS09090	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS09090	SM00829	Enoylreductase
CP478_RS09095	SM00822	CP478_RS09095
CP478_RS09095	SM00823	Phosphopantetheine attachment site
CP478_RS09095	SM01294	CP478_RS09095
CP478_RS09100	SM00823	Phosphopantetheine attachment site
CP478_RS09100	SM00825	Beta-ketoacyl synthase
CP478_RS09100	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS09115	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09140	SM00460	Transglutaminase/protease-like homologues
CP478_RS09145	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS09145	SM00450	Rhodanese Homology Domain
CP478_RS09150	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS09150	SM00419	helix_turn_helix, cAMP Regulatory protein
CP478_RS09210	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09220	SM00363	S4 RNA-binding domain
CP478_RS09245	SM00363	S4 RNA-binding domain
CP478_RS09285	SM00507	HNH nucleases
CP478_RS09335	SM00363	S4 RNA-binding domain
CP478_RS09345	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09350	SM00822	CP478_RS09350
CP478_RS09375	SM00346	helix_turn_helix isocitrate lyase regulation
CP478_RS09375	SM00419	helix_turn_helix, cAMP Regulatory protein
CP478_RS09475	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CP478_RS09510	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS09525	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS09530	SM00240	Forkhead associated domain
CP478_RS09530	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09580	SM01110	CP478_RS09580
CP478_RS09610	SM00507	HNH nucleases
CP478_RS09660	SM01012	CP478_RS09660
CP478_RS09665	SM00346	helix_turn_helix isocitrate lyase regulation
CP478_RS09715	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09790	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09905	SM00382	ATPases associated with a variety of cellular activities
CP478_RS09915	SM00957	SecA DEAD-like domain
CP478_RS09915	SM00958	SecA preprotein cross-linking domain
CP478_RS09945	SM00240	Forkhead associated domain
CP478_RS09950	SM00422	helix_turn_helix, mercury resistance
CP478_RS09960	SM00422	helix_turn_helix, mercury resistance
CP478_RS09980	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CP478_RS09985	SM00327	von Willebrand factor (vWF) type A domain
CP478_RS10015	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS10020	SM01091	Transporter associated domain
CP478_RS10025	SM01240	CP478_RS10025
CP478_RS10030	SM01350	CP478_RS10030
CP478_RS10105	SM00382	ATPases associated with a variety of cellular activities
CP478_RS10215	SM01230	CP478_RS10215
CP478_RS10250	SM00830	Chorismate mutase type II
CP478_RS10290	SM00867	YceI-like domain 
CP478_RS10340	SM00506	Appr-1"-p processing enzyme
CP478_RS10345	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS10350	SM00852	Probable molybdopterin binding domain
CP478_RS10405	SM00829	Enoylreductase
CP478_RS10410	SM00849	Metallo-beta-lactamase superfamily
CP478_RS10450	SM00563	Phosphate acyltransferases
CP478_RS10505	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS10550	SM00903	Flavin reductase like domain
CP478_RS10580	SM00507	HNH nucleases
CP478_RS10640	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS10800	SM01110	CP478_RS10800
CP478_RS10805	SM01152	CP478_RS10805
CP478_RS10820	SM00637	CP478_RS10820
CP478_RS10825	SM00650	Ribosomal RNA adenine dimethylases
CP478_RS10835	SM00953	CP478_RS10835
CP478_RS10875	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS10890	SM00831	Cation transporter/ATPase, N-terminus
CP478_RS10995	SM00507	HNH nucleases
CP478_RS11010	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS11030	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS11050	SM00487	DEAD-like helicases superfamily
CP478_RS11065	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CP478_RS11065	SM00387	Histidine kinase-like ATPases
CP478_RS11100	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS11120	SM00382	ATPases associated with a variety of cellular activities
CP478_RS11170	SM00822	CP478_RS11170
CP478_RS11170	SM00823	Phosphopantetheine attachment site
CP478_RS11170	SM00825	Beta-ketoacyl synthase
CP478_RS11170	SM00826	CP478_RS11170
CP478_RS11170	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS11170	SM00829	Enoylreductase
CP478_RS11170	SM01294	CP478_RS11170
CP478_RS11375	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS11385	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CP478_RS11385	SM00475	5'-3' exonuclease
CP478_RS11395	SM00487	DEAD-like helicases superfamily
CP478_RS11395	SM00490	helicase superfamily c-terminal domain
CP478_RS11395	SM01142	CP478_RS11395
CP478_RS11430	SM00507	HNH nucleases
CP478_RS11435	SM00487	DEAD-like helicases superfamily
CP478_RS11435	SM00490	helicase superfamily c-terminal domain
CP478_RS11510	SM00382	ATPases associated with a variety of cellular activities
CP478_RS11555	SM01018	B12 binding domain
CP478_RS11580	SM00822	CP478_RS11580
CP478_RS11610	SM00855	Phosphoglycerate mutase family
CP478_RS11700	SM00864	Tubulin/FtsZ family, GTPase domain
CP478_RS11700	SM00865	Tubulin/FtsZ family, C-terminal domain
CP478_RS11830	SM00220	Serine/Threonine protein kinases, catalytic domain
CP478_RS11865	SM00563	Phosphate acyltransferases
CP478_RS11915	SM00465	GIY-YIG type nucleases (URI domain)
CP478_RS11915	SM00479	CP478_RS11915
CP478_RS12020	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS12030	SM00822	CP478_RS12030
CP478_RS12050	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS12065	SM01230	CP478_RS12065
CP478_RS12075	SM01230	CP478_RS12075
CP478_RS12100	SM00880	CP478_RS12100
CP478_RS12100	SM01118	CP478_RS12100
CP478_RS12115	SM00855	Phosphoglycerate mutase family
CP478_RS12150	SM00226	Low molecular weight phosphatase family
CP478_RS12205	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS12215	SM00825	Beta-ketoacyl synthase
CP478_RS12220	SM00825	Beta-ketoacyl synthase
CP478_RS12250	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CP478_RS12295	SM00829	Enoylreductase
CP478_RS12300	SM00849	Metallo-beta-lactamase superfamily
CP478_RS12445	SM00450	Rhodanese Homology Domain
CP478_RS12490	SM00387	Histidine kinase-like ATPases
CP478_RS12495	SM00849	Metallo-beta-lactamase superfamily
CP478_RS12500	SM01110	CP478_RS12500
CP478_RS12670	SM00344	helix_turn_helix ASNC type
CP478_RS12680	SM00382	ATPases associated with a variety of cellular activities
CP478_RS12685	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS12720	SM00919	Malic enzyme, NAD binding domain
CP478_RS12720	SM01274	CP478_RS12720
CP478_RS12785	SM00400	zinc finger
CP478_RS12785	SM00493	CP478_RS12785
CP478_RS12785	SM00766	DNA primase DnaG DnaB-binding
CP478_RS12790	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CP478_RS12865	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS12905	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS12905	SM01091	Transporter associated domain
CP478_RS12915	SM00322	K homology RNA-binding domain
CP478_RS12940	SM00271	DnaJ molecular chaperone homology domain
CP478_RS12960	SM00923	MbtH-like protein
CP478_RS12970	SM00823	Phosphopantetheine attachment site
CP478_RS12975	SM00823	Phosphopantetheine attachment site
CP478_RS12975	SM01294	CP478_RS12975
CP478_RS12980	SM00822	CP478_RS12980
CP478_RS12980	SM00823	Phosphopantetheine attachment site
CP478_RS12980	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS12985	SM00825	Beta-ketoacyl synthase
CP478_RS12990	SM00823	Phosphopantetheine attachment site
CP478_RS13020	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS13080	SM00382	ATPases associated with a variety of cellular activities
CP478_RS13120	SM00838	Elongation factor G C-terminus
CP478_RS13130	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS13135	SM00849	Metallo-beta-lactamase superfamily
CP478_RS13155	SM00460	Transglutaminase/protease-like homologues
CP478_RS13185	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CP478_RS13205	SM00855	Phosphoglycerate mutase family
CP478_RS13245	SM00382	ATPases associated with a variety of cellular activities
CP478_RS13295	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS13300	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS13300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS13330	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CP478_RS13360	SM00316	Ribosomal protein S1-like RNA-binding domain
CP478_RS13365	SM00562	CP478_RS13365
CP478_RS13425	SM00382	ATPases associated with a variety of cellular activities
CP478_RS13425	SM00994	ClpX C4-type zinc finger
CP478_RS13425	SM01086	C-terminal, D2-small domain, of ClpB protein
CP478_RS13470	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CP478_RS13470	SM01232	CP478_RS13470
CP478_RS13500	SM00507	HNH nucleases
CP478_RS13510	SM00642	Alpha-amylase domain
CP478_RS13540	SM00382	ATPases associated with a variety of cellular activities
CP478_RS13570	SM00563	Phosphate acyltransferases
CP478_RS13575	SM00563	Phosphate acyltransferases
CP478_RS13605	SM00421	helix_turn_helix, Lux Regulon
CP478_RS13650	SM00861	Transketolase, pyrimidine binding domain
CP478_RS13675	SM00878	Biotin carboxylase C-terminal domain
CP478_RS13685	SM00882	Coenzyme A transferase
CP478_RS13690	SM00882	Coenzyme A transferase
CP478_RS13725	SM00479	CP478_RS13725
CP478_RS13770	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS13825	SM00825	Beta-ketoacyl synthase
CP478_RS13825	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS13860	SM00891	ERCC4 domain
CP478_RS13890	SM00841	Elongation factor P, C-terminal
CP478_RS13890	SM01185	CP478_RS13890
CP478_RS14005	SM00732	Likely ribonuclease with RNase H fold.
CP478_RS14010	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CP478_RS14030	SM00382	ATPases associated with a variety of cellular activities
CP478_RS14060	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS14060	SM00382	ATPases associated with a variety of cellular activities
CP478_RS14065	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS14070	SM00460	Transglutaminase/protease-like homologues
CP478_RS14085	SM00460	Transglutaminase/protease-like homologues
CP478_RS14130	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS14145	SM00849	Metallo-beta-lactamase superfamily
CP478_RS14155	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CP478_RS14155	SM00954	Region found in RelA / SpoT proteins
CP478_RS14180	SM01323	CP478_RS14180
CP478_RS14195	SM00823	Phosphopantetheine attachment site
CP478_RS14195	SM01294	CP478_RS14195
CP478_RS14205	SM00382	ATPases associated with a variety of cellular activities
CP478_RS14210	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CP478_RS14220	SM00966	SpoVT / AbrB like domain 
CP478_RS14320	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CP478_RS14385	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS14460	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS14470	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS14475	SM00226	Low molecular weight phosphatase family
CP478_RS14700	SM00341	Helicase and RNase D C-terminal
CP478_RS14700	SM00474	3'-5' exonuclease
CP478_RS14705	SM00861	Transketolase, pyrimidine binding domain
CP478_RS14715	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS14740	SM00382	ATPases associated with a variety of cellular activities
CP478_RS14860	SM00529	Helix-turn-helix diphteria tox regulatory element
CP478_RS14860	SM00899	CP478_RS14860
CP478_RS14970	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS14995	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
CP478_RS14995	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CP478_RS14995	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15045	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS15060	SM00843	CP478_RS15060
CP478_RS15080	SM00849	Metallo-beta-lactamase superfamily
CP478_RS15085	SM01130	CP478_RS15085
CP478_RS15220	SM00344	helix_turn_helix ASNC type
CP478_RS15225	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CP478_RS15225	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CP478_RS15240	SM00316	Ribosomal protein S1-like RNA-binding domain
CP478_RS15240	SM00322	K homology RNA-binding domain
CP478_RS15250	SM01387	CP478_RS15250
CP478_RS15255	SM00904	Riboflavin kinase
CP478_RS15265	SM00529	Helix-turn-helix diphteria tox regulatory element
CP478_RS15265	SM00899	CP478_RS15265
CP478_RS15285	SM00857	Resolvase, N terminal domain
CP478_RS15325	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CP478_RS15490	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15535	SM00316	Ribosomal protein S1-like RNA-binding domain
CP478_RS15580	SM00327	von Willebrand factor (vWF) type A domain
CP478_RS15580	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15635	SM01230	CP478_RS15635
CP478_RS15685	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CP478_RS15705	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
CP478_RS15720	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
CP478_RS15765	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS15775	SM00857	Resolvase, N terminal domain
CP478_RS15780	SM00347	helix_turn_helix multiple antibiotic resistance protein
CP478_RS15830	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15925	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15925	SM00962	SRP54-type protein, GTPase domain
CP478_RS15925	SM00963	SRP54-type protein, helical bundle domain
CP478_RS15930	SM00487	DEAD-like helicases superfamily
CP478_RS15935	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CP478_RS15940	SM00938	Nitrogen regulatory protein P-II
CP478_RS15955	SM00382	ATPases associated with a variety of cellular activities
CP478_RS15955	SM00962	SRP54-type protein, GTPase domain
CP478_RS15955	SM00963	SRP54-type protein, helical bundle domain
CP478_RS15960	SM00968	SMC proteins Flexible Hinge Domain
CP478_RS15975	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CP478_RS15975	SM01232	CP478_RS15975
CP478_RS15985	SM00358	Double-stranded RNA binding motif
CP478_RS15985	SM00535	Ribonuclease III family
CP478_RS16000	SM00824	Thioesterase
CP478_RS16015	SM00822	CP478_RS16015
CP478_RS16015	SM00823	Phosphopantetheine attachment site
CP478_RS16015	SM00825	Beta-ketoacyl synthase
CP478_RS16015	SM00826	CP478_RS16015
CP478_RS16015	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16015	SM01294	CP478_RS16015
CP478_RS16020	SM00822	CP478_RS16020
CP478_RS16020	SM00823	Phosphopantetheine attachment site
CP478_RS16020	SM00825	Beta-ketoacyl synthase
CP478_RS16020	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16020	SM01294	CP478_RS16020
CP478_RS16025	SM00822	CP478_RS16025
CP478_RS16025	SM00823	Phosphopantetheine attachment site
CP478_RS16025	SM00825	Beta-ketoacyl synthase
CP478_RS16025	SM00826	CP478_RS16025
CP478_RS16025	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16025	SM00829	Enoylreductase
CP478_RS16030	SM00822	CP478_RS16030
CP478_RS16030	SM00823	Phosphopantetheine attachment site
CP478_RS16030	SM00825	Beta-ketoacyl synthase
CP478_RS16030	SM00826	CP478_RS16030
CP478_RS16030	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16035	SM00823	Phosphopantetheine attachment site
CP478_RS16035	SM00825	Beta-ketoacyl synthase
CP478_RS16035	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16040	SM00382	ATPases associated with a variety of cellular activities
CP478_RS16060	SM00822	CP478_RS16060
CP478_RS16060	SM00823	Phosphopantetheine attachment site
CP478_RS16060	SM00825	Beta-ketoacyl synthase
CP478_RS16060	SM00826	CP478_RS16060
CP478_RS16060	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16060	SM00829	Enoylreductase
CP478_RS16095	SM00822	CP478_RS16095
CP478_RS16095	SM00823	Phosphopantetheine attachment site
CP478_RS16095	SM00826	CP478_RS16095
CP478_RS16095	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS16095	SM00829	Enoylreductase
CP478_RS16095	SM01294	CP478_RS16095
CP478_RS16100	SM00825	Beta-ketoacyl synthase
CP478_RS16105	SM00823	Phosphopantetheine attachment site
CP478_RS16220	SM00878	Biotin carboxylase C-terminal domain
CP478_RS16225	SM00756	CP478_RS16225
CP478_RS16255	SM00487	DEAD-like helicases superfamily
CP478_RS16255	SM00490	helicase superfamily c-terminal domain
CP478_RS16260	SM01120	CP478_RS16260
CP478_RS16260	SM01121	CP478_RS16260
CP478_RS16275	SM00986	Uracil DNA glycosylase superfamily
CP478_RS16275	SM00987	UreE urease accessory protein, C-terminal domain 
CP478_RS16290	SM00857	Resolvase, N terminal domain
CP478_RS16320	SM00855	Phosphoglycerate mutase family
CP478_RS16325	SM00411	bacterial (prokaryotic) histone like domain
CP478_RS16340	SM00346	helix_turn_helix isocitrate lyase regulation
CP478_RS16380	SM01329	CP478_RS16380
CP478_RS16405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS16450	SM00903	Flavin reductase like domain
CP478_RS16460	SM00845	GatB domain
CP478_RS16485	SM00292	breast cancer carboxy-terminal domain
CP478_RS16485	SM00532	Ligase N family
CP478_RS16555	SM00563	Phosphate acyltransferases
CP478_RS16565	SM00893	Electron transfer flavoprotein domain
CP478_RS16570	SM00893	Electron transfer flavoprotein domain
CP478_RS16635	SM00382	ATPases associated with a variety of cellular activities
CP478_RS16660	SM00829	Enoylreductase
CP478_RS16725	SM00822	CP478_RS16725
CP478_RS16745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CP478_RS16745	SM00895	CP478_RS16745
CP478_RS16820	SM00507	HNH nucleases
CP478_RS16860	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS16875	SM00822	CP478_RS16875
CP478_RS16880	SM00829	Enoylreductase
CP478_RS16980	SM00382	ATPases associated with a variety of cellular activities
CP478_RS16995	SM00937	CP478_RS16995
CP478_RS17015	SM00729	Elongator protein 3, MiaB family, Radical SAM
CP478_RS17055	SM00450	Rhodanese Homology Domain
CP478_RS17060	SM00450	Rhodanese Homology Domain
CP478_RS17100	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS17100	SM01043	Bacterial transcriptional activator domain
CP478_RS17145	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CP478_RS17145	SM00387	Histidine kinase-like ATPases
CP478_RS17150	SM00421	helix_turn_helix, Lux Regulon
CP478_RS17150	SM00448	cheY-homologous receiver domain
CP478_RS17205	SM00829	Enoylreductase
CP478_RS17215	SM00448	cheY-homologous receiver domain
CP478_RS17250	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CP478_RS17255	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CP478_RS17255	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CP478_RS17425	SM00530	Helix-turn-helix XRE-family like proteins 
CP478_RS17445	SM00953	CP478_RS17445
CP478_RS17525	SM00341	Helicase and RNase D C-terminal
CP478_RS17575	SM00450	Rhodanese Homology Domain
CP478_RS17580	SM00235	Zinc-dependent metalloprotease
CP478_RS17605	SM00487	DEAD-like helicases superfamily
CP478_RS17605	SM00490	helicase superfamily c-terminal domain
CP478_RS17620	SM00855	Phosphoglycerate mutase family
CP478_RS17640	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CP478_RS17650	SM00387	Histidine kinase-like ATPases
CP478_RS17765	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS17770	SM00957	SecA DEAD-like domain
CP478_RS17770	SM00958	SecA preprotein cross-linking domain
CP478_RS17790	SM00909	Sporulation and spore germination
CP478_RS17795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS17795	SM00387	Histidine kinase-like ATPases
CP478_RS17795	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS17800	SM00448	cheY-homologous receiver domain
CP478_RS17800	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS17810	SM00996	S-adenosyl-L-homocysteine hydrolase
CP478_RS17810	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CP478_RS17945	SM00947	Carbonic anhydrase
CP478_RS17955	SM01001	AIR carboxylase
CP478_RS17960	SM01209	CP478_RS17960
CP478_RS17995	SM00450	Rhodanese Homology Domain
CP478_RS18005	SM00878	Biotin carboxylase C-terminal domain
CP478_RS18035	SM00344	helix_turn_helix ASNC type
CP478_RS18040	SM01150	CP478_RS18040
CP478_RS18060	SM00382	ATPases associated with a variety of cellular activities
CP478_RS18060	SM00487	DEAD-like helicases superfamily
CP478_RS18060	SM00490	helicase superfamily c-terminal domain
CP478_RS18065	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CP478_RS18065	SM01232	CP478_RS18065
CP478_RS18160	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CP478_RS18265	SM00422	helix_turn_helix, mercury resistance
CP478_RS18285	SM01329	CP478_RS18285
CP478_RS18405	SM00240	Forkhead associated domain
CP478_RS18425	SM00960	Roadblock/LC7 domain
CP478_RS18430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS18430	SM00387	Histidine kinase-like ATPases
CP478_RS18455	SM00481	DNA polymerase alpha chain like domain
CP478_RS18505	SM00861	Transketolase, pyrimidine binding domain
CP478_RS18555	SM00855	Phosphoglycerate mutase family
CP478_RS18560	SM00822	CP478_RS18560
CP478_RS18665	SM01240	CP478_RS18665
CP478_RS18670	SM00116	Domain in cystathionine beta-synthase and other proteins.
CP478_RS18670	SM01240	CP478_RS18670
CP478_RS18705	SM00883	Chaperonin 10 Kd subunit
CP478_RS18730	SM01005	Alanine racemase, C-terminal domain
CP478_RS18755	SM00382	ATPases associated with a variety of cellular activities
CP478_RS18865	SM00382	ATPases associated with a variety of cellular activities
CP478_RS18885	SM01110	CP478_RS18885
CP478_RS18890	SM01110	CP478_RS18890
CP478_RS18920	SM00662	RNA polymerases D
CP478_RS18925	SM00363	S4 RNA-binding domain
CP478_RS18925	SM01390	CP478_RS18925
CP478_RS18995	SM00835	Cupin
CP478_RS19060	SM00822	CP478_RS19060
CP478_RS19150	SM00822	CP478_RS19150
CP478_RS19325	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CP478_RS19390	SM00822	CP478_RS19390
CP478_RS19410	SM00882	Coenzyme A transferase
CP478_RS19415	SM00882	Coenzyme A transferase
CP478_RS19420	SM01240	CP478_RS19420
CP478_RS19500	SM00903	Flavin reductase like domain
CP478_RS19540	SM00354	helix_turn _helix lactose operon repressor
CP478_RS19560	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CP478_RS19565	SM00840	CP478_RS19565
CP478_RS19580	SM01058	CarD-like/TRCF domain
CP478_RS19590	SM00382	ATPases associated with a variety of cellular activities
CP478_RS19605	SM00947	Carbonic anhydrase
CP478_RS19610	SM00478	endonuclease III
CP478_RS19610	SM00525	CP478_RS19610
CP478_RS19635	SM00644	CP478_RS19635
CP478_RS19645	SM00382	ATPases associated with a variety of cellular activities
CP478_RS19645	SM01086	C-terminal, D2-small domain, of ClpB protein
CP478_RS19695	SM00905	Dihydroneopterin aldolase
CP478_RS19710	SM00382	ATPases associated with a variety of cellular activities
CP478_RS19890	SM00382	ATPases associated with a variety of cellular activities
CP478_RS19895	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CP478_RS19895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS19900	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CP478_RS19900	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CP478_RS19900	SM00493	CP478_RS19900
CP478_RS19910	SM00357	Cold shock protein domain
CP478_RS19915	SM00487	DEAD-like helicases superfamily
CP478_RS19915	SM00490	helicase superfamily c-terminal domain
CP478_RS20000	SM00382	ATPases associated with a variety of cellular activities
CP478_RS20060	SM00478	endonuclease III
CP478_RS20060	SM00525	CP478_RS20060
CP478_RS20070	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS20070	SM00419	helix_turn_helix, cAMP Regulatory protein
CP478_RS20075	SM00849	Metallo-beta-lactamase superfamily
CP478_RS20105	SM00740	CP478_RS20105
CP478_RS20260	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CP478_RS20270	SM00917	LeuA allosteric (dimerisation) domain
CP478_RS20275	SM00479	CP478_RS20275
CP478_RS20295	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CP478_RS20295	SM00493	CP478_RS20295
CP478_RS20305	SM00646	CP478_RS20305
CP478_RS20325	SM00382	ATPases associated with a variety of cellular activities
CP478_RS20370	SM00100	Cyclic nucleotide-monophosphate binding domain
CP478_RS20410	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS20445	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CP478_RS20525	SM00382	ATPases associated with a variety of cellular activities
CP478_RS20545	SM00849	Metallo-beta-lactamase superfamily
CP478_RS20555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CP478_RS20555	SM00387	Histidine kinase-like ATPases
CP478_RS20555	SM00388	His Kinase A (phosphoacceptor) domain
CP478_RS20560	SM00448	cheY-homologous receiver domain
CP478_RS20560	SM00862	Transcriptional regulatory protein, C terminal
CP478_RS20640	SM00829	Enoylreductase
CP478_RS20660	SM00382	ATPases associated with a variety of cellular activities
CP478_RS20755	SM00823	Phosphopantetheine attachment site
CP478_RS20755	SM00825	Beta-ketoacyl synthase
CP478_RS20755	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS20765	SM01110	CP478_RS20765
CP478_RS20790	SM00014	Acid phosphatase homologues
CP478_RS20810	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CP478_RS20835	SM00563	Phosphate acyltransferases
CP478_RS20840	SM00563	Phosphate acyltransferases
CP478_RS20845	SM00563	Phosphate acyltransferases
CP478_RS20890	SM00822	CP478_RS20890
CP478_RS20890	SM00823	Phosphopantetheine attachment site
CP478_RS20890	SM00825	Beta-ketoacyl synthase
CP478_RS20890	SM00826	CP478_RS20890
CP478_RS20890	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CP478_RS20890	SM00829	Enoylreductase
CP478_RS20910	SM00857	Resolvase, N terminal domain
CP478_RS20935	SM00342	helix_turn_helix, arabinose operon control protein
CP478_RS20960	SM00855	Phosphoglycerate mutase family
CP478_RS21080	SM00481	DNA polymerase alpha chain like domain
CP478_RS21145	SM00382	ATPases associated with a variety of cellular activities
CP478_RS21165	SM00382	ATPases associated with a variety of cellular activities
CP478_RS21230	SM00382	ATPases associated with a variety of cellular activities
CP478_RS21345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CP478_RS21390	SM00646	CP478_RS21390
CP478_RS21405	SM00470	ParB-like nuclease domain
CP478_RS21420	SM00393	Putative single-stranded nucleic acids-binding domain
CP478_RS21430	SM01234	CP478_RS21430
