locus-tag class description CCD90_RS00010 PF00308 Bacterial dnaA protein CCD90_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix CCD90_RS00010 PF11638 DnaA N-terminal domain CCD90_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CCD90_RS00015 PF02767 DNA polymerase III beta subunit, central domain CCD90_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CCD90_RS00025 PF13090 Polyphosphate kinase C-terminal domain 2 CCD90_RS00025 PF13089 Polyphosphate kinase N-terminal domain CCD90_RS00025 PF02503 Polyphosphate kinase middle domain CCD90_RS00025 PF17941 Polyphosphate kinase C-terminal domain 1 CCD90_RS00045 PF00133 tRNA synthetases class I (I, L, M and V) CCD90_RS00045 PF08264 Anticodon-binding domain of tRNA CCD90_RS00045 PF13603 Leucyl-tRNA synthetase, Domain 2 CCD90_RS00045 PF09334 tRNA synthetases class I (M) CCD90_RS00050 PF01609 Transposase DDE domain CCD90_RS00055 PF02086 D12 class N6 adenine-specific DNA methyltransferase CCD90_RS00060 PF01555 DNA methylase CCD90_RS00105 PF00121 Triosephosphate isomerase CCD90_RS00110 PF13185 GAF domain CCD90_RS00120 PF00581 Rhodanese-like domain CCD90_RS00135 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS00135 PF00593 TonB dependent receptor CCD90_RS00160 PF12833 Helix-turn-helix domain CCD90_RS00160 PF14525 AraC-binding-like domain CCD90_RS00165 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CCD90_RS00165 PF00326 Prolyl oligopeptidase family CCD90_RS00170 PF00696 Amino acid kinase family CCD90_RS00170 PF00583 Acetyltransferase (GNAT) family CCD90_RS00180 PF00156 Phosphoribosyl transferase domain CCD90_RS00195 PF00814 Glycoprotease family CCD90_RS00210 PF01116 Fructose-bisphosphate aldolase class-II CCD90_RS00215 PF00589 Phage integrase family CCD90_RS00215 PF02899 Phage integrase, N-terminal SAM-like domain CCD90_RS00220 PF02779 Transketolase, pyrimidine binding domain CCD90_RS00220 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CCD90_RS00220 PF02780 Transketolase, C-terminal domain CCD90_RS00225 PF00919 Uncharacterized protein family UPF0004 CCD90_RS00225 PF01938 TRAM domain CCD90_RS00225 PF04055 Radical SAM superfamily CCD90_RS00240 PF00202 Aminotransferase class-III CCD90_RS00255 PF00929 Exonuclease CCD90_RS00265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCD90_RS00265 PF00289 Biotin carboxylase, N-terminal domain CCD90_RS00265 PF02785 Biotin carboxylase C-terminal domain CCD90_RS00270 PF00364 Biotin-requiring enzyme CCD90_RS00280 PF02547 Queuosine biosynthesis protein CCD90_RS00290 PF02525 Flavodoxin-like fold CCD90_RS00300 PF03466 LysR substrate binding domain CCD90_RS00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCD90_RS00305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCD90_RS00305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CCD90_RS00305 PF02142 MGS-like domain CCD90_RS00320 PF04480 Protein of unknown function (DUF559) CCD90_RS00330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CCD90_RS00330 PF00117 Glutamine amidotransferase class-I CCD90_RS00345 PF05567 Neisseria PilC beta-propeller domain CCD90_RS00375 PF00578 AhpC/TSA family CCD90_RS00385 PF01047 MarR family CCD90_RS00390 PF01613 Flavin reductase like domain CCD90_RS00395 PF00483 Nucleotidyl transferase CCD90_RS00400 PF00892 EamA-like transporter family CCD90_RS00405 PF01268 Formate--tetrahydrofolate ligase CCD90_RS00410 PF01926 50S ribosome-binding GTPase CCD90_RS00410 PF06071 Protein of unknown function (DUF933) CCD90_RS00420 PF01757 Acyltransferase family CCD90_RS00425 PF00579 tRNA synthetases class I (W and Y) CCD90_RS00430 PF06574 FAD synthetase CCD90_RS00430 PF01687 Riboflavin kinase CCD90_RS00435 PF06827 Zinc finger found in FPG and IleRS CCD90_RS00435 PF00133 tRNA synthetases class I (I, L, M and V) CCD90_RS00435 PF08264 Anticodon-binding domain of tRNA CCD90_RS00445 PF01252 Signal peptidase (SPase) II CCD90_RS00450 PF02401 LytB protein CCD90_RS00455 PF13419 Haloacid dehalogenase-like hydrolase CCD90_RS00460 PF01609 Transposase DDE domain CCD90_RS00465 PF09827 CRISPR associated protein Cas2 CCD90_RS00470 PF01867 CRISPR associated protein Cas1 CCD90_RS00475 PF18541 RuvC endonuclease subdomain 3 CCD90_RS00475 PF13395 HNH endonuclease CCD90_RS00480 PF01336 OB-fold nucleic acid binding domain CCD90_RS00480 PF02811 PHP domain CCD90_RS00480 PF14579 Helix-hairpin-helix motif CCD90_RS00480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CCD90_RS00480 PF07733 Bacterial DNA polymerase III alpha NTPase domain CCD90_RS00505 PF02811 PHP domain CCD90_RS00510 PF00155 Aminotransferase class I and II CCD90_RS00515 PF02719 Polysaccharide biosynthesis protein CCD90_RS00520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CCD90_RS00530 PF02397 Bacterial sugar transferase CCD90_RS00540 PF00534 Glycosyl transferases group 1 CCD90_RS00540 PF13477 Glycosyl transferase 4-like CCD90_RS00555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CCD90_RS00555 PF01872 RibD C-terminal domain CCD90_RS00560 PF03477 ATP cone domain CCD90_RS00565 PF13230 Glutamine amidotransferases class-II CCD90_RS00575 PF01761 3-dehydroquinate synthase CCD90_RS00585 PF01202 Shikimate kinase CCD90_RS00600 PF00263 Bacterial type II and III secretion system protein CCD90_RS00600 PF11741 AMIN domain CCD90_RS00600 PF03958 Bacterial type II/III secretion system short domain CCD90_RS00600 PF07660 Secretin and TonB N terminus short domain CCD90_RS00610 PF04350 Pilus assembly protein, PilO CCD90_RS00625 PF00912 Transglycosylase CCD90_RS00625 PF00905 Penicillin binding protein transpeptidase domain CCD90_RS00625 PF17092 Penicillin-binding protein OB-like domain CCD90_RS00630 PF01926 50S ribosome-binding GTPase CCD90_RS00635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CCD90_RS00640 PF05140 ResB-like family CCD90_RS00645 PF01578 Cytochrome C assembly protein CCD90_RS00650 PF00814 Glycoprotease family CCD90_RS00660 PF00438 S-adenosylmethionine synthetase, N-terminal domain CCD90_RS00660 PF02772 S-adenosylmethionine synthetase, central domain CCD90_RS00660 PF02773 S-adenosylmethionine synthetase, C-terminal domain CCD90_RS00670 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CCD90_RS00675 PF03358 NADPH-dependent FMN reductase CCD90_RS00685 PF03600 Citrate transporter CCD90_RS00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS00695 PF00512 His Kinase A (phospho-acceptor) domain CCD90_RS00700 PF10150 Ribonuclease E/G family CCD90_RS00700 PF00575 S1 RNA binding domain CCD90_RS00705 PF00462 Glutaredoxin CCD90_RS00710 PF02556 Preprotein translocase subunit SecB CCD90_RS00715 PF00271 Helicase conserved C-terminal domain CCD90_RS00715 PF17191 RecG wedge domain CCD90_RS00715 PF00270 DEAD/DEAH box helicase CCD90_RS00725 PF02774 Semialdehyde dehydrogenase, dimerisation domain CCD90_RS00725 PF01118 Semialdehyde dehydrogenase, NAD binding domain CCD90_RS00730 PF03631 Virulence factor BrkB CCD90_RS00785 PF08479 POTRA domain, ShlB-type CCD90_RS00785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CCD90_RS00785 PF17287 POTRA domain CCD90_RS00790 PF13332 Hemagglutinin repeat CCD90_RS00790 PF05860 haemagglutination activity domain CCD90_RS00790 PF04829 Pre-toxin domain with VENN motif CCD90_RS00790 PF13332 Hemagglutinin repeat CCD90_RS00790 PF05860 haemagglutination activity domain CCD90_RS00790 PF04829 Pre-toxin domain with VENN motif CCD90_RS00815 PF01609 Transposase DDE domain CCD90_RS00840 PF00664 ABC transporter transmembrane region CCD90_RS00840 PF00005 ABC transporter CCD90_RS00840 PF03412 Peptidase C39 family CCD90_RS00845 PF03631 Virulence factor BrkB CCD90_RS00855 PF06508 Queuosine biosynthesis protein QueC CCD90_RS00865 PF01242 6-pyruvoyl tetrahydropterin synthase CCD90_RS00875 PF06993 Protein of unknown function (DUF1304) CCD90_RS00880 PF04055 Radical SAM superfamily CCD90_RS00890 PF00933 Glycosyl hydrolase family 3 N terminal domain CCD90_RS00895 PF03553 Na+/H+ antiporter family CCD90_RS00905 PF13180 PDZ domain CCD90_RS00910 PF10576 Iron-sulfur binding domain of endonuclease III CCD90_RS00910 PF00730 HhH-GPD superfamily base excision DNA repair protein CCD90_RS00910 PF00633 Helix-hairpin-helix motif CCD90_RS00930 PF07690 Major Facilitator Superfamily CCD90_RS00935 PF03553 Na+/H+ antiporter family CCD90_RS00940 PF03471 Transporter associated domain CCD90_RS00940 PF00571 CBS domain CCD90_RS00945 PF02130 Uncharacterized protein family UPF0054 CCD90_RS00950 PF03900 Porphobilinogen deaminase, C-terminal domain CCD90_RS00950 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CCD90_RS00960 PF00155 Aminotransferase class I and II CCD90_RS00975 PF02652 L-lactate permease CCD90_RS00980 PF12850 Calcineurin-like phosphoesterase superfamily domain CCD90_RS00995 PF06470 SMC proteins Flexible Hinge Domain CCD90_RS00995 PF02463 RecF/RecN/SMC N terminal domain CCD90_RS01005 PF08240 Alcohol dehydrogenase GroES-like domain CCD90_RS01005 PF00107 Zinc-binding dehydrogenase CCD90_RS01010 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS01010 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor CCD90_RS01020 PF12704 MacB-like periplasmic core domain CCD90_RS01020 PF02687 FtsX-like permease family CCD90_RS01020 PF00005 ABC transporter CCD90_RS01025 PF10411 Disulfide bond isomerase protein N-terminus CCD90_RS01025 PF13098 Thioredoxin-like domain CCD90_RS01030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CCD90_RS01030 PF18074 Primosomal protein N C-terminal domain CCD90_RS01030 PF00270 DEAD/DEAH box helicase CCD90_RS01030 PF17764 3′ DNA-binding domain (3′BD) CCD90_RS01030 PF00271 Helicase conserved C-terminal domain CCD90_RS01045 PF01609 Transposase DDE domain CCD90_RS01060 PF00012 Hsp70 protein CCD90_RS01075 PF01521 Iron-sulphur cluster biosynthesis CCD90_RS01085 PF03109 ABC1 family CCD90_RS01090 PF06426 Serine acetyltransferase, N-terminal CCD90_RS01090 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS01095 PF01025 GrpE CCD90_RS01100 PF04400 (Na+)-NQR maturation NqrM CCD90_RS01105 PF02424 ApbE family CCD90_RS01110 PF00175 Oxidoreductase NAD-binding domain CCD90_RS01110 PF00970 Oxidoreductase FAD-binding domain CCD90_RS01110 PF00111 2Fe-2S iron-sulfur cluster binding domain CCD90_RS01115 PF02508 Rnf-Nqr subunit, membrane protein CCD90_RS01120 PF02508 Rnf-Nqr subunit, membrane protein CCD90_RS01125 PF04205 FMN-binding domain CCD90_RS01130 PF03116 NQR2, RnfD, RnfE family CCD90_RS01135 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CCD90_RS01135 PF11973 NQRA C-terminal domain CCD90_RS01150 PF04304 Protein of unknown function (DUF454) CCD90_RS01160 PF01037 Lrp/AsnC ligand binding domain CCD90_RS01170 PF08669 Glycine cleavage T-protein C-terminal barrel domain CCD90_RS01170 PF01571 Aminomethyltransferase folate-binding domain CCD90_RS01175 PF01597 Glycine cleavage H-protein CCD90_RS01180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CCD90_RS01180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CCD90_RS01180 PF01488 Shikimate / quinate 5-dehydrogenase CCD90_RS01200 PF00005 ABC transporter CCD90_RS01205 PF01609 Transposase DDE domain CCD90_RS01210 PF05573 NosL CCD90_RS01230 PF03412 Peptidase C39 family CCD90_RS01230 PF00664 ABC transporter transmembrane region CCD90_RS01230 PF00005 ABC transporter CCD90_RS01240 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS01240 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS01245 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS01245 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS01250 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS01250 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS01260 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS01260 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS01285 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS01285 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS01290 PF01297 Zinc-uptake complex component A periplasmic CCD90_RS01295 PF00950 ABC 3 transport family CCD90_RS01300 PF00005 ABC transporter CCD90_RS01310 PF01245 Ribosomal protein L19 CCD90_RS01315 PF01746 tRNA (Guanine-1)-methyltransferase CCD90_RS01320 PF01782 RimM N-terminal domain CCD90_RS01320 PF05239 PRC-barrel domain CCD90_RS01325 PF00886 Ribosomal protein S16 CCD90_RS01335 PF00512 His Kinase A (phospho-acceptor) domain CCD90_RS01335 PF00672 HAMP domain CCD90_RS01335 PF16527 Two-component sensor protein CpxA, periplasmic domain CCD90_RS01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS01340 PF00072 Response regulator receiver domain CCD90_RS01340 PF00486 Transcriptional regulatory protein, C terminal CCD90_RS01355 PF02545 Maf-like protein CCD90_RS01360 PF00902 Sec-independent protein translocase protein (TatC) CCD90_RS01365 PF02416 mttA/Hcf106 family CCD90_RS01370 PF02416 mttA/Hcf106 family CCD90_RS01380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CCD90_RS01385 PF00107 Zinc-binding dehydrogenase CCD90_RS01385 PF08240 Alcohol dehydrogenase GroES-like domain CCD90_RS01390 PF00850 Histone deacetylase domain CCD90_RS01395 PF02699 Preprotein translocase subunit CCD90_RS01400 PF02355 Protein export membrane protein CCD90_RS01400 PF13721 SecD export protein N-terminal TM region CCD90_RS01400 PF07549 SecD/SecF GG Motif CCD90_RS01405 PF02355 Protein export membrane protein CCD90_RS01405 PF07549 SecD/SecF GG Motif CCD90_RS01410 PF00312 Ribosomal protein S15 CCD90_RS01420 PF00005 ABC transporter CCD90_RS01420 PF08402 TOBE domain CCD90_RS01425 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS01430 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS01440 PF01266 FAD dependent oxidoreductase CCD90_RS01450 PF00909 Ammonium Transporter Family CCD90_RS01475 PF12762 ISXO2-like transposase domain CCD90_RS01480 PF07497 Rho termination factor, RNA-binding domain CCD90_RS01480 PF07498 Rho termination factor, N-terminal domain CCD90_RS01480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCD90_RS01485 PF02896 PEP-utilising enzyme, TIM barrel domain CCD90_RS01485 PF00391 PEP-utilising enzyme, mobile domain CCD90_RS01485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CCD90_RS01495 PF03618 Kinase/pyrophosphorylase CCD90_RS01500 PF13419 Haloacid dehalogenase-like hydrolase CCD90_RS01505 PF16916 Dimerisation domain of Zinc Transporter CCD90_RS01505 PF01545 Cation efflux family CCD90_RS01510 PF04305 Protein of unknown function (DUF455) CCD90_RS01520 PF03548 Outer membrane lipoprotein carrier protein LolA CCD90_RS01530 PF13416 Bacterial extracellular solute-binding protein CCD90_RS01540 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS01555 PF03144 Elongation factor Tu domain 2 CCD90_RS01555 PF00009 Elongation factor Tu GTP binding domain CCD90_RS01555 PF16658 Class II release factor RF3, C-terminal domain CCD90_RS01560 PF01502 Phosphoribosyl-AMP cyclohydrolase CCD90_RS01565 PF00977 Histidine biosynthesis protein CCD90_RS01570 PF00977 Histidine biosynthesis protein CCD90_RS01575 PF00117 Glutamine amidotransferase class-I CCD90_RS01580 PF07085 DRTGG domain CCD90_RS01580 PF01515 Phosphate acetyl/butaryl transferase CCD90_RS01585 PF00005 ABC transporter CCD90_RS01585 PF17845 FbpC C-terminal regulatory nucleotide binding domain CCD90_RS01590 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS01595 PF01547 Bacterial extracellular solute-binding protein CCD90_RS01610 PF00206 Lyase CCD90_RS01610 PF14698 Argininosuccinate lyase C-terminal CCD90_RS01615 PF00483 Nucleotidyl transferase CCD90_RS01620 PF01725 Ham1 family CCD90_RS01630 PF00719 Inorganic pyrophosphatase CCD90_RS01635 PF00293 NUDIX domain CCD90_RS01700 PF02386 Cation transport protein CCD90_RS01705 PF00149 Calcineurin-like phosphoesterase CCD90_RS01710 PF01042 Endoribonuclease L-PSP CCD90_RS01715 PF02462 Opacity family porin protein CCD90_RS01730 PF06969 HemN C-terminal domain CCD90_RS01730 PF04055 Radical SAM superfamily CCD90_RS01735 PF00533 BRCA1 C Terminus (BRCT) domain CCD90_RS01735 PF01653 NAD-dependent DNA ligase adenylation domain CCD90_RS01735 PF03120 NAD-dependent DNA ligase OB-fold domain CCD90_RS01735 PF12826 Helix-hairpin-helix motif CCD90_RS01735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CCD90_RS01750 PF01510 N-acetylmuramoyl-L-alanine amidase CCD90_RS01755 PF02618 YceG-like family CCD90_RS01760 PF02223 Thymidylate kinase CCD90_RS01765 PF00390 Malic enzyme, N-terminal domain CCD90_RS01765 PF03949 Malic enzyme, NAD binding domain CCD90_RS01765 PF01515 Phosphate acetyl/butaryl transferase CCD90_RS01780 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CCD90_RS01790 PF03966 Trm112p-like protein CCD90_RS01795 PF02348 Cytidylyltransferase CCD90_RS01810 PF00290 Tryptophan synthase alpha chain CCD90_RS01815 PF01039 Carboxyl transferase domain CCD90_RS01815 PF17848 Acetyl-coA carboxylase zinc finger domain CCD90_RS01825 PF01206 Sulfurtransferase TusA CCD90_RS01835 PF01979 Amidohydrolase family CCD90_RS01840 PF01029 NusB family CCD90_RS01845 PF00885 6,7-dimethyl-8-ribityllumazine synthase CCD90_RS01860 PF00035 Double-stranded RNA binding motif CCD90_RS01860 PF14622 Ribonuclease-III-like CCD90_RS01865 PF01926 50S ribosome-binding GTPase CCD90_RS01865 PF07650 KH domain CCD90_RS01880 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CCD90_RS01885 PF01272 Transcription elongation factor, GreA/GreB, C-term CCD90_RS01885 PF03449 Transcription elongation factor, N-terminal CCD90_RS01890 PF00156 Phosphoribosyl transferase domain CCD90_RS01905 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS01905 PF08245 Mur ligase middle domain CCD90_RS01920 PF00005 ABC transporter CCD90_RS01925 PF00398 Ribosomal RNA adenine dimethylase CCD90_RS01940 PF00291 Pyridoxal-phosphate dependent enzyme CCD90_RS01950 PF03212 Pertactin CCD90_RS01950 PF03797 Autotransporter beta-domain CCD90_RS01950 PF02395 Immunoglobulin A1 protease CCD90_RS01960 PF03772 Competence protein CCD90_RS01960 PF00753 Metallo-beta-lactamase superfamily CCD90_RS01965 PF13525 Outer membrane lipoprotein CCD90_RS01970 PF00849 RNA pseudouridylate synthase CCD90_RS01970 PF01479 S4 domain CCD90_RS01975 PF01758 Sodium Bile acid symporter family CCD90_RS01990 PF02578 Multi-copper polyphenol oxidoreductase laccase CCD90_RS01995 PF04390 Lipopolysaccharide-assembly CCD90_RS02000 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CCD90_RS02000 PF06144 DNA polymerase III, delta subunit CCD90_RS02015 PF08340 Domain of unknown function (DUF1732) CCD90_RS02015 PF03755 YicC-like family, N-terminal region CCD90_RS02020 PF04542 Sigma-70 region 2 CCD90_RS02020 PF00140 Sigma-70 factor, region 1.2 CCD90_RS02020 PF04545 Sigma-70, region 4 CCD90_RS02030 PF00795 Carbon-nitrogen hydrolase CCD90_RS02060 PF00762 Ferrochelatase CCD90_RS02065 PF01702 Queuine tRNA-ribosyltransferase CCD90_RS02075 PF02824 TGS domain CCD90_RS02075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCD90_RS02075 PF03129 Anticodon binding domain CCD90_RS02075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CCD90_RS02080 PF05198 Translation initiation factor IF-3, N-terminal domain CCD90_RS02080 PF00707 Translation initiation factor IF-3, C-terminal domain CCD90_RS02085 PF01632 Ribosomal protein L35 CCD90_RS02090 PF00453 Ribosomal protein L20 CCD90_RS02100 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CCD90_RS02100 PF01409 tRNA synthetases class II core domain (F) CCD90_RS02115 PF03483 B3/4 domain CCD90_RS02115 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CCD90_RS02115 PF01588 Putative tRNA binding domain CCD90_RS02115 PF03147 Ferredoxin-fold anticodon binding domain CCD90_RS02115 PF03484 tRNA synthetase B5 domain CCD90_RS02120 PF00216 Bacterial DNA-binding protein CCD90_RS02145 PF00202 Aminotransferase class-III CCD90_RS02145 PF06968 Biotin and Thiamin Synthesis associated domain CCD90_RS02145 PF04055 Radical SAM superfamily CCD90_RS02175 PF04345 Chorismate lyase CCD90_RS02180 PF01040 UbiA prenyltransferase family CCD90_RS02185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CCD90_RS02190 PF07475 HPr Serine kinase C-terminal domain CCD90_RS02190 PF02603 HPr Serine kinase N terminus CCD90_RS02195 PF03668 P-loop ATPase protein family CCD90_RS02200 PF01926 50S ribosome-binding GTPase CCD90_RS02205 PF04079 Segregation and condensation complex subunit ScpB CCD90_RS02210 PF02463 RecF/RecN/SMC N terminal domain CCD90_RS02235 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CCD90_RS02235 PF01266 FAD dependent oxidoreductase CCD90_RS02245 PF01209 ubiE/COQ5 methyltransferase family CCD90_RS02255 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CCD90_RS02265 PF06962 Putative rRNA methylase CCD90_RS02270 PF17209 Hfq protein CCD90_RS02275 PF00768 D-alanyl-D-alanine carboxypeptidase CCD90_RS02280 PF00578 AhpC/TSA family CCD90_RS02285 PF00589 Phage integrase family CCD90_RS02285 PF02899 Phage integrase, N-terminal SAM-like domain CCD90_RS02325 PF04321 RmlD substrate binding domain CCD90_RS02330 PF01259 SAICAR synthetase CCD90_RS02340 PF00013 KH domain CCD90_RS02340 PF01138 3' exoribonuclease family, domain 1 CCD90_RS02340 PF03725 3' exoribonuclease family, domain 2 CCD90_RS02340 PF00575 S1 RNA binding domain CCD90_RS02340 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CCD90_RS02355 PF01678 Diaminopimelate epimerase CCD90_RS02365 PF00291 Pyridoxal-phosphate dependent enzyme CCD90_RS02380 PF10502 Signal peptidase, peptidase S26 CCD90_RS02385 PF00009 Elongation factor Tu GTP binding domain CCD90_RS02385 PF00679 Elongation factor G C-terminus CCD90_RS02385 PF03144 Elongation factor Tu domain 2 CCD90_RS02385 PF06421 GTP-binding protein LepA C-terminus CCD90_RS02390 PF01048 Phosphorylase superfamily CCD90_RS02395 PF00437 Type II/IV secretion system protein CCD90_RS02400 PF09115 DNA polymerase III, delta subunit, C terminal CCD90_RS02410 PF01026 TatD related DNase CCD90_RS02420 PF00462 Glutaredoxin CCD90_RS02460 PF01208 Uroporphyrinogen decarboxylase (URO-D) CCD90_RS02465 PF18073 Rubredoxin metal binding domain CCD90_RS02485 PF12705 PD-(D/E)XK nuclease superfamily CCD90_RS02485 PF00580 UvrD/REP helicase N-terminal domain CCD90_RS02485 PF13361 UvrD-like helicase C-terminal domain CCD90_RS02490 PF04261 Dyp-type peroxidase family CCD90_RS02500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CCD90_RS02505 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS02510 PF00005 ABC transporter CCD90_RS02515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CCD90_RS02515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CCD90_RS02515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CCD90_RS02515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CCD90_RS02520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCD90_RS02525 PF00939 Sodium:sulfate symporter transmembrane region CCD90_RS02545 PF01195 Peptidyl-tRNA hydrolase CCD90_RS02550 PF03658 RnfH family Ubiquitin CCD90_RS02555 PF03364 Polyketide cyclase / dehydrase and lipid transport CCD90_RS02560 PF01434 Peptidase family M41 CCD90_RS02560 PF00004 ATPase family associated with various cellular activities (AAA) CCD90_RS02560 PF06480 FtsH Extracellular CCD90_RS02560 PF17862 AAA+ lid domain CCD90_RS02565 PF01728 FtsJ-like methyltransferase CCD90_RS02570 PF01985 CRS1 / YhbY (CRM) domain CCD90_RS02575 PF00490 Delta-aminolevulinic acid dehydratase CCD90_RS02580 PF01053 Cys/Met metabolism PLP-dependent enzyme CCD90_RS02585 PF02649 Type I GTP cyclohydrolase folE2 CCD90_RS02590 PF00881 Nitroreductase family CCD90_RS02595 PF00849 RNA pseudouridylate synthase CCD90_RS02595 PF01479 S4 domain CCD90_RS02600 PF01513 ATP-NAD kinase CCD90_RS02610 PF01370 NAD dependent epimerase/dehydratase family CCD90_RS02615 PF00440 Bacterial regulatory proteins, tetR family CCD90_RS02615 PF08359 YsiA-like protein, C-terminal region CCD90_RS02620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CCD90_RS02620 PF01565 FAD binding domain CCD90_RS02625 PF01554 MatE CCD90_RS02640 PF13393 Histidyl-tRNA synthetase CCD90_RS02645 PF00709 Adenylosuccinate synthetase CCD90_RS02690 PF01435 Peptidase family M48 CCD90_RS02700 PF05191 Adenylate kinase, active site lid CCD90_RS02710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CCD90_RS02715 PF01467 Cytidylyltransferase-like CCD90_RS02715 PF00294 pfkB family carbohydrate kinase CCD90_RS02720 PF00145 C-5 cytosine-specific DNA methylase CCD90_RS02720 PF01381 Helix-turn-helix CCD90_RS02730 PF01370 NAD dependent epimerase/dehydratase family CCD90_RS02735 PF02384 N-6 DNA Methylase CCD90_RS02735 PF12161 HsdM N-terminal domain CCD90_RS02755 PF01420 Type I restriction modification DNA specificity domain CCD90_RS02760 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CCD90_RS02760 PF18766 SWI2/SNF2 ATPase CCD90_RS02760 PF12008 Type I restriction and modification enzyme - subunit R C terminal CCD90_RS02765 PF17871 AAA lid domain CCD90_RS02765 PF10431 C-terminal, D2-small domain, of ClpB protein CCD90_RS02765 PF02861 Clp amino terminal domain, pathogenicity island component CCD90_RS02765 PF00004 ATPase family associated with various cellular activities (AAA) CCD90_RS02765 PF07724 AAA domain (Cdc48 subfamily) CCD90_RS02770 PF02617 ATP-dependent Clp protease adaptor protein ClpS CCD90_RS02775 PF00313 'Cold-shock' DNA-binding domain CCD90_RS02785 PF01523 Putative modulator of DNA gyrase CCD90_RS02790 PF04751 Protein of unknown function (DUF615) CCD90_RS02800 PF01368 DHH family CCD90_RS02800 PF02272 DHHA1 domain CCD90_RS02800 PF17768 RecJ OB domain CCD90_RS02805 PF12627 Probable RNA and SrmB- binding site of polymerase A CCD90_RS02805 PF12626 Polymerase A arginine-rich C-terminus CCD90_RS02805 PF01743 Poly A polymerase head domain CCD90_RS02815 PF02562 PhoH-like protein CCD90_RS02820 PF13439 Glycosyltransferase Family 4 CCD90_RS02830 PF00692 dUTPase CCD90_RS02840 PF04381 Putative exonuclease, RdgC CCD90_RS02845 PF01926 50S ribosome-binding GTPase CCD90_RS02845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CCD90_RS02850 PF09976 Tetratricopeptide repeat-like domain CCD90_RS02855 PF03129 Anticodon binding domain CCD90_RS02855 PF13393 Histidyl-tRNA synthetase CCD90_RS02940 PF00849 RNA pseudouridylate synthase CCD90_RS02960 PF02548 Ketopantoate hydroxymethyltransferase CCD90_RS02965 PF02569 Pantoate-beta-alanine ligase CCD90_RS02975 PF03550 Outer membrane lipoprotein LolB CCD90_RS02980 PF00288 GHMP kinases N terminal domain CCD90_RS02980 PF08544 GHMP kinases C terminal CCD90_RS03000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CCD90_RS03000 PF14572 Phosphoribosyl synthetase-associated domain CCD90_RS03005 PF01386 Ribosomal L25p family CCD90_RS03005 PF14693 Ribosomal protein TL5, C-terminal domain CCD90_RS03010 PF07943 Penicillin-binding protein 5, C-terminal domain CCD90_RS03010 PF00768 D-alanyl-D-alanine carboxypeptidase CCD90_RS03020 PF00585 C-terminal regulatory domain of Threonine dehydratase CCD90_RS03020 PF00291 Pyridoxal-phosphate dependent enzyme CCD90_RS03025 PF00005 ABC transporter CCD90_RS03030 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS03035 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS03050 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CCD90_RS03055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CCD90_RS03055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CCD90_RS03065 PF03796 DnaB-like helicase C terminal domain CCD90_RS03065 PF00772 DnaB-like helicase N terminal domain CCD90_RS03070 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS03070 PF12019 Type II transport protein GspH CCD90_RS03090 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS03090 PF00114 Pilin (bacterial filament) CCD90_RS03110 PF00692 dUTPase CCD90_RS03115 PF00155 Aminotransferase class I and II CCD90_RS03120 PF03883 Peroxide stress protein YaaA CCD90_RS03135 PF01609 Transposase DDE domain CCD90_RS03145 PF03971 Monomeric isocitrate dehydrogenase CCD90_RS03160 PF07922 Glycosyltransferase family 52 CCD90_RS03165 PF01322 Cytochrome C' CCD90_RS03170 PF00106 short chain dehydrogenase CCD90_RS03175 PF03061 Thioesterase superfamily CCD90_RS03180 PF02462 Opacity family porin protein CCD90_RS03190 PF00561 alpha/beta hydrolase fold CCD90_RS03195 PF06804 NlpB/DapX lipoprotein CCD90_RS03200 PF00701 Dihydrodipicolinate synthetase family CCD90_RS03215 PF08032 RNA 2'-O ribose methyltransferase substrate binding CCD90_RS03215 PF00588 SpoU rRNA Methylase family CCD90_RS03225 PF14437 MafB19-like deaminase CCD90_RS03250 PF01132 Elongation factor P (EF-P) OB domain CCD90_RS03250 PF08207 Elongation factor P (EF-P) KOW-like domain CCD90_RS03250 PF09285 Elongation factor P, C-terminal CCD90_RS03260 PF00561 alpha/beta hydrolase fold CCD90_RS03260 PF07021 Methionine biosynthesis protein MetW CCD90_RS03265 PF00561 alpha/beta hydrolase fold CCD90_RS03275 PF00444 Ribosomal protein L36 CCD90_RS03280 PF01197 Ribosomal protein L31 CCD90_RS03285 PF02219 Methylenetetrahydrofolate reductase CCD90_RS03290 PF01717 Cobalamin-independent synthase, Catalytic domain CCD90_RS03290 PF08267 Cobalamin-independent synthase, N-terminal domain CCD90_RS03300 PF08534 Redoxin CCD90_RS03300 PF00462 Glutaredoxin CCD90_RS03305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCD90_RS03305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCD90_RS03325 PF00890 FAD binding domain CCD90_RS03325 PF02910 Fumarate reductase flavoprotein C-term CCD90_RS03330 PF13085 2Fe-2S iron-sulfur cluster binding domain CCD90_RS03335 PF03937 Flavinator of succinate dehydrogenase CCD90_RS03345 PF00285 Citrate synthase, C-terminal domain CCD90_RS03350 PF16870 2-oxoglutarate dehydrogenase C-terminal CCD90_RS03350 PF02779 Transketolase, pyrimidine binding domain CCD90_RS03350 PF16078 2-oxoglutarate dehydrogenase N-terminus CCD90_RS03350 PF00676 Dehydrogenase E1 component CCD90_RS03355 PF02817 e3 binding domain CCD90_RS03355 PF00364 Biotin-requiring enzyme CCD90_RS03355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CCD90_RS03370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCD90_RS03370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCD90_RS03380 PF00549 CoA-ligase CCD90_RS03380 PF08442 ATP-grasp domain CCD90_RS03385 PF00549 CoA-ligase CCD90_RS03385 PF02629 CoA binding domain CCD90_RS03390 PF01797 Transposase IS200 like CCD90_RS03395 PF00145 C-5 cytosine-specific DNA methylase CCD90_RS03395 PF13411 MerR HTH family regulatory protein CCD90_RS03405 PF17755 UvrA DNA-binding domain CCD90_RS03405 PF17760 UvrA interaction domain CCD90_RS03410 PF02666 Phosphatidylserine decarboxylase CCD90_RS03420 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS03420 PF00593 TonB dependent receptor CCD90_RS03430 PF00117 Glutamine amidotransferase class-I CCD90_RS03435 PF02885 Glycosyl transferase family, helical bundle domain CCD90_RS03435 PF00591 Glycosyl transferase family, a/b domain CCD90_RS03490 PF02525 Flavodoxin-like fold CCD90_RS03495 PF02233 NAD(P) transhydrogenase beta subunit CCD90_RS03505 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CCD90_RS03505 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CCD90_RS03505 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CCD90_RS03525 PF01808 AICARFT/IMPCHase bienzyme CCD90_RS03525 PF02142 MGS-like domain CCD90_RS03585 PF07411 Domain of unknown function (DUF1508) CCD90_RS03625 PF01609 Transposase DDE domain CCD90_RS03630 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CCD90_RS03630 PF03895 YadA-like membrane anchor domain CCD90_RS03630 PF13018 Extended Signal Peptide of Type V secretion system CCD90_RS03630 PF05662 Coiled stalk of trimeric autotransporter adhesin CCD90_RS03635 PF00301 Rubredoxin CCD90_RS03660 PF01565 FAD binding domain CCD90_RS03660 PF09330 D-lactate dehydrogenase, membrane binding CCD90_RS03675 PF01207 Dihydrouridine synthase (Dus) CCD90_RS03685 PF01609 Transposase DDE domain CCD90_RS03770 PF13333 Integrase core domain CCD90_RS03770 PF00665 Integrase core domain CCD90_RS03770 PF13276 HTH-like domain CCD90_RS03805 PF02222 ATP-grasp domain CCD90_RS03805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CCD90_RS03815 PF00425 chorismate binding enzyme CCD90_RS03815 PF04715 Anthranilate synthase component I, N terminal region CCD90_RS03825 PF12848 ABC transporter CCD90_RS03825 PF16326 ABC transporter C-terminal domain CCD90_RS03825 PF00005 ABC transporter CCD90_RS03830 PF09335 SNARE associated Golgi protein CCD90_RS03840 PF01609 Transposase DDE domain CCD90_RS03845 PF00464 Serine hydroxymethyltransferase CCD90_RS03870 PF04325 Protein of unknown function (DUF465) CCD90_RS03875 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CCD90_RS03880 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CCD90_RS03885 PF02660 Glycerol-3-phosphate acyltransferase CCD90_RS03895 PF00293 NUDIX domain CCD90_RS03905 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CCD90_RS03920 PF01580 FtsK/SpoIIIE family CCD90_RS03920 PF09397 Ftsk gamma domain CCD90_RS03920 PF17854 FtsK alpha domain CCD90_RS03925 PF00171 Aldehyde dehydrogenase family CCD90_RS03930 PF01472 PUA domain CCD90_RS03930 PF00696 Amino acid kinase family CCD90_RS03940 PF08502 LeuA allosteric (dimerisation) domain CCD90_RS03940 PF00682 HMGL-like CCD90_RS03945 PF03695 Uncharacterised protein family (UPF0149) CCD90_RS03945 PF02810 SEC-C motif CCD90_RS03950 PF01790 Prolipoprotein diacylglyceryl transferase CCD90_RS03955 PF18027 Cytosolic carboxypeptidase N-terminal domain CCD90_RS03955 PF00246 Zinc carboxypeptidase CCD90_RS03960 PF00696 Amino acid kinase family CCD90_RS04010 PF00308 Bacterial dnaA protein CCD90_RS04010 PF08299 Bacterial dnaA protein helix-turn-helix CCD90_RS04015 PF06472 ABC transporter transmembrane region 2 CCD90_RS04015 PF00005 ABC transporter CCD90_RS04050 PF07352 Bacteriophage Mu Gam like protein CCD90_RS04060 PF10548 P22AR C-terminal domain CCD90_RS04060 PF08346 AntA/AntB antirepressor CCD90_RS04140 PF07411 Domain of unknown function (DUF1508) CCD90_RS04180 PF06074 Protein of unknown function (DUF935) CCD90_RS04190 PF05069 Phage virion morphogenesis family CCD90_RS04195 PF10123 Mu-like prophage I protein CCD90_RS04200 PF10124 Mu-like prophage major head subunit gpT CCD90_RS04325 PF06472 ABC transporter transmembrane region 2 CCD90_RS04325 PF00005 ABC transporter CCD90_RS04335 PF05643 Putative bacterial lipoprotein (DUF799) CCD90_RS04345 PF03783 Curli production assembly/transport component CsgG CCD90_RS04355 PF01593 Flavin containing amine oxidoreductase CCD90_RS04370 PF00012 Hsp70 protein CCD90_RS04380 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) CCD90_RS04385 PF00111 2Fe-2S iron-sulfur cluster binding domain CCD90_RS04405 PF04384 Iron-sulphur cluster assembly CCD90_RS04410 PF01479 S4 domain CCD90_RS04415 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CCD90_RS04420 PF01171 PP-loop family CCD90_RS04420 PF09179 TilS substrate binding domain CCD90_RS04425 PF08032 RNA 2'-O ribose methyltransferase substrate binding CCD90_RS04425 PF00588 SpoU rRNA Methylase family CCD90_RS04445 PF08245 Mur ligase middle domain CCD90_RS04445 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS04445 PF01225 Mur ligase family, catalytic domain CCD90_RS04455 PF06968 Biotin and Thiamin Synthesis associated domain CCD90_RS04455 PF04055 Radical SAM superfamily CCD90_RS04480 PF00920 Dehydratase family CCD90_RS04485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CCD90_RS04485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CCD90_RS04490 PF00175 Oxidoreductase NAD-binding domain CCD90_RS04490 PF00258 Flavodoxin CCD90_RS04490 PF00667 FAD binding domain CCD90_RS04495 PF00009 Elongation factor Tu GTP binding domain CCD90_RS04500 PF01507 Phosphoadenosine phosphosulfate reductase family CCD90_RS04505 PF01507 Phosphoadenosine phosphosulfate reductase family CCD90_RS04510 PF10414 Sirohaem synthase dimerisation region CCD90_RS04510 PF14824 Sirohaem biosynthesis protein central CCD90_RS04510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCD90_RS04520 PF01256 Carbohydrate kinase CCD90_RS04525 PF00009 Elongation factor Tu GTP binding domain CCD90_RS04525 PF03144 Elongation factor Tu domain 2 CCD90_RS04525 PF00679 Elongation factor G C-terminus CCD90_RS04550 PF08461 Ribonuclease R winged-helix domain CCD90_RS04550 PF08206 Ribonuclease B OB domain CCD90_RS04550 PF00773 RNB domain CCD90_RS04550 PF17876 Cold shock domain CCD90_RS04550 PF00575 S1 RNA binding domain CCD90_RS04560 PF00478 IMP dehydrogenase / GMP reductase domain CCD90_RS04560 PF00571 CBS domain CCD90_RS04565 PF08335 GlnD PII-uridylyltransferase CCD90_RS04565 PF01966 HD domain CCD90_RS04570 PF01381 Helix-turn-helix CCD90_RS04580 PF00210 Ferritin-like domain CCD90_RS04585 PF00210 Ferritin-like domain CCD90_RS04590 PF04055 Radical SAM superfamily CCD90_RS04590 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CCD90_RS04595 PF03099 Biotin/lipoate A/B protein ligase family CCD90_RS04600 PF04359 Protein of unknown function (DUF493) CCD90_RS04605 PF01594 AI-2E family transporter CCD90_RS04610 PF16200 C-terminal region of band_7 CCD90_RS04610 PF01145 SPFH domain / Band 7 family CCD90_RS04620 PF03167 Uracil DNA glycosylase superfamily CCD90_RS04645 PF12848 ABC transporter CCD90_RS04645 PF00005 ABC transporter CCD90_RS04655 PF01842 ACT domain CCD90_RS04655 PF00742 Homoserine dehydrogenase CCD90_RS04655 PF03447 Homoserine dehydrogenase, NAD binding domain CCD90_RS04665 PF00216 Bacterial DNA-binding protein CCD90_RS04670 PF05362 Lon protease (S16) C-terminal proteolytic domain CCD90_RS04670 PF02190 ATP-dependent protease La (LON) substrate-binding domain CCD90_RS04670 PF00004 ATPase family associated with various cellular activities (AAA) CCD90_RS04680 PF05175 Methyltransferase small domain CCD90_RS04680 PF17827 PrmC N-terminal domain CCD90_RS04685 PF13538 UvrD-like helicase C-terminal domain CCD90_RS04690 PF00005 ABC transporter CCD90_RS04695 PF02687 FtsX-like permease family CCD90_RS04695 PF12704 MacB-like periplasmic core domain CCD90_RS04705 PF02132 RecR protein CCD90_RS04705 PF13662 Toprim domain CCD90_RS04715 PF03960 ArsC family CCD90_RS04720 PF00005 ABC transporter CCD90_RS04720 PF12848 ABC transporter CCD90_RS04725 PF01966 HD domain CCD90_RS04725 PF01743 Poly A polymerase head domain CCD90_RS04725 PF12627 Probable RNA and SrmB- binding site of polymerase A CCD90_RS04735 PF17864 RuvB AAA lid domain CCD90_RS04735 PF05491 RuvB C-terminal winged helix domain CCD90_RS04735 PF05496 Holliday junction DNA helicase RuvB P-loop domain CCD90_RS04740 PF00834 Ribulose-phosphate 3 epimerase family CCD90_RS04760 PF00672 HAMP domain CCD90_RS04760 PF07730 Histidine kinase CCD90_RS04760 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CCD90_RS04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS04765 PF00196 Bacterial regulatory proteins, luxR family CCD90_RS04765 PF00072 Response regulator receiver domain CCD90_RS04770 PF00586 AIR synthase related protein, N-terminal domain CCD90_RS04770 PF02769 AIR synthase related protein, C-terminal domain CCD90_RS04790 PF00925 GTP cyclohydrolase II CCD90_RS04800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CCD90_RS04800 PF00925 GTP cyclohydrolase II CCD90_RS04810 PF02384 N-6 DNA Methylase CCD90_RS04810 PF12161 HsdM N-terminal domain CCD90_RS04830 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CCD90_RS04830 PF18766 SWI2/SNF2 ATPase CCD90_RS04830 PF12008 Type I restriction and modification enzyme - subunit R C terminal CCD90_RS04835 PF12002 MgsA AAA+ ATPase C terminal CCD90_RS04835 PF16193 AAA C-terminal domain CCD90_RS04835 PF00004 ATPase family associated with various cellular activities (AAA) CCD90_RS04850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCD90_RS04850 PF03466 LysR substrate binding domain CCD90_RS04865 PF00291 Pyridoxal-phosphate dependent enzyme CCD90_RS04865 PF14821 Threonine synthase N terminus CCD90_RS04875 PF00175 Oxidoreductase NAD-binding domain CCD90_RS04875 PF00970 Oxidoreductase FAD-binding domain CCD90_RS04885 PF00403 Heavy-metal-associated domain CCD90_RS04890 PF01926 50S ribosome-binding GTPase CCD90_RS04890 PF13167 GTP-binding GTPase N-terminal CCD90_RS04890 PF16360 GTP-binding GTPase Middle Region CCD90_RS04900 PF02677 Epoxyqueuosine reductase QueH CCD90_RS04905 PF04002 RadC-like JAB domain CCD90_RS04915 PF00330 Aconitase family (aconitate hydratase) CCD90_RS04925 PF00694 Aconitase C-terminal domain CCD90_RS04930 PF00145 C-5 cytosine-specific DNA methylase CCD90_RS04935 PF09564 NgoBV restriction endonuclease CCD90_RS04940 PF00180 Isocitrate/isopropylmalate dehydrogenase CCD90_RS04945 PF04264 YceI-like domain CCD90_RS04960 PF10415 Fumarase C C-terminus CCD90_RS04960 PF00206 Lyase CCD90_RS04970 PF01556 DnaJ C terminal domain CCD90_RS04970 PF00226 DnaJ domain CCD90_RS04970 PF00684 DnaJ central domain CCD90_RS04980 PF01042 Endoribonuclease L-PSP CCD90_RS04990 PF01171 PP-loop family CCD90_RS05000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCD90_RS05005 PF02492 CobW/HypB/UreG, nucleotide-binding domain CCD90_RS05005 PF07683 Cobalamin synthesis protein cobW C-terminal domain CCD90_RS05015 PF01451 Low molecular weight phosphotyrosine protein phosphatase CCD90_RS05020 PF02595 Glycerate kinase family CCD90_RS05030 PF13847 Methyltransferase domain CCD90_RS05030 PF10119 Predicted methyltransferase regulatory domain CCD90_RS05035 PF00403 Heavy-metal-associated domain CCD90_RS05050 PF03062 MBOAT, membrane-bound O-acyltransferase family CCD90_RS05070 PF00501 AMP-binding enzyme CCD90_RS05070 PF13193 AMP-binding enzyme C-terminal domain CCD90_RS05075 PF02028 BCCT, betaine/carnitine/choline family transporter CCD90_RS05090 PF13406 Transglycosylase SLT domain CCD90_RS05115 PF02261 Aspartate decarboxylase CCD90_RS05120 PF00793 DAHP synthetase I family CCD90_RS05130 PF03952 Enolase, N-terminal domain CCD90_RS05130 PF00113 Enolase, C-terminal TIM barrel domain CCD90_RS05135 PF04977 Septum formation initiator CCD90_RS05140 PF00111 2Fe-2S iron-sulfur cluster binding domain CCD90_RS05145 PF00268 Ribonucleotide reductase, small chain CCD90_RS05150 PF09217 Restriction endonuclease EcoRII, N-terminal CCD90_RS05150 PF09019 EcoRII C terminal CCD90_RS05155 PF00145 C-5 cytosine-specific DNA methylase CCD90_RS05155 PF01381 Helix-turn-helix CCD90_RS05160 PF03477 ATP cone domain CCD90_RS05160 PF02867 Ribonucleotide reductase, barrel domain CCD90_RS05160 PF00317 Ribonucleotide reductase, all-alpha domain CCD90_RS05175 PF01553 Acyltransferase CCD90_RS05190 PF01464 Transglycosylase SLT domain CCD90_RS05190 PF01476 LysM domain CCD90_RS05195 PF00849 RNA pseudouridylate synthase CCD90_RS05195 PF01479 S4 domain CCD90_RS05215 PF02224 Cytidylate kinase CCD90_RS05220 PF00575 S1 RNA binding domain CCD90_RS05225 PF00216 Bacterial DNA-binding protein CCD90_RS05235 PF13411 MerR HTH family regulatory protein CCD90_RS05240 PF00107 Zinc-binding dehydrogenase CCD90_RS05240 PF08240 Alcohol dehydrogenase GroES-like domain CCD90_RS05245 PF00756 Putative esterase CCD90_RS05250 PF03969 AFG1-like ATPase CCD90_RS05255 PF00334 Nucleoside diphosphate kinase CCD90_RS05260 PF04055 Radical SAM superfamily CCD90_RS05270 PF04551 GcpE protein CCD90_RS05275 PF00574 Clp protease CCD90_RS05280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCD90_RS05280 PF05698 Bacterial trigger factor protein (TF) C-terminus CCD90_RS05280 PF05697 Bacterial trigger factor protein (TF) CCD90_RS05285 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CCD90_RS05285 PF09397 Ftsk gamma domain CCD90_RS05285 PF01580 FtsK/SpoIIIE family CCD90_RS05285 PF17854 FtsK alpha domain CCD90_RS05290 PF00860 Permease family CCD90_RS05310 PF01066 CDP-alcohol phosphatidyltransferase CCD90_RS05315 PF01925 Sulfite exporter TauE/SafE CCD90_RS05325 PF03948 Ribosomal protein L9, C-terminal domain CCD90_RS05325 PF01281 Ribosomal protein L9, N-terminal domain CCD90_RS05330 PF01084 Ribosomal protein S18 CCD90_RS05340 PF01250 Ribosomal protein S6 CCD90_RS05345 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCD90_RS05350 PF00403 Heavy-metal-associated domain CCD90_RS05355 PF02151 UvrB/uvrC motif CCD90_RS05355 PF08459 UvrC Helix-hairpin-helix N-terminal CCD90_RS05355 PF01541 GIY-YIG catalytic domain CCD90_RS05360 PF08238 Sel1 repeat CCD90_RS05365 PF02390 Putative methyltransferase CCD90_RS05385 PF17757 UvrB interaction domain CCD90_RS05385 PF12344 Ultra-violet resistance protein B CCD90_RS05385 PF02151 UvrB/uvrC motif CCD90_RS05385 PF04851 Type III restriction enzyme, res subunit CCD90_RS05385 PF00271 Helicase conserved C-terminal domain CCD90_RS05390 PF03572 Peptidase family S41 CCD90_RS05390 PF13180 PDZ domain CCD90_RS05395 PF01551 Peptidase family M23 CCD90_RS05400 PF05981 CreA protein CCD90_RS05405 PF02622 Uncharacterized ACR, COG1678 CCD90_RS05410 PF03652 Holliday junction resolvase CCD90_RS05415 PF01557 Fumarylacetoacetate (FAA) hydrolase family CCD90_RS05420 PF03129 Anticodon binding domain CCD90_RS05420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCD90_RS05420 PF04073 Aminoacyl-tRNA editing domain CCD90_RS05425 PF00456 Transketolase, thiamine diphosphate binding domain CCD90_RS05425 PF17831 Pyruvate dehydrogenase E1 component middle domain CCD90_RS05430 PF02817 e3 binding domain CCD90_RS05430 PF00364 Biotin-requiring enzyme CCD90_RS05430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CCD90_RS05435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCD90_RS05435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCD90_RS05450 PF00459 Inositol monophosphatase family CCD90_RS05460 PF00588 SpoU rRNA Methylase family CCD90_RS05475 PF01029 NusB family CCD90_RS05475 PF01189 16S rRNA methyltransferase RsmB/F CCD90_RS05485 PF00171 Aldehyde dehydrogenase family CCD90_RS05490 PF01914 MarC family integral membrane protein CCD90_RS05495 PF02686 Glu-tRNAGln amidotransferase C subunit CCD90_RS05500 PF01425 Amidase CCD90_RS05505 PF04393 Protein of unknown function (DUF535) CCD90_RS05510 PF02637 GatB domain CCD90_RS05510 PF02934 GatB/GatE catalytic domain CCD90_RS05515 PF00175 Oxidoreductase NAD-binding domain CCD90_RS05515 PF00111 2Fe-2S iron-sulfur cluster binding domain CCD90_RS05515 PF00970 Oxidoreductase FAD-binding domain CCD90_RS05520 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CCD90_RS05520 PF01243 Pyridoxamine 5'-phosphate oxidase CCD90_RS05525 PF01479 S4 domain CCD90_RS05525 PF00849 RNA pseudouridylate synthase CCD90_RS05535 PF02601 Exonuclease VII, large subunit CCD90_RS05535 PF13742 OB-fold nucleic acid binding domain CCD90_RS05545 PF02540 NAD synthase CCD90_RS05550 PF01814 Hemerythrin HHE cation binding domain CCD90_RS05560 PF00085 Thioredoxin CCD90_RS05565 PF10672 S-adenosylmethionine-dependent methyltransferase CCD90_RS05570 PF00271 Helicase conserved C-terminal domain CCD90_RS05570 PF00270 DEAD/DEAH box helicase CCD90_RS05600 PF00202 Aminotransferase class-III CCD90_RS05605 PF07724 AAA domain (Cdc48 subfamily) CCD90_RS05605 PF10431 C-terminal, D2-small domain, of ClpB protein CCD90_RS05605 PF06689 ClpX C4-type zinc finger CCD90_RS05610 PF02033 Ribosome-binding factor A CCD90_RS05615 PF01509 TruB family pseudouridylate synthase (N terminal domain) CCD90_RS05615 PF16198 tRNA pseudouridylate synthase B C-terminal domain CCD90_RS05615 PF09157 Pseudouridine synthase II TruB, C-terminal CCD90_RS05625 PF04851 Type III restriction enzyme, res subunit CCD90_RS05630 PF01070 FMN-dependent dehydrogenase CCD90_RS05635 PF02082 Transcriptional regulator CCD90_RS05640 PF00266 Aminotransferase class-V CCD90_RS05645 PF01592 NifU-like N terminal domain CCD90_RS05650 PF01521 Iron-sulphur cluster biosynthesis CCD90_RS05655 PF03889 Alternative ribosome-rescue factor A CCD90_RS05660 PF07743 HSCB C-terminal oligomerisation domain CCD90_RS05660 PF00226 DnaJ domain CCD90_RS05665 PF03989 DNA gyrase C-terminal domain, beta-propeller CCD90_RS05665 PF00521 DNA gyrase/topoisomerase IV, subunit A CCD90_RS05695 PF00342 Phosphoglucose isomerase CCD90_RS05700 PF01418 Helix-turn-helix domain, rpiR family CCD90_RS05700 PF01380 SIS domain CCD90_RS05705 PF02685 Glucokinase CCD90_RS05710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CCD90_RS05715 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CCD90_RS05715 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CCD90_RS05725 PF00920 Dehydratase family CCD90_RS05730 PF01081 KDPG and KHG aldolase CCD90_RS05745 PF00633 Helix-hairpin-helix motif CCD90_RS05745 PF10576 Iron-sulfur binding domain of endonuclease III CCD90_RS05745 PF14815 NUDIX domain CCD90_RS05745 PF00730 HhH-GPD superfamily base excision DNA repair protein CCD90_RS05750 PF00080 Copper/zinc superoxide dismutase (SODC) CCD90_RS05760 PF01609 Transposase DDE domain CCD90_RS05790 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS05790 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS05795 PF11940 Domain of unknown function (DUF3458) Ig-like fold CCD90_RS05795 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CCD90_RS05795 PF01433 Peptidase family M1 domain CCD90_RS05810 PF02075 Crossover junction endodeoxyribonuclease RuvC CCD90_RS05815 PF02954 Bacterial regulatory protein, Fis family CCD90_RS05820 PF01207 Dihydrouridine synthase (Dus) CCD90_RS05830 PF00270 DEAD/DEAH box helicase CCD90_RS05830 PF00271 Helicase conserved C-terminal domain CCD90_RS05835 PF04820 Tryptophan halogenase CCD90_RS05845 PF13784 Fic/DOC family N-terminal CCD90_RS05845 PF02661 Fic/DOC family CCD90_RS05855 PF00152 tRNA synthetases class II (D, K and N) CCD90_RS05855 PF01336 OB-fold nucleic acid binding domain CCD90_RS05870 PF00557 Metallopeptidase family M24 CCD90_RS05870 PF01321 Creatinase/Prolidase N-terminal domain CCD90_RS05890 PF00267 Gram-negative porin CCD90_RS05900 PF01272 Transcription elongation factor, GreA/GreB, C-term CCD90_RS05900 PF03449 Transcription elongation factor, N-terminal CCD90_RS05910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CCD90_RS05915 PF00877 NlpC/P60 family CCD90_RS05925 PF13091 PLD-like domain CCD90_RS05930 PF07690 Major Facilitator Superfamily CCD90_RS05935 PF02754 Cysteine-rich domain CCD90_RS05940 PF02589 LUD domain CCD90_RS05945 PF02589 LUD domain CCD90_RS05945 PF11870 Domain of unknown function (DUF3390) CCD90_RS05945 PF13183 4Fe-4S dicluster domain CCD90_RS05950 PF00731 AIR carboxylase CCD90_RS05970 PF08676 MutL C terminal dimerisation domain CCD90_RS05970 PF01119 DNA mismatch repair protein, C-terminal domain CCD90_RS05975 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CCD90_RS05975 PF12169 DNA polymerase III subunits gamma and tau domain III CCD90_RS05975 PF12170 DNA polymerase III tau subunit V interacting with alpha CCD90_RS05980 PF02575 YbaB/EbfC DNA-binding family CCD90_RS06025 PF00154 recA bacterial DNA recombination protein CCD90_RS06035 PF01487 Type I 3-dehydroquinase CCD90_RS06040 PF13361 UvrD-like helicase C-terminal domain CCD90_RS06040 PF00580 UvrD/REP helicase N-terminal domain CCD90_RS06045 PF00817 impB/mucB/samB family CCD90_RS06045 PF11799 impB/mucB/samB family C-terminal domain CCD90_RS06045 PF11798 IMS family HHH motif CCD90_RS06050 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS06050 PF00593 TonB dependent receptor CCD90_RS06050 PF07660 Secretin and TonB N terminus short domain CCD90_RS06060 PF00175 Oxidoreductase NAD-binding domain CCD90_RS06060 PF00970 Oxidoreductase FAD-binding domain CCD90_RS06065 PF00929 Exonuclease CCD90_RS06080 PF03060 Nitronate monooxygenase CCD90_RS06090 PF13746 4Fe-4S dicluster domain CCD90_RS06090 PF12801 4Fe-4S binding domain CCD90_RS06090 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CCD90_RS06105 PF02780 Transketolase, C-terminal domain CCD90_RS06105 PF00456 Transketolase, thiamine diphosphate binding domain CCD90_RS06105 PF02779 Transketolase, pyrimidine binding domain CCD90_RS06110 PF10415 Fumarase C C-terminus CCD90_RS06110 PF00206 Lyase CCD90_RS06115 PF00892 EamA-like transporter family CCD90_RS06120 PF00436 Single-strand binding protein family CCD90_RS06125 PF07690 Major Facilitator Superfamily CCD90_RS06130 PF01551 Peptidase family M23 CCD90_RS06130 PF10145 Phage-related minor tail protein CCD90_RS06130 PF01464 Transglycosylase SLT domain CCD90_RS06180 PF04575 Protein of unknown function (DUF560) CCD90_RS06185 PF02541 Ppx/GppA phosphatase family CCD90_RS06210 PF00579 tRNA synthetases class I (W and Y) CCD90_RS06215 PF10431 C-terminal, D2-small domain, of ClpB protein CCD90_RS06215 PF02861 Clp amino terminal domain, pathogenicity island component CCD90_RS06215 PF17871 AAA lid domain CCD90_RS06215 PF07724 AAA domain (Cdc48 subfamily) CCD90_RS06215 PF00004 ATPase family associated with various cellular activities (AAA) CCD90_RS06220 PF00155 Aminotransferase class I and II CCD90_RS06225 PF01361 Tautomerase enzyme CCD90_RS06235 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CCD90_RS06235 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CCD90_RS06250 PF02631 RecX family CCD90_RS06265 PF03061 Thioesterase superfamily CCD90_RS06270 PF01551 Peptidase family M23 CCD90_RS06270 PF01476 LysM domain CCD90_RS06280 PF01975 Survival protein SurE CCD90_RS06285 PF03741 Integral membrane protein TerC family CCD90_RS06285 PF03471 Transporter associated domain CCD90_RS06285 PF00571 CBS domain CCD90_RS06300 PF00171 Aldehyde dehydrogenase family CCD90_RS06325 PF02554 Carbon starvation protein CstA CCD90_RS06325 PF13722 5TM C-terminal transporter carbon starvation CstA CCD90_RS06345 PF00849 RNA pseudouridylate synthase CCD90_RS06350 PF00593 TonB dependent receptor CCD90_RS06350 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS06370 PF00696 Amino acid kinase family CCD90_RS06370 PF01842 ACT domain CCD90_RS06370 PF13840 ACT domain CCD90_RS06380 PF01138 3' exoribonuclease family, domain 1 CCD90_RS06380 PF03725 3' exoribonuclease family, domain 2 CCD90_RS06385 PF00582 Universal stress protein family CCD90_RS06395 PF00899 ThiF family CCD90_RS06410 PF02616 Segregation and condensation protein ScpA CCD90_RS06415 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CCD90_RS06415 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CCD90_RS06420 PF05746 DALR anticodon binding domain CCD90_RS06420 PF03485 Arginyl tRNA synthetase N terminal domain CCD90_RS06420 PF00750 tRNA synthetases class I (R) CCD90_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS06455 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CCD90_RS06460 PF02542 YgbB family CCD90_RS06465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CCD90_RS06470 PF00929 Exonuclease CCD90_RS06475 PF07690 Major Facilitator Superfamily CCD90_RS06490 PF00871 Acetokinase family CCD90_RS06495 PF11412 Disulphide bond corrector protein DsbC CCD90_RS06495 PF02683 Cytochrome C biogenesis protein transmembrane region CCD90_RS06495 PF00085 Thioredoxin CCD90_RS06510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCD90_RS06520 PF02913 FAD linked oxidases, C-terminal domain CCD90_RS06520 PF01565 FAD binding domain CCD90_RS06525 PF03797 Autotransporter beta-domain CCD90_RS06545 PF01668 SmpB protein CCD90_RS06550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CCD90_RS06560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CCD90_RS06560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CCD90_RS06575 PF07687 Peptidase dimerisation domain CCD90_RS06575 PF01546 Peptidase family M20/M25/M40 CCD90_RS06580 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) CCD90_RS06585 PF01814 Hemerythrin HHE cation binding domain CCD90_RS06590 PF00127 Copper binding proteins, plastocyanin/azurin family CCD90_RS06610 PF01807 CHC2 zinc finger CCD90_RS06610 PF08278 DNA primase DnaG DnaB-binding CCD90_RS06610 PF10410 DnaB-helicase binding domain of primase CCD90_RS06610 PF08275 DNA primase catalytic core, N-terminal domain CCD90_RS06615 PF04546 Sigma-70, non-essential region CCD90_RS06615 PF00140 Sigma-70 factor, region 1.2 CCD90_RS06615 PF04542 Sigma-70 region 2 CCD90_RS06615 PF04539 Sigma-70 region 3 CCD90_RS06615 PF03979 Sigma-70 factor, region 1.1 CCD90_RS06615 PF04545 Sigma-70, region 4 CCD90_RS06630 PF00593 TonB dependent receptor CCD90_RS06630 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS06635 PF17484 N-Lobe handle Tf-binding protein B CCD90_RS06635 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CCD90_RS06635 PF17483 C-lobe handle domain of Tf-binding protein B CCD90_RS06645 PF00117 Glutamine amidotransferase class-I CCD90_RS06645 PF06418 CTP synthase N-terminus CCD90_RS06650 PF00501 AMP-binding enzyme CCD90_RS06650 PF13193 AMP-binding enzyme C-terminal domain CCD90_RS06665 PF01219 Prokaryotic diacylglycerol kinase CCD90_RS06675 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CCD90_RS06675 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CCD90_RS06680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CCD90_RS06680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CCD90_RS06685 PF08220 DeoR-like helix-turn-helix domain CCD90_RS06685 PF00455 DeoR C terminal sensor domain CCD90_RS06690 PF03956 Lysine exporter LysO CCD90_RS06695 PF07729 FCD domain CCD90_RS06695 PF00392 Bacterial regulatory proteins, gntR family CCD90_RS06705 PF02566 OsmC-like protein CCD90_RS06715 PF00551 Formyl transferase CCD90_RS06720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CCD90_RS06720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCD90_RS06730 PF00883 Cytosol aminopeptidase family, catalytic domain CCD90_RS06745 PF01609 Transposase DDE domain CCD90_RS06750 PF11791 Aconitate B N-terminal domain CCD90_RS06750 PF06434 Aconitate hydratase 2 N-terminus CCD90_RS06750 PF00330 Aconitase family (aconitate hydratase) CCD90_RS06755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CCD90_RS06755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CCD90_RS06765 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CCD90_RS06765 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CCD90_RS06775 PF10369 Small subunit of acetolactate synthase CCD90_RS06780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CCD90_RS06780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CCD90_RS06780 PF00205 Thiamine pyrophosphate enzyme, central domain CCD90_RS06790 PF02630 SCO1/SenC CCD90_RS06795 PF01634 ATP phosphoribosyltransferase CCD90_RS06805 PF00815 Histidinol dehydrogenase CCD90_RS06810 PF00155 Aminotransferase class I and II CCD90_RS06815 PF00475 Imidazoleglycerol-phosphate dehydratase CCD90_RS06820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CCD90_RS06820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CCD90_RS06830 PF01609 Transposase DDE domain CCD90_RS06850 PF08496 Peptidase family S49 N-terminal CCD90_RS06850 PF01343 Peptidase family S49 CCD90_RS06885 PF01066 CDP-alcohol phosphatidyltransferase CCD90_RS06895 PF02627 Carboxymuconolactone decarboxylase family CCD90_RS06900 PF12833 Helix-turn-helix domain CCD90_RS06900 PF12852 Cupin CCD90_RS06910 PF00892 EamA-like transporter family CCD90_RS06915 PF13416 Bacterial extracellular solute-binding protein CCD90_RS06920 PF02272 DHHA1 domain CCD90_RS06920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CCD90_RS06920 PF01411 tRNA synthetases class II (A) CCD90_RS06940 PF00300 Histidine phosphatase superfamily (branch 1) CCD90_RS06945 PF00521 DNA gyrase/topoisomerase IV, subunit A CCD90_RS06955 PF00072 Response regulator receiver domain CCD90_RS06955 PF02954 Bacterial regulatory protein, Fis family CCD90_RS06955 PF00072 Response regulator receiver domain CCD90_RS06955 PF00158 Sigma-54 interaction domain CCD90_RS06955 PF02954 Bacterial regulatory protein, Fis family CCD90_RS06955 PF00158 Sigma-54 interaction domain CCD90_RS06960 PF04445 Putative SAM-dependent methyltransferase CCD90_RS06970 PF01548 Transposase CCD90_RS06970 PF02371 Transposase IS116/IS110/IS902 family CCD90_RS07035 PF01053 Cys/Met metabolism PLP-dependent enzyme CCD90_RS07050 PF00497 Bacterial extracellular solute-binding proteins, family 3 CCD90_RS07055 PF05683 Fumarase C-terminus CCD90_RS07055 PF05681 Fumarate hydratase (Fumerase) CCD90_RS07060 PF02080 TrkA-C domain CCD90_RS07060 PF02254 TrkA-N domain CCD90_RS07095 PF08543 Phosphomethylpyrimidine kinase CCD90_RS07100 PF03848 Tellurite resistance protein TehB CCD90_RS07100 PF09313 Domain of unknown function (DUF1971) CCD90_RS07105 PF00075 RNase H CCD90_RS07130 PF02016 LD-carboxypeptidase N-terminal domain CCD90_RS07130 PF17676 LD-carboxypeptidase C-terminal domain CCD90_RS07135 PF00255 Glutathione peroxidase CCD90_RS07140 PF00115 Cytochrome C and Quinol oxidase polypeptide I CCD90_RS07150 PF03781 Sulfatase-modifying factor enzyme 1 CCD90_RS07160 PF02462 Opacity family porin protein CCD90_RS07170 PF00881 Nitroreductase family CCD90_RS07175 PF08019 Phosphoethanolamine transferase EptA/EptB CCD90_RS07175 PF00884 Sulfatase CCD90_RS07185 PF00266 Aminotransferase class-V CCD90_RS07190 PF02576 RimP N-terminal domain CCD90_RS07190 PF17384 RimP C-terminal SH3 domain CCD90_RS07195 PF13184 NusA-like KH domain CCD90_RS07195 PF08529 NusA N-terminal domain CCD90_RS07200 PF04760 Translation initiation factor IF-2, N-terminal region CCD90_RS07200 PF11987 Translation-initiation factor 2 CCD90_RS07200 PF00009 Elongation factor Tu GTP binding domain CCD90_RS07205 PF01926 50S ribosome-binding GTPase CCD90_RS07205 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CCD90_RS07210 PF11067 Protein of unknown function (DUF2868) CCD90_RS07215 PF03006 Haemolysin-III related CCD90_RS07220 PF01235 Sodium:alanine symporter family CCD90_RS07225 PF01709 Transcriptional regulator CCD90_RS07230 PF02600 Disulfide bond formation protein DsbB CCD90_RS07245 PF01037 Lrp/AsnC ligand binding domain CCD90_RS07250 PF00842 Alanine racemase, C-terminal domain CCD90_RS07250 PF01168 Alanine racemase, N-terminal domain CCD90_RS07255 PF05167 Uncharacterised ACR (DUF711) CCD90_RS07285 PF10531 SLBB domain CCD90_RS07320 PF04127 DNA / pantothenate metabolism flavoprotein CCD90_RS07320 PF02441 Flavoprotein CCD90_RS07325 PF02824 TGS domain CCD90_RS07325 PF13291 ACT domain CCD90_RS07325 PF04607 Region found in RelA / SpoT proteins CCD90_RS07330 PF01192 RNA polymerase Rpb6 CCD90_RS07335 PF00625 Guanylate kinase CCD90_RS07340 PF00156 Phosphoribosyl transferase domain CCD90_RS07360 PF01136 Peptidase family U32 CCD90_RS07360 PF16325 Peptidase family U32 C-terminal domain CCD90_RS07385 PF04403 Paraquat-inducible protein A CCD90_RS07390 PF02470 MlaD protein CCD90_RS07400 PF13673 Acetyltransferase (GNAT) domain CCD90_RS07400 PF13302 Acetyltransferase (GNAT) domain CCD90_RS07400 PF00117 Glutamine amidotransferase class-I CCD90_RS07400 PF03352 Methyladenine glycosylase CCD90_RS07400 PF00958 GMP synthase C terminal domain CCD90_RS07420 PF02347 Glycine cleavage system P-protein CCD90_RS07435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CCD90_RS07445 PF00155 Aminotransferase class I and II CCD90_RS07450 PF05958 tRNA (Uracil-5-)-methyltransferase CCD90_RS07455 PF01264 Chorismate synthase CCD90_RS07465 PF00986 DNA gyrase B subunit, carboxyl terminus CCD90_RS07465 PF00204 DNA gyrase B CCD90_RS07465 PF01751 Toprim domain CCD90_RS07465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS07470 PF00293 NUDIX domain CCD90_RS07475 PF02403 Seryl-tRNA synthetase N-terminal domain CCD90_RS07475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCD90_RS07480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CCD90_RS07480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCD90_RS07485 PF00472 RF-1 domain CCD90_RS07485 PF03462 PCRF domain CCD90_RS07495 PF17763 Glutaminase/Asparaginase C-terminal domain CCD90_RS07495 PF00710 Asparaginase, N-terminal CCD90_RS07500 PF09335 SNARE associated Golgi protein CCD90_RS07505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CCD90_RS07505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CCD90_RS07505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CCD90_RS07505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CCD90_RS07510 PF00809 Pterin binding enzyme CCD90_RS07515 PF18152 DAHP synthase ferredoxin-like domain CCD90_RS07515 PF00793 DAHP synthetase I family CCD90_RS07525 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CCD90_RS07550 PF00109 Beta-ketoacyl synthase, N-terminal domain CCD90_RS07550 PF02801 Beta-ketoacyl synthase, C-terminal domain CCD90_RS07560 PF00535 Glycosyl transferase family 2 CCD90_RS07575 PF00209 Sodium:neurotransmitter symporter family CCD90_RS07590 PF00303 Thymidylate synthase CCD90_RS07595 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CCD90_RS07595 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CCD90_RS07610 PF00392 Bacterial regulatory proteins, gntR family CCD90_RS07610 PF07729 FCD domain CCD90_RS07615 PF02652 L-lactate permease CCD90_RS07620 PF00593 TonB dependent receptor CCD90_RS07620 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS07625 PF02321 Outer membrane efflux protein CCD90_RS07630 PF00873 AcrB/AcrD/AcrF family CCD90_RS07635 PF00529 HlyD membrane-fusion protein of T1SS CCD90_RS07635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCD90_RS07640 PF00440 Bacterial regulatory proteins, tetR family CCD90_RS07640 PF08361 MAATS-type transcriptional repressor, C-terminal region CCD90_RS07650 PF03806 AbgT putative transporter family CCD90_RS07655 PF17946 RecC C-terminal domain CCD90_RS07670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CCD90_RS07670 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CCD90_RS07685 PF00115 Cytochrome C and Quinol oxidase polypeptide I CCD90_RS07695 PF04273 Putative phosphatase (DUF442) CCD90_RS07695 PF00753 Metallo-beta-lactamase superfamily CCD90_RS07700 PF02472 Biopolymer transport protein ExbD/TolR CCD90_RS07705 PF01618 MotA/TolQ/ExbB proton channel family CCD90_RS07710 PF03544 Gram-negative bacterial TonB protein C-terminal CCD90_RS07715 PF02163 Peptidase family M50 CCD90_RS07745 PF13417 Glutathione S-transferase, N-terminal domain CCD90_RS07745 PF04399 Glutaredoxin 2, C terminal domain CCD90_RS07750 PF02824 TGS domain CCD90_RS07750 PF04607 Region found in RelA / SpoT proteins CCD90_RS07750 PF13291 ACT domain CCD90_RS07760 PF02321 Outer membrane efflux protein CCD90_RS07845 PF08241 Methyltransferase domain CCD90_RS07850 PF04301 Protein of unknown function (DUF452) CCD90_RS07855 PF00155 Aminotransferase class I and II CCD90_RS07860 PF05958 tRNA (Uracil-5-)-methyltransferase CCD90_RS07865 PF03734 L,D-transpeptidase catalytic domain CCD90_RS07865 PF01476 LysM domain CCD90_RS07870 PF00939 Sodium:sulfate symporter transmembrane region CCD90_RS07875 PF00491 Arginase family CCD90_RS07880 PF17944 Arginine decarboxylase C-terminal helical extension CCD90_RS07880 PF17810 Arginine decarboxylase helical bundle domain CCD90_RS07880 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CCD90_RS07890 PF00152 tRNA synthetases class II (D, K and N) CCD90_RS07890 PF01336 OB-fold nucleic acid binding domain CCD90_RS07890 PF02938 GAD domain CCD90_RS07900 PF02253 Phospholipase A1 CCD90_RS07905 PF01649 Ribosomal protein S20 CCD90_RS07910 PF13416 Bacterial extracellular solute-binding protein CCD90_RS07915 PF00593 TonB dependent receptor CCD90_RS07915 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS07920 PF17484 N-Lobe handle Tf-binding protein B CCD90_RS07920 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CCD90_RS07920 PF17483 C-lobe handle domain of Tf-binding protein B CCD90_RS07940 PF13784 Fic/DOC family N-terminal CCD90_RS07940 PF02661 Fic/DOC family CCD90_RS07950 PF01177 Asp/Glu/Hydantoin racemase CCD90_RS07960 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CCD90_RS07965 PF11741 AMIN domain CCD90_RS07965 PF01520 N-acetylmuramoyl-L-alanine amidase CCD90_RS07975 PF02926 THUMP domain CCD90_RS07975 PF01170 Putative RNA methylase family UPF0020 CCD90_RS07985 PF00293 NUDIX domain CCD90_RS07990 PF01648 4'-phosphopantetheinyl transferase superfamily CCD90_RS08010 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CCD90_RS08015 PF11967 Recombination protein O N terminal CCD90_RS08015 PF02565 Recombination protein O C terminal CCD90_RS08020 PF01817 Chorismate mutase type II CCD90_RS08020 PF01842 ACT domain CCD90_RS08020 PF00800 Prephenate dehydratase CCD90_RS08025 PF07690 Major Facilitator Superfamily CCD90_RS08035 PF00892 EamA-like transporter family CCD90_RS08040 PF02462 Opacity family porin protein CCD90_RS08055 PF00795 Carbon-nitrogen hydrolase CCD90_RS08060 PF01842 ACT domain CCD90_RS08060 PF02153 Prephenate dehydrogenase CCD90_RS08080 PF02082 Transcriptional regulator CCD90_RS08085 PF01300 Telomere recombination CCD90_RS08090 PF00871 Acetokinase family CCD90_RS08095 PF04303 PrpF protein CCD90_RS08100 PF00330 Aconitase family (aconitate hydratase) CCD90_RS08100 PF00694 Aconitase C-terminal domain CCD90_RS08105 PF01925 Sulfite exporter TauE/SafE CCD90_RS08110 PF00285 Citrate synthase, C-terminal domain CCD90_RS08125 PF00860 Permease family CCD90_RS08135 PF12327 FtsZ family, C-terminal domain CCD90_RS08135 PF00091 Tubulin/FtsZ family, GTPase domain CCD90_RS08140 PF02491 SHS2 domain inserted in FTSA CCD90_RS08145 PF08478 POTRA domain, FtsQ-type CCD90_RS08145 PF03799 Cell division protein FtsQ CCD90_RS08150 PF07478 D-ala D-ala ligase C-terminus CCD90_RS08150 PF01820 D-ala D-ala ligase N-terminus CCD90_RS08155 PF01225 Mur ligase family, catalytic domain CCD90_RS08155 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS08155 PF08245 Mur ligase middle domain CCD90_RS08160 PF04101 Glycosyltransferase family 28 C-terminal domain CCD90_RS08160 PF03033 Glycosyltransferase family 28 N-terminal domain CCD90_RS08165 PF01098 Cell cycle protein CCD90_RS08175 PF08245 Mur ligase middle domain CCD90_RS08175 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS08185 PF00953 Glycosyl transferase family 4 CCD90_RS08195 PF01225 Mur ligase family, catalytic domain CCD90_RS08195 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS08195 PF08245 Mur ligase middle domain CCD90_RS08205 PF01225 Mur ligase family, catalytic domain CCD90_RS08205 PF02875 Mur ligase family, glutamate ligase domain CCD90_RS08205 PF08245 Mur ligase middle domain CCD90_RS08210 PF03717 Penicillin-binding Protein dimerisation domain CCD90_RS08210 PF00905 Penicillin binding protein transpeptidase domain CCD90_RS08215 PF04999 Cell division protein FtsL CCD90_RS08220 PF01795 MraW methylase family CCD90_RS08225 PF02381 MraZ protein, putative antitoxin-like CCD90_RS08245 PF02673 Bacitracin resistance protein BacA CCD90_RS08250 PF01323 DSBA-like thioredoxin domain CCD90_RS08260 PF01078 Magnesium chelatase, subunit ChlI CCD90_RS08260 PF13335 Magnesium chelatase, subunit ChlI C-terminal CCD90_RS08265 PF04380 Membrane fusogenic activity CCD90_RS08275 PF00474 Sodium:solute symporter family CCD90_RS08285 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CCD90_RS08285 PF00171 Aldehyde dehydrogenase family CCD90_RS08285 PF01619 Proline dehydrogenase CCD90_RS08285 PF14850 DNA-binding domain of Proline dehydrogenase CCD90_RS08310 PF03372 Endonuclease/Exonuclease/phosphatase family CCD90_RS08315 PF01022 Bacterial regulatory protein, arsR family CCD90_RS08325 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CCD90_RS08325 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CCD90_RS08335 PF02445 Quinolinate synthetase A protein CCD90_RS08340 PF00890 FAD binding domain CCD90_RS08345 PF13419 Haloacid dehalogenase-like hydrolase CCD90_RS08350 PF03632 Glycosyl hydrolase family 65 central catalytic domain CCD90_RS08350 PF03633 Glycosyl hydrolase family 65, C-terminal domain CCD90_RS08350 PF03636 Glycosyl hydrolase family 65, N-terminal domain CCD90_RS08355 PF01263 Aldose 1-epimerase CCD90_RS08365 PF00005 ABC transporter CCD90_RS08365 PF12848 ABC transporter CCD90_RS08370 PF04608 Phosphatidylglycerophosphatase A CCD90_RS08375 PF00586 AIR synthase related protein, N-terminal domain CCD90_RS08375 PF02769 AIR synthase related protein, C-terminal domain CCD90_RS08390 PF00691 OmpA family CCD90_RS08400 PF03466 LysR substrate binding domain CCD90_RS08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCD90_RS08405 PF13545 Crp-like helix-turn-helix domain CCD90_RS08405 PF00027 Cyclic nucleotide-binding domain CCD90_RS08410 PF04055 Radical SAM superfamily CCD90_RS08410 PF06969 HemN C-terminal domain CCD90_RS08420 PF01384 Phosphate transporter family CCD90_RS08430 PF03702 Anhydro-N-acetylmuramic acid kinase CCD90_RS08510 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCD90_RS08510 PF06594 Haemolysin-type calcium binding protein related domain CCD90_RS08525 PF01541 GIY-YIG catalytic domain CCD90_RS08530 PF07690 Major Facilitator Superfamily CCD90_RS08535 PF00120 Glutamine synthetase, catalytic domain CCD90_RS08535 PF03951 Glutamine synthetase, beta-Grasp domain CCD90_RS08545 PF08501 Shikimate dehydrogenase substrate binding domain CCD90_RS08545 PF01488 Shikimate / quinate 5-dehydrogenase CCD90_RS08545 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CCD90_RS08550 PF00912 Transglycosylase CCD90_RS08560 PF12399 Branched-chain amino acid ATP-binding cassette transporter CCD90_RS08560 PF00005 ABC transporter CCD90_RS08565 PF03968 OstA-like protein CCD90_RS08580 PF01380 SIS domain CCD90_RS08580 PF00571 CBS domain CCD90_RS08585 PF00923 Transaldolase/Fructose-6-phosphate aldolase CCD90_RS08595 PF00749 tRNA synthetases class I (E and Q), catalytic domain CCD90_RS08600 PF01207 Dihydrouridine synthase (Dus) CCD90_RS08605 PF02580 D-Tyr-tRNA(Tyr) deacylase CCD90_RS08625 PF03795 YCII-related domain CCD90_RS08630 PF04279 Intracellular septation protein A CCD90_RS08645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CCD90_RS08650 PF18073 Rubredoxin metal binding domain CCD90_RS08665 PF01063 Amino-transferase class IV CCD90_RS08675 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CCD90_RS08675 PF14602 Hexapeptide repeat of succinyl-transferase CCD90_RS08685 PF00342 Phosphoglucose isomerase CCD90_RS08690 PF00482 Type II secretion system (T2SS), protein F CCD90_RS08695 PF01478 Type IV leader peptidase family CCD90_RS08695 PF06750 Bacterial Peptidase A24 N-terminal domain CCD90_RS08700 PF01121 Dephospho-CoA kinase CCD90_RS08705 PF03884 DNA gyrase inhibitor YacG CCD90_RS08710 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CCD90_RS08710 PF00437 Type II/IV secretion system protein CCD90_RS08730 PF04284 Protein of unknown function (DUF441) CCD90_RS08735 PF00348 Polyprenyl synthetase CCD90_RS08745 PF00829 Ribosomal prokaryotic L21 protein CCD90_RS08750 PF01016 Ribosomal L27 protein CCD90_RS08755 PF01494 FAD binding domain CCD90_RS08765 PF00471 Ribosomal protein L33 CCD90_RS08770 PF00830 Ribosomal L28 family CCD90_RS08780 PF07690 Major Facilitator Superfamily CCD90_RS08785 PF13533 Biotin-lipoyl like CCD90_RS08795 PF14489 QueF-like protein CCD90_RS08800 PF02592 Putative vitamin uptake transporter CCD90_RS08805 PF01551 Peptidase family M23 CCD90_RS08805 PF08525 Opacity-associated protein A N-terminal motif CCD90_RS08805 PF01476 LysM domain CCD90_RS08815 PF04575 Protein of unknown function (DUF560) CCD90_RS08840 PF03653 Uncharacterised protein family (UPF0093) CCD90_RS08845 PF01928 CYTH domain CCD90_RS08850 PF00186 Dihydrofolate reductase CCD90_RS08855 PF00793 DAHP synthetase I family CCD90_RS08880 PF12762 ISXO2-like transposase domain CCD90_RS08890 PF10531 SLBB domain CCD90_RS08930 PF00448 SRP54-type protein, GTPase domain CCD90_RS08930 PF02881 SRP54-type protein, helical bundle domain CCD90_RS08930 PF02978 Signal peptide binding domain CCD90_RS08935 PF01323 DSBA-like thioredoxin domain CCD90_RS08935 PF00085 Thioredoxin CCD90_RS08955 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS08955 PF00593 TonB dependent receptor CCD90_RS08965 PF07681 DoxX CCD90_RS08975 PF03441 FAD binding domain of DNA photolyase CCD90_RS08975 PF00875 DNA photolyase CCD90_RS08985 PF06733 DEAD_2 CCD90_RS08985 PF13307 Helicase C-terminal domain CCD90_RS08995 PF01757 Acyltransferase family CCD90_RS09000 PF08328 Adenylosuccinate lyase C-terminal CCD90_RS09000 PF00206 Lyase CCD90_RS09005 PF03641 Possible lysine decarboxylase CCD90_RS09010 PF00773 RNB domain CCD90_RS09045 PF00639 PPIC-type PPIASE domain CCD90_RS09045 PF09312 SurA N-terminal domain CCD90_RS09050 PF04453 LPS transport system D CCD90_RS09055 PF01636 Phosphotransferase enzyme family CCD90_RS09060 PF00085 Thioredoxin CCD90_RS09060 PF01323 DSBA-like thioredoxin domain CCD90_RS09070 PF03023 Lipid II flippase MurJ CCD90_RS09080 PF00218 Indole-3-glycerol phosphate synthase CCD90_RS09085 PF00270 DEAD/DEAH box helicase CCD90_RS09085 PF00271 Helicase conserved C-terminal domain CCD90_RS09085 PF00570 HRDC domain CCD90_RS09085 PF16124 RecQ zinc-binding CCD90_RS09085 PF09382 RQC domain CCD90_RS09110 PF08241 Methyltransferase domain CCD90_RS09115 PF00561 alpha/beta hydrolase fold CCD90_RS09120 PF00156 Phosphoribosyl transferase domain CCD90_RS09125 PF00588 SpoU rRNA Methylase family CCD90_RS09135 PF05036 Sporulation related domain CCD90_RS09135 PF03330 Lytic transglycolase CCD90_RS09145 PF01330 RuvA N terminal domain CCD90_RS09145 PF07499 RuvA, C-terminal domain CCD90_RS09155 PF00664 ABC transporter transmembrane region CCD90_RS09155 PF00005 ABC transporter CCD90_RS09160 PF03193 RsgA GTPase CCD90_RS09170 PF02609 Exonuclease VII small subunit CCD90_RS09175 PF00348 Polyprenyl synthetase CCD90_RS09185 PF00361 Proton-conducting membrane transporter CCD90_RS09190 PF00361 Proton-conducting membrane transporter CCD90_RS09190 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CCD90_RS09200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CCD90_RS09200 PF00361 Proton-conducting membrane transporter CCD90_RS09210 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CCD90_RS09215 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CCD90_RS09220 PF12838 4Fe-4S dicluster domain CCD90_RS09225 PF00146 NADH dehydrogenase CCD90_RS09230 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CCD90_RS09230 PF00384 Molybdopterin oxidoreductase CCD90_RS09230 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CCD90_RS09240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CCD90_RS09240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CCD90_RS09240 PF10531 SLBB domain CCD90_RS09250 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CCD90_RS09255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CCD90_RS09260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CCD90_RS09265 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CCD90_RS09275 PF17284 Spermidine synthase tetramerisation domain CCD90_RS09285 PF12762 ISXO2-like transposase domain CCD90_RS09310 PF00580 UvrD/REP helicase N-terminal domain CCD90_RS09310 PF13361 UvrD-like helicase C-terminal domain CCD90_RS09320 PF02682 Carboxyltransferase domain, subdomain C and D CCD90_RS09325 PF02626 Carboxyltransferase domain, subdomain A and B CCD90_RS09330 PF03746 LamB/YcsF family CCD90_RS09335 PF01566 Natural resistance-associated macrophage protein CCD90_RS09350 PF03710 Glutamate-ammonia ligase adenylyltransferase CCD90_RS09350 PF08335 GlnD PII-uridylyltransferase CCD90_RS09380 PF01180 Dihydroorotate dehydrogenase CCD90_RS09385 PF00550 Phosphopantetheine attachment site CCD90_RS09390 PF00109 Beta-ketoacyl synthase, N-terminal domain CCD90_RS09390 PF02801 Beta-ketoacyl synthase, C-terminal domain CCD90_RS09395 PF01758 Sodium Bile acid symporter family CCD90_RS09415 PF00309 Sigma-54 factor, Activator interacting domain (AID) CCD90_RS09415 PF04552 Sigma-54, DNA binding domain CCD90_RS09415 PF04963 Sigma-54 factor, core binding domain CCD90_RS09420 PF00199 Catalase CCD90_RS09420 PF06628 Catalase-related immune-responsive CCD90_RS09440 PF02659 Putative manganese efflux pump CCD90_RS09450 PF01432 Peptidase family M3 CCD90_RS09465 PF01751 Toprim domain CCD90_RS09465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS09465 PF00204 DNA gyrase B CCD90_RS09465 PF00986 DNA gyrase B subunit, carboxyl terminus CCD90_RS09465 PF18053 DNA gyrase B subunit insert domain CCD90_RS09470 PF03313 Serine dehydratase alpha chain CCD90_RS09470 PF03315 Serine dehydratase beta chain CCD90_RS09505 PF02080 TrkA-C domain CCD90_RS09505 PF00999 Sodium/hydrogen exchanger family CCD90_RS09505 PF02254 TrkA-N domain CCD90_RS09510 PF04060 Putative Fe-S cluster CCD90_RS09515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CCD90_RS09515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CCD90_RS09520 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CCD90_RS09525 PF01475 Ferric uptake regulator family CCD90_RS09530 PF04355 SmpA / OmlA family CCD90_RS09535 PF05173 Dihydrodipicolinate reductase, C-terminus CCD90_RS09535 PF01113 Dihydrodipicolinate reductase, N-terminus CCD90_RS09555 PF02684 Lipid-A-disaccharide synthetase CCD90_RS09560 PF00849 RNA pseudouridylate synthase CCD90_RS09560 PF01479 S4 domain CCD90_RS09570 PF12111 Polyribonucleotide phosphorylase C terminal CCD90_RS09570 PF10150 Ribonuclease E/G family CCD90_RS09570 PF00575 S1 RNA binding domain CCD90_RS09575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CCD90_RS09580 PF01235 Sodium:alanine symporter family CCD90_RS09590 PF13932 GidA associated domain CCD90_RS09590 PF01134 Glucose inhibited division protein A CCD90_RS09595 PF01351 Ribonuclease HII CCD90_RS09605 PF13614 AAA domain CCD90_RS09610 PF02527 rRNA small subunit methyltransferase G CCD90_RS09635 PF01765 Ribosome recycling factor CCD90_RS09640 PF01255 Putative undecaprenyl diphosphate synthase CCD90_RS09650 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CCD90_RS09650 PF13288 DXP reductoisomerase C-terminal domain CCD90_RS09650 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CCD90_RS09655 PF17820 PDZ domain CCD90_RS09655 PF02163 Peptidase family M50 CCD90_RS09660 PF07244 Surface antigen variable number repeat CCD90_RS09660 PF01103 Surface antigen CCD90_RS09670 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CCD90_RS09670 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS09675 PF07977 FabA-like domain CCD90_RS09685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CCD90_RS09685 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS09690 PF01235 Sodium:alanine symporter family CCD90_RS09695 PF01266 FAD dependent oxidoreductase CCD90_RS09700 PF02535 ZIP Zinc transporter CCD90_RS09705 PF00133 tRNA synthetases class I (I, L, M and V) CCD90_RS09705 PF08264 Anticodon-binding domain of tRNA CCD90_RS09705 PF10458 Valyl tRNA synthetase tRNA binding arm CCD90_RS09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCD90_RS09715 PF03466 LysR substrate binding domain CCD90_RS09720 PF03776 Septum formation topological specificity factor MinE CCD90_RS09725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CCD90_RS09735 PF01196 Ribosomal protein L17 CCD90_RS09740 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CCD90_RS09740 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CCD90_RS09740 PF01000 RNA polymerase Rpb3/RpoA insert domain CCD90_RS09745 PF01479 S4 domain CCD90_RS09745 PF00163 Ribosomal protein S4/S9 N-terminal domain CCD90_RS09750 PF00411 Ribosomal protein S11 CCD90_RS09755 PF00416 Ribosomal protein S13/S18 CCD90_RS09760 PF00444 Ribosomal protein L36 CCD90_RS09765 PF01176 Translation initiation factor 1A / IF-1 CCD90_RS09770 PF00344 SecY translocase CCD90_RS09775 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CCD90_RS09780 PF00327 Ribosomal protein L30p/L7e CCD90_RS09785 PF03719 Ribosomal protein S5, C-terminal domain CCD90_RS09785 PF00333 Ribosomal protein S5, N-terminal domain CCD90_RS09790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CCD90_RS09795 PF00347 Ribosomal protein L6 CCD90_RS09800 PF00410 Ribosomal protein S8 CCD90_RS09805 PF00253 Ribosomal protein S14p/S29e CCD90_RS09810 PF00673 ribosomal L5P family C-terminus CCD90_RS09810 PF00281 Ribosomal protein L5 CCD90_RS09815 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CCD90_RS09815 PF00467 KOW motif CCD90_RS09820 PF00238 Ribosomal protein L14p/L23e CCD90_RS09825 PF00366 Ribosomal protein S17 CCD90_RS09830 PF00831 Ribosomal L29 protein CCD90_RS09835 PF00252 Ribosomal protein L16p/L10e CCD90_RS09840 PF00189 Ribosomal protein S3, C-terminal domain CCD90_RS09840 PF07650 KH domain CCD90_RS09845 PF00237 Ribosomal protein L22p/L17e CCD90_RS09850 PF00203 Ribosomal protein S19 CCD90_RS09855 PF03947 Ribosomal Proteins L2, C-terminal domain CCD90_RS09855 PF00181 Ribosomal Proteins L2, RNA binding domain CCD90_RS09860 PF00276 Ribosomal protein L23 CCD90_RS09865 PF00573 Ribosomal protein L4/L1 family CCD90_RS09870 PF00297 Ribosomal protein L3 CCD90_RS09880 PF00338 Ribosomal protein S10p/S20e CCD90_RS09885 PF03144 Elongation factor Tu domain 2 CCD90_RS09885 PF03143 Elongation factor Tu C-terminal domain CCD90_RS09885 PF00009 Elongation factor Tu GTP binding domain CCD90_RS09890 PF00679 Elongation factor G C-terminus CCD90_RS09890 PF14492 Elongation Factor G, domain II CCD90_RS09890 PF03764 Elongation factor G, domain IV CCD90_RS09890 PF00009 Elongation factor Tu GTP binding domain CCD90_RS09890 PF03144 Elongation factor Tu domain 2 CCD90_RS09895 PF00177 Ribosomal protein S7p/S5e CCD90_RS09900 PF00164 Ribosomal protein S12/S23 CCD90_RS09915 PF04998 RNA polymerase Rpb1, domain 5 CCD90_RS09915 PF05000 RNA polymerase Rpb1, domain 4 CCD90_RS09915 PF04983 RNA polymerase Rpb1, domain 3 CCD90_RS09915 PF00623 RNA polymerase Rpb1, domain 2 CCD90_RS09915 PF04997 RNA polymerase Rpb1, domain 1 CCD90_RS09920 PF10385 RNA polymerase beta subunit external 1 domain CCD90_RS09920 PF04565 RNA polymerase Rpb2, domain 3 CCD90_RS09920 PF00562 RNA polymerase Rpb2, domain 6 CCD90_RS09920 PF04560 RNA polymerase Rpb2, domain 7 CCD90_RS09920 PF04561 RNA polymerase Rpb2, domain 2 CCD90_RS09920 PF04563 RNA polymerase beta subunit CCD90_RS09925 PF16320 Ribosomal protein L7/L12 dimerisation domain CCD90_RS09925 PF00542 Ribosomal protein L7/L12 C-terminal domain CCD90_RS09930 PF00466 Ribosomal protein L10 CCD90_RS09940 PF00687 Ribosomal protein L1p/L10e family CCD90_RS09945 PF00298 Ribosomal protein L11, RNA binding domain CCD90_RS09945 PF03946 Ribosomal protein L11, N-terminal domain CCD90_RS09950 PF02357 Transcription termination factor nusG CCD90_RS09950 PF00467 KOW motif CCD90_RS09955 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CCD90_RS09965 PF00009 Elongation factor Tu GTP binding domain CCD90_RS09965 PF03143 Elongation factor Tu C-terminal domain CCD90_RS09965 PF03144 Elongation factor Tu domain 2 CCD90_RS09985 PF00037 4Fe-4S binding domain CCD90_RS10010 PF13368 Topoisomerase C-terminal repeat CCD90_RS10010 PF01131 DNA topoisomerase CCD90_RS10010 PF01751 Toprim domain CCD90_RS10015 PF04361 Protein of unknown function (DUF494) CCD90_RS10020 PF17782 DprA winged helix domain CCD90_RS10020 PF02481 DNA recombination-mediator protein A CCD90_RS10025 PF02954 Bacterial regulatory protein, Fis family CCD90_RS10025 PF00072 Response regulator receiver domain CCD90_RS10025 PF00158 Sigma-54 interaction domain CCD90_RS10030 PF00989 PAS fold CCD90_RS10030 PF00512 His Kinase A (phospho-acceptor) domain CCD90_RS10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCD90_RS10030 PF00672 HAMP domain CCD90_RS10040 PF01189 16S rRNA methyltransferase RsmB/F CCD90_RS10040 PF01029 NusB family CCD90_RS10045 PF02911 Formyl transferase, C-terminal domain CCD90_RS10045 PF00551 Formyl transferase CCD90_RS10050 PF01327 Polypeptide deformylase CCD90_RS10055 PF01476 LysM domain CCD90_RS10065 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CCD90_RS10065 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CCD90_RS10070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CCD90_RS10070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CCD90_RS10105 PF00224 Pyruvate kinase, barrel domain CCD90_RS10105 PF02887 Pyruvate kinase, alpha/beta domain CCD90_RS10110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CCD90_RS10135 PF03616 Sodium/glutamate symporter CCD90_RS10140 PF08238 Sel1 repeat CCD90_RS10145 PF05159 Capsule polysaccharide biosynthesis protein CCD90_RS10150 PF05159 Capsule polysaccharide biosynthesis protein CCD90_RS10155 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CCD90_RS10160 PF00483 Nucleotidyl transferase CCD90_RS10165 PF16363 GDP-mannose 4,6 dehydratase CCD90_RS10170 PF16363 GDP-mannose 4,6 dehydratase CCD90_RS10190 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS10200 PF08666 SAF domain CCD90_RS10200 PF03102 NeuB family CCD90_RS10205 PF02348 Cytidylyltransferase CCD90_RS10210 PF02350 UDP-N-acetylglucosamine 2-epimerase CCD90_RS10215 PF02563 Polysaccharide biosynthesis/export protein CCD90_RS10225 PF01061 ABC-2 type transporter CCD90_RS10230 PF00005 ABC transporter CCD90_RS10235 PF00575 S1 RNA binding domain CCD90_RS10235 PF09371 Tex-like protein N-terminal domain CCD90_RS10235 PF16921 Tex protein YqgF-like domain CCD90_RS10235 PF17674 HHH domain CCD90_RS10245 PF02086 D12 class N6 adenine-specific DNA methyltransferase CCD90_RS10250 PF16363 GDP-mannose 4,6 dehydratase CCD90_RS10255 PF16363 GDP-mannose 4,6 dehydratase CCD90_RS10260 PF00483 Nucleotidyl transferase CCD90_RS10265 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CCD90_RS10270 PF03169 OPT oligopeptide transporter protein CCD90_RS10275 PF00684 DnaJ central domain CCD90_RS10275 PF01556 DnaJ C terminal domain CCD90_RS10275 PF00226 DnaJ domain CCD90_RS10285 PF10531 SLBB domain CCD90_RS10320 PF01258 Prokaryotic dksA/traR C4-type zinc finger CCD90_RS10325 PF14748 Pyrroline-5-carboxylate reductase dimerisation CCD90_RS10325 PF03807 NADP oxidoreductase coenzyme F420-dependent CCD90_RS10335 PF01168 Alanine racemase, N-terminal domain CCD90_RS10340 PF00437 Type II/IV secretion system protein CCD90_RS10345 PF00437 Type II/IV secretion system protein CCD90_RS10350 PF12805 FUSC-like inner membrane protein yccS CCD90_RS10365 PF05567 Neisseria PilC beta-propeller domain CCD90_RS10370 PF02881 SRP54-type protein, helical bundle domain CCD90_RS10370 PF00448 SRP54-type protein, GTPase domain CCD90_RS10375 PF08534 Redoxin CCD90_RS10375 PF01625 Peptide methionine sulfoxide reductase CCD90_RS10375 PF01641 SelR domain CCD90_RS10380 PF02464 Competence-damaged protein CCD90_RS10385 PF05552 Conserved TM helix CCD90_RS10385 PF00924 Mechanosensitive ion channel CCD90_RS10405 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS10405 PF12804 MobA-like NTP transferase domain CCD90_RS10405 PF14602 Hexapeptide repeat of succinyl-transferase CCD90_RS10410 PF08274 PhnA Zinc-Ribbon CCD90_RS10410 PF03831 PhnA domain CCD90_RS10415 PF04261 Dyp-type peroxidase family CCD90_RS10420 PF13473 Cupredoxin-like domain CCD90_RS10420 PF09375 Imelysin CCD90_RS10425 PF03239 Iron permease FTR1 family CCD90_RS10445 PF01380 SIS domain CCD90_RS10450 PF08264 Anticodon-binding domain of tRNA CCD90_RS10450 PF09334 tRNA synthetases class I (M) CCD90_RS10450 PF01588 Putative tRNA binding domain CCD90_RS10455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCD90_RS10455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CCD90_RS10465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCD90_RS10470 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS10470 PF00114 Pilin (bacterial filament) CCD90_RS10475 PF00114 Pilin (bacterial filament) CCD90_RS10475 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS10485 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS10485 PF00114 Pilin (bacterial filament) CCD90_RS10495 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CCD90_RS10510 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CCD90_RS10510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CCD90_RS10515 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CCD90_RS10525 PF03741 Integral membrane protein TerC family CCD90_RS10535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CCD90_RS10540 PF00162 Phosphoglycerate kinase CCD90_RS10550 PF18075 FtsX extracellular domain CCD90_RS10555 PF00005 ABC transporter CCD90_RS10565 PF08534 Redoxin CCD90_RS10570 PF03960 ArsC family CCD90_RS10580 PF00749 tRNA synthetases class I (E and Q), catalytic domain CCD90_RS10595 PF01624 MutS domain I CCD90_RS10595 PF05188 MutS domain II CCD90_RS10595 PF00488 MutS domain V CCD90_RS10595 PF05190 MutS family domain IV CCD90_RS10595 PF05192 MutS domain III CCD90_RS10600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CCD90_RS10600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CCD90_RS10610 PF18389 TrmO C-terminal domain CCD90_RS10610 PF01980 tRNA-methyltransferase O CCD90_RS10615 PF00857 Isochorismatase family CCD90_RS10620 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CCD90_RS10625 PF01012 Electron transfer flavoprotein domain CCD90_RS10630 PF00766 Electron transfer flavoprotein FAD-binding domain CCD90_RS10630 PF01012 Electron transfer flavoprotein domain CCD90_RS10635 PF01205 Uncharacterized protein family UPF0029 CCD90_RS10635 PF09186 Domain of unknown function (DUF1949) CCD90_RS10645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CCD90_RS10645 PF02843 Phosphoribosylglycinamide synthetase, C domain CCD90_RS10645 PF02844 Phosphoribosylglycinamide synthetase, N domain CCD90_RS10650 PF01300 Telomere recombination CCD90_RS10655 PF12762 ISXO2-like transposase domain CCD90_RS10685 PF04542 Sigma-70 region 2 CCD90_RS10685 PF08281 Sigma-70, region 4 CCD90_RS10690 PF09836 Putative DNA-binding domain CCD90_RS10695 PF05114 Protein of unknown function (DUF692) CCD90_RS10705 PF07681 DoxX CCD90_RS10710 PF01734 Patatin-like phospholipase CCD90_RS10715 PF00472 RF-1 domain CCD90_RS10715 PF03462 PCRF domain CCD90_RS10730 PF00854 POT family CCD90_RS10750 PF01103 Surface antigen CCD90_RS10750 PF17243 POTRA domain TamA domain 1 CCD90_RS10770 PF00375 Sodium:dicarboxylate symporter family CCD90_RS10790 PF00764 Arginosuccinate synthase CCD90_RS10795 PF02464 Competence-damaged protein CCD90_RS10795 PF18146 Damage-inducible protein CinA KH domain CCD90_RS10795 PF00994 Probable molybdopterin binding domain CCD90_RS10800 PF01343 Peptidase family S49 CCD90_RS10800 PF06965 Na+/H+ antiporter 1 CCD90_RS10940 PF00696 Amino acid kinase family CCD90_RS10945 PF00889 Elongation factor TS CCD90_RS10955 PF00318 Ribosomal protein S2 CCD90_RS10965 PF01812 5-formyltetrahydrofolate cyclo-ligase family CCD90_RS10980 PF06039 Malate:quinone oxidoreductase (Mqo) CCD90_RS10995 PF00557 Metallopeptidase family M24 CCD90_RS11010 PF13580 SIS domain CCD90_RS11015 PF02021 Uncharacterised protein family UPF0102 CCD90_RS11020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCD90_RS11025 PF01292 Prokaryotic cytochrome b561 CCD90_RS11040 PF01926 50S ribosome-binding GTPase CCD90_RS11040 PF01018 GTP1/OBG CCD90_RS11050 PF09190 DALR domain CCD90_RS11050 PF01406 tRNA synthetases class I (C) catalytic domain CCD90_RS11055 PF03372 Endonuclease/Exonuclease/phosphatase family CCD90_RS11070 PF01118 Semialdehyde dehydrogenase, NAD binding domain CCD90_RS11070 PF02774 Semialdehyde dehydrogenase, dimerisation domain CCD90_RS11080 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CCD90_RS11080 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CCD90_RS11105 PF01467 Cytidylyltransferase-like CCD90_RS11110 PF02237 Biotin protein ligase C terminal domain CCD90_RS11110 PF03099 Biotin/lipoate A/B protein ligase family CCD90_RS11110 PF03309 Type III pantothenate kinase CCD90_RS11130 PF05690 Thiazole biosynthesis protein ThiG CCD90_RS11150 PF02581 Thiamine monophosphate synthase CCD90_RS11155 PF01266 FAD dependent oxidoreductase CCD90_RS11165 PF01523 Putative modulator of DNA gyrase CCD90_RS11170 PF05175 Methyltransferase small domain CCD90_RS11170 PF17827 PrmC N-terminal domain CCD90_RS11175 PF03553 Na+/H+ antiporter family CCD90_RS11175 PF13726 Na+-H+ antiporter family CCD90_RS11180 PF04102 SlyX CCD90_RS11195 PF00899 ThiF family CCD90_RS11200 PF00311 Phosphoenolpyruvate carboxylase CCD90_RS11205 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CCD90_RS11205 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CCD90_RS11225 PF00572 Ribosomal protein L13 CCD90_RS11230 PF00380 Ribosomal protein S9/S16 CCD90_RS11235 PF01609 Transposase DDE domain CCD90_RS11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCD90_RS11245 PF03466 LysR substrate binding domain CCD90_RS11250 PF01784 NIF3 (NGG1p interacting factor 3) CCD90_RS11255 PF00355 Rieske [2Fe-2S] domain CCD90_RS11255 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CCD90_RS11260 PF00033 Cytochrome b/b6/petB CCD90_RS11260 PF00032 Cytochrome b(C-terminal)/b6/petD CCD90_RS11265 PF02167 Cytochrome C1 family CCD90_RS11270 PF02646 RmuC family CCD90_RS11275 PF00753 Metallo-beta-lactamase superfamily CCD90_RS11280 PF14743 DNA ligase OB-like domain CCD90_RS11280 PF01068 ATP dependent DNA ligase domain CCD90_RS11285 PF00156 Phosphoribosyl transferase domain CCD90_RS11295 PF00381 PTS HPr component phosphorylation site CCD90_RS11300 PF05524 PEP-utilising enzyme, N-terminal CCD90_RS11300 PF02896 PEP-utilising enzyme, TIM barrel domain CCD90_RS11300 PF00391 PEP-utilising enzyme, mobile domain CCD90_RS11320 PF00005 ABC transporter CCD90_RS11320 PF08402 TOBE domain CCD90_RS11340 PF13667 ThiC-associated domain CCD90_RS11340 PF01964 Radical SAM ThiC family CCD90_RS11360 PF00267 Gram-negative porin CCD90_RS11380 PF01416 tRNA pseudouridine synthase CCD90_RS11410 PF00534 Glycosyl transferases group 1 CCD90_RS11410 PF13439 Glycosyltransferase Family 4 CCD90_RS11415 PF03222 Tryptophan/tyrosine permease family CCD90_RS11425 PF01636 Phosphotransferase enzyme family CCD90_RS11435 PF02447 GntP family permease CCD90_RS11440 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS11445 PF00484 Carbonic anhydrase CCD90_RS11450 PF01467 Cytidylyltransferase-like CCD90_RS11460 PF02590 Predicted SPOUT methyltransferase CCD90_RS11465 PF04362 Bacterial Fe(2+) trafficking CCD90_RS11470 PF01027 Inhibitor of apoptosis-promoting Bax1 CCD90_RS11475 PF01467 Cytidylyltransferase-like CCD90_RS11480 PF00849 RNA pseudouridylate synthase CCD90_RS11510 PF10531 SLBB domain CCD90_RS11515 PF07963 Prokaryotic N-terminal methylation motif CCD90_RS11515 PF08334 Type II secretion system (T2SS), protein G CCD90_RS11540 PF05762 VWA domain containing CoxE-like protein CCD90_RS11545 PF17868 AAA lid domain CCD90_RS11545 PF12592 Protein of unknown function (DUF3763) CCD90_RS11545 PF07728 AAA domain (dynein-related subfamily) CCD90_RS11550 PF00270 DEAD/DEAH box helicase CCD90_RS11550 PF11898 Domain of unknown function (DUF3418) CCD90_RS11550 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CCD90_RS11550 PF00271 Helicase conserved C-terminal domain CCD90_RS11550 PF04408 Helicase associated domain (HA2) CCD90_RS11565 PF00270 DEAD/DEAH box helicase CCD90_RS11565 PF00271 Helicase conserved C-terminal domain CCD90_RS11565 PF11898 Domain of unknown function (DUF3418) CCD90_RS11565 PF04408 Helicase associated domain (HA2) CCD90_RS11565 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CCD90_RS11570 PF00654 Voltage gated chloride channel CCD90_RS11575 PF01960 ArgJ family CCD90_RS11580 PF04172 LrgB-like family CCD90_RS11585 PF03788 LrgA family CCD90_RS11600 PF00877 NlpC/P60 family CCD90_RS11615 PF01609 Transposase DDE domain CCD90_RS11630 PF00571 CBS domain CCD90_RS11630 PF03448 MgtE intracellular N domain CCD90_RS11630 PF01769 Divalent cation transporter CCD90_RS11645 PF16123 Hydroxyacylglutathione hydrolase C-terminus CCD90_RS11645 PF00753 Metallo-beta-lactamase superfamily CCD90_RS11650 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CCD90_RS11650 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CCD90_RS11650 PF02769 AIR synthase related protein, C-terminal domain CCD90_RS11660 PF00543 Nitrogen regulatory protein P-II CCD90_RS11665 PF00005 ABC transporter CCD90_RS11675 PF01032 FecCD transport family CCD90_RS11720 PF10396 GTP-binding protein TrmE N-terminus CCD90_RS11720 PF12631 MnmE helical domain CCD90_RS11720 PF01926 50S ribosome-binding GTPase CCD90_RS11730 PF02395 Immunoglobulin A1 protease CCD90_RS11730 PF03212 Pertactin CCD90_RS11735 PF01609 Transposase DDE domain CCD90_RS11745 PF01609 Transposase DDE domain CCD90_RS11755 PF01367 5'-3' exonuclease, C-terminal SAM fold CCD90_RS11755 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CCD90_RS11755 PF01612 3'-5' exonuclease CCD90_RS11755 PF00476 DNA polymerase family A CCD90_RS11760 PF02664 S-Ribosylhomocysteinase (LuxS) CCD90_RS11765 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) CCD90_RS11785 PF01491 Frataxin-like domain CCD90_RS11795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CCD90_RS11795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CCD90_RS11805 PF00209 Sodium:neurotransmitter symporter family CCD90_RS11820 PF12762 ISXO2-like transposase domain CCD90_RS11825 PF00166 Chaperonin 10 Kd subunit CCD90_RS11830 PF00118 TCP-1/cpn60 chaperonin family CCD90_RS11840 PF00593 TonB dependent receptor CCD90_RS11840 PF07715 TonB-dependent Receptor Plug Domain CCD90_RS11860 PF04575 Protein of unknown function (DUF560) CCD90_RS11865 PF00425 chorismate binding enzyme CCD90_RS11865 PF00117 Glutamine amidotransferase class-I CCD90_RS11865 PF04715 Anthranilate synthase component I, N terminal region CCD90_RS11870 PF00082 Subtilase family CCD90_RS11870 PF03797 Autotransporter beta-domain CCD90_RS11880 PF00171 Aldehyde dehydrogenase family CCD90_RS11900 PF12833 Helix-turn-helix domain CCD90_RS11900 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CCD90_RS11905 PF00005 ABC transporter CCD90_RS11910 PF02405 Permease MlaE CCD90_RS11915 PF02470 MlaD protein CCD90_RS11920 PF05494 MlaC protein CCD90_RS11950 PF14602 Hexapeptide repeat of succinyl-transferase CCD90_RS11950 PF12464 Maltose acetyltransferase CCD90_RS11950 PF00132 Bacterial transferase hexapeptide (six repeats) CCD90_RS11960 PF01197 Ribosomal protein L31 CCD90_RS11980 PF00043 Glutathione S-transferase, C-terminal domain CCD90_RS11980 PF02798 Glutathione S-transferase, N-terminal domain CCD90_RS11985 PF04386 Stringent starvation protein B CCD90_RS11990 PF09424 Yqey-like protein CCD90_RS11995 PF01165 Ribosomal protein S21 CCD90_RS12000 PF14718 Soluble lytic murein transglycosylase L domain CCD90_RS12000 PF01464 Transglycosylase SLT domain CCD90_RS12005 PF09383 NIL domain CCD90_RS12005 PF00005 ABC transporter CCD90_RS12010 PF00528 Binding-protein-dependent transport system inner membrane component CCD90_RS12015 PF03180 NLPA lipoprotein CCD90_RS12020 PF02441 Flavoprotein CCD90_RS12030 PF02195 ParB-like nuclease domain CCD90_RS12030 PF17762 HTH domain found in ParB protein CCD90_RS12050 PF00119 ATP synthase A chain CCD90_RS12055 PF00137 ATP synthase subunit C CCD90_RS12060 PF00430 ATP synthase B/B' CF(0) CCD90_RS12065 PF00213 ATP synthase delta (OSCP) subunit CCD90_RS12070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCD90_RS12070 PF02874 ATP synthase alpha/beta family, beta-barrel domain CCD90_RS12070 PF00306 ATP synthase alpha/beta chain, C terminal domain CCD90_RS12075 PF00231 ATP synthase CCD90_RS12080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCD90_RS12080 PF02874 ATP synthase alpha/beta family, beta-barrel domain CCD90_RS12085 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CCD90_RS12085 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CCD90_RS12095 PF02091 Glycyl-tRNA synthetase alpha subunit CCD90_RS12105 PF02092 Glycyl-tRNA synthetase beta subunit CCD90_RS12105 PF05746 DALR anticodon binding domain CCD90_RS12110 PF00535 Glycosyl transferase family 2 CCD90_RS12115 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CCD90_RS12125 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CCD90_RS12130 PF04452 RNA methyltransferase CCD90_RS12140 PF00459 Inositol monophosphatase family CCD90_RS12165 PF01609 Transposase DDE domain CCD90_RS12195 PF02540 NAD synthase CCD90_RS12195 PF00117 Glutamine amidotransferase class-I CCD90_RS12195 PF00958 GMP synthase C terminal domain CCD90_RS12200 PF00664 ABC transporter transmembrane region CCD90_RS12200 PF00005 ABC transporter CCD90_RS12205 PF00698 Acyl transferase domain CCD90_RS12215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CCD90_RS12215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CCD90_RS12235 PF02504 Fatty acid synthesis protein CCD90_RS12245 PF01783 Ribosomal L32p protein family CCD90_RS12255 PF02545 Maf-like protein CCD90_RS12260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCD90_RS12265 PF02096 60Kd inner membrane protein CCD90_RS12265 PF14849 YidC periplasmic domain CCD90_RS12275 PF01809 Putative membrane protein insertion efficiency factor CCD90_RS12280 PF00825 Ribonuclease P CCD90_RS12285 PF00468 Ribosomal protein L34