locus-tag class description NEJAP_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NEJAP_RS00005 PF11638 DnaA N-terminal domain NEJAP_RS00005 PF00308 Bacterial dnaA protein NEJAP_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NEJAP_RS00010 PF02767 DNA polymerase III beta subunit, central domain NEJAP_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NEJAP_RS00015 PF02463 RecF/RecN/SMC N terminal domain NEJAP_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS00020 PF18053 DNA gyrase B subunit insert domain NEJAP_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus NEJAP_RS00020 PF00204 DNA gyrase B NEJAP_RS00020 PF01751 Toprim domain NEJAP_RS00025 PF01965 DJ-1/PfpI family NEJAP_RS00030 PF06906 Protein of unknown function (DUF1272) NEJAP_RS00035 PF06965 Na+/H+ antiporter 1 NEJAP_RS00045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00045 PF03466 LysR substrate binding domain NEJAP_RS00050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NEJAP_RS00050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NEJAP_RS00055 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS00060 PF14525 AraC-binding-like domain NEJAP_RS00060 PF12833 Helix-turn-helix domain NEJAP_RS00070 PF02092 Glycyl-tRNA synthetase beta subunit NEJAP_RS00070 PF05746 DALR anticodon binding domain NEJAP_RS00075 PF02091 Glycyl-tRNA synthetase alpha subunit NEJAP_RS00080 PF03279 Bacterial lipid A biosynthesis acyltransferase NEJAP_RS00085 PF02386 Cation transport protein NEJAP_RS00090 PF02254 TrkA-N domain NEJAP_RS00090 PF02080 TrkA-C domain NEJAP_RS00095 PF01029 NusB family NEJAP_RS00095 PF01189 16S rRNA methyltransferase RsmB/F NEJAP_RS00100 PF02911 Formyl transferase, C-terminal domain NEJAP_RS00100 PF00551 Formyl transferase NEJAP_RS00105 PF01327 Polypeptide deformylase NEJAP_RS00115 PF17782 DprA winged helix domain NEJAP_RS00115 PF02481 DNA recombination-mediator protein A NEJAP_RS00120 PF01300 Telomere recombination NEJAP_RS00125 PF01218 Coproporphyrinogen III oxidase NEJAP_RS00130 PF08501 Shikimate dehydrogenase substrate binding domain NEJAP_RS00130 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NEJAP_RS00130 PF01488 Shikimate / quinate 5-dehydrogenase NEJAP_RS00135 PF13654 AAA domain NEJAP_RS00135 PF05362 Lon protease (S16) C-terminal proteolytic domain NEJAP_RS00140 PF00034 Cytochrome c NEJAP_RS00145 PF05088 Bacterial NAD-glutamate dehydrogenase NEJAP_RS00155 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS00185 PF03150 Di-haem cytochrome c peroxidase NEJAP_RS00195 PF03060 Nitronate monooxygenase NEJAP_RS00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00225 PF03466 LysR substrate binding domain NEJAP_RS00235 PF04371 Porphyromonas-type peptidyl-arginine deiminase NEJAP_RS00245 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS00250 PF01432 Peptidase family M3 NEJAP_RS00260 PF13673 Acetyltransferase (GNAT) domain NEJAP_RS00260 PF00117 Glutamine amidotransferase class-I NEJAP_RS00260 PF03352 Methyladenine glycosylase NEJAP_RS00260 PF00958 GMP synthase C terminal domain NEJAP_RS00260 PF13302 Acetyltransferase (GNAT) domain NEJAP_RS00265 PF01554 MatE NEJAP_RS00270 PF00950 ABC 3 transport family NEJAP_RS00275 PF00005 ABC transporter NEJAP_RS00280 PF01475 Ferric uptake regulator family NEJAP_RS00285 PF01297 Zinc-uptake complex component A periplasmic NEJAP_RS00310 PF08042 PqqA family NEJAP_RS00315 PF12706 Beta-lactamase superfamily domain NEJAP_RS00320 PF03070 TENA/THI-4/PQQC family NEJAP_RS00325 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NEJAP_RS00330 PF04055 Radical SAM superfamily NEJAP_RS00330 PF13186 Iron-sulfur cluster-binding domain NEJAP_RS00335 PF00326 Prolyl oligopeptidase family NEJAP_RS00340 PF01476 LysM domain NEJAP_RS00340 PF01551 Peptidase family M23 NEJAP_RS00340 PF08525 Opacity-associated protein A N-terminal motif NEJAP_RS00350 PF05661 Protein of unknown function (DUF808) NEJAP_RS00360 PF00465 Iron-containing alcohol dehydrogenase NEJAP_RS00365 PF01627 Hpt domain NEJAP_RS00365 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS00365 PF00672 HAMP domain NEJAP_RS00365 PF00072 Response regulator receiver domain NEJAP_RS00365 PF17149 Periplasmic sensor domain found in signal transduction proteins NEJAP_RS00375 PF00989 PAS fold NEJAP_RS00375 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS00380 PF00072 Response regulator receiver domain NEJAP_RS00380 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS00390 PF01810 LysE type translocator NEJAP_RS00420 PF00005 ABC transporter NEJAP_RS00440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NEJAP_RS00460 PF13360 PQQ-like domain NEJAP_RS00460 PF01011 PQQ enzyme repeat NEJAP_RS00465 PF03466 LysR substrate binding domain NEJAP_RS00465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00470 PF00171 Aldehyde dehydrogenase family NEJAP_RS00475 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS00480 PF00563 EAL domain NEJAP_RS00480 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS00480 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS00485 PF05128 Domain of unknown function (DUF697) NEJAP_RS00490 PF04317 YcjX-like family, DUF463 NEJAP_RS00505 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS00505 PF00072 Response regulator receiver domain NEJAP_RS00515 PF00072 Response regulator receiver domain NEJAP_RS00515 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS00520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS00520 PF08447 PAS fold NEJAP_RS00525 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS00525 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS00525 PF00563 EAL domain NEJAP_RS00530 PF00664 ABC transporter transmembrane region NEJAP_RS00530 PF00005 ABC transporter NEJAP_RS00535 PF00005 ABC transporter NEJAP_RS00535 PF00664 ABC transporter transmembrane region NEJAP_RS00540 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS00540 PF00158 Sigma-54 interaction domain NEJAP_RS00540 PF00072 Response regulator receiver domain NEJAP_RS00545 PF08173 Membrane bound YbgT-like protein NEJAP_RS00550 PF02322 Cytochrome bd terminal oxidase subunit II NEJAP_RS00555 PF01654 Cytochrome bd terminal oxidase subunit I NEJAP_RS00560 PF10518 TAT (twin-arginine translocation) pathway signal sequence NEJAP_RS00560 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding NEJAP_RS00560 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS00585 PF01425 Amidase NEJAP_RS00595 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS00605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS00620 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS00620 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS00620 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS00625 PF00171 Aldehyde dehydrogenase family NEJAP_RS00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00630 PF03466 LysR substrate binding domain NEJAP_RS00635 PF01268 Formate--tetrahydrofolate ligase NEJAP_RS00640 PF02743 Cache domain NEJAP_RS00640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS00640 PF00672 HAMP domain NEJAP_RS00645 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS00650 PF01842 ACT domain NEJAP_RS00650 PF00551 Formyl transferase NEJAP_RS00655 PF01266 FAD dependent oxidoreductase NEJAP_RS00655 PF16350 FAD dependent oxidoreductase central domain NEJAP_RS00655 PF01571 Aminomethyltransferase folate-binding domain NEJAP_RS00655 PF08669 Glycine cleavage T-protein C-terminal barrel domain NEJAP_RS00660 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NEJAP_RS00660 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NEJAP_RS00670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS00675 PF00873 AcrB/AcrD/AcrF family NEJAP_RS00680 PF00561 alpha/beta hydrolase fold NEJAP_RS00685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00700 PF03466 LysR substrate binding domain NEJAP_RS00705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00705 PF03466 LysR substrate binding domain NEJAP_RS00710 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS00715 PF00762 Ferrochelatase NEJAP_RS00720 PF03109 ABC1 family NEJAP_RS00725 PF00255 Glutathione peroxidase NEJAP_RS00730 PF12833 Helix-turn-helix domain NEJAP_RS00735 PF02423 Ornithine cyclodeaminase/mu-crystallin family NEJAP_RS00740 PF01266 FAD dependent oxidoreductase NEJAP_RS00750 PF01070 FMN-dependent dehydrogenase NEJAP_RS00755 PF00356 Bacterial regulatory proteins, lacI family NEJAP_RS00760 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS00765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS00770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS00770 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS00775 PF00815 Histidinol dehydrogenase NEJAP_RS00785 PF00107 Zinc-binding dehydrogenase NEJAP_RS00785 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS00790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NEJAP_RS00790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NEJAP_RS00805 PF04362 Bacterial Fe(2+) trafficking NEJAP_RS00810 PF00730 HhH-GPD superfamily base excision DNA repair protein NEJAP_RS00810 PF14815 NUDIX domain NEJAP_RS00810 PF00633 Helix-hairpin-helix motif NEJAP_RS00820 PF00475 Imidazoleglycerol-phosphate dehydratase NEJAP_RS00825 PF00117 Glutamine amidotransferase class-I NEJAP_RS00830 PF00977 Histidine biosynthesis protein NEJAP_RS00840 PF00873 AcrB/AcrD/AcrF family NEJAP_RS00845 PF12792 CSS motif domain associated with EAL NEJAP_RS00845 PF00563 EAL domain NEJAP_RS00880 PF00005 ABC transporter NEJAP_RS00885 PF02361 Cobalt transport protein NEJAP_RS00890 PF02632 BioY family NEJAP_RS00895 PF00490 Delta-aminolevulinic acid dehydratase NEJAP_RS00900 PF13089 Polyphosphate kinase N-terminal domain NEJAP_RS00900 PF13090 Polyphosphate kinase C-terminal domain 2 NEJAP_RS00900 PF02503 Polyphosphate kinase middle domain NEJAP_RS00900 PF17941 Polyphosphate kinase C-terminal domain 1 NEJAP_RS00905 PF00005 ABC transporter NEJAP_RS00910 PF00497 Bacterial extracellular solute-binding proteins, family 3 NEJAP_RS00915 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS00920 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS00925 PF00106 short chain dehydrogenase NEJAP_RS00930 PF03466 LysR substrate binding domain NEJAP_RS00930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00945 PF16320 Ribosomal protein L7/L12 dimerisation domain NEJAP_RS00945 PF00542 Ribosomal protein L7/L12 C-terminal domain NEJAP_RS00950 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NEJAP_RS00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00975 PF03466 LysR substrate binding domain NEJAP_RS00985 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS00995 PF03466 LysR substrate binding domain NEJAP_RS01000 PF17191 RecG wedge domain NEJAP_RS01000 PF00270 DEAD/DEAH box helicase NEJAP_RS01000 PF00271 Helicase conserved C-terminal domain NEJAP_RS01015 PF00849 RNA pseudouridylate synthase NEJAP_RS01015 PF01479 S4 domain NEJAP_RS01020 PF00037 4Fe-4S binding domain NEJAP_RS01025 PF01467 Cytidylyltransferase-like NEJAP_RS01030 PF01435 Peptidase family M48 NEJAP_RS01035 PF08361 MAATS-type transcriptional repressor, C-terminal region NEJAP_RS01035 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS01050 PF00005 ABC transporter NEJAP_RS01055 PF18075 FtsX extracellular domain NEJAP_RS01060 PF00140 Sigma-70 factor, region 1.2 NEJAP_RS01060 PF04542 Sigma-70 region 2 NEJAP_RS01060 PF04545 Sigma-70, region 4 NEJAP_RS01065 PF04241 Protein of unknown function (DUF423) NEJAP_RS01075 PF05690 Thiazole biosynthesis protein ThiG NEJAP_RS01080 PF02390 Putative methyltransferase NEJAP_RS01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS01085 PF00672 HAMP domain NEJAP_RS01085 PF02743 Cache domain NEJAP_RS01100 PF00072 Response regulator receiver domain NEJAP_RS01100 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS01105 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS01105 PF16527 Two-component sensor protein CpxA, periplasmic domain NEJAP_RS01105 PF00672 HAMP domain NEJAP_RS01110 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01110 PF00563 EAL domain NEJAP_RS01110 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01115 PF00543 Nitrogen regulatory protein P-II NEJAP_RS01120 PF00909 Ammonium Transporter Family NEJAP_RS01125 PF00543 Nitrogen regulatory protein P-II NEJAP_RS01130 PF04380 Membrane fusogenic activity NEJAP_RS01140 PF13335 Magnesium chelatase, subunit ChlI C-terminal NEJAP_RS01140 PF01078 Magnesium chelatase, subunit ChlI NEJAP_RS01145 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01145 PF00563 EAL domain NEJAP_RS01145 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01150 PF13361 UvrD-like helicase C-terminal domain NEJAP_RS01150 PF00580 UvrD/REP helicase N-terminal domain NEJAP_RS01155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NEJAP_RS01170 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NEJAP_RS01170 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NEJAP_RS01175 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NEJAP_RS01175 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NEJAP_RS01180 PF01641 SelR domain NEJAP_RS01190 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01190 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01190 PF00563 EAL domain NEJAP_RS01195 PF12801 4Fe-4S binding domain NEJAP_RS01195 PF04205 FMN-binding domain NEJAP_RS01200 PF18764 Nitrous oxide reductase propeller repeat NEJAP_RS01200 PF18793 Nitrous oxide reductase propeller repeat 2 NEJAP_RS01205 PF05048 Periplasmic copper-binding protein (NosD) NEJAP_RS01210 PF00005 ABC transporter NEJAP_RS01215 PF12679 ABC-2 family transporter protein NEJAP_RS01220 PF05573 NosL NEJAP_RS01235 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01235 PF00360 Phytochrome region NEJAP_RS01235 PF00563 EAL domain NEJAP_RS01235 PF01590 GAF domain NEJAP_RS01240 PF00563 EAL domain NEJAP_RS01240 PF08668 HDOD domain NEJAP_RS01245 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01245 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01245 PF00563 EAL domain NEJAP_RS01255 PF00920 Dehydratase family NEJAP_RS01265 PF00027 Cyclic nucleotide-binding domain NEJAP_RS01265 PF13545 Crp-like helix-turn-helix domain NEJAP_RS01280 PF00072 Response regulator receiver domain NEJAP_RS01280 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS01290 PF00583 Acetyltransferase (GNAT) family NEJAP_RS01290 PF00696 Amino acid kinase family NEJAP_RS01295 PF01546 Peptidase family M20/M25/M40 NEJAP_RS01295 PF07687 Peptidase dimerisation domain NEJAP_RS01300 PF01384 Phosphate transporter family NEJAP_RS01305 PF01865 Protein of unknown function DUF47 NEJAP_RS01315 PF03710 Glutamate-ammonia ligase adenylyltransferase NEJAP_RS01315 PF08335 GlnD PII-uridylyltransferase NEJAP_RS01320 PF01063 Amino-transferase class IV NEJAP_RS01345 PF03279 Bacterial lipid A biosynthesis acyltransferase NEJAP_RS01350 PF00005 ABC transporter NEJAP_RS01350 PF00664 ABC transporter transmembrane region NEJAP_RS01355 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NEJAP_RS01360 PF01491 Frataxin-like domain NEJAP_RS01370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NEJAP_RS01370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NEJAP_RS01375 PF01678 Diaminopimelate epimerase NEJAP_RS01385 PF00589 Phage integrase family NEJAP_RS01385 PF02899 Phage integrase, N-terminal SAM-like domain NEJAP_RS01395 PF06969 HemN C-terminal domain NEJAP_RS01395 PF04055 Radical SAM superfamily NEJAP_RS01400 PF01725 Ham1 family NEJAP_RS01410 PF07021 Methionine biosynthesis protein MetW NEJAP_RS01410 PF00561 alpha/beta hydrolase fold NEJAP_RS01415 PF00561 alpha/beta hydrolase fold NEJAP_RS01420 PF02594 Uncharacterised ACR, YggU family COG1872 NEJAP_RS01425 PF02325 YGGT family NEJAP_RS01430 PF03807 NADP oxidoreductase coenzyme F420-dependent NEJAP_RS01430 PF14748 Pyrroline-5-carboxylate reductase dimerisation NEJAP_RS01435 PF01168 Alanine racemase, N-terminal domain NEJAP_RS01440 PF00437 Type II/IV secretion system protein NEJAP_RS01445 PF00437 Type II/IV secretion system protein NEJAP_RS01450 PF01979 Amidohydrolase family NEJAP_RS01455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NEJAP_RS01455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NEJAP_RS01460 PF00156 Phosphoribosyl transferase domain NEJAP_RS01465 PF03652 Holliday junction resolvase NEJAP_RS01470 PF02622 Uncharacterized ACR, COG1678 NEJAP_RS01480 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NEJAP_RS01480 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NEJAP_RS01485 PF04452 RNA methyltransferase NEJAP_RS01490 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01490 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01490 PF00563 EAL domain NEJAP_RS01495 PF00438 S-adenosylmethionine synthetase, N-terminal domain NEJAP_RS01495 PF02773 S-adenosylmethionine synthetase, C-terminal domain NEJAP_RS01495 PF02772 S-adenosylmethionine synthetase, central domain NEJAP_RS01500 PF00456 Transketolase, thiamine diphosphate binding domain NEJAP_RS01500 PF02779 Transketolase, pyrimidine binding domain NEJAP_RS01500 PF02780 Transketolase, C-terminal domain NEJAP_RS01505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NEJAP_RS01505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NEJAP_RS01510 PF00162 Phosphoglycerate kinase NEJAP_RS01515 PF01116 Fructose-bisphosphate aldolase class-II NEJAP_RS01520 PF01914 MarC family integral membrane protein NEJAP_RS01530 PF01042 Endoribonuclease L-PSP NEJAP_RS01535 PF02146 Sir2 family NEJAP_RS01560 PF00155 Aminotransferase class I and II NEJAP_RS01560 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS01565 PF00171 Aldehyde dehydrogenase family NEJAP_RS01570 PF07286 Protein of unknown function (DUF1445) NEJAP_RS01575 PF03746 LamB/YcsF family NEJAP_RS01580 PF02682 Carboxyltransferase domain, subdomain C and D NEJAP_RS01585 PF02626 Carboxyltransferase domain, subdomain A and B NEJAP_RS01595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS01595 PF03466 LysR substrate binding domain NEJAP_RS01600 PF01063 Amino-transferase class IV NEJAP_RS01605 PF04893 Yip1 domain NEJAP_RS01610 PF01040 UbiA prenyltransferase family NEJAP_RS01615 PF02628 Cytochrome oxidase assembly protein NEJAP_RS01635 PF00510 Cytochrome c oxidase subunit III NEJAP_RS01640 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NEJAP_RS01645 PF00115 Cytochrome C and Quinol oxidase polypeptide I NEJAP_RS01650 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NEJAP_RS01650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NEJAP_RS01670 PF01274 Malate synthase NEJAP_RS01680 PF00924 Mechanosensitive ion channel NEJAP_RS01680 PF12794 Mechanosensitive ion channel inner membrane domain 1 NEJAP_RS01680 PF12795 Mechanosensitive ion channel porin domain NEJAP_RS01690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NEJAP_RS01690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NEJAP_RS01695 PF06865 Pyrimidine/purine nucleoside phosphorylase NEJAP_RS01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS01700 PF03466 LysR substrate binding domain NEJAP_RS01705 PF07690 Major Facilitator Superfamily NEJAP_RS01710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NEJAP_RS01710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NEJAP_RS01715 PF06029 AlkA N-terminal domain NEJAP_RS01715 PF00730 HhH-GPD superfamily base excision DNA repair protein NEJAP_RS01720 PF00072 Response regulator receiver domain NEJAP_RS01720 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01725 PF05698 Bacterial trigger factor protein (TF) C-terminus NEJAP_RS01730 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS01740 PF03653 Uncharacterised protein family (UPF0093) NEJAP_RS01750 PF01209 ubiE/COQ5 methyltransferase family NEJAP_RS01760 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS01760 PF07724 AAA domain (Cdc48 subfamily) NEJAP_RS01765 PF00227 Proteasome subunit NEJAP_RS01775 PF00750 tRNA synthetases class I (R) NEJAP_RS01775 PF05746 DALR anticodon binding domain NEJAP_RS01775 PF03485 Arginyl tRNA synthetase N terminal domain NEJAP_RS01780 PF00672 HAMP domain NEJAP_RS01780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS01785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NEJAP_RS01785 PF18074 Primosomal protein N C-terminal domain NEJAP_RS01785 PF17764 3′ DNA-binding domain (3′BD) NEJAP_RS01785 PF00271 Helicase conserved C-terminal domain NEJAP_RS01785 PF00270 DEAD/DEAH box helicase NEJAP_RS01790 PF01197 Ribosomal protein L31 NEJAP_RS01800 PF00390 Malic enzyme, N-terminal domain NEJAP_RS01800 PF03949 Malic enzyme, NAD binding domain NEJAP_RS01805 PF00905 Penicillin binding protein transpeptidase domain NEJAP_RS01805 PF00912 Transglycosylase NEJAP_RS01805 PF17092 Penicillin-binding protein OB-like domain NEJAP_RS01810 PF11104 Type IV pilus assembly protein PilM; NEJAP_RS01820 PF04350 Pilus assembly protein, PilO NEJAP_RS01825 PF04351 Pilus assembly protein, PilP NEJAP_RS01830 PF00263 Bacterial type II and III secretion system protein NEJAP_RS01830 PF11741 AMIN domain NEJAP_RS01830 PF03958 Bacterial type II/III secretion system short domain NEJAP_RS01830 PF07660 Secretin and TonB N terminus short domain NEJAP_RS01835 PF01202 Shikimate kinase NEJAP_RS01840 PF01761 3-dehydroquinate synthase NEJAP_RS01850 PF01645 Conserved region in glutamate synthase NEJAP_RS01850 PF00310 Glutamine amidotransferases class-II NEJAP_RS01850 PF04898 Glutamate synthase central domain NEJAP_RS01850 PF01493 GXGXG motif NEJAP_RS01855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NEJAP_RS01855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS01860 PF00892 EamA-like transporter family NEJAP_RS01870 PF01266 FAD dependent oxidoreductase NEJAP_RS01875 PF01042 Endoribonuclease L-PSP NEJAP_RS01885 PF01970 Tripartite tricarboxylate transporter TctA family NEJAP_RS01890 PF03401 Tripartite tricarboxylate transporter family receptor NEJAP_RS01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS01895 PF03466 LysR substrate binding domain NEJAP_RS01900 PF00474 Sodium:solute symporter family NEJAP_RS01905 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NEJAP_RS01905 PF14850 DNA-binding domain of Proline dehydrogenase NEJAP_RS01905 PF01619 Proline dehydrogenase NEJAP_RS01905 PF00171 Aldehyde dehydrogenase family NEJAP_RS01910 PF14850 DNA-binding domain of Proline dehydrogenase NEJAP_RS01910 PF01619 Proline dehydrogenase NEJAP_RS01910 PF00171 Aldehyde dehydrogenase family NEJAP_RS01910 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NEJAP_RS01915 PF00731 AIR carboxylase NEJAP_RS01920 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NEJAP_RS01920 PF02222 ATP-grasp domain NEJAP_RS01925 PF12833 Helix-turn-helix domain NEJAP_RS01930 PF01208 Uroporphyrinogen decarboxylase (URO-D) NEJAP_RS01935 PF00484 Carbonic anhydrase NEJAP_RS01940 PF01053 Cys/Met metabolism PLP-dependent enzyme NEJAP_RS01945 PF18073 Rubredoxin metal binding domain NEJAP_RS01950 PF07238 PilZ domain NEJAP_RS01955 PF00563 EAL domain NEJAP_RS01955 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS01955 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS01960 PF00005 ABC transporter NEJAP_RS01960 PF12848 ABC transporter NEJAP_RS01970 PF00464 Serine hydroxymethyltransferase NEJAP_RS01975 PF03477 ATP cone domain NEJAP_RS01980 PF01872 RibD C-terminal domain NEJAP_RS01980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NEJAP_RS01985 PF00677 Lumazine binding domain NEJAP_RS01990 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NEJAP_RS01990 PF00925 GTP cyclohydrolase II NEJAP_RS01995 PF00885 6,7-dimethyl-8-ribityllumazine synthase NEJAP_RS02000 PF01029 NusB family NEJAP_RS02005 PF00586 AIR synthase related protein, N-terminal domain NEJAP_RS02005 PF02769 AIR synthase related protein, C-terminal domain NEJAP_RS02010 PF04608 Phosphatidylglycerophosphatase A NEJAP_RS02025 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS02025 PF00072 Response regulator receiver domain NEJAP_RS02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS02035 PF00925 GTP cyclohydrolase II NEJAP_RS02040 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS02040 PF00563 EAL domain NEJAP_RS02040 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS02065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NEJAP_RS02065 PF02779 Transketolase, pyrimidine binding domain NEJAP_RS02065 PF02780 Transketolase, C-terminal domain NEJAP_RS02070 PF00348 Polyprenyl synthetase NEJAP_RS02075 PF02609 Exonuclease VII small subunit NEJAP_RS02080 PF01618 MotA/TolQ/ExbB proton channel family NEJAP_RS02085 PF00691 OmpA family NEJAP_RS02085 PF13677 Membrane MotB of proton-channel complex MotA/MotB NEJAP_RS02090 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NEJAP_RS02105 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS02115 PF00005 ABC transporter NEJAP_RS02115 PF12399 Branched-chain amino acid ATP-binding cassette transporter NEJAP_RS02120 PF00005 ABC transporter NEJAP_RS02125 PF01774 UreD urease accessory protein NEJAP_RS02130 PF00547 Urease, gamma subunit NEJAP_RS02135 PF00699 Urease beta subunit NEJAP_RS02140 PF00449 Urease alpha-subunit, N-terminal domain NEJAP_RS02140 PF01979 Amidohydrolase family NEJAP_RS02145 PF02814 UreE urease accessory protein, N-terminal domain NEJAP_RS02145 PF05194 UreE urease accessory protein, C-terminal domain NEJAP_RS02155 PF01730 UreF NEJAP_RS02160 PF02492 CobW/HypB/UreG, nucleotide-binding domain NEJAP_RS02165 PF05872 Bacterial protein of unknown function (DUF853) NEJAP_RS02170 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS02175 PF00534 Glycosyl transferases group 1 NEJAP_RS02175 PF13439 Glycosyltransferase Family 4 NEJAP_RS02180 PF00005 ABC transporter NEJAP_RS02180 PF03459 TOBE domain NEJAP_RS02185 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS02200 PF00072 Response regulator receiver domain NEJAP_RS02200 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS02205 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS02205 PF13417 Glutathione S-transferase, N-terminal domain NEJAP_RS02225 PF07995 Glucose / Sorbosone dehydrogenase NEJAP_RS02230 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS02235 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS02245 PF08402 TOBE domain NEJAP_RS02245 PF00005 ABC transporter NEJAP_RS02250 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NEJAP_RS02255 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NEJAP_RS02290 PF01668 SmpB protein NEJAP_RS02295 PF00209 Sodium:neurotransmitter symporter family NEJAP_RS02300 PF03364 Polyketide cyclase / dehydrase and lipid transport NEJAP_RS02305 PF03658 RnfH family Ubiquitin NEJAP_RS02310 PF04355 SmpA / OmlA family NEJAP_RS02315 PF01475 Ferric uptake regulator family NEJAP_RS02320 PF02463 RecF/RecN/SMC N terminal domain NEJAP_RS02325 PF01025 GrpE NEJAP_RS02330 PF00012 Hsp70 protein NEJAP_RS02335 PF00684 DnaJ central domain NEJAP_RS02335 PF01556 DnaJ C terminal domain NEJAP_RS02335 PF00226 DnaJ domain NEJAP_RS02340 PF06426 Serine acetyltransferase, N-terminal NEJAP_RS02340 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS02345 PF01113 Dihydrodipicolinate reductase, N-terminus NEJAP_RS02345 PF05173 Dihydrodipicolinate reductase, C-terminus NEJAP_RS02350 PF11944 Protein of unknown function (DUF3461) NEJAP_RS02360 PF01784 NIF3 (NGG1p interacting factor 3) NEJAP_RS02365 PF02874 ATP synthase alpha/beta family, beta-barrel domain NEJAP_RS02365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS02370 PF01813 ATP synthase subunit D NEJAP_RS02395 PF16886 ATPsynthase alpha/beta subunit N-term extension NEJAP_RS02395 PF02874 ATP synthase alpha/beta family, beta-barrel domain NEJAP_RS02395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS02400 PF00563 EAL domain NEJAP_RS02400 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS02400 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS02410 PF00293 NUDIX domain NEJAP_RS02415 PF00293 NUDIX domain NEJAP_RS02425 PF03471 Transporter associated domain NEJAP_RS02425 PF01595 Cyclin M transmembrane N-terminal domain NEJAP_RS02425 PF00571 CBS domain NEJAP_RS02430 PF01578 Cytochrome C assembly protein NEJAP_RS02435 PF02881 SRP54-type protein, helical bundle domain NEJAP_RS02435 PF00448 SRP54-type protein, GTPase domain NEJAP_RS02435 PF02978 Signal peptide binding domain NEJAP_RS02440 PF00886 Ribosomal protein S16 NEJAP_RS02445 PF01782 RimM N-terminal domain NEJAP_RS02445 PF05239 PRC-barrel domain NEJAP_RS02450 PF01746 tRNA (Guanine-1)-methyltransferase NEJAP_RS02455 PF01245 Ribosomal protein L19 NEJAP_RS02465 PF02899 Phage integrase, N-terminal SAM-like domain NEJAP_RS02465 PF00589 Phage integrase family NEJAP_RS02470 PF10411 Disulfide bond isomerase protein N-terminus NEJAP_RS02470 PF13098 Thioredoxin-like domain NEJAP_RS02475 PF01842 ACT domain NEJAP_RS02475 PF00742 Homoserine dehydrogenase NEJAP_RS02475 PF03447 Homoserine dehydrogenase, NAD binding domain NEJAP_RS02480 PF14821 Threonine synthase N terminus NEJAP_RS02480 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS02485 PF01368 DHH family NEJAP_RS02485 PF02272 DHHA1 domain NEJAP_RS02485 PF17768 RecJ OB domain NEJAP_RS02495 PF01261 Xylose isomerase-like TIM barrel NEJAP_RS02505 PF00563 EAL domain NEJAP_RS02505 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS02505 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS02510 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS02510 PF00563 EAL domain NEJAP_RS02515 PF00293 NUDIX domain NEJAP_RS02520 PF06853 Protein of unknown function (DUF1249) NEJAP_RS02525 PF00149 Calcineurin-like phosphoesterase NEJAP_RS02530 PF05728 Uncharacterised protein family (UPF0227) NEJAP_RS02535 PF00204 DNA gyrase B NEJAP_RS02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS02535 PF01751 Toprim domain NEJAP_RS02535 PF00986 DNA gyrase B subunit, carboxyl terminus NEJAP_RS02540 PF00521 DNA gyrase/topoisomerase IV, subunit A NEJAP_RS02540 PF03989 DNA gyrase C-terminal domain, beta-propeller NEJAP_RS02550 PF00171 Aldehyde dehydrogenase family NEJAP_RS02555 PF01467 Cytidylyltransferase-like NEJAP_RS02565 PF02590 Predicted SPOUT methyltransferase NEJAP_RS02570 PF03717 Penicillin-binding Protein dimerisation domain NEJAP_RS02570 PF00905 Penicillin binding protein transpeptidase domain NEJAP_RS02575 PF01098 Cell cycle protein NEJAP_RS02580 PF13406 Transglycosylase SLT domain NEJAP_RS02585 PF03330 Lytic transglycolase NEJAP_RS02585 PF05036 Sporulation related domain NEJAP_RS02590 PF07943 Penicillin-binding protein 5, C-terminal domain NEJAP_RS02590 PF00768 D-alanyl-D-alanine carboxypeptidase NEJAP_RS02595 PF01063 Amino-transferase class IV NEJAP_RS02600 PF04359 Protein of unknown function (DUF493) NEJAP_RS02605 PF03099 Biotin/lipoate A/B protein ligase family NEJAP_RS02610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NEJAP_RS02610 PF04055 Radical SAM superfamily NEJAP_RS02635 PF08264 Anticodon-binding domain of tRNA NEJAP_RS02635 PF00133 tRNA synthetases class I (I, L, M and V) NEJAP_RS02635 PF13603 Leucyl-tRNA synthetase, Domain 2 NEJAP_RS02650 PF01259 SAICAR synthetase NEJAP_RS02660 PF00270 DEAD/DEAH box helicase NEJAP_RS02660 PF00271 Helicase conserved C-terminal domain NEJAP_RS02665 PF03475 3-alpha domain NEJAP_RS02665 PF03473 MOSC domain NEJAP_RS02680 PF01371 Trp repressor protein NEJAP_RS02685 PF04715 Anthranilate synthase component I, N terminal region NEJAP_RS02685 PF00425 chorismate binding enzyme NEJAP_RS02690 PF00117 Glutamine amidotransferase class-I NEJAP_RS02695 PF00795 Carbon-nitrogen hydrolase NEJAP_RS02700 PF03471 Transporter associated domain NEJAP_RS02700 PF00571 CBS domain NEJAP_RS02705 PF02130 Uncharacterized protein family UPF0054 NEJAP_RS02710 PF02562 PhoH-like protein NEJAP_RS02715 PF01938 TRAM domain NEJAP_RS02715 PF04055 Radical SAM superfamily NEJAP_RS02715 PF00919 Uncharacterized protein family UPF0004 NEJAP_RS02725 PF04055 Radical SAM superfamily NEJAP_RS02730 PF08207 Elongation factor P (EF-P) KOW-like domain NEJAP_RS02730 PF09285 Elongation factor P, C-terminal NEJAP_RS02730 PF01132 Elongation factor P (EF-P) OB domain NEJAP_RS02745 PF00152 tRNA synthetases class II (D, K and N) NEJAP_RS02750 PF00155 Aminotransferase class I and II NEJAP_RS02755 PF00682 HMGL-like NEJAP_RS02755 PF08502 LeuA allosteric (dimerisation) domain NEJAP_RS02765 PF00583 Acetyltransferase (GNAT) family NEJAP_RS02770 PF00563 EAL domain NEJAP_RS02770 PF00360 Phytochrome region NEJAP_RS02770 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS02770 PF01590 GAF domain NEJAP_RS02775 PF00682 HMGL-like NEJAP_RS02775 PF08502 LeuA allosteric (dimerisation) domain NEJAP_RS02780 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS02790 PF00072 Response regulator receiver domain NEJAP_RS02795 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS02800 PF01042 Endoribonuclease L-PSP NEJAP_RS02805 PF02028 BCCT, betaine/carnitine/choline family transporter NEJAP_RS02810 PF01244 Membrane dipeptidase (Peptidase family M19) NEJAP_RS02815 PF00171 Aldehyde dehydrogenase family NEJAP_RS02820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS02820 PF03466 LysR substrate binding domain NEJAP_RS02855 PF03144 Elongation factor Tu domain 2 NEJAP_RS02855 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS02855 PF16658 Class II release factor RF3, C-terminal domain NEJAP_RS02860 PF01026 TatD related DNase NEJAP_RS02870 PF00109 Beta-ketoacyl synthase, N-terminal domain NEJAP_RS02870 PF02801 Beta-ketoacyl synthase, C-terminal domain NEJAP_RS02875 PF00691 OmpA family NEJAP_RS02875 PF13488 Glycine zipper NEJAP_RS02880 PF06005 Cell division protein ZapB NEJAP_RS02905 PF08335 GlnD PII-uridylyltransferase NEJAP_RS02905 PF01842 ACT domain NEJAP_RS02905 PF01909 Nucleotidyltransferase domain NEJAP_RS02905 PF01966 HD domain NEJAP_RS02910 PF00557 Metallopeptidase family M24 NEJAP_RS02915 PF00318 Ribosomal protein S2 NEJAP_RS02920 PF00889 Elongation factor TS NEJAP_RS02925 PF00696 Amino acid kinase family NEJAP_RS02930 PF01765 Ribosome recycling factor NEJAP_RS02935 PF01255 Putative undecaprenyl diphosphate synthase NEJAP_RS02945 PF02163 Peptidase family M50 NEJAP_RS02945 PF13180 PDZ domain NEJAP_RS02945 PF17820 PDZ domain NEJAP_RS02950 PF07244 Surface antigen variable number repeat NEJAP_RS02950 PF01103 Surface antigen NEJAP_RS02960 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS02960 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NEJAP_RS02965 PF07977 FabA-like domain NEJAP_RS02970 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS02970 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NEJAP_RS02980 PF01351 Ribonuclease HII NEJAP_RS02985 PF07733 Bacterial DNA polymerase III alpha NTPase domain NEJAP_RS02985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NEJAP_RS02985 PF14579 Helix-hairpin-helix motif NEJAP_RS02985 PF02811 PHP domain NEJAP_RS02985 PF01336 OB-fold nucleic acid binding domain NEJAP_RS02990 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NEJAP_RS02995 PF11734 TilS substrate C-terminal domain NEJAP_RS02995 PF09179 TilS substrate binding domain NEJAP_RS02995 PF01171 PP-loop family NEJAP_RS03000 PF06418 CTP synthase N-terminus NEJAP_RS03000 PF00117 Glutamine amidotransferase class-I NEJAP_RS03005 PF03952 Enolase, N-terminal domain NEJAP_RS03005 PF00113 Enolase, C-terminal TIM barrel domain NEJAP_RS03010 PF04977 Septum formation initiator NEJAP_RS03015 PF01142 tRNA pseudouridine synthase D (TruD) NEJAP_RS03020 PF01975 Survival protein SurE NEJAP_RS03035 PF01476 LysM domain NEJAP_RS03035 PF01551 Peptidase family M23 NEJAP_RS03040 PF04542 Sigma-70 region 2 NEJAP_RS03040 PF00140 Sigma-70 factor, region 1.2 NEJAP_RS03040 PF04545 Sigma-70, region 4 NEJAP_RS03040 PF04539 Sigma-70 region 3 NEJAP_RS03045 PF11953 Domain of unknown function (DUF3470) NEJAP_RS03045 PF00037 4Fe-4S binding domain NEJAP_RS03050 PF05192 MutS domain III NEJAP_RS03050 PF05188 MutS domain II NEJAP_RS03050 PF00488 MutS domain V NEJAP_RS03050 PF01624 MutS domain I NEJAP_RS03050 PF05190 MutS family domain IV NEJAP_RS03055 PF00464 Serine hydroxymethyltransferase NEJAP_RS03060 PF01266 FAD dependent oxidoreductase NEJAP_RS03070 PF17806 Sarcosine oxidase A3 domain NEJAP_RS03070 PF01571 Aminomethyltransferase folate-binding domain NEJAP_RS03070 PF08669 Glycine cleavage T-protein C-terminal barrel domain NEJAP_RS03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS03075 PF04268 Sarcosine oxidase, gamma subunit family NEJAP_RS03080 PF00551 Formyl transferase NEJAP_RS03085 PF12833 Helix-turn-helix domain NEJAP_RS03090 PF03553 Na+/H+ antiporter family NEJAP_RS03095 PF17149 Periplasmic sensor domain found in signal transduction proteins NEJAP_RS03095 PF01627 Hpt domain NEJAP_RS03095 PF00672 HAMP domain NEJAP_RS03095 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS03095 PF00072 Response regulator receiver domain NEJAP_RS03105 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS03105 PF00072 Response regulator receiver domain NEJAP_RS03110 PF01757 Acyltransferase family NEJAP_RS03115 PF03313 Serine dehydratase alpha chain NEJAP_RS03115 PF03315 Serine dehydratase beta chain NEJAP_RS03120 PF01144 Coenzyme A transferase NEJAP_RS03125 PF01144 Coenzyme A transferase NEJAP_RS03130 PF00588 SpoU rRNA Methylase family NEJAP_RS03130 PF12105 SpoU, rRNA methylase, C-terminal NEJAP_RS03135 PF03466 LysR substrate binding domain NEJAP_RS03135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS03140 PF00491 Arginase family NEJAP_RS03145 PF00171 Aldehyde dehydrogenase family NEJAP_RS03150 PF00072 Response regulator receiver domain NEJAP_RS03150 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS03155 PF00202 Aminotransferase class-III NEJAP_RS03165 PF00120 Glutamine synthetase, catalytic domain NEJAP_RS03170 PF13416 Bacterial extracellular solute-binding protein NEJAP_RS03175 PF08402 TOBE domain NEJAP_RS03175 PF00005 ABC transporter NEJAP_RS03180 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS03185 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS03190 PF02540 NAD synthase NEJAP_RS03190 PF00958 GMP synthase C terminal domain NEJAP_RS03190 PF00117 Glutamine amidotransferase class-I NEJAP_RS03200 PF04299 Putative FMN-binding domain NEJAP_RS03205 PF01810 LysE type translocator NEJAP_RS03215 PF00120 Glutamine synthetase, catalytic domain NEJAP_RS03220 PF01266 FAD dependent oxidoreductase NEJAP_RS03225 PF00202 Aminotransferase class-III NEJAP_RS03230 PF00171 Aldehyde dehydrogenase family NEJAP_RS03240 PF03062 MBOAT, membrane-bound O-acyltransferase family NEJAP_RS03245 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS03245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS03255 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS03260 PF03466 LysR substrate binding domain NEJAP_RS03275 PF03553 Na+/H+ antiporter family NEJAP_RS03280 PF01266 FAD dependent oxidoreductase NEJAP_RS03285 PF03466 LysR substrate binding domain NEJAP_RS03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS03290 PF00171 Aldehyde dehydrogenase family NEJAP_RS03295 PF00202 Aminotransferase class-III NEJAP_RS03300 PF02464 Competence-damaged protein NEJAP_RS03305 PF00154 recA bacterial DNA recombination protein NEJAP_RS03310 PF02631 RecX family NEJAP_RS03315 PF01411 tRNA synthetases class II (A) NEJAP_RS03315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NEJAP_RS03315 PF02272 DHHA1 domain NEJAP_RS03320 PF01842 ACT domain NEJAP_RS03320 PF13840 ACT domain NEJAP_RS03320 PF00696 Amino acid kinase family NEJAP_RS03325 PF02599 Global regulator protein family NEJAP_RS03350 PF02926 THUMP domain NEJAP_RS03350 PF02568 Thiamine biosynthesis protein (ThiI) NEJAP_RS03355 PF04277 Oxaloacetate decarboxylase, gamma chain NEJAP_RS03360 PF00682 HMGL-like NEJAP_RS03360 PF02436 Conserved carboxylase domain NEJAP_RS03360 PF00364 Biotin-requiring enzyme NEJAP_RS03365 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NEJAP_RS03370 PF00850 Histone deacetylase domain NEJAP_RS03380 PF02830 V4R domain NEJAP_RS03380 PF00158 Sigma-54 interaction domain NEJAP_RS03380 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS03380 PF06505 Activator of aromatic catabolism NEJAP_RS03385 PF06099 Phenol hydroxylase subunit NEJAP_RS03390 PF02332 Methane/Phenol/Toluene Hydroxylase NEJAP_RS03395 PF02406 MmoB/DmpM family NEJAP_RS03400 PF04945 YHS domain NEJAP_RS03400 PF02332 Methane/Phenol/Toluene Hydroxylase NEJAP_RS03410 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS03410 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS03410 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS03415 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS03420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NEJAP_RS03425 PF00171 Aldehyde dehydrogenase family NEJAP_RS03435 PF01118 Semialdehyde dehydrogenase, NAD binding domain NEJAP_RS03435 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NEJAP_RS03440 PF00682 HMGL-like NEJAP_RS03440 PF07836 DmpG-like communication domain NEJAP_RS03450 PF01361 Tautomerase enzyme NEJAP_RS03485 PF04316 Anti-sigma-28 factor, FlgM NEJAP_RS03495 PF01584 CheW-like domain NEJAP_RS03495 PF00072 Response regulator receiver domain NEJAP_RS03500 PF03705 CheR methyltransferase, all-alpha domain NEJAP_RS03500 PF01739 CheR methyltransferase, SAM binding domain NEJAP_RS03505 PF00460 Flagella basal body rod protein NEJAP_RS03510 PF00460 Flagella basal body rod protein NEJAP_RS03510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NEJAP_RS03515 PF03963 Flagellar hook capping protein - N-terminal region NEJAP_RS03515 PF13860 FlgD Ig-like domain NEJAP_RS03515 PF13861 FlgD Tudor-like domain NEJAP_RS03520 PF07559 Flagellar basal body protein FlaE NEJAP_RS03520 PF00460 Flagella basal body rod protein NEJAP_RS03520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NEJAP_RS03525 PF00460 Flagella basal body rod protein NEJAP_RS03525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NEJAP_RS03530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NEJAP_RS03530 PF00460 Flagella basal body rod protein NEJAP_RS03535 PF02107 Flagellar L-ring protein NEJAP_RS03540 PF02119 Flagellar P-ring protein NEJAP_RS03545 PF10135 Rod binding protein NEJAP_RS03545 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NEJAP_RS03550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NEJAP_RS03550 PF07196 Flagellin hook IN motif NEJAP_RS03555 PF00669 Bacterial flagellin N-terminal helical region NEJAP_RS03565 PF00669 Bacterial flagellin N-terminal helical region NEJAP_RS03565 PF00700 Bacterial flagellin C-terminal helical region NEJAP_RS03575 PF07196 Flagellin hook IN motif NEJAP_RS03575 PF07195 Flagellar hook-associated protein 2 C-terminus NEJAP_RS03575 PF02465 Flagellar hook-associated protein 2 N-terminus NEJAP_RS03580 PF02561 Flagellar protein FliS NEJAP_RS03585 PF00158 Sigma-54 interaction domain NEJAP_RS03585 PF06490 Flagellar regulatory protein FleQ NEJAP_RS03585 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS03590 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS03590 PF13188 PAS domain NEJAP_RS03595 PF00158 Sigma-54 interaction domain NEJAP_RS03595 PF00072 Response regulator receiver domain NEJAP_RS03595 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS03600 PF00501 AMP-binding enzyme NEJAP_RS03600 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS03600 PF16177 Acetyl-coenzyme A synthetase N-terminus NEJAP_RS03605 PF00072 Response regulator receiver domain NEJAP_RS03605 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS03610 PF09456 RcsC Alpha-Beta-Loop (ABL) NEJAP_RS03610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS03610 PF00072 Response regulator receiver domain NEJAP_RS03610 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS03620 PF00474 Sodium:solute symporter family NEJAP_RS03635 PF02049 Flagellar hook-basal body complex protein FliE NEJAP_RS03640 PF01514 Secretory protein of YscJ/FliF family NEJAP_RS03640 PF08345 Flagellar M-ring protein C-terminal NEJAP_RS03645 PF01706 FliG C-terminal domain NEJAP_RS03645 PF14841 FliG middle domain NEJAP_RS03645 PF14842 FliG N-terminal domain NEJAP_RS03655 PF18269 T3SS EscN ATPase C-terminal domain NEJAP_RS03655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS03675 PF02154 Flagellar motor switch protein FliM NEJAP_RS03675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NEJAP_RS03680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NEJAP_RS03685 PF04347 Flagellar biosynthesis protein, FliO NEJAP_RS03690 PF00813 FliP family NEJAP_RS03695 PF01313 Bacterial export proteins, family 3 NEJAP_RS03700 PF01311 Bacterial export proteins, family 1 NEJAP_RS03705 PF01312 FlhB HrpN YscU SpaS Family NEJAP_RS03710 PF00771 FHIPEP family NEJAP_RS03715 PF00448 SRP54-type protein, GTPase domain NEJAP_RS03720 PF10609 NUBPL iron-transfer P-loop NTPase NEJAP_RS03725 PF04542 Sigma-70 region 2 NEJAP_RS03725 PF04539 Sigma-70 region 3 NEJAP_RS03725 PF04545 Sigma-70, region 4 NEJAP_RS03730 PF00072 Response regulator receiver domain NEJAP_RS03735 PF04344 Chemotaxis phosphatase, CheZ NEJAP_RS03740 PF02895 Signal transducing histidine kinase, homodimeric domain NEJAP_RS03740 PF01584 CheW-like domain NEJAP_RS03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS03740 PF00072 Response regulator receiver domain NEJAP_RS03740 PF01627 Hpt domain NEJAP_RS03745 PF01339 CheB methylesterase NEJAP_RS03745 PF00072 Response regulator receiver domain NEJAP_RS03750 PF13614 AAA domain NEJAP_RS03765 PF01312 FlhB HrpN YscU SpaS Family NEJAP_RS03775 PF00005 ABC transporter NEJAP_RS03780 PF03379 CcmB protein NEJAP_RS03785 PF01578 Cytochrome C assembly protein NEJAP_RS03795 PF03100 CcmE NEJAP_RS03800 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NEJAP_RS03800 PF01578 Cytochrome C assembly protein NEJAP_RS03810 PF03918 Cytochrome C biogenesis protein NEJAP_RS03820 PF04354 ZipA, C-terminal FtsZ-binding domain NEJAP_RS03820 PF04354 ZipA, C-terminal FtsZ-binding domain NEJAP_RS03825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NEJAP_RS03825 PF12826 Helix-hairpin-helix motif NEJAP_RS03825 PF03120 NAD-dependent DNA ligase OB-fold domain NEJAP_RS03825 PF01653 NAD-dependent DNA ligase adenylation domain NEJAP_RS03825 PF00533 BRCA1 C Terminus (BRCT) domain NEJAP_RS03830 PF06794 Uncharacterised protein family (UPF0270) NEJAP_RS03840 PF01266 FAD dependent oxidoreductase NEJAP_RS03840 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NEJAP_RS03845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NEJAP_RS03845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NEJAP_RS03845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NEJAP_RS03850 PF01370 NAD dependent epimerase/dehydratase family NEJAP_RS03865 PF00107 Zinc-binding dehydrogenase NEJAP_RS03865 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS03880 PF02397 Bacterial sugar transferase NEJAP_RS03885 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS03885 PF17836 PglD N-terminal domain NEJAP_RS03885 PF14602 Hexapeptide repeat of succinyl-transferase NEJAP_RS03890 PF01575 MaoC like domain NEJAP_RS03895 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NEJAP_RS03900 PF02719 Polysaccharide biosynthesis protein NEJAP_RS03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS03905 PF03466 LysR substrate binding domain NEJAP_RS03920 PF04546 Sigma-70, non-essential region NEJAP_RS03920 PF04542 Sigma-70 region 2 NEJAP_RS03920 PF04539 Sigma-70 region 3 NEJAP_RS03920 PF04545 Sigma-70, region 4 NEJAP_RS03920 PF00140 Sigma-70 factor, region 1.2 NEJAP_RS03920 PF03979 Sigma-70 factor, region 1.1 NEJAP_RS03925 PF10410 DnaB-helicase binding domain of primase NEJAP_RS03925 PF08275 DNA primase catalytic core, N-terminal domain NEJAP_RS03925 PF13662 Toprim domain NEJAP_RS03925 PF08278 DNA primase DnaG DnaB-binding NEJAP_RS03925 PF01807 CHC2 zinc finger NEJAP_RS03935 PF01165 Ribosomal protein S21 NEJAP_RS03940 PF00814 Glycoprotease family NEJAP_RS03945 PF02152 Dihydroneopterin aldolase NEJAP_RS03950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NEJAP_RS03955 PF01966 HD domain NEJAP_RS03955 PF12627 Probable RNA and SrmB- binding site of polymerase A NEJAP_RS03955 PF01743 Poly A polymerase head domain NEJAP_RS03960 PF00581 Rhodanese-like domain NEJAP_RS03965 PF00149 Calcineurin-like phosphoesterase NEJAP_RS03970 PF04379 ApaG domain NEJAP_RS03975 PF00398 Ribosomal RNA adenine dimethylase NEJAP_RS03980 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NEJAP_RS03985 PF09312 SurA N-terminal domain NEJAP_RS03985 PF00639 PPIC-type PPIASE domain NEJAP_RS03990 PF04453 LPS transport system D NEJAP_RS03990 PF03968 OstA-like protein NEJAP_RS03995 PF01636 Phosphotransferase enzyme family NEJAP_RS04000 PF00483 Nucleotidyl transferase NEJAP_RS04005 PF05099 Tellurite resistance protein TerB NEJAP_RS04005 PF00226 DnaJ domain NEJAP_RS04015 PF00834 Ribulose-phosphate 3 epimerase family NEJAP_RS04020 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS04035 PF13614 AAA domain NEJAP_RS04065 PF13439 Glycosyltransferase Family 4 NEJAP_RS04065 PF00534 Glycosyl transferases group 1 NEJAP_RS04070 PF00733 Asparagine synthase NEJAP_RS04070 PF13537 Glutamine amidotransferase domain NEJAP_RS04075 PF13439 Glycosyltransferase Family 4 NEJAP_RS04080 PF00534 Glycosyl transferases group 1 NEJAP_RS04080 PF13439 Glycosyltransferase Family 4 NEJAP_RS04150 PF06508 Queuosine biosynthesis protein QueC NEJAP_RS04170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NEJAP_RS04170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NEJAP_RS04175 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS04175 PF00501 AMP-binding enzyme NEJAP_RS04185 PF01451 Low molecular weight phosphotyrosine protein phosphatase NEJAP_RS04225 PF00899 ThiF family NEJAP_RS04235 PF02397 Bacterial sugar transferase NEJAP_RS04240 PF00072 Response regulator receiver domain NEJAP_RS04240 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS04240 PF00158 Sigma-54 interaction domain NEJAP_RS04245 PF01584 CheW-like domain NEJAP_RS04245 PF02895 Signal transducing histidine kinase, homodimeric domain NEJAP_RS04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS04245 PF01627 Hpt domain NEJAP_RS04275 PF13401 AAA domain NEJAP_RS04275 PF01471 Putative peptidoglycan binding domain NEJAP_RS04280 PF13401 AAA domain NEJAP_RS04280 PF01471 Putative peptidoglycan binding domain NEJAP_RS04285 PF07943 Penicillin-binding protein 5, C-terminal domain NEJAP_RS04285 PF00768 D-alanyl-D-alanine carboxypeptidase NEJAP_RS04290 PF00117 Glutamine amidotransferase class-I NEJAP_RS04295 PF00591 Glycosyl transferase family, a/b domain NEJAP_RS04295 PF02885 Glycosyl transferase family, helical bundle domain NEJAP_RS04300 PF00218 Indole-3-glycerol phosphate synthase NEJAP_RS04305 PF02566 OsmC-like protein NEJAP_RS04315 PF01250 Ribosomal protein S6 NEJAP_RS04320 PF01084 Ribosomal protein S18 NEJAP_RS04325 PF03948 Ribosomal protein L9, C-terminal domain NEJAP_RS04325 PF01281 Ribosomal protein L9, N-terminal domain NEJAP_RS04330 PF03796 DnaB-like helicase C terminal domain NEJAP_RS04330 PF00772 DnaB-like helicase N terminal domain NEJAP_RS04340 PF01209 ubiE/COQ5 methyltransferase family NEJAP_RS04345 PF00202 Aminotransferase class-III NEJAP_RS04355 PF01980 tRNA-methyltransferase O NEJAP_RS04355 PF18389 TrmO C-terminal domain NEJAP_RS04365 PF02690 Na+/Pi-cotransporter NEJAP_RS04370 PF00156 Phosphoribosyl transferase domain NEJAP_RS04375 PF04055 Radical SAM superfamily NEJAP_RS04375 PF06968 Biotin and Thiamin Synthesis associated domain NEJAP_RS04380 PF00155 Aminotransferase class I and II NEJAP_RS04385 PF00561 alpha/beta hydrolase fold NEJAP_RS04390 PF12697 Alpha/beta hydrolase family NEJAP_RS04390 PF08241 Methyltransferase domain NEJAP_RS04410 PF00561 alpha/beta hydrolase fold NEJAP_RS04415 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NEJAP_RS04415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS04420 PF08460 Bacterial SH3 domain NEJAP_RS04420 PF01551 Peptidase family M23 NEJAP_RS04425 PF02601 Exonuclease VII, large subunit NEJAP_RS04425 PF13742 OB-fold nucleic acid binding domain NEJAP_RS04430 PF00478 IMP dehydrogenase / GMP reductase domain NEJAP_RS04430 PF00571 CBS domain NEJAP_RS04435 PF00958 GMP synthase C terminal domain NEJAP_RS04435 PF00117 Glutamine amidotransferase class-I NEJAP_RS04435 PF02540 NAD synthase NEJAP_RS04440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NEJAP_RS04445 PF01464 Transglycosylase SLT domain NEJAP_RS04445 PF00497 Bacterial extracellular solute-binding proteins, family 3 NEJAP_RS04450 PF02769 AIR synthase related protein, C-terminal domain NEJAP_RS04450 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NEJAP_RS04450 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NEJAP_RS04465 PF01389 OmpA-like transmembrane domain NEJAP_RS04465 PF00691 OmpA family NEJAP_RS04470 PF03795 YCII-related domain NEJAP_RS04475 PF04279 Intracellular septation protein A NEJAP_RS04480 PF02811 PHP domain NEJAP_RS04485 PF01300 Telomere recombination NEJAP_RS04495 PF01479 S4 domain NEJAP_RS04495 PF00849 RNA pseudouridylate synthase NEJAP_RS04500 PF00106 short chain dehydrogenase NEJAP_RS04505 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS04515 PF00521 DNA gyrase/topoisomerase IV, subunit A NEJAP_RS04515 PF03989 DNA gyrase C-terminal domain, beta-propeller NEJAP_RS04520 PF00266 Aminotransferase class-V NEJAP_RS04525 PF01842 ACT domain NEJAP_RS04525 PF01817 Chorismate mutase type II NEJAP_RS04525 PF00800 Prephenate dehydratase NEJAP_RS04530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NEJAP_RS04535 PF02224 Cytidylate kinase NEJAP_RS04540 PF00575 S1 RNA binding domain NEJAP_RS04545 PF00216 Bacterial DNA-binding protein NEJAP_RS04555 PF18073 Rubredoxin metal binding domain NEJAP_RS04560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NEJAP_RS04565 PF00480 ROK family NEJAP_RS04580 PF02913 FAD linked oxidases, C-terminal domain NEJAP_RS04580 PF01565 FAD binding domain NEJAP_RS04590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS04600 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS04605 PF07729 FCD domain NEJAP_RS04605 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS04610 PF00456 Transketolase, thiamine diphosphate binding domain NEJAP_RS04610 PF17831 Pyruvate dehydrogenase E1 component middle domain NEJAP_RS04615 PF02817 e3 binding domain NEJAP_RS04615 PF00364 Biotin-requiring enzyme NEJAP_RS04615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NEJAP_RS04620 PF02350 UDP-N-acetylglucosamine 2-epimerase NEJAP_RS04625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NEJAP_RS04625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NEJAP_RS04625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NEJAP_RS04635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NEJAP_RS04635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NEJAP_RS04635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NEJAP_RS04650 PF02397 Bacterial sugar transferase NEJAP_RS04680 PF13439 Glycosyltransferase Family 4 NEJAP_RS04680 PF00534 Glycosyl transferases group 1 NEJAP_RS04690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NEJAP_RS04700 PF03808 Glycosyl transferase WecB/TagA/CpsF family NEJAP_RS04705 PF00483 Nucleotidyl transferase NEJAP_RS04705 PF01050 Mannose-6-phosphate isomerase NEJAP_RS04710 PF16363 GDP-mannose 4,6 dehydratase NEJAP_RS04715 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NEJAP_RS04715 PF10996 Beta-Casp domain NEJAP_RS04715 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS04725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NEJAP_RS04725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NEJAP_RS04725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NEJAP_RS04730 PF00342 Phosphoglucose isomerase NEJAP_RS04735 PF00483 Nucleotidyl transferase NEJAP_RS04750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NEJAP_RS04750 PF13807 G-rich domain on putative tyrosine kinase NEJAP_RS04750 PF02706 Chain length determinant protein NEJAP_RS04765 PF00994 Probable molybdopterin binding domain NEJAP_RS04770 PF01169 Uncharacterized protein family UPF0016 NEJAP_RS04775 PF03788 LrgA family NEJAP_RS04780 PF04172 LrgB-like family NEJAP_RS04785 PF03969 AFG1-like ATPase NEJAP_RS04790 PF00572 Ribosomal protein L13 NEJAP_RS04795 PF00380 Ribosomal protein S9/S16 NEJAP_RS04800 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NEJAP_RS04800 PF00355 Rieske [2Fe-2S] domain NEJAP_RS04805 PF00032 Cytochrome b(C-terminal)/b6/petD NEJAP_RS04805 PF00033 Cytochrome b/b6/petB NEJAP_RS04810 PF02167 Cytochrome C1 family NEJAP_RS04815 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS04815 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS04820 PF04386 Stringent starvation protein B NEJAP_RS04825 PF04972 BON domain NEJAP_RS04830 PF13580 SIS domain NEJAP_RS04835 PF02021 Uncharacterised protein family UPF0102 NEJAP_RS04840 PF04348 LppC putative lipoprotein NEJAP_RS04845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NEJAP_RS04865 PF02381 MraZ protein, putative antitoxin-like NEJAP_RS04870 PF01795 MraW methylase family NEJAP_RS04880 PF00905 Penicillin binding protein transpeptidase domain NEJAP_RS04880 PF03717 Penicillin-binding Protein dimerisation domain NEJAP_RS04885 PF08245 Mur ligase middle domain NEJAP_RS04885 PF02875 Mur ligase family, glutamate ligase domain NEJAP_RS04885 PF01225 Mur ligase family, catalytic domain NEJAP_RS04890 PF01225 Mur ligase family, catalytic domain NEJAP_RS04890 PF02875 Mur ligase family, glutamate ligase domain NEJAP_RS04890 PF08245 Mur ligase middle domain NEJAP_RS04895 PF00953 Glycosyl transferase family 4 NEJAP_RS04895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NEJAP_RS04905 PF01098 Cell cycle protein NEJAP_RS04910 PF04101 Glycosyltransferase family 28 C-terminal domain NEJAP_RS04910 PF03033 Glycosyltransferase family 28 N-terminal domain NEJAP_RS04915 PF08245 Mur ligase middle domain NEJAP_RS04915 PF01225 Mur ligase family, catalytic domain NEJAP_RS04915 PF02875 Mur ligase family, glutamate ligase domain NEJAP_RS04920 PF01820 D-ala D-ala ligase N-terminus NEJAP_RS04920 PF07478 D-ala D-ala ligase C-terminus NEJAP_RS04925 PF03799 Cell division protein FtsQ NEJAP_RS04925 PF08478 POTRA domain, FtsQ-type NEJAP_RS04930 PF02491 SHS2 domain inserted in FTSA NEJAP_RS04935 PF00091 Tubulin/FtsZ family, GTPase domain NEJAP_RS04935 PF12327 FtsZ family, C-terminal domain NEJAP_RS04940 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NEJAP_RS04945 PF02810 SEC-C motif NEJAP_RS04945 PF07517 SecA DEAD-like domain NEJAP_RS04945 PF01043 SecA preprotein cross-linking domain NEJAP_RS04945 PF07516 SecA Wing and Scaffold domain NEJAP_RS04950 PF01960 ArgJ family NEJAP_RS04955 PF00293 NUDIX domain NEJAP_RS04960 PF03884 DNA gyrase inhibitor YacG NEJAP_RS04965 PF01121 Dephospho-CoA kinase NEJAP_RS04970 PF06750 Bacterial Peptidase A24 N-terminal domain NEJAP_RS04970 PF01478 Type IV leader peptidase family NEJAP_RS04980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NEJAP_RS04980 PF00437 Type II/IV secretion system protein NEJAP_RS04985 PF07963 Prokaryotic N-terminal methylation motif NEJAP_RS04985 PF00114 Pilin (bacterial filament) NEJAP_RS05000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NEJAP_RS05000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NEJAP_RS05005 PF01510 N-acetylmuramoyl-L-alanine amidase NEJAP_RS05010 PF00005 ABC transporter NEJAP_RS05010 PF08402 TOBE domain NEJAP_RS05025 PF13416 Bacterial extracellular solute-binding protein NEJAP_RS05035 PF01554 MatE NEJAP_RS05040 PF00106 short chain dehydrogenase NEJAP_RS05050 PF02810 SEC-C motif NEJAP_RS05055 PF08411 Exonuclease C-terminal NEJAP_RS05055 PF00929 Exonuclease NEJAP_RS05065 PF00675 Insulinase (Peptidase family M16) NEJAP_RS05065 PF05193 Peptidase M16 inactive domain NEJAP_RS05065 PF16187 Middle or third domain of peptidase_M16 NEJAP_RS05090 PF03883 Peroxide stress protein YaaA NEJAP_RS05095 PF00579 tRNA synthetases class I (W and Y) NEJAP_RS05100 PF00581 Rhodanese-like domain NEJAP_RS05105 PF04261 Dyp-type peroxidase family NEJAP_RS05110 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS05110 PF00593 TonB dependent receptor NEJAP_RS05120 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS05125 PF00072 Response regulator receiver domain NEJAP_RS05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS05125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NEJAP_RS05125 PF00672 HAMP domain NEJAP_RS05125 PF01627 Hpt domain NEJAP_RS05125 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS05130 PF00072 Response regulator receiver domain NEJAP_RS05130 PF01627 Hpt domain NEJAP_RS05130 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS05130 PF00672 HAMP domain NEJAP_RS05130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NEJAP_RS05135 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS05135 PF00563 EAL domain NEJAP_RS05135 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS05165 PF03781 Sulfatase-modifying factor enzyme 1 NEJAP_RS05170 PF00793 DAHP synthetase I family NEJAP_RS05175 PF01243 Pyridoxamine 5'-phosphate oxidase NEJAP_RS05185 PF04011 LemA family NEJAP_RS05200 PF01590 GAF domain NEJAP_RS05200 PF00360 Phytochrome region NEJAP_RS05200 PF00563 EAL domain NEJAP_RS05200 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS05210 PF03477 ATP cone domain NEJAP_RS05210 PF02867 Ribonucleotide reductase, barrel domain NEJAP_RS05210 PF00317 Ribonucleotide reductase, all-alpha domain NEJAP_RS05215 PF00268 Ribonucleotide reductase, small chain NEJAP_RS05220 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS05225 PF00730 HhH-GPD superfamily base excision DNA repair protein NEJAP_RS05225 PF00633 Helix-hairpin-helix motif NEJAP_RS05225 PF10576 Iron-sulfur binding domain of endonuclease III NEJAP_RS05230 PF02508 Rnf-Nqr subunit, membrane protein NEJAP_RS05235 PF04205 FMN-binding domain NEJAP_RS05240 PF03116 NQR2, RnfD, RnfE family NEJAP_RS05245 PF13375 RnfC Barrel sandwich hybrid domain NEJAP_RS05245 PF10531 SLBB domain NEJAP_RS05245 PF13237 4Fe-4S dicluster domain NEJAP_RS05245 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NEJAP_RS05250 PF04060 Putative Fe-S cluster NEJAP_RS05255 PF02508 Rnf-Nqr subunit, membrane protein NEJAP_RS05260 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS05265 PF01507 Phosphoadenosine phosphosulfate reductase family NEJAP_RS05270 PF01925 Sulfite exporter TauE/SafE NEJAP_RS05275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NEJAP_RS05275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NEJAP_RS05285 PF01507 Phosphoadenosine phosphosulfate reductase family NEJAP_RS05290 PF14824 Sirohaem biosynthesis protein central NEJAP_RS05290 PF10414 Sirohaem synthase dimerisation region NEJAP_RS05290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NEJAP_RS05305 PF00230 Major intrinsic protein NEJAP_RS05335 PF03600 Citrate transporter NEJAP_RS05340 PF01541 GIY-YIG catalytic domain NEJAP_RS05350 PF00005 ABC transporter NEJAP_RS05350 PF02687 FtsX-like permease family NEJAP_RS05350 PF12704 MacB-like periplasmic core domain NEJAP_RS05355 PF02687 FtsX-like permease family NEJAP_RS05355 PF12704 MacB-like periplasmic core domain NEJAP_RS05355 PF00005 ABC transporter NEJAP_RS05365 PF00155 Aminotransferase class I and II NEJAP_RS05370 PF00795 Carbon-nitrogen hydrolase NEJAP_RS05380 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NEJAP_RS05400 PF14743 DNA ligase OB-like domain NEJAP_RS05400 PF01068 ATP dependent DNA ligase domain NEJAP_RS05410 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS05410 PF08448 PAS fold NEJAP_RS05440 PF08534 Redoxin NEJAP_RS05445 PF04264 YceI-like domain NEJAP_RS05450 PF01292 Prokaryotic cytochrome b561 NEJAP_RS05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS05455 PF03466 LysR substrate binding domain NEJAP_RS05465 PF18030 RimK PreATP-grasp domain NEJAP_RS05465 PF08443 RimK-like ATP-grasp domain NEJAP_RS05475 PF08443 RimK-like ATP-grasp domain NEJAP_RS05475 PF18030 RimK PreATP-grasp domain NEJAP_RS05515 PF00529 HlyD membrane-fusion protein of T1SS NEJAP_RS05515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS05520 PF00873 AcrB/AcrD/AcrF family NEJAP_RS05550 PF00679 Elongation factor G C-terminus NEJAP_RS05550 PF14492 Elongation Factor G, domain II NEJAP_RS05550 PF03764 Elongation factor G, domain IV NEJAP_RS05550 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS05550 PF03144 Elongation factor Tu domain 2 NEJAP_RS05560 PF12170 DNA polymerase III tau subunit V interacting with alpha NEJAP_RS05560 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NEJAP_RS05560 PF12169 DNA polymerase III subunits gamma and tau domain III NEJAP_RS05565 PF02575 YbaB/EbfC DNA-binding family NEJAP_RS05570 PF13662 Toprim domain NEJAP_RS05570 PF02132 RecR protein NEJAP_RS05575 PF00570 HRDC domain NEJAP_RS05575 PF01612 3'-5' exonuclease NEJAP_RS05580 PF05166 YcgL domain NEJAP_RS05585 PF03692 Putative zinc- or iron-chelating domain NEJAP_RS05590 PF00575 S1 RNA binding domain NEJAP_RS05600 PF00595 PDZ domain NEJAP_RS05600 PF11818 C-terminal domain of tail specific protease (DUF3340) NEJAP_RS05600 PF17804 Tail specific protease N-terminal domain NEJAP_RS05600 PF03572 Peptidase family S41 NEJAP_RS05605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NEJAP_RS05605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS05610 PF02127 Aminopeptidase I zinc metalloprotease (M18) NEJAP_RS05620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS05625 PF07726 ATPase family associated with various cellular activities (AAA) NEJAP_RS05625 PF17863 AAA lid domain NEJAP_RS05635 PF01841 Transglutaminase-like superfamily NEJAP_RS05635 PF13559 Domain of unknown function (DUF4129) NEJAP_RS05635 PF11992 Domain of unknown function (DUF3488) NEJAP_RS05645 PF02743 Cache domain NEJAP_RS05645 PF00672 HAMP domain NEJAP_RS05645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS05650 PF00072 Response regulator receiver domain NEJAP_RS05660 PF07690 Major Facilitator Superfamily NEJAP_RS05670 PF00391 PEP-utilising enzyme, mobile domain NEJAP_RS05670 PF05524 PEP-utilising enzyme, N-terminal NEJAP_RS05670 PF01590 GAF domain NEJAP_RS05670 PF02896 PEP-utilising enzyme, TIM barrel domain NEJAP_RS05680 PF17946 RecC C-terminal domain NEJAP_RS05685 PF12705 PD-(D/E)XK nuclease superfamily NEJAP_RS05685 PF13361 UvrD-like helicase C-terminal domain NEJAP_RS05685 PF00580 UvrD/REP helicase N-terminal domain NEJAP_RS05690 PF13538 UvrD-like helicase C-terminal domain NEJAP_RS05700 PF00462 Glutaredoxin NEJAP_RS05705 PF06039 Malate:quinone oxidoreductase (Mqo) NEJAP_RS05715 PF00924 Mechanosensitive ion channel NEJAP_RS05715 PF05552 Conserved TM helix NEJAP_RS05725 PF01809 Putative membrane protein insertion efficiency factor NEJAP_RS05730 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS05730 PF17152 Periplasmic sensor domain NEJAP_RS05735 PF13638 PIN domain NEJAP_RS05735 PF02562 PhoH-like protein NEJAP_RS05740 PF02146 Sir2 family NEJAP_RS05745 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NEJAP_RS05745 PF03641 Possible lysine decarboxylase NEJAP_RS05745 PF11892 Domain of unknown function (DUF3412) NEJAP_RS05750 PF00108 Thiolase, N-terminal domain NEJAP_RS05750 PF02803 Thiolase, C-terminal domain NEJAP_RS05755 PF04225 Opacity-associated protein A LysM-like domain NEJAP_RS05755 PF01551 Peptidase family M23 NEJAP_RS05765 PF13230 Glutamine amidotransferases class-II NEJAP_RS05770 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS05770 PF00501 AMP-binding enzyme NEJAP_RS05775 PF04408 Helicase associated domain (HA2) NEJAP_RS05775 PF00271 Helicase conserved C-terminal domain NEJAP_RS05775 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NEJAP_RS05775 PF00270 DEAD/DEAH box helicase NEJAP_RS05775 PF11898 Domain of unknown function (DUF3418) NEJAP_RS05780 PF13609 Gram-negative porin NEJAP_RS05800 PF00923 Transaldolase/Fructose-6-phosphate aldolase NEJAP_RS05805 PF01207 Dihydrouridine synthase (Dus) NEJAP_RS05815 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS05815 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS05815 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS05820 PF01883 Iron-sulfur cluster assembly protein NEJAP_RS05825 PF05138 Phenylacetic acid catabolic protein NEJAP_RS05830 PF06243 Phenylacetic acid degradation B NEJAP_RS05835 PF05138 Phenylacetic acid catabolic protein NEJAP_RS05845 PF04011 LemA family NEJAP_RS05865 PF02600 Disulfide bond formation protein DsbB NEJAP_RS05875 PF13617 YnbE-like lipoprotein NEJAP_RS05905 PF02646 RmuC family NEJAP_RS05920 PF06667 Phage shock protein B NEJAP_RS05925 PF04012 PspA/IM30 family NEJAP_RS05930 PF00158 Sigma-54 interaction domain NEJAP_RS05930 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS05935 PF02491 SHS2 domain inserted in FTSA NEJAP_RS05940 PF00091 Tubulin/FtsZ family, GTPase domain NEJAP_RS05940 PF12327 FtsZ family, C-terminal domain NEJAP_RS05945 PF03190 Protein of unknown function, DUF255 NEJAP_RS05965 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS05970 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS05975 PF03971 Monomeric isocitrate dehydrogenase NEJAP_RS05985 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS05985 PF00072 Response regulator receiver domain NEJAP_RS06010 PF12801 4Fe-4S binding domain NEJAP_RS06010 PF13746 4Fe-4S dicluster domain NEJAP_RS06010 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NEJAP_RS06015 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS06015 PF00155 Aminotransferase class I and II NEJAP_RS06030 PF01636 Phosphotransferase enzyme family NEJAP_RS06045 PF01219 Prokaryotic diacylglycerol kinase NEJAP_RS06050 PF01053 Cys/Met metabolism PLP-dependent enzyme NEJAP_RS06075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS06085 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS06090 PF01266 FAD dependent oxidoreductase NEJAP_RS06095 PF03466 LysR substrate binding domain NEJAP_RS06095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS06105 PF02627 Carboxymuconolactone decarboxylase family NEJAP_RS06110 PF03466 LysR substrate binding domain NEJAP_RS06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS06115 PF00581 Rhodanese-like domain NEJAP_RS06120 PF01568 Molydopterin dinucleotide binding domain NEJAP_RS06120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NEJAP_RS06120 PF00384 Molybdopterin oxidoreductase NEJAP_RS06120 PF04324 BFD-like [2Fe-2S] binding domain NEJAP_RS06140 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS06145 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS06155 PF01546 Peptidase family M20/M25/M40 NEJAP_RS06155 PF07687 Peptidase dimerisation domain NEJAP_RS06160 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS06165 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS06170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS06175 PF01321 Creatinase/Prolidase N-terminal domain NEJAP_RS06175 PF00557 Metallopeptidase family M24 NEJAP_RS06180 PF01323 DSBA-like thioredoxin domain NEJAP_RS06185 PF00672 HAMP domain NEJAP_RS06185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS06190 PF13806 Rieske-like [2Fe-2S] domain NEJAP_RS06195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NEJAP_RS06195 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS06195 PF18267 Rubredoxin NAD+ reductase C-terminal domain NEJAP_RS06195 PF04324 BFD-like [2Fe-2S] binding domain NEJAP_RS06195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NEJAP_RS06200 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS06200 PF18267 Rubredoxin NAD+ reductase C-terminal domain NEJAP_RS06200 PF04324 BFD-like [2Fe-2S] binding domain NEJAP_RS06200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NEJAP_RS06205 PF00069 Protein kinase domain NEJAP_RS06205 PF03793 PASTA domain NEJAP_RS06210 PF07690 Major Facilitator Superfamily NEJAP_RS06215 PF00072 Response regulator receiver domain NEJAP_RS06215 PF03861 ANTAR domain NEJAP_RS06220 PF00749 tRNA synthetases class I (E and Q), catalytic domain NEJAP_RS06240 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NEJAP_RS06245 PF02574 Homocysteine S-methyltransferase NEJAP_RS06250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS06250 PF00672 HAMP domain NEJAP_RS06255 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NEJAP_RS06255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NEJAP_RS06265 PF00355 Rieske [2Fe-2S] domain NEJAP_RS06265 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NEJAP_RS06270 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS06270 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS06270 PF00042 Globin NEJAP_RS06285 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS06285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NEJAP_RS06290 PF12833 Helix-turn-helix domain NEJAP_RS06290 PF01965 DJ-1/PfpI family NEJAP_RS06295 PF00155 Aminotransferase class I and II NEJAP_RS06305 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS06310 PF01464 Transglycosylase SLT domain NEJAP_RS06315 PF00563 EAL domain NEJAP_RS06315 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06315 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS06320 PF08448 PAS fold NEJAP_RS06320 PF08447 PAS fold NEJAP_RS06320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS06335 PF07690 Major Facilitator Superfamily NEJAP_RS06340 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS06350 PF11890 Domain of unknown function (DUF3410) NEJAP_RS06350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NEJAP_RS06350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NEJAP_RS06365 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06370 PF01740 STAS domain NEJAP_RS06370 PF00916 Sulfate permease family NEJAP_RS06375 PF01545 Cation efflux family NEJAP_RS06375 PF16916 Dimerisation domain of Zinc Transporter NEJAP_RS06380 PF01758 Sodium Bile acid symporter family NEJAP_RS06395 PF04381 Putative exonuclease, RdgC NEJAP_RS06400 PF00270 DEAD/DEAH box helicase NEJAP_RS06400 PF04408 Helicase associated domain (HA2) NEJAP_RS06400 PF08482 ATP-dependent helicase C-terminal NEJAP_RS06400 PF00271 Helicase conserved C-terminal domain NEJAP_RS06420 PF00156 Phosphoribosyl transferase domain NEJAP_RS06425 PF00027 Cyclic nucleotide-binding domain NEJAP_RS06425 PF00325 Bacterial regulatory proteins, crp family NEJAP_RS06430 PF06969 HemN C-terminal domain NEJAP_RS06430 PF04055 Radical SAM superfamily NEJAP_RS06445 PF00403 Heavy-metal-associated domain NEJAP_RS06455 PF12801 4Fe-4S binding domain NEJAP_RS06455 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NEJAP_RS06455 PF13746 4Fe-4S dicluster domain NEJAP_RS06460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NEJAP_RS06460 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NEJAP_RS06475 PF00115 Cytochrome C and Quinol oxidase polypeptide I NEJAP_RS06490 PF01206 Sulfurtransferase TusA NEJAP_RS06500 PF00085 Thioredoxin NEJAP_RS06505 PF10442 FIST C domain NEJAP_RS06505 PF08495 FIST N domain NEJAP_RS06505 PF00563 EAL domain NEJAP_RS06505 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06520 PF01554 MatE NEJAP_RS06525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NEJAP_RS06530 PF17200 Single Cache domain 2 NEJAP_RS06530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS06530 PF00672 HAMP domain NEJAP_RS06545 PF01026 TatD related DNase NEJAP_RS06550 PF01464 Transglycosylase SLT domain NEJAP_RS06550 PF14718 Soluble lytic murein transglycosylase L domain NEJAP_RS06560 PF07670 Nucleoside recognition NEJAP_RS06565 PF12848 ABC transporter NEJAP_RS06565 PF00005 ABC transporter NEJAP_RS06565 PF16326 ABC transporter C-terminal domain NEJAP_RS06570 PF00582 Universal stress protein family NEJAP_RS06585 PF05971 RNA methyltransferase NEJAP_RS06590 PF16124 RecQ zinc-binding NEJAP_RS06590 PF09382 RQC domain NEJAP_RS06590 PF00271 Helicase conserved C-terminal domain NEJAP_RS06590 PF00270 DEAD/DEAH box helicase NEJAP_RS06590 PF00570 HRDC domain NEJAP_RS06595 PF00072 Response regulator receiver domain NEJAP_RS06595 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06605 PF08362 YcdC-like protein, C-terminal region NEJAP_RS06605 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS06610 PF04115 Ureidoglycolate lyase NEJAP_RS06615 PF03561 Allantoicase repeat NEJAP_RS06620 PF01014 Uricase NEJAP_RS06620 PF09349 OHCU decarboxylase NEJAP_RS06630 PF00576 HIUase/Transthyretin family NEJAP_RS06635 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS06635 PF07729 FCD domain NEJAP_RS06640 PF00885 6,7-dimethyl-8-ribityllumazine synthase NEJAP_RS06645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NEJAP_RS06655 PF00563 EAL domain NEJAP_RS06655 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS06655 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06665 PF00999 Sodium/hydrogen exchanger family NEJAP_RS06675 PF00034 Cytochrome c NEJAP_RS06710 PF01979 Amidohydrolase family NEJAP_RS06720 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NEJAP_RS06720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NEJAP_RS06725 PF03450 CO dehydrogenase flavoprotein C-terminal domain NEJAP_RS06725 PF00941 FAD binding domain in molybdopterin dehydrogenase NEJAP_RS06730 PF00155 Aminotransferase class I and II NEJAP_RS06730 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS06740 PF02567 Phenazine biosynthesis-like protein NEJAP_RS06750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NEJAP_RS06750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NEJAP_RS06755 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS06755 PF00563 EAL domain NEJAP_RS06755 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06765 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS06765 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS06765 PF00563 EAL domain NEJAP_RS06775 PF12706 Beta-lactamase superfamily domain NEJAP_RS06785 PF07969 Amidohydrolase family NEJAP_RS06790 PF00005 ABC transporter NEJAP_RS06795 PF00005 ABC transporter NEJAP_RS06800 PF06007 Phosphonate metabolism protein PhnJ NEJAP_RS06805 PF05861 Bacterial phosphonate metabolism protein (PhnI) NEJAP_RS06810 PF05845 Bacterial phosphonate metabolism protein (PhnH) NEJAP_RS06815 PF06754 Phosphonate metabolism protein PhnG NEJAP_RS06820 PF07702 UTRA domain NEJAP_RS06820 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS06835 PF00005 ABC transporter NEJAP_RS06840 PF01235 Sodium:alanine symporter family NEJAP_RS06850 PF07690 Major Facilitator Superfamily NEJAP_RS06860 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS06865 PF00106 short chain dehydrogenase NEJAP_RS06870 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS06875 PF06965 Na+/H+ antiporter 1 NEJAP_RS06875 PF01343 Peptidase family S49 NEJAP_RS06880 PF02545 Maf-like protein NEJAP_RS06885 PF02620 Large ribosomal RNA subunit accumulation protein YceD NEJAP_RS06890 PF01783 Ribosomal L32p protein family NEJAP_RS06895 PF02504 Fatty acid synthesis protein NEJAP_RS06900 PF00698 Acyl transferase domain NEJAP_RS06910 PF00550 Phosphopantetheine attachment site NEJAP_RS06915 PF02801 Beta-ketoacyl synthase, C-terminal domain NEJAP_RS06915 PF00109 Beta-ketoacyl synthase, N-terminal domain NEJAP_RS06920 PF01063 Amino-transferase class IV NEJAP_RS06925 PF02618 YceG-like family NEJAP_RS06930 PF02223 Thymidylate kinase NEJAP_RS06935 PF09115 DNA polymerase III, delta subunit, C terminal NEJAP_RS06945 PF01026 TatD related DNase NEJAP_RS06955 PF00056 lactate/malate dehydrogenase, NAD binding domain NEJAP_RS06955 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NEJAP_RS06960 PF01584 CheW-like domain NEJAP_RS06965 PF04358 DsrC like protein NEJAP_RS06980 PF02635 DsrE/DsrF-like family NEJAP_RS06985 PF01027 Inhibitor of apoptosis-promoting Bax1 NEJAP_RS06990 PF00849 RNA pseudouridylate synthase NEJAP_RS06995 PF01048 Phosphorylase superfamily NEJAP_RS07000 PF00266 Aminotransferase class-V NEJAP_RS07005 PF00578 AhpC/TSA family NEJAP_RS07010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NEJAP_RS07010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NEJAP_RS07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS07025 PF03466 LysR substrate binding domain NEJAP_RS07040 PF08459 UvrC Helix-hairpin-helix N-terminal NEJAP_RS07040 PF02151 UvrB/uvrC motif NEJAP_RS07040 PF01541 GIY-YIG catalytic domain NEJAP_RS07045 PF01066 CDP-alcohol phosphatidyltransferase NEJAP_RS07060 PF18755 Restriction Enzyme Adenine Methylase Associated NEJAP_RS07060 PF01555 DNA methylase NEJAP_RS07180 PF01381 Helix-turn-helix NEJAP_RS07180 PF00717 Peptidase S24-like NEJAP_RS07290 PF03354 Phage Terminase NEJAP_RS07295 PF04860 Phage portal protein NEJAP_RS07385 PF13464 Domain of unknown function (DUF4115) NEJAP_RS07450 PF00158 Sigma-54 interaction domain NEJAP_RS07450 PF00072 Response regulator receiver domain NEJAP_RS07485 PF01434 Peptidase family M41 NEJAP_RS07485 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS07485 PF17862 AAA+ lid domain NEJAP_RS07505 PF00082 Subtilase family NEJAP_RS07505 PF01483 Proprotein convertase P-domain NEJAP_RS07585 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS07585 PF00563 EAL domain NEJAP_RS07585 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS07590 PF05209 Septum formation inhibitor MinC, N-terminal domain NEJAP_RS07590 PF03775 Septum formation inhibitor MinC, C-terminal domain NEJAP_RS07595 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NEJAP_RS07600 PF03776 Septum formation topological specificity factor MinE NEJAP_RS07615 PF00330 Aconitase family (aconitate hydratase) NEJAP_RS07620 PF00694 Aconitase C-terminal domain NEJAP_RS07625 PF00180 Isocitrate/isopropylmalate dehydrogenase NEJAP_RS07630 PF01118 Semialdehyde dehydrogenase, NAD binding domain NEJAP_RS07630 PF02774 Semialdehyde dehydrogenase, dimerisation domain NEJAP_RS07635 PF02774 Semialdehyde dehydrogenase, dimerisation domain NEJAP_RS07635 PF01118 Semialdehyde dehydrogenase, NAD binding domain NEJAP_RS07645 PF01416 tRNA pseudouridine synthase NEJAP_RS07650 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NEJAP_RS07655 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS07660 PF00290 Tryptophan synthase alpha chain NEJAP_RS07665 PF17848 Acetyl-coA carboxylase zinc finger domain NEJAP_RS07665 PF01039 Carboxyl transferase domain NEJAP_RS07670 PF08245 Mur ligase middle domain NEJAP_RS07670 PF02875 Mur ligase family, glutamate ligase domain NEJAP_RS07680 PF02674 Colicin V production protein NEJAP_RS07685 PF00156 Phosphoribosyl transferase domain NEJAP_RS07690 PF01053 Cys/Met metabolism PLP-dependent enzyme NEJAP_RS07700 PF01207 Dihydrouridine synthase (Dus) NEJAP_RS07710 PF01875 Memo-like protein NEJAP_RS07725 PF01863 Protein of unknown function DUF45 NEJAP_RS07730 PF06062 Uncharacterised protein family (UPF0231) NEJAP_RS07740 PF00425 chorismate binding enzyme NEJAP_RS07740 PF04715 Anthranilate synthase component I, N terminal region NEJAP_RS07750 PF07729 FCD domain NEJAP_RS07750 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS07760 PF00285 Citrate synthase, C-terminal domain NEJAP_RS07765 PF00694 Aconitase C-terminal domain NEJAP_RS07765 PF00330 Aconitase family (aconitate hydratase) NEJAP_RS07770 PF04303 PrpF protein NEJAP_RS07775 PF00999 Sodium/hydrogen exchanger family NEJAP_RS07780 PF02881 SRP54-type protein, helical bundle domain NEJAP_RS07780 PF00448 SRP54-type protein, GTPase domain NEJAP_RS07785 PF07499 RuvA, C-terminal domain NEJAP_RS07785 PF01330 RuvA N terminal domain NEJAP_RS07790 PF05496 Holliday junction DNA helicase RuvB P-loop domain NEJAP_RS07790 PF05491 RuvB C-terminal winged helix domain NEJAP_RS07790 PF17864 RuvB AAA lid domain NEJAP_RS07800 PF01618 MotA/TolQ/ExbB proton channel family NEJAP_RS07805 PF02472 Biopolymer transport protein ExbD/TolR NEJAP_RS07815 PF07676 WD40-like Beta Propeller Repeat NEJAP_RS07815 PF04052 TolB amino-terminal domain NEJAP_RS07820 PF00691 OmpA family NEJAP_RS07825 PF16331 TolA binding protein trimerisation NEJAP_RS07825 PF13525 Outer membrane lipoprotein NEJAP_RS07830 PF06508 Queuosine biosynthesis protein QueC NEJAP_RS07835 PF02445 Quinolinate synthetase A protein NEJAP_RS07840 PF03649 Uncharacterised protein family (UPF0014) NEJAP_RS07845 PF05690 Thiazole biosynthesis protein ThiG NEJAP_RS07850 PF05690 Thiazole biosynthesis protein ThiG NEJAP_RS07850 PF02597 ThiS family NEJAP_RS07855 PF00202 Aminotransferase class-III NEJAP_RS07860 PF00155 Aminotransferase class I and II NEJAP_RS07860 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS07865 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NEJAP_RS07865 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NEJAP_RS07870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NEJAP_RS07870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NEJAP_RS07870 PF00205 Thiamine pyrophosphate enzyme, central domain NEJAP_RS07875 PF01515 Phosphate acetyl/butaryl transferase NEJAP_RS07885 PF00072 Response regulator receiver domain NEJAP_RS07885 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS07890 PF02110 Hydroxyethylthiazole kinase family NEJAP_RS07900 PF00582 Universal stress protein family NEJAP_RS07905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS07905 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS07910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS07910 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS07915 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS07925 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NEJAP_RS07925 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NEJAP_RS07935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS07940 PF00929 Exonuclease NEJAP_RS07940 PF02811 PHP domain NEJAP_RS07940 PF14579 Helix-hairpin-helix motif NEJAP_RS07940 PF07733 Bacterial DNA polymerase III alpha NTPase domain NEJAP_RS07940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NEJAP_RS07950 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS07950 PF00563 EAL domain NEJAP_RS07950 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS07955 PF02311 AraC-like ligand binding domain NEJAP_RS07955 PF12833 Helix-turn-helix domain NEJAP_RS07965 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS07965 PF00563 EAL domain NEJAP_RS07965 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS07980 PF01047 MarR family NEJAP_RS07990 PF00881 Nitroreductase family NEJAP_RS08020 PF01914 MarC family integral membrane protein NEJAP_RS08035 PF06224 Winged helix DNA-binding domain NEJAP_RS08040 PF03831 PhnA domain NEJAP_RS08040 PF08274 PhnA Zinc-Ribbon NEJAP_RS08060 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NEJAP_RS08065 PF00815 Histidinol dehydrogenase NEJAP_RS08070 PF03466 LysR substrate binding domain NEJAP_RS08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS08075 PF00282 Pyridoxal-dependent decarboxylase conserved domain NEJAP_RS08085 PF00155 Aminotransferase class I and II NEJAP_RS08085 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS08090 PF00732 GMC oxidoreductase NEJAP_RS08090 PF05199 GMC oxidoreductase NEJAP_RS08095 PF09339 IclR helix-turn-helix domain NEJAP_RS08095 PF01614 Bacterial transcriptional regulator NEJAP_RS08100 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS08110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS08115 PF00582 Universal stress protein family NEJAP_RS08120 PF04204 Homoserine O-succinyltransferase NEJAP_RS08125 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS08145 PF03401 Tripartite tricarboxylate transporter family receptor NEJAP_RS08150 PF00171 Aldehyde dehydrogenase family NEJAP_RS08155 PF00501 AMP-binding enzyme NEJAP_RS08155 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS08160 PF11944 Protein of unknown function (DUF3461) NEJAP_RS08175 PF00849 RNA pseudouridylate synthase NEJAP_RS08175 PF01479 S4 domain NEJAP_RS08210 PF11775 Cobalamin biosynthesis protein CobT VWA domain NEJAP_RS08210 PF06213 Cobalamin biosynthesis protein CobT NEJAP_RS08215 PF12556 Cobaltochelatase CobS subunit N terminal NEJAP_RS08215 PF08406 CbbQ/NirQ/NorQ C-terminal NEJAP_RS08215 PF07728 AAA domain (dynein-related subfamily) NEJAP_RS08220 PF01925 Sulfite exporter TauE/SafE NEJAP_RS08225 PF00916 Sulfate permease family NEJAP_RS08225 PF01740 STAS domain NEJAP_RS08230 PF01042 Endoribonuclease L-PSP NEJAP_RS08235 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS08250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS08255 PF00561 alpha/beta hydrolase fold NEJAP_RS08260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NEJAP_RS08260 PF01568 Molydopterin dinucleotide binding domain NEJAP_RS08260 PF00384 Molybdopterin oxidoreductase NEJAP_RS08265 PF13247 4Fe-4S dicluster domain NEJAP_RS08265 PF12800 4Fe-4S binding domain NEJAP_RS08275 PF00171 Aldehyde dehydrogenase family NEJAP_RS08300 PF01451 Low molecular weight phosphotyrosine protein phosphatase NEJAP_RS08305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NEJAP_RS08305 PF01565 FAD binding domain NEJAP_RS08310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS08310 PF17200 Single Cache domain 2 NEJAP_RS08310 PF00672 HAMP domain NEJAP_RS08315 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS08320 PF01131 DNA topoisomerase NEJAP_RS08320 PF01751 Toprim domain NEJAP_RS08325 PF00849 RNA pseudouridylate synthase NEJAP_RS08340 PF08272 Topoisomerase I zinc-ribbon-like NEJAP_RS08340 PF01396 Topoisomerase DNA binding C4 zinc finger NEJAP_RS08340 PF01751 Toprim domain NEJAP_RS08340 PF01131 DNA topoisomerase NEJAP_RS08360 PF00717 Peptidase S24-like NEJAP_RS08360 PF01726 LexA DNA binding domain NEJAP_RS08365 PF13307 Helicase C-terminal domain NEJAP_RS08365 PF06733 DEAD_2 NEJAP_RS08370 PF00270 DEAD/DEAH box helicase NEJAP_RS08370 PF00271 Helicase conserved C-terminal domain NEJAP_RS08380 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NEJAP_RS08380 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NEJAP_RS08390 PF12697 Alpha/beta hydrolase family NEJAP_RS08400 PF01734 Patatin-like phospholipase NEJAP_RS08405 PF01227 GTP cyclohydrolase I NEJAP_RS08415 PF05175 Methyltransferase small domain NEJAP_RS08420 PF01264 Chorismate synthase NEJAP_RS08425 PF17284 Spermidine synthase tetramerisation domain NEJAP_RS08430 PF00575 S1 RNA binding domain NEJAP_RS08430 PF10150 Ribonuclease E/G family NEJAP_RS08430 PF12111 Polyribonucleotide phosphorylase C terminal NEJAP_RS08435 PF00849 RNA pseudouridylate synthase NEJAP_RS08435 PF01479 S4 domain NEJAP_RS08445 PF03466 LysR substrate binding domain NEJAP_RS08445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS08455 PF00271 Helicase conserved C-terminal domain NEJAP_RS08455 PF04851 Type III restriction enzyme, res subunit NEJAP_RS08470 PF01209 ubiE/COQ5 methyltransferase family NEJAP_RS08480 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NEJAP_RS08490 PF01406 tRNA synthetases class I (C) catalytic domain NEJAP_RS08490 PF09190 DALR domain NEJAP_RS08495 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NEJAP_RS08495 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NEJAP_RS08505 PF00403 Heavy-metal-associated domain NEJAP_RS08510 PF13411 MerR HTH family regulatory protein NEJAP_RS08535 PF05697 Bacterial trigger factor protein (TF) NEJAP_RS08535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS08535 PF05698 Bacterial trigger factor protein (TF) C-terminus NEJAP_RS08540 PF00574 Clp protease NEJAP_RS08545 PF10431 C-terminal, D2-small domain, of ClpB protein NEJAP_RS08545 PF06689 ClpX C4-type zinc finger NEJAP_RS08545 PF07724 AAA domain (Cdc48 subfamily) NEJAP_RS08560 PF04228 Putative neutral zinc metallopeptidase NEJAP_RS08570 PF07152 YaeQ protein NEJAP_RS08575 PF00571 CBS domain NEJAP_RS08575 PF00478 IMP dehydrogenase / GMP reductase domain NEJAP_RS08585 PF00873 AcrB/AcrD/AcrF family NEJAP_RS08610 PF02600 Disulfide bond formation protein DsbB NEJAP_RS08625 PF00793 DAHP synthetase I family NEJAP_RS08630 PF11412 Disulphide bond corrector protein DsbC NEJAP_RS08630 PF02683 Cytochrome C biogenesis protein transmembrane region NEJAP_RS08645 PF13458 Periplasmic binding protein NEJAP_RS08665 PF01641 SelR domain NEJAP_RS08665 PF01625 Peptide methionine sulfoxide reductase NEJAP_RS08675 PF02678 Pirin NEJAP_RS08675 PF05726 Pirin C-terminal cupin domain NEJAP_RS08680 PF13409 Glutathione S-transferase, N-terminal domain NEJAP_RS08695 PF03880 DbpA RNA binding domain NEJAP_RS08695 PF00271 Helicase conserved C-terminal domain NEJAP_RS08695 PF00270 DEAD/DEAH box helicase NEJAP_RS08700 PF06965 Na+/H+ antiporter 1 NEJAP_RS08710 PF04545 Sigma-70, region 4 NEJAP_RS08710 PF04542 Sigma-70 region 2 NEJAP_RS08720 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS08720 PF00501 AMP-binding enzyme NEJAP_RS08725 PF00106 short chain dehydrogenase NEJAP_RS08730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS08730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS08730 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS08735 PF12833 Helix-turn-helix domain NEJAP_RS08740 PF00501 AMP-binding enzyme NEJAP_RS08740 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS08750 PF00682 HMGL-like NEJAP_RS08755 PF02785 Biotin carboxylase C-terminal domain NEJAP_RS08755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NEJAP_RS08755 PF18140 Propionyl-coenzyme A carboxylase BT domain NEJAP_RS08755 PF00289 Biotin carboxylase, N-terminal domain NEJAP_RS08755 PF00364 Biotin-requiring enzyme NEJAP_RS08760 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS08765 PF01039 Carboxyl transferase domain NEJAP_RS08770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS08770 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS08770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS08775 PF13411 MerR HTH family regulatory protein NEJAP_RS08780 PF00005 ABC transporter NEJAP_RS08780 PF12399 Branched-chain amino acid ATP-binding cassette transporter NEJAP_RS08785 PF00005 ABC transporter NEJAP_RS08795 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS08805 PF02803 Thiolase, C-terminal domain NEJAP_RS08805 PF00108 Thiolase, N-terminal domain NEJAP_RS08810 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS08810 PF00593 TonB dependent receptor NEJAP_RS08820 PF01144 Coenzyme A transferase NEJAP_RS08825 PF01144 Coenzyme A transferase NEJAP_RS08830 PF03466 LysR substrate binding domain NEJAP_RS08830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS08840 PF03641 Possible lysine decarboxylase NEJAP_RS08845 PF03547 Membrane transport protein NEJAP_RS08855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS08865 PF13476 AAA domain NEJAP_RS08870 PF12833 Helix-turn-helix domain NEJAP_RS08870 PF02311 AraC-like ligand binding domain NEJAP_RS08875 PF00171 Aldehyde dehydrogenase family NEJAP_RS08880 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS08880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS08880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS08885 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS08890 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS08895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NEJAP_RS08895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NEJAP_RS08900 PF00501 AMP-binding enzyme NEJAP_RS08900 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS08900 PF16177 Acetyl-coenzyme A synthetase N-terminus NEJAP_RS08910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS08910 PF00672 HAMP domain NEJAP_RS08910 PF12729 Four helix bundle sensory module for signal transduction NEJAP_RS08925 PF04237 YjbR NEJAP_RS08945 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS08945 PF08448 PAS fold NEJAP_RS08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS08945 PF13188 PAS domain NEJAP_RS08945 PF00072 Response regulator receiver domain NEJAP_RS08950 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS08950 PF00072 Response regulator receiver domain NEJAP_RS08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS08960 PF03466 LysR substrate binding domain NEJAP_RS08965 PF01565 FAD binding domain NEJAP_RS08965 PF02913 FAD linked oxidases, C-terminal domain NEJAP_RS08965 PF13183 4Fe-4S dicluster domain NEJAP_RS08975 PF03737 Aldolase/RraA NEJAP_RS08990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS08995 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS09000 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS09005 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NEJAP_RS09005 PF08666 SAF domain NEJAP_RS09010 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS09015 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS09015 PF07729 FCD domain NEJAP_RS09020 PF02082 Transcriptional regulator NEJAP_RS09025 PF00501 AMP-binding enzyme NEJAP_RS09025 PF14535 AMP-binding enzyme C-terminal domain NEJAP_RS09030 PF00108 Thiolase, N-terminal domain NEJAP_RS09030 PF02803 Thiolase, C-terminal domain NEJAP_RS09035 PF03061 Thioesterase superfamily NEJAP_RS09040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NEJAP_RS09040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NEJAP_RS09040 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NEJAP_RS09045 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS09050 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS09060 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS09065 PF00593 TonB dependent receptor NEJAP_RS09065 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS09075 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS09075 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09075 PF00563 EAL domain NEJAP_RS09090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS09095 PF07848 PaaX-like protein NEJAP_RS09095 PF08223 PaaX-like protein C-terminal domain NEJAP_RS09110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS09115 PF00582 Universal stress protein family NEJAP_RS09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09125 PF03466 LysR substrate binding domain NEJAP_RS09130 PF01494 FAD binding domain NEJAP_RS09140 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS09140 PF14497 Glutathione S-transferase, C-terminal domain NEJAP_RS09145 PF08668 HDOD domain NEJAP_RS09145 PF00563 EAL domain NEJAP_RS09150 PF01926 50S ribosome-binding GTPase NEJAP_RS09190 PF13673 Acetyltransferase (GNAT) domain NEJAP_RS09200 PF00563 EAL domain NEJAP_RS09200 PF01590 GAF domain NEJAP_RS09200 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09200 PF00360 Phytochrome region NEJAP_RS09205 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NEJAP_RS09205 PF18381 YcaO cyclodehydratase C-terminal domain NEJAP_RS09220 PF02515 CoA-transferase family III NEJAP_RS09225 PF00501 AMP-binding enzyme NEJAP_RS09225 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS09240 PF00561 alpha/beta hydrolase fold NEJAP_RS09245 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS09245 PF00072 Response regulator receiver domain NEJAP_RS09250 PF00989 PAS fold NEJAP_RS09250 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS09255 PF00501 AMP-binding enzyme NEJAP_RS09255 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS09260 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS09260 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09260 PF00563 EAL domain NEJAP_RS09265 PF17154 Gammaproteobacterial periplasmic sensor domain NEJAP_RS09265 PF00672 HAMP domain NEJAP_RS09265 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09265 PF00563 EAL domain NEJAP_RS09270 PF01575 MaoC like domain NEJAP_RS09275 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS09275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS09275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS09275 PF12806 Acetyl-CoA dehydrogenase C-terminal like NEJAP_RS09280 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NEJAP_RS09280 PF12241 Trans-2-enoyl-CoA reductase catalytic region NEJAP_RS09280 PF07055 Enoyl reductase FAD binding domain NEJAP_RS09295 PF03466 LysR substrate binding domain NEJAP_RS09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09300 PF13409 Glutathione S-transferase, N-terminal domain NEJAP_RS09315 PF01494 FAD binding domain NEJAP_RS09325 PF05193 Peptidase M16 inactive domain NEJAP_RS09325 PF00675 Insulinase (Peptidase family M16) NEJAP_RS09325 PF08367 Peptidase M16C associated NEJAP_RS09330 PF00892 EamA-like transporter family NEJAP_RS09335 PF00171 Aldehyde dehydrogenase family NEJAP_RS09340 PF06155 Protein of unknown function (DUF971) NEJAP_RS09340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NEJAP_RS09345 PF00596 Class II Aldolase and Adducin N-terminal domain NEJAP_RS09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09350 PF03466 LysR substrate binding domain NEJAP_RS09355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NEJAP_RS09355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NEJAP_RS09360 PF01380 SIS domain NEJAP_RS09360 PF01418 Helix-turn-helix domain, rpiR family NEJAP_RS09365 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS09375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS09385 PF03951 Glutamine synthetase, beta-Grasp domain NEJAP_RS09385 PF00120 Glutamine synthetase, catalytic domain NEJAP_RS09390 PF00171 Aldehyde dehydrogenase family NEJAP_RS09395 PF00732 GMC oxidoreductase NEJAP_RS09395 PF05199 GMC oxidoreductase NEJAP_RS09415 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS09415 PF00501 AMP-binding enzyme NEJAP_RS09420 PF00593 TonB dependent receptor NEJAP_RS09420 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS09430 PF12557 Cob(I)alamin adenosyltransferase N terminal NEJAP_RS09430 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NEJAP_RS09435 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NEJAP_RS09435 PF07685 CobB/CobQ-like glutamine amidotransferase domain NEJAP_RS09440 PF03186 CobD/Cbib protein NEJAP_RS09445 PF00155 Aminotransferase class I and II NEJAP_RS09450 PF07685 CobB/CobQ-like glutamine amidotransferase domain NEJAP_RS09450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NEJAP_RS09455 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NEJAP_RS09460 PF02277 Phosphoribosyltransferase NEJAP_RS09470 PF02654 Cobalamin-5-phosphate synthase NEJAP_RS09475 PF00534 Glycosyl transferases group 1 NEJAP_RS09475 PF13439 Glycosyltransferase Family 4 NEJAP_RS09490 PF11791 Aconitate B N-terminal domain NEJAP_RS09490 PF06434 Aconitate hydratase 2 N-terminus NEJAP_RS09490 PF00330 Aconitase family (aconitate hydratase) NEJAP_RS09520 PF08447 PAS fold NEJAP_RS09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS09530 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09530 PF00072 Response regulator receiver domain NEJAP_RS09535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NEJAP_RS09540 PF00149 Calcineurin-like phosphoesterase NEJAP_RS09545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NEJAP_RS09550 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NEJAP_RS09550 PF00749 tRNA synthetases class I (E and Q), catalytic domain NEJAP_RS09555 PF08448 PAS fold NEJAP_RS09555 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09565 PF00561 alpha/beta hydrolase fold NEJAP_RS09565 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NEJAP_RS09570 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS09570 PF08448 PAS fold NEJAP_RS09580 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS09580 PF00155 Aminotransferase class I and II NEJAP_RS09585 PF01810 LysE type translocator NEJAP_RS09595 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS09600 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS09605 PF00664 ABC transporter transmembrane region NEJAP_RS09605 PF00005 ABC transporter NEJAP_RS09625 PF01177 Asp/Glu/Hydantoin racemase NEJAP_RS09640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NEJAP_RS09640 PF00037 4Fe-4S binding domain NEJAP_RS09640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NEJAP_RS09645 PF12838 4Fe-4S dicluster domain NEJAP_RS09645 PF00384 Molybdopterin oxidoreductase NEJAP_RS09645 PF01568 Molydopterin dinucleotide binding domain NEJAP_RS09645 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NEJAP_RS09645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NEJAP_RS09650 PF02634 FdhD/NarQ family NEJAP_RS09665 PF02607 B12 binding domain NEJAP_RS09665 PF02574 Homocysteine S-methyltransferase NEJAP_RS09665 PF00809 Pterin binding enzyme NEJAP_RS09665 PF02965 Vitamin B12 dependent methionine synthase, activation domain NEJAP_RS09665 PF02310 B12 binding domain NEJAP_RS09685 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NEJAP_RS09685 PF18419 ATP-grasp-like domain NEJAP_RS09685 PF08443 RimK-like ATP-grasp domain NEJAP_RS09685 PF04262 Glutamate-cysteine ligase NEJAP_RS09705 PF00501 AMP-binding enzyme NEJAP_RS09705 PF16177 Acetyl-coenzyme A synthetase N-terminus NEJAP_RS09705 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS09710 PF02743 Cache domain NEJAP_RS09710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS09710 PF00672 HAMP domain NEJAP_RS09720 PF09722 Protein of unknown function (DUF2384) NEJAP_RS09755 PF17149 Periplasmic sensor domain found in signal transduction proteins NEJAP_RS09755 PF00672 HAMP domain NEJAP_RS09755 PF00072 Response regulator receiver domain NEJAP_RS09755 PF01627 Hpt domain NEJAP_RS09755 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS09760 PF08343 Ribonucleotide reductase N-terminal NEJAP_RS09760 PF00317 Ribonucleotide reductase, all-alpha domain NEJAP_RS09760 PF02867 Ribonucleotide reductase, barrel domain NEJAP_RS09775 PF03466 LysR substrate binding domain NEJAP_RS09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09795 PF08803 Putative mono-oxygenase ydhR NEJAP_RS09810 PF12392 Collagenase NEJAP_RS09810 PF01136 Peptidase family U32 NEJAP_RS09825 PF00107 Zinc-binding dehydrogenase NEJAP_RS09825 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09830 PF03466 LysR substrate binding domain NEJAP_RS09835 PF01047 MarR family NEJAP_RS09840 PF00583 Acetyltransferase (GNAT) family NEJAP_RS09845 PF00202 Aminotransferase class-III NEJAP_RS09850 PF06339 Ectoine synthase NEJAP_RS09865 PF00756 Putative esterase NEJAP_RS09870 PF00107 Zinc-binding dehydrogenase NEJAP_RS09870 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS09875 PF03466 LysR substrate binding domain NEJAP_RS09875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09895 PF16868 NMT1-like family NEJAP_RS09910 PF05088 Bacterial NAD-glutamate dehydrogenase NEJAP_RS09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS09915 PF03466 LysR substrate binding domain NEJAP_RS09930 PF11849 Domain of unknown function (DUF3369) NEJAP_RS10015 PF02384 N-6 DNA Methylase NEJAP_RS10025 PF00575 S1 RNA binding domain NEJAP_RS10025 PF08206 Ribonuclease B OB domain NEJAP_RS10025 PF08461 Ribonuclease R winged-helix domain NEJAP_RS10025 PF17876 Cold shock domain NEJAP_RS10025 PF00773 RNB domain NEJAP_RS10030 PF13361 UvrD-like helicase C-terminal domain NEJAP_RS10030 PF00580 UvrD/REP helicase N-terminal domain NEJAP_RS10030 PF12462 DNA helicase IV / RNA helicase N terminal NEJAP_RS10035 PF01979 Amidohydrolase family NEJAP_RS10045 PF02690 Na+/Pi-cotransporter NEJAP_RS10050 PF01384 Phosphate transporter family NEJAP_RS10075 PF01047 MarR family NEJAP_RS10080 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NEJAP_RS10085 PF07690 Major Facilitator Superfamily NEJAP_RS10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10090 PF03466 LysR substrate binding domain NEJAP_RS10095 PF02678 Pirin NEJAP_RS10095 PF17954 Quercetinase C-terminal cupin domain NEJAP_RS10100 PF00857 Isochorismatase family NEJAP_RS10120 PF09313 Domain of unknown function (DUF1971) NEJAP_RS10120 PF03848 Tellurite resistance protein TehB NEJAP_RS10130 PF00171 Aldehyde dehydrogenase family NEJAP_RS10160 PF00171 Aldehyde dehydrogenase family NEJAP_RS10165 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS10175 PF03328 HpcH/HpaI aldolase/citrate lyase family NEJAP_RS10180 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS10185 PF00158 Sigma-54 interaction domain NEJAP_RS10185 PF00072 Response regulator receiver domain NEJAP_RS10185 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS10190 PF13417 Glutathione S-transferase, N-terminal domain NEJAP_RS10190 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS10200 PF00072 Response regulator receiver domain NEJAP_RS10200 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS10220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NEJAP_RS10220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NEJAP_RS10225 PF13476 AAA domain NEJAP_RS10230 PF12320 Type 5 capsule protein repressor C-terminal domain NEJAP_RS10230 PF00149 Calcineurin-like phosphoesterase NEJAP_RS10240 PF00106 short chain dehydrogenase NEJAP_RS10260 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS10265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NEJAP_RS10285 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS10290 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS10290 PF08448 PAS fold NEJAP_RS10300 PF00717 Peptidase S24-like NEJAP_RS10305 PF13438 Domain of unknown function (DUF4113) NEJAP_RS10305 PF00817 impB/mucB/samB family NEJAP_RS10305 PF11799 impB/mucB/samB family C-terminal domain NEJAP_RS10310 PF00989 PAS fold NEJAP_RS10310 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS10315 PF03129 Anticodon binding domain NEJAP_RS10315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NEJAP_RS10315 PF04073 Aminoacyl-tRNA editing domain NEJAP_RS10320 PF00708 Acylphosphatase NEJAP_RS10325 PF03631 Virulence factor BrkB NEJAP_RS10330 PF03960 ArsC family NEJAP_RS10335 PF03358 NADPH-dependent FMN reductase NEJAP_RS10345 PF00266 Aminotransferase class-V NEJAP_RS10350 PF03466 LysR substrate binding domain NEJAP_RS10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10370 PF00561 alpha/beta hydrolase fold NEJAP_RS10375 PF05233 PHB accumulation regulatory domain NEJAP_RS10375 PF07879 PHB/PHA accumulation regulator DNA-binding domain NEJAP_RS10385 PF12832 MFS_1 like family NEJAP_RS10390 PF00563 EAL domain NEJAP_RS10390 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS10395 PF13416 Bacterial extracellular solute-binding protein NEJAP_RS10400 PF02403 Seryl-tRNA synthetase N-terminal domain NEJAP_RS10400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NEJAP_RS10405 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NEJAP_RS10410 PF12002 MgsA AAA+ ATPase C terminal NEJAP_RS10410 PF16193 AAA C-terminal domain NEJAP_RS10410 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS10415 PF03548 Outer membrane lipoprotein carrier protein LolA NEJAP_RS10420 PF01580 FtsK/SpoIIIE family NEJAP_RS10420 PF09397 Ftsk gamma domain NEJAP_RS10420 PF17854 FtsK alpha domain NEJAP_RS10420 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NEJAP_RS10430 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS10435 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NEJAP_RS10440 PF04377 Arginine-tRNA-protein transferase, C terminus NEJAP_RS10440 PF04376 Arginine-tRNA-protein transferase, N terminus NEJAP_RS10445 PF01176 Translation initiation factor 1A / IF-1 NEJAP_RS10450 PF10431 C-terminal, D2-small domain, of ClpB protein NEJAP_RS10450 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS10450 PF02861 Clp amino terminal domain, pathogenicity island component NEJAP_RS10450 PF07724 AAA domain (Cdc48 subfamily) NEJAP_RS10450 PF17871 AAA lid domain NEJAP_RS10455 PF02617 ATP-dependent Clp protease adaptor protein ClpS NEJAP_RS10460 PF00313 'Cold-shock' DNA-binding domain NEJAP_RS10465 PF00180 Isocitrate/isopropylmalate dehydrogenase NEJAP_RS10470 PF00849 RNA pseudouridylate synthase NEJAP_RS10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10475 PF03466 LysR substrate binding domain NEJAP_RS10485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NEJAP_RS10505 PF04055 Radical SAM superfamily NEJAP_RS10505 PF06463 Molybdenum Cofactor Synthesis C NEJAP_RS10510 PF02391 MoaE protein NEJAP_RS10525 PF04356 Protein of unknown function (DUF489) NEJAP_RS10530 PF00206 Lyase NEJAP_RS10530 PF08328 Adenylosuccinate lyase C-terminal NEJAP_RS10540 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NEJAP_RS10550 PF00561 alpha/beta hydrolase fold NEJAP_RS10555 PF00588 SpoU rRNA Methylase family NEJAP_RS10565 PF08007 Cupin superfamily protein NEJAP_RS10570 PF03466 LysR substrate binding domain NEJAP_RS10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10575 PF00463 Isocitrate lyase family NEJAP_RS10590 PF12833 Helix-turn-helix domain NEJAP_RS10595 PF00672 HAMP domain NEJAP_RS10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS10595 PF17200 Single Cache domain 2 NEJAP_RS10610 PF01361 Tautomerase enzyme NEJAP_RS10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10630 PF03466 LysR substrate binding domain NEJAP_RS10635 PF00892 EamA-like transporter family NEJAP_RS10660 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS10690 PF03618 Kinase/pyrophosphorylase NEJAP_RS10720 PF00202 Aminotransferase class-III NEJAP_RS10725 PF00171 Aldehyde dehydrogenase family NEJAP_RS10730 PF02515 CoA-transferase family III NEJAP_RS10735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS10735 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS10735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS10740 PF01177 Asp/Glu/Hydantoin racemase NEJAP_RS10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS10745 PF03466 LysR substrate binding domain NEJAP_RS10755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NEJAP_RS10755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NEJAP_RS10760 PF13145 PPIC-type PPIASE domain NEJAP_RS10770 PF00216 Bacterial DNA-binding protein NEJAP_RS10775 PF02190 ATP-dependent protease La (LON) substrate-binding domain NEJAP_RS10775 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS10775 PF05362 Lon protease (S16) C-terminal proteolytic domain NEJAP_RS10780 PF01521 Iron-sulphur cluster biosynthesis NEJAP_RS10780 PF01106 NifU-like domain NEJAP_RS10785 PF02254 TrkA-N domain NEJAP_RS10785 PF00999 Sodium/hydrogen exchanger family NEJAP_RS10790 PF00591 Glycosyl transferase family, a/b domain NEJAP_RS10790 PF02885 Glycosyl transferase family, helical bundle domain NEJAP_RS10795 PF01938 TRAM domain NEJAP_RS10795 PF05958 tRNA (Uracil-5-)-methyltransferase NEJAP_RS10800 PF00849 RNA pseudouridylate synthase NEJAP_RS10805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NEJAP_RS10805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NEJAP_RS10815 PF00701 Dihydrodipicolinate synthetase family NEJAP_RS10820 PF00578 AhpC/TSA family NEJAP_RS10830 PF01206 Sulfurtransferase TusA NEJAP_RS10835 PF01435 Peptidase family M48 NEJAP_RS10845 PF01814 Hemerythrin HHE cation binding domain NEJAP_RS10850 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS10855 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS10860 PF00290 Tryptophan synthase alpha chain NEJAP_RS10875 PF13411 MerR HTH family regulatory protein NEJAP_RS10895 PF05114 Protein of unknown function (DUF692) NEJAP_RS10905 PF00155 Aminotransferase class I and II NEJAP_RS10910 PF00892 EamA-like transporter family NEJAP_RS10915 PF00072 Response regulator receiver domain NEJAP_RS10915 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS10925 PF17773 UPF0176 acylphosphatase like domain NEJAP_RS10925 PF00581 Rhodanese-like domain NEJAP_RS10935 PF00472 RF-1 domain NEJAP_RS10945 PF00899 ThiF family NEJAP_RS10955 PF00308 Bacterial dnaA protein NEJAP_RS10960 PF01594 AI-2E family transporter NEJAP_RS10970 PF00586 AIR synthase related protein, N-terminal domain NEJAP_RS10970 PF02769 AIR synthase related protein, C-terminal domain NEJAP_RS10975 PF00551 Formyl transferase NEJAP_RS11010 PF06725 3D domain NEJAP_RS11010 PF03562 MltA specific insert domain NEJAP_RS11015 PF00313 'Cold-shock' DNA-binding domain NEJAP_RS11025 PF05995 Cysteine dioxygenase type I NEJAP_RS11030 PF02348 Cytidylyltransferase NEJAP_RS11035 PF03966 Trm112p-like protein NEJAP_RS11040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NEJAP_RS11045 PF02472 Biopolymer transport protein ExbD/TolR NEJAP_RS11050 PF01618 MotA/TolQ/ExbB proton channel family NEJAP_RS11055 PF13567 Domain of unknown function (DUF4131) NEJAP_RS11055 PF03772 Competence protein NEJAP_RS11055 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS11065 PF00005 ABC transporter NEJAP_RS11070 PF02687 FtsX-like permease family NEJAP_RS11070 PF12704 MacB-like periplasmic core domain NEJAP_RS11090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NEJAP_RS11090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS11100 PF02424 ApbE family NEJAP_RS11105 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS11105 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS11105 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS11110 PF02508 Rnf-Nqr subunit, membrane protein NEJAP_RS11115 PF02508 Rnf-Nqr subunit, membrane protein NEJAP_RS11120 PF04205 FMN-binding domain NEJAP_RS11125 PF03116 NQR2, RnfD, RnfE family NEJAP_RS11130 PF11973 NQRA C-terminal domain NEJAP_RS11130 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NEJAP_RS11135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NEJAP_RS11135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NEJAP_RS11140 PF00270 DEAD/DEAH box helicase NEJAP_RS11140 PF00271 Helicase conserved C-terminal domain NEJAP_RS11140 PF17757 UvrB interaction domain NEJAP_RS11140 PF03461 TRCF domain NEJAP_RS11140 PF02559 CarD-like/TRCF domain NEJAP_RS11150 PF00924 Mechanosensitive ion channel NEJAP_RS11155 PF00933 Glycosyl hydrolase family 3 N terminal domain NEJAP_RS11160 PF01476 LysM domain NEJAP_RS11160 PF03734 L,D-transpeptidase catalytic domain NEJAP_RS11170 PF08496 Peptidase family S49 N-terminal NEJAP_RS11170 PF01343 Peptidase family S49 NEJAP_RS11180 PF00293 NUDIX domain NEJAP_RS11180 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NEJAP_RS11180 PF09297 NADH pyrophosphatase zinc ribbon domain NEJAP_RS11185 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NEJAP_RS11190 PF00929 Exonuclease NEJAP_RS11195 PF00075 RNase H NEJAP_RS11200 PF08241 Methyltransferase domain NEJAP_RS11205 PF16123 Hydroxyacylglutathione hydrolase C-terminus NEJAP_RS11205 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS11210 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NEJAP_RS11210 PF01476 LysM domain NEJAP_RS11220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NEJAP_RS11225 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS11230 PF12911 N-terminal TM domain of oligopeptide transport permease C NEJAP_RS11230 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS11235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NEJAP_RS11235 PF00005 ABC transporter NEJAP_RS11240 PF03458 UPF0126 domain NEJAP_RS11245 PF02075 Crossover junction endodeoxyribonuclease RuvC NEJAP_RS11250 PF01709 Transcriptional regulator NEJAP_RS11255 PF02938 GAD domain NEJAP_RS11255 PF00152 tRNA synthetases class II (D, K and N) NEJAP_RS11255 PF01336 OB-fold nucleic acid binding domain NEJAP_RS11270 PF00563 EAL domain NEJAP_RS11270 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS11270 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS11275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NEJAP_RS11275 PF00672 HAMP domain NEJAP_RS11275 PF00072 Response regulator receiver domain NEJAP_RS11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS11275 PF01627 Hpt domain NEJAP_RS11275 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS11285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS11305 PF01613 Flavin reductase like domain NEJAP_RS11315 PF00766 Electron transfer flavoprotein FAD-binding domain NEJAP_RS11315 PF01012 Electron transfer flavoprotein domain NEJAP_RS11320 PF01012 Electron transfer flavoprotein domain NEJAP_RS11335 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS11335 PF07694 5TMR of 5TMR-LYT NEJAP_RS11345 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS11360 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NEJAP_RS11360 PF01433 Peptidase family M1 domain NEJAP_RS11360 PF11940 Domain of unknown function (DUF3458) Ig-like fold NEJAP_RS11375 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NEJAP_RS11375 PF01694 Rhomboid family NEJAP_RS11380 PF00149 Calcineurin-like phosphoesterase NEJAP_RS11385 PF01513 ATP-NAD kinase NEJAP_RS11390 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS11405 PF07348 Syd protein (SUKH-2) NEJAP_RS11410 PF03352 Methyladenine glycosylase NEJAP_RS11415 PF00155 Aminotransferase class I and II NEJAP_RS11425 PF08668 HDOD domain NEJAP_RS11435 PF10672 S-adenosylmethionine-dependent methyltransferase NEJAP_RS11435 PF17785 PUA-like domain NEJAP_RS11440 PF01435 Peptidase family M48 NEJAP_RS11445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NEJAP_RS11445 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS11450 PF03372 Endonuclease/Exonuclease/phosphatase family NEJAP_RS11460 PF00581 Rhodanese-like domain NEJAP_RS11460 PF11127 Protein of unknown function (DUF2892) NEJAP_RS11465 PF01022 Bacterial regulatory protein, arsR family NEJAP_RS11470 PF00583 Acetyltransferase (GNAT) family NEJAP_RS11470 PF13380 CoA binding domain NEJAP_RS11470 PF13607 Succinyl-CoA ligase like flavodoxin domain NEJAP_RS11485 PF01810 LysE type translocator NEJAP_RS11490 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NEJAP_RS11495 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS11495 PF00563 EAL domain NEJAP_RS11495 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS11520 PF04315 Elongation factor P hydroxylase NEJAP_RS11530 PF02872 5'-nucleotidase, C-terminal domain NEJAP_RS11530 PF00149 Calcineurin-like phosphoesterase NEJAP_RS11570 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS11580 PF01171 PP-loop family NEJAP_RS11590 PF18381 YcaO cyclodehydratase C-terminal domain NEJAP_RS11590 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NEJAP_RS11615 PF00563 EAL domain NEJAP_RS11615 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS11615 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS11630 PF03880 DbpA RNA binding domain NEJAP_RS11630 PF00270 DEAD/DEAH box helicase NEJAP_RS11630 PF00271 Helicase conserved C-terminal domain NEJAP_RS11635 PF05433 Glycine zipper 2TM domain NEJAP_RS11650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NEJAP_RS11655 PF13460 NAD(P)H-binding NEJAP_RS11660 PF03601 Conserved hypothetical protein 698 NEJAP_RS11665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS11665 PF03466 LysR substrate binding domain NEJAP_RS11680 PF03690 Uncharacterised protein family (UPF0160) NEJAP_RS11705 PF01810 LysE type translocator NEJAP_RS11740 PF01722 BolA-like protein NEJAP_RS11775 PF00909 Ammonium Transporter Family NEJAP_RS11780 PF10672 S-adenosylmethionine-dependent methyltransferase NEJAP_RS11780 PF02926 THUMP domain NEJAP_RS11780 PF01170 Putative RNA methylase family UPF0020 NEJAP_RS11785 PF04957 Ribosome modulation factor NEJAP_RS11790 PF01180 Dihydroorotate dehydrogenase NEJAP_RS11805 PF07885 Ion channel NEJAP_RS11805 PF02254 TrkA-N domain NEJAP_RS11810 PF01370 NAD dependent epimerase/dehydratase family NEJAP_RS11810 PF08338 Domain of unknown function (DUF1731) NEJAP_RS11815 PF00677 Lumazine binding domain NEJAP_RS11840 PF00072 Response regulator receiver domain NEJAP_RS11840 PF00158 Sigma-54 interaction domain NEJAP_RS11840 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS11845 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS11845 PF02743 Cache domain NEJAP_RS11850 PF00800 Prephenate dehydratase NEJAP_RS11850 PF01817 Chorismate mutase type II NEJAP_RS11855 PF04972 BON domain NEJAP_RS11855 PF01476 LysM domain NEJAP_RS11865 PF03976 Polyphosphate kinase 2 (PPK2) NEJAP_RS11875 PF00270 DEAD/DEAH box helicase NEJAP_RS11875 PF00271 Helicase conserved C-terminal domain NEJAP_RS11885 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NEJAP_RS11885 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NEJAP_RS11890 PF00209 Sodium:neurotransmitter symporter family NEJAP_RS11895 PF02203 Tar ligand binding domain homologue NEJAP_RS11895 PF00672 HAMP domain NEJAP_RS11895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS11905 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS11905 PF16197 Ketoacyl-synthetase C-terminal extension NEJAP_RS11905 PF00109 Beta-ketoacyl synthase, N-terminal domain NEJAP_RS11905 PF08659 KR domain NEJAP_RS11905 PF00550 Phosphopantetheine attachment site NEJAP_RS11905 PF14765 Polyketide synthase dehydratase NEJAP_RS11905 PF00698 Acyl transferase domain NEJAP_RS11905 PF02801 Beta-ketoacyl synthase, C-terminal domain NEJAP_RS11910 PF00155 Aminotransferase class I and II NEJAP_RS11915 PF05159 Capsule polysaccharide biosynthesis protein NEJAP_RS11920 PF00884 Sulfatase NEJAP_RS11930 PF00459 Inositol monophosphatase family NEJAP_RS11935 PF05159 Capsule polysaccharide biosynthesis protein NEJAP_RS11955 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NEJAP_RS11955 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NEJAP_RS11955 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NEJAP_RS11965 PF00005 ABC transporter NEJAP_RS11975 PF10531 SLBB domain NEJAP_RS11975 PF02563 Polysaccharide biosynthesis/export protein NEJAP_RS11985 PF13977 BetI-type transcriptional repressor, C-terminal NEJAP_RS11985 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS11990 PF00005 ABC transporter NEJAP_RS11990 PF00571 CBS domain NEJAP_RS11995 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS12000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NEJAP_RS12005 PF00732 GMC oxidoreductase NEJAP_RS12005 PF05199 GMC oxidoreductase NEJAP_RS12010 PF00171 Aldehyde dehydrogenase family NEJAP_RS12020 PF03466 LysR substrate binding domain NEJAP_RS12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS12025 PF02913 FAD linked oxidases, C-terminal domain NEJAP_RS12025 PF01565 FAD binding domain NEJAP_RS12030 PF01565 FAD binding domain NEJAP_RS12035 PF13183 4Fe-4S dicluster domain NEJAP_RS12035 PF02754 Cysteine-rich domain NEJAP_RS12060 PF00563 EAL domain NEJAP_RS12060 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS12060 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS12065 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS12065 PF00072 Response regulator receiver domain NEJAP_RS12065 PF09308 LuxQ, periplasmic NEJAP_RS12075 PF00593 TonB dependent receptor NEJAP_RS12075 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS12080 PF04337 Protein of unknown function, DUF480 NEJAP_RS12085 PF01593 Flavin containing amine oxidoreductase NEJAP_RS12090 PF01227 GTP cyclohydrolase I NEJAP_RS12100 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS12100 PF00107 Zinc-binding dehydrogenase NEJAP_RS12110 PF03441 FAD binding domain of DNA photolyase NEJAP_RS12110 PF00875 DNA photolyase NEJAP_RS12120 PF12973 ChrR Cupin-like domain NEJAP_RS12125 PF04545 Sigma-70, region 4 NEJAP_RS12125 PF04542 Sigma-70 region 2 NEJAP_RS12130 PF01593 Flavin containing amine oxidoreductase NEJAP_RS12145 PF13302 Acetyltransferase (GNAT) domain NEJAP_RS12175 PF07690 Major Facilitator Superfamily NEJAP_RS12185 PF02028 BCCT, betaine/carnitine/choline family transporter NEJAP_RS12195 PF01012 Electron transfer flavoprotein domain NEJAP_RS12195 PF00766 Electron transfer flavoprotein FAD-binding domain NEJAP_RS12200 PF13183 4Fe-4S dicluster domain NEJAP_RS12200 PF02754 Cysteine-rich domain NEJAP_RS12205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NEJAP_RS12220 PF01965 DJ-1/PfpI family NEJAP_RS12220 PF12833 Helix-turn-helix domain NEJAP_RS12225 PF09905 DNA-binding protein VF530 NEJAP_RS12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS12235 PF00183 Hsp90 protein NEJAP_RS12260 PF02664 S-Ribosylhomocysteinase (LuxS) NEJAP_RS12265 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NEJAP_RS12280 PF04403 Paraquat-inducible protein A NEJAP_RS12285 PF02463 RecF/RecN/SMC N terminal domain NEJAP_RS12295 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NEJAP_RS12295 PF01266 FAD dependent oxidoreductase NEJAP_RS12300 PF01434 Peptidase family M41 NEJAP_RS12300 PF17862 AAA+ lid domain NEJAP_RS12300 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS12320 PF00549 CoA-ligase NEJAP_RS12320 PF02629 CoA binding domain NEJAP_RS12325 PF08442 ATP-grasp domain NEJAP_RS12325 PF00549 CoA-ligase NEJAP_RS12330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NEJAP_RS12330 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS12335 PF02817 e3 binding domain NEJAP_RS12335 PF00364 Biotin-requiring enzyme NEJAP_RS12335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NEJAP_RS12340 PF02779 Transketolase, pyrimidine binding domain NEJAP_RS12340 PF16870 2-oxoglutarate dehydrogenase C-terminal NEJAP_RS12340 PF16078 2-oxoglutarate dehydrogenase N-terminus NEJAP_RS12340 PF00676 Dehydrogenase E1 component NEJAP_RS12345 PF13085 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS12350 PF00890 FAD binding domain NEJAP_RS12350 PF02910 Fumarate reductase flavoprotein C-term NEJAP_RS12355 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NEJAP_RS12360 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NEJAP_RS12365 PF00285 Citrate synthase, C-terminal domain NEJAP_RS12375 PF09335 SNARE associated Golgi protein NEJAP_RS12380 PF00271 Helicase conserved C-terminal domain NEJAP_RS12380 PF00270 DEAD/DEAH box helicase NEJAP_RS12380 PF00570 HRDC domain NEJAP_RS12380 PF16124 RecQ zinc-binding NEJAP_RS12380 PF09382 RQC domain NEJAP_RS12390 PF00842 Alanine racemase, C-terminal domain NEJAP_RS12390 PF01168 Alanine racemase, N-terminal domain NEJAP_RS12395 PF01042 Endoribonuclease L-PSP NEJAP_RS12400 PF01266 FAD dependent oxidoreductase NEJAP_RS12405 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS12410 PF00672 HAMP domain NEJAP_RS12410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS12410 PF17200 Single Cache domain 2 NEJAP_RS12415 PF02152 Dihydroneopterin aldolase NEJAP_RS12430 PF01709 Transcriptional regulator NEJAP_RS12435 PF01471 Putative peptidoglycan binding domain NEJAP_RS12435 PF03734 L,D-transpeptidase catalytic domain NEJAP_RS12515 PF00296 Luciferase-like monooxygenase NEJAP_RS12520 PF04336 Acyl carrier protein phosphodiesterase NEJAP_RS12525 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS12525 PF00155 Aminotransferase class I and II NEJAP_RS12530 PF01411 tRNA synthetases class II (A) NEJAP_RS12530 PF02272 DHHA1 domain NEJAP_RS12530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NEJAP_RS12535 PF01810 LysE type translocator NEJAP_RS12540 PF01008 Initiation factor 2 subunit family NEJAP_RS12545 PF12137 RNA polymerase recycling family C-terminal NEJAP_RS12545 PF18337 RapA N-terminal Tudor like domain NEJAP_RS12545 PF18339 RapA N-terminal Tudor like domain 1 NEJAP_RS12545 PF00176 SNF2 family N-terminal domain NEJAP_RS12545 PF00271 Helicase conserved C-terminal domain NEJAP_RS12550 PF00892 EamA-like transporter family NEJAP_RS12565 PF03079 ARD/ARD' family NEJAP_RS12575 PF00596 Class II Aldolase and Adducin N-terminal domain NEJAP_RS12595 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS12600 PF00005 ABC transporter NEJAP_RS12605 PF01979 Amidohydrolase family NEJAP_RS12610 PF00072 Response regulator receiver domain NEJAP_RS12615 PF12848 ABC transporter NEJAP_RS12615 PF00005 ABC transporter NEJAP_RS12620 PF00313 'Cold-shock' DNA-binding domain NEJAP_RS12625 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NEJAP_RS12625 PF05221 S-adenosyl-L-homocysteine hydrolase NEJAP_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS12630 PF03466 LysR substrate binding domain NEJAP_RS12640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NEJAP_RS12645 PF02036 SCP-2 sterol transfer family NEJAP_RS12650 PF01136 Peptidase family U32 NEJAP_RS12655 PF01136 Peptidase family U32 NEJAP_RS12660 PF03969 AFG1-like ATPase NEJAP_RS12665 PF00171 Aldehyde dehydrogenase family NEJAP_RS12670 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS12670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS12680 PF00072 Response regulator receiver domain NEJAP_RS12680 PF00158 Sigma-54 interaction domain NEJAP_RS12680 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS12685 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS12685 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS12685 PF00563 EAL domain NEJAP_RS12690 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS12690 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS12690 PF00563 EAL domain NEJAP_RS12695 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS12695 PF00072 Response regulator receiver domain NEJAP_RS12700 PF00072 Response regulator receiver domain NEJAP_RS12700 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS12710 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS12710 PF08448 PAS fold NEJAP_RS12710 PF13188 PAS domain NEJAP_RS12710 PF00072 Response regulator receiver domain NEJAP_RS12715 PF00072 Response regulator receiver domain NEJAP_RS12720 PF12852 Cupin NEJAP_RS12720 PF12833 Helix-turn-helix domain NEJAP_RS12730 PF01266 FAD dependent oxidoreductase NEJAP_RS12735 PF08943 CsiD NEJAP_RS12740 PF07729 FCD domain NEJAP_RS12740 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS12750 PF03466 LysR substrate binding domain NEJAP_RS12750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS12755 PF00005 ABC transporter NEJAP_RS12755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NEJAP_RS12760 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS12760 PF12911 N-terminal TM domain of oligopeptide transport permease C NEJAP_RS12765 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS12770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NEJAP_RS12820 PF05922 Peptidase inhibitor I9 NEJAP_RS12820 PF00082 Subtilase family NEJAP_RS12825 PF00005 ABC transporter NEJAP_RS12825 PF00664 ABC transporter transmembrane region NEJAP_RS12835 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit NEJAP_RS12850 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS12850 PF00072 Response regulator receiver domain NEJAP_RS12855 PF17149 Periplasmic sensor domain found in signal transduction proteins NEJAP_RS12855 PF00672 HAMP domain NEJAP_RS12855 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS12855 PF01627 Hpt domain NEJAP_RS12855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS12855 PF00072 Response regulator receiver domain NEJAP_RS12860 PF00171 Aldehyde dehydrogenase family NEJAP_RS12870 PF00171 Aldehyde dehydrogenase family NEJAP_RS12875 PF13183 4Fe-4S dicluster domain NEJAP_RS12875 PF02754 Cysteine-rich domain NEJAP_RS12880 PF01565 FAD binding domain NEJAP_RS12885 PF02913 FAD linked oxidases, C-terminal domain NEJAP_RS12885 PF01565 FAD binding domain NEJAP_RS12890 PF04304 Protein of unknown function (DUF454) NEJAP_RS12915 PF00005 ABC transporter NEJAP_RS12920 PF01042 Endoribonuclease L-PSP NEJAP_RS12940 PF02311 AraC-like ligand binding domain NEJAP_RS12940 PF12833 Helix-turn-helix domain NEJAP_RS12965 PF00664 ABC transporter transmembrane region NEJAP_RS12965 PF00005 ABC transporter NEJAP_RS12980 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS12980 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS12980 PF00563 EAL domain NEJAP_RS12990 PF01966 HD domain NEJAP_RS12995 PF05721 Phytanoyl-CoA dioxygenase (PhyH) NEJAP_RS13010 PF07702 UTRA domain NEJAP_RS13010 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS13015 PF00072 Response regulator receiver domain NEJAP_RS13015 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS13020 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS13020 PF13426 PAS domain NEJAP_RS13020 PF00672 HAMP domain NEJAP_RS13020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS13025 PF00092 von Willebrand factor type A domain NEJAP_RS13045 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS13045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS13045 PF02743 Cache domain NEJAP_RS13050 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS13050 PF00158 Sigma-54 interaction domain NEJAP_RS13050 PF00072 Response regulator receiver domain NEJAP_RS13065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS13075 PF00106 short chain dehydrogenase NEJAP_RS13080 PF02515 CoA-transferase family III NEJAP_RS13085 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS13090 PF12833 Helix-turn-helix domain NEJAP_RS13095 PF00465 Iron-containing alcohol dehydrogenase NEJAP_RS13100 PF00171 Aldehyde dehydrogenase family NEJAP_RS13105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS13105 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS13105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS13120 PF02803 Thiolase, C-terminal domain NEJAP_RS13120 PF00108 Thiolase, N-terminal domain NEJAP_RS13125 PF00106 short chain dehydrogenase NEJAP_RS13130 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS13130 PF00501 AMP-binding enzyme NEJAP_RS13135 PF07044 Protein of unknown function (DUF1329) NEJAP_RS13190 PF01882 Protein of unknown function DUF58 NEJAP_RS13195 PF17863 AAA lid domain NEJAP_RS13195 PF07726 ATPase family associated with various cellular activities (AAA) NEJAP_RS13200 PF00884 Sulfatase NEJAP_RS13200 PF16385 Domain of unknown function NEJAP_RS13205 PF12833 Helix-turn-helix domain NEJAP_RS13205 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NEJAP_RS13220 PF00072 Response regulator receiver domain NEJAP_RS13220 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS13225 PF07730 Histidine kinase NEJAP_RS13225 PF17200 Single Cache domain 2 NEJAP_RS13235 PF17757 UvrB interaction domain NEJAP_RS13235 PF12344 Ultra-violet resistance protein B NEJAP_RS13235 PF00271 Helicase conserved C-terminal domain NEJAP_RS13235 PF02151 UvrB/uvrC motif NEJAP_RS13235 PF04851 Type III restriction enzyme, res subunit NEJAP_RS13240 PF00155 Aminotransferase class I and II NEJAP_RS13245 PF16925 Tetracyclin repressor-like, C-terminal domain NEJAP_RS13245 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS13250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS13255 PF00873 AcrB/AcrD/AcrF family NEJAP_RS13260 PF02321 Outer membrane efflux protein NEJAP_RS13275 PF00692 dUTPase NEJAP_RS13280 PF10609 NUBPL iron-transfer P-loop NTPase NEJAP_RS13290 PF05958 tRNA (Uracil-5-)-methyltransferase NEJAP_RS13300 PF09334 tRNA synthetases class I (M) NEJAP_RS13300 PF01588 Putative tRNA binding domain NEJAP_RS13310 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS13315 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS13320 PF00005 ABC transporter NEJAP_RS13330 PF00916 Sulfate permease family NEJAP_RS13330 PF01740 STAS domain NEJAP_RS13335 PF01171 PP-loop family NEJAP_RS13335 PF14437 MafB19-like deaminase NEJAP_RS13335 PF11734 TilS substrate C-terminal domain NEJAP_RS13340 PF00817 impB/mucB/samB family NEJAP_RS13340 PF11799 impB/mucB/samB family C-terminal domain NEJAP_RS13340 PF11798 IMS family HHH motif NEJAP_RS13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS13370 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS13380 PF00072 Response regulator receiver domain NEJAP_RS13380 PF00158 Sigma-54 interaction domain NEJAP_RS13385 PF04073 Aminoacyl-tRNA editing domain NEJAP_RS13390 PF12843 Putative quorum-sensing-regulated virulence factor NEJAP_RS13395 PF08241 Methyltransferase domain NEJAP_RS13400 PF05127 Helicase NEJAP_RS13400 PF08351 Domain of unknown function (DUF1726) NEJAP_RS13400 PF13718 GNAT acetyltransferase 2 NEJAP_RS13400 PF17176 tRNA-binding domain NEJAP_RS13420 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS13420 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS13425 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NEJAP_RS13445 PF01253 Translation initiation factor SUI1 NEJAP_RS13450 PF01966 HD domain NEJAP_RS13455 PF17200 Single Cache domain 2 NEJAP_RS13455 PF00672 HAMP domain NEJAP_RS13455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS13460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NEJAP_RS13465 PF09500 Putative thioesterase (yiiD_Cterm) NEJAP_RS13465 PF00583 Acetyltransferase (GNAT) family NEJAP_RS13470 PF00881 Nitroreductase family NEJAP_RS13475 PF14489 QueF-like protein NEJAP_RS13475 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NEJAP_RS13480 PF01061 ABC-2 type transporter NEJAP_RS13485 PF00005 ABC transporter NEJAP_RS13495 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS13495 PF00360 Phytochrome region NEJAP_RS13495 PF01590 GAF domain NEJAP_RS13495 PF00563 EAL domain NEJAP_RS13565 PF04143 Sulphur transport NEJAP_RS13570 PF07730 Histidine kinase NEJAP_RS13570 PF05231 MASE1 NEJAP_RS13570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS13575 PF13407 Periplasmic binding protein domain NEJAP_RS13595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NEJAP_RS13595 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS13595 PF00403 Heavy-metal-associated domain NEJAP_RS13610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NEJAP_RS13610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NEJAP_RS13625 PF02675 S-adenosylmethionine decarboxylase NEJAP_RS13630 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS13635 PF00916 Sulfate permease family NEJAP_RS13635 PF01740 STAS domain NEJAP_RS13640 PF04205 FMN-binding domain NEJAP_RS13640 PF12801 4Fe-4S binding domain NEJAP_RS13655 PF00216 Bacterial DNA-binding protein NEJAP_RS13660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NEJAP_RS13660 PF03484 tRNA synthetase B5 domain NEJAP_RS13660 PF03147 Ferredoxin-fold anticodon binding domain NEJAP_RS13660 PF03483 B3/4 domain NEJAP_RS13660 PF01588 Putative tRNA binding domain NEJAP_RS13665 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NEJAP_RS13665 PF01409 tRNA synthetases class II core domain (F) NEJAP_RS13670 PF00453 Ribosomal protein L20 NEJAP_RS13675 PF01632 Ribosomal protein L35 NEJAP_RS13680 PF05198 Translation initiation factor IF-3, N-terminal domain NEJAP_RS13680 PF00707 Translation initiation factor IF-3, C-terminal domain NEJAP_RS13685 PF02824 TGS domain NEJAP_RS13685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NEJAP_RS13685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NEJAP_RS13685 PF03129 Anticodon binding domain NEJAP_RS13690 PF07729 FCD domain NEJAP_RS13690 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS13695 PF02754 Cysteine-rich domain NEJAP_RS13700 PF02589 LUD domain NEJAP_RS13700 PF13183 4Fe-4S dicluster domain NEJAP_RS13700 PF11870 Domain of unknown function (DUF3390) NEJAP_RS13705 PF02589 LUD domain NEJAP_RS13720 PF01205 Uncharacterized protein family UPF0029 NEJAP_RS13720 PF09186 Domain of unknown function (DUF1949) NEJAP_RS13730 PF03466 LysR substrate binding domain NEJAP_RS13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS13735 PF05368 NmrA-like family NEJAP_RS13745 PF12852 Cupin NEJAP_RS13745 PF12833 Helix-turn-helix domain NEJAP_RS13750 PF00155 Aminotransferase class I and II NEJAP_RS13750 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS13760 PF02347 Glycine cleavage system P-protein NEJAP_RS13765 PF01597 Glycine cleavage H-protein NEJAP_RS13770 PF00464 Serine hydroxymethyltransferase NEJAP_RS13775 PF03315 Serine dehydratase beta chain NEJAP_RS13775 PF03313 Serine dehydratase alpha chain NEJAP_RS13780 PF01235 Sodium:alanine symporter family NEJAP_RS13785 PF01571 Aminomethyltransferase folate-binding domain NEJAP_RS13785 PF08669 Glycine cleavage T-protein C-terminal barrel domain NEJAP_RS13795 PF03104 DNA polymerase family B, exonuclease domain NEJAP_RS13795 PF00136 DNA polymerase family B NEJAP_RS13815 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NEJAP_RS13815 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NEJAP_RS13820 PF01070 FMN-dependent dehydrogenase NEJAP_RS13830 PF02321 Outer membrane efflux protein NEJAP_RS13835 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS13835 PF00072 Response regulator receiver domain NEJAP_RS13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS13840 PF00529 HlyD membrane-fusion protein of T1SS NEJAP_RS13845 PF00005 ABC transporter NEJAP_RS13845 PF00664 ABC transporter transmembrane region NEJAP_RS13845 PF03412 Peptidase C39 family NEJAP_RS13860 PF00764 Arginosuccinate synthase NEJAP_RS13870 PF00929 Exonuclease NEJAP_RS13875 PF10417 C-terminal domain of 1-Cys peroxiredoxin NEJAP_RS13875 PF00578 AhpC/TSA family NEJAP_RS13880 PF00462 Glutaredoxin NEJAP_RS13885 PF00202 Aminotransferase class-III NEJAP_RS13890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NEJAP_RS13890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NEJAP_RS13895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS13895 PF03466 LysR substrate binding domain NEJAP_RS13905 PF01474 Class-II DAHP synthetase family NEJAP_RS13925 PF07556 Protein of unknown function (DUF1538) NEJAP_RS13930 PF07556 Protein of unknown function (DUF1538) NEJAP_RS13950 PF01743 Poly A polymerase head domain NEJAP_RS13950 PF00571 CBS domain NEJAP_RS13955 PF00551 Formyl transferase NEJAP_RS13955 PF01842 ACT domain NEJAP_RS13960 PF00591 Glycosyl transferase family, a/b domain NEJAP_RS13960 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NEJAP_RS13960 PF02885 Glycosyl transferase family, helical bundle domain NEJAP_RS13970 PF00881 Nitroreductase family NEJAP_RS13975 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS13975 PF00563 EAL domain NEJAP_RS13975 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS13980 PF00258 Flavodoxin NEJAP_RS13990 PF07683 Cobalamin synthesis protein cobW C-terminal domain NEJAP_RS13990 PF02492 CobW/HypB/UreG, nucleotide-binding domain NEJAP_RS14000 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS14000 PF08448 PAS fold NEJAP_RS14005 PF05683 Fumarase C-terminus NEJAP_RS14005 PF05681 Fumarate hydratase (Fumerase) NEJAP_RS14010 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS14010 PF00072 Response regulator receiver domain NEJAP_RS14020 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS14030 PF11008 Protein of unknown function (DUF2846) NEJAP_RS14040 PF07992 Pyridine nucleotide-disulphide oxidoreductase NEJAP_RS14040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NEJAP_RS14045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NEJAP_RS14045 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS14045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NEJAP_RS14060 PF16325 Peptidase family U32 C-terminal domain NEJAP_RS14060 PF01136 Peptidase family U32 NEJAP_RS14065 PF02834 LigT like Phosphoesterase NEJAP_RS14070 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS14070 PF13417 Glutathione S-transferase, N-terminal domain NEJAP_RS14080 PF00557 Metallopeptidase family M24 NEJAP_RS14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS14085 PF03466 LysR substrate binding domain NEJAP_RS14090 PF00246 Zinc carboxypeptidase NEJAP_RS14090 PF18027 Cytosolic carboxypeptidase N-terminal domain NEJAP_RS14095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NEJAP_RS14095 PF00005 ABC transporter NEJAP_RS14100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NEJAP_RS14100 PF00005 ABC transporter NEJAP_RS14105 PF12911 N-terminal TM domain of oligopeptide transport permease C NEJAP_RS14105 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS14110 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS14115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NEJAP_RS14120 PF00118 TCP-1/cpn60 chaperonin family NEJAP_RS14125 PF00166 Chaperonin 10 Kd subunit NEJAP_RS14140 PF07690 Major Facilitator Superfamily NEJAP_RS14155 PF04461 Protein of unknown function (DUF520) NEJAP_RS14160 PF02558 Ketopantoate reductase PanE/ApbA NEJAP_RS14160 PF08546 Ketopantoate reductase PanE/ApbA C terminal NEJAP_RS14165 PF04650 YSIRK type signal peptide NEJAP_RS14165 PF17210 SdrD B-like domain NEJAP_RS14165 PF00746 LPXTG cell wall anchor motif NEJAP_RS14165 PF17961 Bacterial Ig domain NEJAP_RS14175 PF00529 HlyD membrane-fusion protein of T1SS NEJAP_RS14175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS14180 PF00005 ABC transporter NEJAP_RS14180 PF00664 ABC transporter transmembrane region NEJAP_RS14185 PF03976 Polyphosphate kinase 2 (PPK2) NEJAP_RS14195 PF00593 TonB dependent receptor NEJAP_RS14195 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS14200 PF01923 Cobalamin adenosyltransferase NEJAP_RS14205 PF08668 HDOD domain NEJAP_RS14210 PF01497 Periplasmic binding protein NEJAP_RS14215 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS14215 PF00107 Zinc-binding dehydrogenase NEJAP_RS14220 PF01625 Peptide methionine sulfoxide reductase NEJAP_RS14235 PF01910 Thiamine-binding protein NEJAP_RS14245 PF00849 RNA pseudouridylate synthase NEJAP_RS14245 PF01479 S4 domain NEJAP_RS14255 PF07729 FCD domain NEJAP_RS14255 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS14265 PF01784 NIF3 (NGG1p interacting factor 3) NEJAP_RS14270 PF13180 PDZ domain NEJAP_RS14275 PF00815 Histidinol dehydrogenase NEJAP_RS14280 PF01634 ATP phosphoribosyltransferase NEJAP_RS14285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NEJAP_RS14290 PF01722 BolA-like protein NEJAP_RS14305 PF02470 MlaD protein NEJAP_RS14310 PF02405 Permease MlaE NEJAP_RS14315 PF00005 ABC transporter NEJAP_RS14320 PF01699 Sodium/calcium exchanger protein NEJAP_RS14325 PF01380 SIS domain NEJAP_RS14325 PF00571 CBS domain NEJAP_RS14335 PF03968 OstA-like protein NEJAP_RS14340 PF00005 ABC transporter NEJAP_RS14340 PF12399 Branched-chain amino acid ATP-binding cassette transporter NEJAP_RS14345 PF04552 Sigma-54, DNA binding domain NEJAP_RS14345 PF00309 Sigma-54 factor, Activator interacting domain (AID) NEJAP_RS14345 PF04963 Sigma-54 factor, core binding domain NEJAP_RS14350 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NEJAP_RS14355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NEJAP_RS14360 PF03668 P-loop ATPase protein family NEJAP_RS14365 PF00381 PTS HPr component phosphorylation site NEJAP_RS14370 PF00571 CBS domain NEJAP_RS14370 PF03448 MgtE intracellular N domain NEJAP_RS14370 PF01769 Divalent cation transporter NEJAP_RS14375 PF04751 Protein of unknown function (DUF615) NEJAP_RS14390 PF10150 Ribonuclease E/G family NEJAP_RS14390 PF00575 S1 RNA binding domain NEJAP_RS14395 PF02545 Maf-like protein NEJAP_RS14400 PF04093 rod shape-determining protein MreD NEJAP_RS14405 PF04085 rod shape-determining protein MreC NEJAP_RS14415 PF02686 Glu-tRNAGln amidotransferase C subunit NEJAP_RS14420 PF01425 Amidase NEJAP_RS14425 PF02934 GatB/GatE catalytic domain NEJAP_RS14425 PF02637 GatB domain NEJAP_RS14465 PF01625 Peptide methionine sulfoxide reductase NEJAP_RS14470 PF07963 Prokaryotic N-terminal methylation motif NEJAP_RS14475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NEJAP_RS14480 PF12833 Helix-turn-helix domain NEJAP_RS14480 PF01965 DJ-1/PfpI family NEJAP_RS14485 PF00202 Aminotransferase class-III NEJAP_RS14495 PF00313 'Cold-shock' DNA-binding domain NEJAP_RS14500 PF08207 Elongation factor P (EF-P) KOW-like domain NEJAP_RS14500 PF09285 Elongation factor P, C-terminal NEJAP_RS14500 PF01132 Elongation factor P (EF-P) OB domain NEJAP_RS14505 PF13417 Glutathione S-transferase, N-terminal domain NEJAP_RS14515 PF04958 Arginine N-succinyltransferase beta subunit NEJAP_RS14520 PF04958 Arginine N-succinyltransferase beta subunit NEJAP_RS14525 PF00171 Aldehyde dehydrogenase family NEJAP_RS14530 PF04996 Succinylarginine dihydrolase NEJAP_RS14540 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS14545 PF01502 Phosphoribosyl-AMP cyclohydrolase NEJAP_RS14550 PF02649 Type I GTP cyclohydrolase folE2 NEJAP_RS14555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS14555 PF03466 LysR substrate binding domain NEJAP_RS14560 PF01717 Cobalamin-independent synthase, Catalytic domain NEJAP_RS14560 PF08267 Cobalamin-independent synthase, N-terminal domain NEJAP_RS14565 PF04324 BFD-like [2Fe-2S] binding domain NEJAP_RS14570 PF04958 Arginine N-succinyltransferase beta subunit NEJAP_RS14575 PF00551 Formyl transferase NEJAP_RS14580 PF04816 tRNA (adenine(22)-N(1))-methyltransferase NEJAP_RS14585 PF12848 ABC transporter NEJAP_RS14585 PF00005 ABC transporter NEJAP_RS14610 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS14610 PF00042 Globin NEJAP_RS14610 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS14640 PF05163 DinB family NEJAP_RS14650 PF00108 Thiolase, N-terminal domain NEJAP_RS14650 PF02803 Thiolase, C-terminal domain NEJAP_RS14655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS14655 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS14655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS14660 PF00106 short chain dehydrogenase NEJAP_RS14665 PF12833 Helix-turn-helix domain NEJAP_RS14680 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS14680 PF00501 AMP-binding enzyme NEJAP_RS14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS14685 PF03466 LysR substrate binding domain NEJAP_RS14690 PF00873 AcrB/AcrD/AcrF family NEJAP_RS14695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NEJAP_RS14720 PF03453 MoeA N-terminal region (domain I and II) NEJAP_RS14720 PF03454 MoeA C-terminal region (domain IV) NEJAP_RS14720 PF00994 Probable molybdopterin binding domain NEJAP_RS14725 PF00994 Probable molybdopterin binding domain NEJAP_RS14735 PF06463 Molybdenum Cofactor Synthesis C NEJAP_RS14735 PF04055 Radical SAM superfamily NEJAP_RS14745 PF01235 Sodium:alanine symporter family NEJAP_RS14750 PF13332 Hemagglutinin repeat NEJAP_RS14750 PF04829 Pre-toxin domain with VENN motif NEJAP_RS14750 PF05860 haemagglutination activity domain NEJAP_RS14755 PF17287 POTRA domain NEJAP_RS14755 PF08479 POTRA domain, ShlB-type NEJAP_RS14755 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NEJAP_RS14760 PF00484 Carbonic anhydrase NEJAP_RS14765 PF09312 SurA N-terminal domain NEJAP_RS14765 PF00639 PPIC-type PPIASE domain NEJAP_RS14770 PF02665 Nitrate reductase gamma subunit NEJAP_RS14775 PF02613 Nitrate reductase delta subunit NEJAP_RS14780 PF14711 Respiratory nitrate reductase beta C-terminal NEJAP_RS14780 PF13247 4Fe-4S dicluster domain NEJAP_RS14785 PF01568 Molydopterin dinucleotide binding domain NEJAP_RS14785 PF14710 Respiratory nitrate reductase alpha N-terminal NEJAP_RS14785 PF00384 Molybdopterin oxidoreductase NEJAP_RS14790 PF07690 Major Facilitator Superfamily NEJAP_RS14795 PF07690 Major Facilitator Superfamily NEJAP_RS14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS14800 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NEJAP_RS14800 PF07730 Histidine kinase NEJAP_RS14800 PF00672 HAMP domain NEJAP_RS14805 PF00072 Response regulator receiver domain NEJAP_RS14805 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS14810 PF05175 Methyltransferase small domain NEJAP_RS14820 PF00873 AcrB/AcrD/AcrF family NEJAP_RS14830 PF13426 PAS domain NEJAP_RS14830 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS14830 PF00563 EAL domain NEJAP_RS14835 PF07690 Major Facilitator Superfamily NEJAP_RS14855 PF00206 Lyase NEJAP_RS14855 PF10415 Fumarase C C-terminus NEJAP_RS14880 PF13677 Membrane MotB of proton-channel complex MotA/MotB NEJAP_RS14880 PF00691 OmpA family NEJAP_RS14885 PF01618 MotA/TolQ/ExbB proton channel family NEJAP_RS14890 PF01904 Protein of unknown function DUF72 NEJAP_RS14900 PF00313 'Cold-shock' DNA-binding domain NEJAP_RS14905 PF04102 SlyX NEJAP_RS14910 PF01553 Acyltransferase NEJAP_RS14915 PF04445 Putative SAM-dependent methyltransferase NEJAP_RS14920 PF02673 Bacitracin resistance protein BacA NEJAP_RS14925 PF00814 Glycoprotease family NEJAP_RS14930 PF02441 Flavoprotein NEJAP_RS14935 PF08245 Mur ligase middle domain NEJAP_RS14935 PF01225 Mur ligase family, catalytic domain NEJAP_RS14935 PF02875 Mur ligase family, glutamate ligase domain NEJAP_RS14940 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NEJAP_RS14945 PF00719 Inorganic pyrophosphatase NEJAP_RS14960 PF01925 Sulfite exporter TauE/SafE NEJAP_RS14975 PF03167 Uracil DNA glycosylase superfamily NEJAP_RS14980 PF00043 Glutathione S-transferase, C-terminal domain NEJAP_RS14980 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS15005 PF00462 Glutaredoxin NEJAP_RS15010 PF01479 S4 domain NEJAP_RS15010 PF00849 RNA pseudouridylate synthase NEJAP_RS15020 PF01910 Thiamine-binding protein NEJAP_RS15035 PF12729 Four helix bundle sensory module for signal transduction NEJAP_RS15035 PF00672 HAMP domain NEJAP_RS15035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS15040 PF03466 LysR substrate binding domain NEJAP_RS15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15050 PF03466 LysR substrate binding domain NEJAP_RS15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15055 PF06779 Uncharacterised MFS-type transporter YbfB NEJAP_RS15060 PF07724 AAA domain (Cdc48 subfamily) NEJAP_RS15060 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS15060 PF10431 C-terminal, D2-small domain, of ClpB protein NEJAP_RS15075 PF12833 Helix-turn-helix domain NEJAP_RS15080 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS15090 PF03466 LysR substrate binding domain NEJAP_RS15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15140 PF02514 CobN/Magnesium Chelatase NEJAP_RS15195 PF01810 LysE type translocator NEJAP_RS15205 PF01494 FAD binding domain NEJAP_RS15210 PF00270 DEAD/DEAH box helicase NEJAP_RS15210 PF00271 Helicase conserved C-terminal domain NEJAP_RS15225 PF12704 MacB-like periplasmic core domain NEJAP_RS15225 PF02687 FtsX-like permease family NEJAP_RS15230 PF00005 ABC transporter NEJAP_RS15235 PF14437 MafB19-like deaminase NEJAP_RS15240 PF00072 Response regulator receiver domain NEJAP_RS15255 PF00561 alpha/beta hydrolase fold NEJAP_RS15295 PF00589 Phage integrase family NEJAP_RS15295 PF13495 Phage integrase, N-terminal SAM-like domain NEJAP_RS15300 PF03466 LysR substrate binding domain NEJAP_RS15300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15325 PF00221 Aromatic amino acid lyase NEJAP_RS15330 PF17391 Urocanase N-terminal domain NEJAP_RS15330 PF17392 Urocanase C-terminal domain NEJAP_RS15330 PF01175 Urocanase Rossmann-like domain NEJAP_RS15335 PF00491 Arginase family NEJAP_RS15340 PF01979 Amidohydrolase family NEJAP_RS15345 PF07702 UTRA domain NEJAP_RS15345 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS15355 PF00860 Permease family NEJAP_RS15365 PF00156 Phosphoribosyl transferase domain NEJAP_RS15370 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NEJAP_RS15380 PF01220 Dehydroquinase class II NEJAP_RS15385 PF00364 Biotin-requiring enzyme NEJAP_RS15390 PF02785 Biotin carboxylase C-terminal domain NEJAP_RS15390 PF00289 Biotin carboxylase, N-terminal domain NEJAP_RS15390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NEJAP_RS15410 PF01207 Dihydrouridine synthase (Dus) NEJAP_RS15415 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS15420 PF01808 AICARFT/IMPCHase bienzyme NEJAP_RS15420 PF02142 MGS-like domain NEJAP_RS15425 PF02843 Phosphoribosylglycinamide synthetase, C domain NEJAP_RS15425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NEJAP_RS15425 PF02844 Phosphoribosylglycinamide synthetase, N domain NEJAP_RS15445 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NEJAP_RS15445 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NEJAP_RS15450 PF00676 Dehydrogenase E1 component NEJAP_RS15455 PF02780 Transketolase, C-terminal domain NEJAP_RS15455 PF02779 Transketolase, pyrimidine binding domain NEJAP_RS15460 PF02817 e3 binding domain NEJAP_RS15460 PF00364 Biotin-requiring enzyme NEJAP_RS15460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NEJAP_RS15465 PF06798 PrkA serine protein kinase C-terminal domain NEJAP_RS15465 PF08298 PrkA AAA domain NEJAP_RS15470 PF04285 Protein of unknown function (DUF444) NEJAP_RS15475 PF04293 SpoVR like protein NEJAP_RS15480 PF01230 HIT domain NEJAP_RS15490 PF01810 LysE type translocator NEJAP_RS15495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15495 PF03466 LysR substrate binding domain NEJAP_RS15500 PF01515 Phosphate acetyl/butaryl transferase NEJAP_RS15505 PF00871 Acetokinase family NEJAP_RS15520 PF08032 RNA 2'-O ribose methyltransferase substrate binding NEJAP_RS15520 PF00588 SpoU rRNA Methylase family NEJAP_RS15525 PF00762 Ferrochelatase NEJAP_RS15530 PF05191 Adenylate kinase, active site lid NEJAP_RS15535 PF00311 Phosphoenolpyruvate carboxylase NEJAP_RS15545 PF03819 MazG nucleotide pyrophosphohydrolase domain NEJAP_RS15550 PF04607 Region found in RelA / SpoT proteins NEJAP_RS15550 PF02824 TGS domain NEJAP_RS15550 PF13291 ACT domain NEJAP_RS15555 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS15570 PF01329 Pterin 4 alpha carbinolamine dehydratase NEJAP_RS15580 PF00571 CBS domain NEJAP_RS15580 PF00005 ABC transporter NEJAP_RS15585 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS15600 PF01648 4'-phosphopantetheinyl transferase superfamily NEJAP_RS15605 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NEJAP_RS15610 PF02565 Recombination protein O C terminal NEJAP_RS15610 PF11967 Recombination protein O N terminal NEJAP_RS15615 PF07650 KH domain NEJAP_RS15615 PF01926 50S ribosome-binding GTPase NEJAP_RS15620 PF00035 Double-stranded RNA binding motif NEJAP_RS15620 PF14622 Ribonuclease-III-like NEJAP_RS15630 PF10502 Signal peptidase, peptidase S26 NEJAP_RS15635 PF06421 GTP-binding protein LepA C-terminus NEJAP_RS15635 PF03144 Elongation factor Tu domain 2 NEJAP_RS15635 PF00679 Elongation factor G C-terminus NEJAP_RS15635 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS15640 PF13180 PDZ domain NEJAP_RS15655 PF08281 Sigma-70, region 4 NEJAP_RS15655 PF04542 Sigma-70 region 2 NEJAP_RS15660 PF02910 Fumarate reductase flavoprotein C-term NEJAP_RS15660 PF00890 FAD binding domain NEJAP_RS15665 PF03937 Flavinator of succinate dehydrogenase NEJAP_RS15695 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NEJAP_RS15695 PF01926 50S ribosome-binding GTPase NEJAP_RS15700 PF13360 PQQ-like domain NEJAP_RS15705 PF09976 Tetratricopeptide repeat-like domain NEJAP_RS15710 PF03129 Anticodon binding domain NEJAP_RS15710 PF13393 Histidyl-tRNA synthetase NEJAP_RS15715 PF13464 Domain of unknown function (DUF4115) NEJAP_RS15725 PF04055 Radical SAM superfamily NEJAP_RS15730 PF00334 Nucleoside diphosphate kinase NEJAP_RS15735 PF04384 Iron-sulphur cluster assembly NEJAP_RS15740 PF00111 2Fe-2S iron-sulfur cluster binding domain NEJAP_RS15745 PF00012 Hsp70 protein NEJAP_RS15750 PF07743 HSCB C-terminal oligomerisation domain NEJAP_RS15755 PF01521 Iron-sulphur cluster biosynthesis NEJAP_RS15760 PF01592 NifU-like N terminal domain NEJAP_RS15765 PF00266 Aminotransferase class-V NEJAP_RS15770 PF02082 Transcriptional regulator NEJAP_RS15775 PF00588 SpoU rRNA Methylase family NEJAP_RS15780 PF00459 Inositol monophosphatase family NEJAP_RS15785 PF00709 Adenylosuccinate synthetase NEJAP_RS15790 PF13393 Histidyl-tRNA synthetase NEJAP_RS15800 PF01145 SPFH domain / Band 7 family NEJAP_RS15805 PF01145 SPFH domain / Band 7 family NEJAP_RS15805 PF12221 Bacterial membrane protein N terminal NEJAP_RS15810 PF13167 GTP-binding GTPase N-terminal NEJAP_RS15810 PF01926 50S ribosome-binding GTPase NEJAP_RS15810 PF16360 GTP-binding GTPase Middle Region NEJAP_RS15815 PF17209 Hfq protein NEJAP_RS15825 PF08676 MutL C terminal dimerisation domain NEJAP_RS15825 PF01119 DNA mismatch repair protein, C-terminal domain NEJAP_RS15830 PF11741 AMIN domain NEJAP_RS15830 PF01520 N-acetylmuramoyl-L-alanine amidase NEJAP_RS15835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NEJAP_RS15840 PF01256 Carbohydrate kinase NEJAP_RS15840 PF03853 YjeF-related protein N-terminus NEJAP_RS15845 PF08331 Domain of unknown function (DUF1730) NEJAP_RS15855 PF08406 CbbQ/NirQ/NorQ C-terminal NEJAP_RS15855 PF07728 AAA domain (dynein-related subfamily) NEJAP_RS15860 PF00115 Cytochrome C and Quinol oxidase polypeptide I NEJAP_RS15865 PF00034 Cytochrome c NEJAP_RS15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS15870 PF03466 LysR substrate binding domain NEJAP_RS15875 PF00892 EamA-like transporter family NEJAP_RS15885 PF00510 Cytochrome c oxidase subunit III NEJAP_RS15890 PF00929 Exonuclease NEJAP_RS15895 PF03193 RsgA GTPase NEJAP_RS15905 PF00581 Rhodanese-like domain NEJAP_RS15910 PF02666 Phosphatidylserine decarboxylase NEJAP_RS15920 PF00672 HAMP domain NEJAP_RS15920 PF16591 Helical bimodular sensor domain NEJAP_RS15920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS15925 PF03167 Uracil DNA glycosylase superfamily NEJAP_RS15935 PF00152 tRNA synthetases class II (D, K and N) NEJAP_RS15935 PF01336 OB-fold nucleic acid binding domain NEJAP_RS15940 PF00472 RF-1 domain NEJAP_RS15940 PF03462 PCRF domain NEJAP_RS15945 PF03600 Citrate transporter NEJAP_RS15960 PF01322 Cytochrome C' NEJAP_RS15965 PF00258 Flavodoxin NEJAP_RS15975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NEJAP_RS15985 PF04143 Sulphur transport NEJAP_RS15995 PF03739 Lipopolysaccharide export system permease LptF/LptG NEJAP_RS16000 PF03739 Lipopolysaccharide export system permease LptF/LptG NEJAP_RS16005 PF02789 Cytosol aminopeptidase family, N-terminal domain NEJAP_RS16005 PF00883 Cytosol aminopeptidase family, catalytic domain NEJAP_RS16015 PF10458 Valyl tRNA synthetase tRNA binding arm NEJAP_RS16015 PF00133 tRNA synthetases class I (I, L, M and V) NEJAP_RS16015 PF08264 Anticodon-binding domain of tRNA NEJAP_RS16020 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS16020 PF00563 EAL domain NEJAP_RS16020 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS16030 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS16040 PF02311 AraC-like ligand binding domain NEJAP_RS16040 PF12833 Helix-turn-helix domain NEJAP_RS16045 PF00857 Isochorismatase family NEJAP_RS16050 PF13180 PDZ domain NEJAP_RS16075 PF01339 CheB methylesterase NEJAP_RS16075 PF00072 Response regulator receiver domain NEJAP_RS16080 PF03975 CheD chemotactic sensory transduction NEJAP_RS16085 PF01739 CheR methyltransferase, SAM binding domain NEJAP_RS16085 PF03705 CheR methyltransferase, all-alpha domain NEJAP_RS16090 PF08447 PAS fold NEJAP_RS16090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS16095 PF01584 CheW-like domain NEJAP_RS16100 PF02895 Signal transducing histidine kinase, homodimeric domain NEJAP_RS16100 PF01627 Hpt domain NEJAP_RS16100 PF01584 CheW-like domain NEJAP_RS16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS16105 PF00072 Response regulator receiver domain NEJAP_RS16120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS16130 PF01243 Pyridoxamine 5'-phosphate oxidase NEJAP_RS16130 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NEJAP_RS16140 PF04403 Paraquat-inducible protein A NEJAP_RS16145 PF02470 MlaD protein NEJAP_RS16160 PF00485 Phosphoribulokinase / Uridine kinase family NEJAP_RS16165 PF12697 Alpha/beta hydrolase family NEJAP_RS16175 PF00873 AcrB/AcrD/AcrF family NEJAP_RS16185 PF00155 Aminotransferase class I and II NEJAP_RS16190 PF03960 ArsC family NEJAP_RS16195 PF14602 Hexapeptide repeat of succinyl-transferase NEJAP_RS16195 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NEJAP_RS16200 PF01546 Peptidase family M20/M25/M40 NEJAP_RS16200 PF07687 Peptidase dimerisation domain NEJAP_RS16205 PF13847 Methyltransferase domain NEJAP_RS16235 PF04357 TamB, inner membrane protein subunit of TAM complex NEJAP_RS16240 PF07244 Surface antigen variable number repeat NEJAP_RS16240 PF01103 Surface antigen NEJAP_RS16240 PF17243 POTRA domain TamA domain 1 NEJAP_RS16245 PF03449 Transcription elongation factor, N-terminal NEJAP_RS16245 PF01272 Transcription elongation factor, GreA/GreB, C-term NEJAP_RS16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS16270 PF03466 LysR substrate binding domain NEJAP_RS16275 PF00175 Oxidoreductase NAD-binding domain NEJAP_RS16275 PF00970 Oxidoreductase FAD-binding domain NEJAP_RS16285 PF01914 MarC family integral membrane protein NEJAP_RS16295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS16295 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS16295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS16295 PF12806 Acetyl-CoA dehydrogenase C-terminal like NEJAP_RS16310 PF07044 Protein of unknown function (DUF1329) NEJAP_RS16325 PF00877 NlpC/P60 family NEJAP_RS16340 PF00270 DEAD/DEAH box helicase NEJAP_RS16340 PF00271 Helicase conserved C-terminal domain NEJAP_RS16345 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS16345 PF00563 EAL domain NEJAP_RS16345 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS16350 PF01565 FAD binding domain NEJAP_RS16350 PF02913 FAD linked oxidases, C-terminal domain NEJAP_RS16355 PF00462 Glutaredoxin NEJAP_RS16355 PF08534 Redoxin NEJAP_RS16365 PF01741 Large-conductance mechanosensitive channel, MscL NEJAP_RS16370 PF01145 SPFH domain / Band 7 family NEJAP_RS16370 PF16200 C-terminal region of band_7 NEJAP_RS16385 PF00270 DEAD/DEAH box helicase NEJAP_RS16385 PF00271 Helicase conserved C-terminal domain NEJAP_RS16440 PF12833 Helix-turn-helix domain NEJAP_RS16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS16450 PF03466 LysR substrate binding domain NEJAP_RS16465 PF03591 AzlC protein NEJAP_RS16475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NEJAP_RS16475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NEJAP_RS16480 PF00108 Thiolase, N-terminal domain NEJAP_RS16480 PF02803 Thiolase, C-terminal domain NEJAP_RS16485 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS16485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NEJAP_RS16485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NEJAP_RS16490 PF00672 HAMP domain NEJAP_RS16490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS16495 PF00766 Electron transfer flavoprotein FAD-binding domain NEJAP_RS16495 PF01012 Electron transfer flavoprotein domain NEJAP_RS16500 PF01012 Electron transfer flavoprotein domain NEJAP_RS16505 PF00378 Enoyl-CoA hydratase/isomerase NEJAP_RS16520 PF00501 AMP-binding enzyme NEJAP_RS16520 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS16530 PF12806 Acetyl-CoA dehydrogenase C-terminal like NEJAP_RS16530 PF02770 Acyl-CoA dehydrogenase, middle domain NEJAP_RS16530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NEJAP_RS16530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NEJAP_RS16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS16540 PF00672 HAMP domain NEJAP_RS16545 PF06628 Catalase-related immune-responsive NEJAP_RS16545 PF00199 Catalase NEJAP_RS16555 PF00413 Matrixin NEJAP_RS16570 PF05552 Conserved TM helix NEJAP_RS16570 PF00924 Mechanosensitive ion channel NEJAP_RS16580 PF00582 Universal stress protein family NEJAP_RS16590 PF14870 Photosynthesis system II assembly factor YCF48 NEJAP_RS16595 PF13458 Periplasmic binding protein NEJAP_RS16600 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS16605 PF11862 Domain of unknown function (DUF3382) NEJAP_RS16605 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS16610 PF00005 ABC transporter NEJAP_RS16610 PF12399 Branched-chain amino acid ATP-binding cassette transporter NEJAP_RS16615 PF00005 ABC transporter NEJAP_RS16625 PF00437 Type II/IV secretion system protein NEJAP_RS16640 PF00158 Sigma-54 interaction domain NEJAP_RS16640 PF13426 PAS domain NEJAP_RS16640 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS16645 PF01144 Coenzyme A transferase NEJAP_RS16670 PF00206 Lyase NEJAP_RS16670 PF10415 Fumarase C C-terminus NEJAP_RS16675 PF17763 Glutaminase/Asparaginase C-terminal domain NEJAP_RS16675 PF00710 Asparaginase, N-terminal NEJAP_RS16680 PF13380 CoA binding domain NEJAP_RS16685 PF00899 ThiF family NEJAP_RS16690 PF13847 Methyltransferase domain NEJAP_RS16690 PF17827 PrmC N-terminal domain NEJAP_RS16695 PF03462 PCRF domain NEJAP_RS16695 PF00472 RF-1 domain NEJAP_RS16700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NEJAP_RS16700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NEJAP_RS16700 PF01488 Shikimate / quinate 5-dehydrogenase NEJAP_RS16710 PF03550 Outer membrane lipoprotein LolB NEJAP_RS16720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NEJAP_RS16720 PF14572 Phosphoribosyl synthetase-associated domain NEJAP_RS16725 PF14693 Ribosomal protein TL5, C-terminal domain NEJAP_RS16725 PF01386 Ribosomal L25p family NEJAP_RS16730 PF01195 Peptidyl-tRNA hydrolase NEJAP_RS16735 PF01926 50S ribosome-binding GTPase NEJAP_RS16735 PF06071 Protein of unknown function (DUF933) NEJAP_RS16755 PF05231 MASE1 NEJAP_RS16755 PF00563 EAL domain NEJAP_RS16765 PF08461 Ribonuclease R winged-helix domain NEJAP_RS16765 PF08206 Ribonuclease B OB domain NEJAP_RS16765 PF00575 S1 RNA binding domain NEJAP_RS16765 PF00773 RNB domain NEJAP_RS16765 PF17876 Cold shock domain NEJAP_RS16770 PF07549 SecD/SecF GG Motif NEJAP_RS16770 PF02355 Protein export membrane protein NEJAP_RS16775 PF07549 SecD/SecF GG Motif NEJAP_RS16775 PF02355 Protein export membrane protein NEJAP_RS16775 PF13721 SecD export protein N-terminal TM region NEJAP_RS16780 PF02699 Preprotein translocase subunit NEJAP_RS16785 PF01702 Queuine tRNA-ribosyltransferase NEJAP_RS16790 PF02547 Queuosine biosynthesis protein NEJAP_RS16830 PF13610 DDE domain NEJAP_RS16835 PF18029 Glyoxalase-like domain NEJAP_RS16840 PF07690 Major Facilitator Superfamily NEJAP_RS16845 PF00202 Aminotransferase class-III NEJAP_RS16850 PF13520 Amino acid permease NEJAP_RS16860 PF00155 Aminotransferase class I and II NEJAP_RS16860 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS16865 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS16870 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS16875 PF00005 ABC transporter NEJAP_RS16875 PF08402 TOBE domain NEJAP_RS16880 PF13416 Bacterial extracellular solute-binding protein NEJAP_RS16890 PF00171 Aldehyde dehydrogenase family NEJAP_RS16895 PF00360 Phytochrome region NEJAP_RS16895 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS16895 PF01590 GAF domain NEJAP_RS16895 PF00563 EAL domain NEJAP_RS16905 PF00005 ABC transporter NEJAP_RS16905 PF00664 ABC transporter transmembrane region NEJAP_RS16925 PF07969 Amidohydrolase family NEJAP_RS16935 PF08367 Peptidase M16C associated NEJAP_RS16935 PF05193 Peptidase M16 inactive domain NEJAP_RS16935 PF00675 Insulinase (Peptidase family M16) NEJAP_RS16940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NEJAP_RS16940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NEJAP_RS16945 PF00005 ABC transporter NEJAP_RS16950 PF00563 EAL domain NEJAP_RS16950 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS16950 PF08448 PAS fold NEJAP_RS16965 PF02203 Tar ligand binding domain homologue NEJAP_RS16965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS16965 PF00672 HAMP domain NEJAP_RS16970 PF03466 LysR substrate binding domain NEJAP_RS16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS16975 PF00107 Zinc-binding dehydrogenase NEJAP_RS16975 PF16884 N-terminal domain of oxidoreductase NEJAP_RS16980 PF01965 DJ-1/PfpI family NEJAP_RS16995 PF03448 MgtE intracellular N domain NEJAP_RS16995 PF01769 Divalent cation transporter NEJAP_RS16995 PF00571 CBS domain NEJAP_RS17005 PF00593 TonB dependent receptor NEJAP_RS17005 PF07715 TonB-dependent Receptor Plug Domain NEJAP_RS17015 PF00072 Response regulator receiver domain NEJAP_RS17015 PF00672 HAMP domain NEJAP_RS17015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS17015 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS17015 PF01627 Hpt domain NEJAP_RS17015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NEJAP_RS17055 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NEJAP_RS17060 PF00365 Phosphofructokinase NEJAP_RS17065 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS17075 PF01263 Aldose 1-epimerase NEJAP_RS17100 PF01964 Radical SAM ThiC family NEJAP_RS17100 PF13667 ThiC-associated domain NEJAP_RS17105 PF08543 Phosphomethylpyrimidine kinase NEJAP_RS17115 PF01569 PAP2 superfamily NEJAP_RS17120 PF12146 Serine aminopeptidase, S33 NEJAP_RS17125 PF06827 Zinc finger found in FPG and IleRS NEJAP_RS17125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NEJAP_RS17125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NEJAP_RS17130 PF00892 EamA-like transporter family NEJAP_RS17135 PF00392 Bacterial regulatory proteins, gntR family NEJAP_RS17135 PF00155 Aminotransferase class I and II NEJAP_RS17140 PF00471 Ribosomal protein L33 NEJAP_RS17145 PF00830 Ribosomal L28 family NEJAP_RS17155 PF04002 RadC-like JAB domain NEJAP_RS17160 PF04127 DNA / pantothenate metabolism flavoprotein NEJAP_RS17160 PF02441 Flavoprotein NEJAP_RS17165 PF00692 dUTPase NEJAP_RS17170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NEJAP_RS17170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NEJAP_RS17170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NEJAP_RS17170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NEJAP_RS17175 PF00696 Amino acid kinase family NEJAP_RS17180 PF00440 Bacterial regulatory proteins, tetR family NEJAP_RS17185 PF04748 Divergent polysaccharide deacetylase NEJAP_RS17190 PF03572 Peptidase family S41 NEJAP_RS17190 PF13180 PDZ domain NEJAP_RS17195 PF01551 Peptidase family M23 NEJAP_RS17200 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NEJAP_RS17200 PF01676 Metalloenzyme superfamily NEJAP_RS17205 PF00581 Rhodanese-like domain NEJAP_RS17210 PF00462 Glutaredoxin NEJAP_RS17215 PF02556 Preprotein translocase subunit SecB NEJAP_RS17225 PF00588 SpoU rRNA Methylase family NEJAP_RS17230 PF00072 Response regulator receiver domain NEJAP_RS17230 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS17230 PF00158 Sigma-54 interaction domain NEJAP_RS17235 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS17235 PF00989 PAS fold NEJAP_RS17235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS17240 PF03951 Glutamine synthetase, beta-Grasp domain NEJAP_RS17240 PF00120 Glutamine synthetase, catalytic domain NEJAP_RS17245 PF03144 Elongation factor Tu domain 2 NEJAP_RS17245 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS17245 PF00679 Elongation factor G C-terminus NEJAP_RS17250 PF00561 alpha/beta hydrolase fold NEJAP_RS17255 PF02580 D-Tyr-tRNA(Tyr) deacylase NEJAP_RS17260 PF03942 DTW domain NEJAP_RS17270 PF04055 Radical SAM superfamily NEJAP_RS17270 PF06463 Molybdenum Cofactor Synthesis C NEJAP_RS17275 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NEJAP_RS17300 PF01794 Ferric reductase like transmembrane component NEJAP_RS17305 PF00174 Oxidoreductase molybdopterin binding domain NEJAP_RS17310 PF01066 CDP-alcohol phosphatidyltransferase NEJAP_RS17315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS17315 PF03466 LysR substrate binding domain NEJAP_RS17325 PF10369 Small subunit of acetolactate synthase NEJAP_RS17330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NEJAP_RS17330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NEJAP_RS17330 PF00205 Thiamine pyrophosphate enzyme, central domain NEJAP_RS17340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NEJAP_RS17350 PF00535 Glycosyl transferase family 2 NEJAP_RS17355 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NEJAP_RS17365 PF01370 NAD dependent epimerase/dehydratase family NEJAP_RS17370 PF00072 Response regulator receiver domain NEJAP_RS17375 PF10431 C-terminal, D2-small domain, of ClpB protein NEJAP_RS17375 PF17871 AAA lid domain NEJAP_RS17375 PF07724 AAA domain (Cdc48 subfamily) NEJAP_RS17375 PF02861 Clp amino terminal domain, pathogenicity island component NEJAP_RS17375 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS17380 PF02421 Ferrous iron transport protein B NEJAP_RS17380 PF07670 Nucleoside recognition NEJAP_RS17380 PF17910 FeoB cytosolic helical domain NEJAP_RS17380 PF07664 Ferrous iron transport protein B C terminus NEJAP_RS17380 PF04023 FeoA domain NEJAP_RS17395 PF08240 Alcohol dehydrogenase GroES-like domain NEJAP_RS17395 PF00107 Zinc-binding dehydrogenase NEJAP_RS17400 PF00155 Aminotransferase class I and II NEJAP_RS17410 PF13404 AsnC-type helix-turn-helix domain NEJAP_RS17410 PF01037 Lrp/AsnC ligand binding domain NEJAP_RS17415 PF02578 Multi-copper polyphenol oxidoreductase laccase NEJAP_RS17420 PF01479 S4 domain NEJAP_RS17420 PF00849 RNA pseudouridylate synthase NEJAP_RS17425 PF13525 Outer membrane lipoprotein NEJAP_RS17430 PF02540 NAD synthase NEJAP_RS17435 PF01266 FAD dependent oxidoreductase NEJAP_RS17445 PF07963 Prokaryotic N-terminal methylation motif NEJAP_RS17445 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NEJAP_RS17455 PF05567 Neisseria PilC beta-propeller domain NEJAP_RS17480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS17485 PF01252 Signal peptidase (SPase) II NEJAP_RS17490 PF00133 tRNA synthetases class I (I, L, M and V) NEJAP_RS17490 PF08264 Anticodon-binding domain of tRNA NEJAP_RS17490 PF06827 Zinc finger found in FPG and IleRS NEJAP_RS17495 PF01687 Riboflavin kinase NEJAP_RS17495 PF06574 FAD synthetase NEJAP_RS17500 PF03023 Lipid II flippase MurJ NEJAP_RS17505 PF01649 Ribosomal protein S20 NEJAP_RS17510 PF01472 PUA domain NEJAP_RS17510 PF00696 Amino acid kinase family NEJAP_RS17515 PF01018 GTP1/OBG NEJAP_RS17515 PF01926 50S ribosome-binding GTPase NEJAP_RS17520 PF01016 Ribosomal L27 protein NEJAP_RS17525 PF00829 Ribosomal prokaryotic L21 protein NEJAP_RS17530 PF00348 Polyprenyl synthetase NEJAP_RS17535 PF07977 FabA-like domain NEJAP_RS17540 PF00109 Beta-ketoacyl synthase, N-terminal domain NEJAP_RS17540 PF02801 Beta-ketoacyl synthase, C-terminal domain NEJAP_RS17545 PF01553 Acyltransferase NEJAP_RS17550 PF02597 ThiS family NEJAP_RS17555 PF01967 MoaC family NEJAP_RS17565 PF03453 MoeA N-terminal region (domain I and II) NEJAP_RS17565 PF00994 Probable molybdopterin binding domain NEJAP_RS17565 PF03454 MoeA C-terminal region (domain IV) NEJAP_RS17570 PF04247 Invasion gene expression up-regulator, SirB NEJAP_RS17575 PF04321 RmlD substrate binding domain NEJAP_RS17580 PF00436 Single-strand binding protein family NEJAP_RS17585 PF17760 UvrA interaction domain NEJAP_RS17585 PF17755 UvrA DNA-binding domain NEJAP_RS17590 PF01196 Ribosomal protein L17 NEJAP_RS17595 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NEJAP_RS17595 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NEJAP_RS17595 PF01000 RNA polymerase Rpb3/RpoA insert domain NEJAP_RS17600 PF00163 Ribosomal protein S4/S9 N-terminal domain NEJAP_RS17600 PF01479 S4 domain NEJAP_RS17605 PF00411 Ribosomal protein S11 NEJAP_RS17610 PF00416 Ribosomal protein S13/S18 NEJAP_RS17615 PF00444 Ribosomal protein L36 NEJAP_RS17620 PF00344 SecY translocase NEJAP_RS17625 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NEJAP_RS17630 PF00327 Ribosomal protein L30p/L7e NEJAP_RS17635 PF00333 Ribosomal protein S5, N-terminal domain NEJAP_RS17635 PF03719 Ribosomal protein S5, C-terminal domain NEJAP_RS17640 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NEJAP_RS17645 PF00347 Ribosomal protein L6 NEJAP_RS17650 PF00410 Ribosomal protein S8 NEJAP_RS17655 PF00253 Ribosomal protein S14p/S29e NEJAP_RS17660 PF00281 Ribosomal protein L5 NEJAP_RS17660 PF00673 ribosomal L5P family C-terminus NEJAP_RS17665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NEJAP_RS17665 PF00467 KOW motif NEJAP_RS17670 PF00238 Ribosomal protein L14p/L23e NEJAP_RS17675 PF00366 Ribosomal protein S17 NEJAP_RS17680 PF00831 Ribosomal L29 protein NEJAP_RS17685 PF00252 Ribosomal protein L16p/L10e NEJAP_RS17690 PF00189 Ribosomal protein S3, C-terminal domain NEJAP_RS17690 PF07650 KH domain NEJAP_RS17695 PF00237 Ribosomal protein L22p/L17e NEJAP_RS17700 PF00203 Ribosomal protein S19 NEJAP_RS17705 PF03947 Ribosomal Proteins L2, C-terminal domain NEJAP_RS17705 PF00181 Ribosomal Proteins L2, RNA binding domain NEJAP_RS17710 PF00276 Ribosomal protein L23 NEJAP_RS17715 PF00573 Ribosomal protein L4/L1 family NEJAP_RS17720 PF00297 Ribosomal protein L3 NEJAP_RS17730 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS17730 PF03143 Elongation factor Tu C-terminal domain NEJAP_RS17730 PF03144 Elongation factor Tu domain 2 NEJAP_RS17735 PF03144 Elongation factor Tu domain 2 NEJAP_RS17735 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS17735 PF03764 Elongation factor G, domain IV NEJAP_RS17735 PF14492 Elongation Factor G, domain II NEJAP_RS17735 PF00679 Elongation factor G C-terminus NEJAP_RS17740 PF00177 Ribosomal protein S7p/S5e NEJAP_RS17745 PF00164 Ribosomal protein S12/S23 NEJAP_RS17750 PF04998 RNA polymerase Rpb1, domain 5 NEJAP_RS17750 PF04983 RNA polymerase Rpb1, domain 3 NEJAP_RS17750 PF00623 RNA polymerase Rpb1, domain 2 NEJAP_RS17750 PF04997 RNA polymerase Rpb1, domain 1 NEJAP_RS17750 PF05000 RNA polymerase Rpb1, domain 4 NEJAP_RS17755 PF04560 RNA polymerase Rpb2, domain 7 NEJAP_RS17755 PF00562 RNA polymerase Rpb2, domain 6 NEJAP_RS17755 PF10385 RNA polymerase beta subunit external 1 domain NEJAP_RS17755 PF04565 RNA polymerase Rpb2, domain 3 NEJAP_RS17755 PF04561 RNA polymerase Rpb2, domain 2 NEJAP_RS17755 PF04563 RNA polymerase beta subunit NEJAP_RS17760 PF16320 Ribosomal protein L7/L12 dimerisation domain NEJAP_RS17760 PF00542 Ribosomal protein L7/L12 C-terminal domain NEJAP_RS17765 PF00466 Ribosomal protein L10 NEJAP_RS17770 PF00687 Ribosomal protein L1p/L10e family NEJAP_RS17775 PF03946 Ribosomal protein L11, N-terminal domain NEJAP_RS17775 PF00298 Ribosomal protein L11, RNA binding domain NEJAP_RS17780 PF00467 KOW motif NEJAP_RS17780 PF02357 Transcription termination factor nusG NEJAP_RS17785 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NEJAP_RS17795 PF03144 Elongation factor Tu domain 2 NEJAP_RS17795 PF03143 Elongation factor Tu C-terminal domain NEJAP_RS17795 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS17825 PF03309 Type III pantothenate kinase NEJAP_RS17830 PF02237 Biotin protein ligase C terminal domain NEJAP_RS17830 PF03099 Biotin/lipoate A/B protein ligase family NEJAP_RS17830 PF08279 HTH domain NEJAP_RS17835 PF00186 Dihydrofolate reductase NEJAP_RS17845 PF00303 Thymidylate synthase NEJAP_RS17850 PF01790 Prolipoprotein diacylglyceryl transferase NEJAP_RS17855 PF01925 Sulfite exporter TauE/SafE NEJAP_RS17865 PF02896 PEP-utilising enzyme, TIM barrel domain NEJAP_RS17865 PF00391 PEP-utilising enzyme, mobile domain NEJAP_RS17865 PF05524 PEP-utilising enzyme, N-terminal NEJAP_RS17865 PF01590 GAF domain NEJAP_RS17870 PF00293 NUDIX domain NEJAP_RS17885 PF00563 EAL domain NEJAP_RS17885 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS17885 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS17895 PF00248 Aldo/keto reductase family NEJAP_RS17900 PF17785 PUA-like domain NEJAP_RS17900 PF10672 S-adenosylmethionine-dependent methyltransferase NEJAP_RS17905 PF01597 Glycine cleavage H-protein NEJAP_RS17910 PF01571 Aminomethyltransferase folate-binding domain NEJAP_RS17910 PF08669 Glycine cleavage T-protein C-terminal barrel domain NEJAP_RS17915 PF01494 FAD binding domain NEJAP_RS17920 PF01494 FAD binding domain NEJAP_RS17925 PF00557 Metallopeptidase family M24 NEJAP_RS17925 PF05195 Aminopeptidase P, N-terminal domain NEJAP_RS17930 PF03695 Uncharacterised protein family (UPF0149) NEJAP_RS17940 PF05164 Cell division protein ZapA NEJAP_RS17950 PF01812 5-formyltetrahydrofolate cyclo-ligase family NEJAP_RS17965 PF04226 Transglycosylase associated protein NEJAP_RS17970 PF00072 Response regulator receiver domain NEJAP_RS17970 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS17975 PF00206 Lyase NEJAP_RS17975 PF14698 Argininosuccinate lyase C-terminal NEJAP_RS17980 PF03900 Porphobilinogen deaminase, C-terminal domain NEJAP_RS17980 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NEJAP_RS17985 PF02602 Uroporphyrinogen-III synthase HemD NEJAP_RS17990 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NEJAP_RS17995 PF07719 Tetratricopeptide repeat NEJAP_RS17995 PF07219 HemY protein N-terminus NEJAP_RS18000 PF03625 Domain of unknown function DUF302 NEJAP_RS18000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NEJAP_RS18010 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NEJAP_RS18015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS18015 PF07498 Rho termination factor, N-terminal domain NEJAP_RS18015 PF07497 Rho termination factor, RNA-binding domain NEJAP_RS18020 PF00085 Thioredoxin NEJAP_RS18025 PF02541 Ppx/GppA phosphatase family NEJAP_RS18030 PF01293 Phosphoenolpyruvate carboxykinase NEJAP_RS18035 PF01430 Hsp33 protein NEJAP_RS18040 PF01479 S4 domain NEJAP_RS18045 PF13419 Haloacid dehalogenase-like hydrolase NEJAP_RS18050 PF00293 NUDIX domain NEJAP_RS18060 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NEJAP_RS18060 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NEJAP_RS18070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NEJAP_RS18070 PF03466 LysR substrate binding domain NEJAP_RS18080 PF01557 Fumarylacetoacetate (FAA) hydrolase family NEJAP_RS18095 PF13472 GDSL-like Lipase/Acylhydrolase family NEJAP_RS18100 PF00005 ABC transporter NEJAP_RS18115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NEJAP_RS18120 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS18120 PF00585 C-terminal regulatory domain of Threonine dehydratase NEJAP_RS18125 PF00849 RNA pseudouridylate synthase NEJAP_RS18125 PF01479 S4 domain NEJAP_RS18135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS18140 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NEJAP_RS18145 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS18150 PF12729 Four helix bundle sensory module for signal transduction NEJAP_RS18150 PF00672 HAMP domain NEJAP_RS18150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS18155 PF00072 Response regulator receiver domain NEJAP_RS18155 PF00158 Sigma-54 interaction domain NEJAP_RS18155 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS18160 PF02743 Cache domain NEJAP_RS18160 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS18165 PF02887 Pyruvate kinase, alpha/beta domain NEJAP_RS18165 PF00224 Pyruvate kinase, barrel domain NEJAP_RS18170 PF09371 Tex-like protein N-terminal domain NEJAP_RS18170 PF17674 HHH domain NEJAP_RS18170 PF00575 S1 RNA binding domain NEJAP_RS18170 PF16921 Tex protein YqgF-like domain NEJAP_RS18175 PF04262 Glutamate-cysteine ligase NEJAP_RS18185 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NEJAP_RS18195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NEJAP_RS18195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NEJAP_RS18205 PF12848 ABC transporter NEJAP_RS18205 PF00005 ABC transporter NEJAP_RS18215 PF04607 Region found in RelA / SpoT proteins NEJAP_RS18215 PF02824 TGS domain NEJAP_RS18215 PF13291 ACT domain NEJAP_RS18220 PF01192 RNA polymerase Rpb6 NEJAP_RS18225 PF00625 Guanylate kinase NEJAP_RS18230 PF00196 Bacterial regulatory proteins, luxR family NEJAP_RS18230 PF00072 Response regulator receiver domain NEJAP_RS18235 PF00989 PAS fold NEJAP_RS18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS18235 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS18240 PF00501 AMP-binding enzyme NEJAP_RS18240 PF13193 AMP-binding enzyme C-terminal domain NEJAP_RS18250 PF01575 MaoC like domain NEJAP_RS18260 PF00106 short chain dehydrogenase NEJAP_RS18265 PF03707 Bacterial signalling protein N terminal repeat NEJAP_RS18265 PF00563 EAL domain NEJAP_RS18265 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS18270 PF00403 Heavy-metal-associated domain NEJAP_RS18275 PF13411 MerR HTH family regulatory protein NEJAP_RS18285 PF00092 von Willebrand factor type A domain NEJAP_RS18285 PF07584 Aerotolerance regulator N-terminal NEJAP_RS18290 PF00092 von Willebrand factor type A domain NEJAP_RS18290 PF07584 Aerotolerance regulator N-terminal NEJAP_RS18300 PF01882 Protein of unknown function DUF58 NEJAP_RS18305 PF07726 ATPase family associated with various cellular activities (AAA) NEJAP_RS18305 PF17863 AAA lid domain NEJAP_RS18325 PF00501 AMP-binding enzyme NEJAP_RS18325 PF01553 Acyltransferase NEJAP_RS18330 PF01381 Helix-turn-helix NEJAP_RS18365 PF00589 Phage integrase family NEJAP_RS18365 PF02899 Phage integrase, N-terminal SAM-like domain NEJAP_RS18380 PF01544 CorA-like Mg2+ transporter protein NEJAP_RS18395 PF08443 RimK-like ATP-grasp domain NEJAP_RS18395 PF18030 RimK PreATP-grasp domain NEJAP_RS18405 PF08443 RimK-like ATP-grasp domain NEJAP_RS18405 PF18030 RimK PreATP-grasp domain NEJAP_RS18460 PF10996 Beta-Casp domain NEJAP_RS18460 PF00753 Metallo-beta-lactamase superfamily NEJAP_RS18460 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NEJAP_RS18475 PF02661 Fic/DOC family NEJAP_RS18480 PF13356 Arm DNA-binding domain NEJAP_RS18480 PF00589 Phage integrase family NEJAP_RS18485 PF03755 YicC-like family, N-terminal region NEJAP_RS18485 PF08340 Domain of unknown function (DUF1732) NEJAP_RS18490 PF01138 3' exoribonuclease family, domain 1 NEJAP_RS18490 PF03725 3' exoribonuclease family, domain 2 NEJAP_RS18495 PF03372 Endonuclease/Exonuclease/phosphatase family NEJAP_RS18500 PF00156 Phosphoribosyl transferase domain NEJAP_RS18525 PF07963 Prokaryotic N-terminal methylation motif NEJAP_RS18535 PF00482 Type II secretion system (T2SS), protein F NEJAP_RS18540 PF00437 Type II/IV secretion system protein NEJAP_RS18550 PF01471 Putative peptidoglycan binding domain NEJAP_RS18550 PF13401 AAA domain NEJAP_RS18555 PF03958 Bacterial type II/III secretion system short domain NEJAP_RS18555 PF00263 Bacterial type II and III secretion system protein NEJAP_RS18615 PF00579 tRNA synthetases class I (W and Y) NEJAP_RS18620 PF01551 Peptidase family M23 NEJAP_RS18620 PF04225 Opacity-associated protein A LysM-like domain NEJAP_RS18625 PF03702 Anhydro-N-acetylmuramic acid kinase NEJAP_RS18630 PF01521 Iron-sulphur cluster biosynthesis NEJAP_RS18635 PF02774 Semialdehyde dehydrogenase, dimerisation domain NEJAP_RS18635 PF01118 Semialdehyde dehydrogenase, NAD binding domain NEJAP_RS18640 PF00654 Voltage gated chloride channel NEJAP_RS18645 PF02581 Thiamine monophosphate synthase NEJAP_RS18650 PF00202 Aminotransferase class-III NEJAP_RS18665 PF14814 Bifunctional transglycosylase second domain NEJAP_RS18665 PF00912 Transglycosylase NEJAP_RS18665 PF00905 Penicillin binding protein transpeptidase domain NEJAP_RS18675 PF00005 ABC transporter NEJAP_RS18680 PF01032 FecCD transport family NEJAP_RS18685 PF03544 Gram-negative bacterial TonB protein C-terminal NEJAP_RS18695 PF00155 Aminotransferase class I and II NEJAP_RS18700 PF01258 Prokaryotic dksA/traR C4-type zinc finger NEJAP_RS18705 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS18710 PF00072 Response regulator receiver domain NEJAP_RS18710 PF02954 Bacterial regulatory protein, Fis family NEJAP_RS18710 PF00158 Sigma-54 interaction domain NEJAP_RS18715 PF12627 Probable RNA and SrmB- binding site of polymerase A NEJAP_RS18715 PF12626 Polymerase A arginine-rich C-terminus NEJAP_RS18715 PF01743 Poly A polymerase head domain NEJAP_RS18720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NEJAP_RS18725 PF02548 Ketopantoate hydroxymethyltransferase NEJAP_RS18730 PF02569 Pantoate-beta-alanine ligase NEJAP_RS18735 PF02803 Thiolase, C-terminal domain NEJAP_RS18735 PF00108 Thiolase, N-terminal domain NEJAP_RS18745 PF00849 RNA pseudouridylate synthase NEJAP_RS18745 PF01479 S4 domain NEJAP_RS18750 PF05175 Methyltransferase small domain NEJAP_RS18750 PF08468 Methyltransferase small domain N-terminal NEJAP_RS18760 PF01138 3' exoribonuclease family, domain 1 NEJAP_RS18760 PF00575 S1 RNA binding domain NEJAP_RS18760 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NEJAP_RS18760 PF00013 KH domain NEJAP_RS18760 PF03725 3' exoribonuclease family, domain 2 NEJAP_RS18765 PF00312 Ribosomal protein S15 NEJAP_RS18770 PF01509 TruB family pseudouridylate synthase (N terminal domain) NEJAP_RS18770 PF16198 tRNA pseudouridylate synthase B C-terminal domain NEJAP_RS18770 PF09157 Pseudouridine synthase II TruB, C-terminal NEJAP_RS18775 PF02033 Ribosome-binding factor A NEJAP_RS18780 PF04760 Translation initiation factor IF-2, N-terminal region NEJAP_RS18780 PF08364 Bacterial translation initiation factor IF-2 associated region NEJAP_RS18780 PF11987 Translation-initiation factor 2 NEJAP_RS18780 PF00009 Elongation factor Tu GTP binding domain NEJAP_RS18785 PF13184 NusA-like KH domain NEJAP_RS18785 PF08529 NusA N-terminal domain NEJAP_RS18785 PF00575 S1 RNA binding domain NEJAP_RS18790 PF17384 RimP C-terminal SH3 domain NEJAP_RS18790 PF02576 RimP N-terminal domain NEJAP_RS18805 PF03840 Preprotein translocase SecG subunit NEJAP_RS18810 PF00121 Triosephosphate isomerase NEJAP_RS18815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NEJAP_RS18815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NEJAP_RS18815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NEJAP_RS18815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NEJAP_RS18820 PF00809 Pterin binding enzyme NEJAP_RS18825 PF17862 AAA+ lid domain NEJAP_RS18825 PF00004 ATPase family associated with various cellular activities (AAA) NEJAP_RS18825 PF06480 FtsH Extracellular NEJAP_RS18825 PF01434 Peptidase family M41 NEJAP_RS18830 PF01728 FtsJ-like methyltransferase NEJAP_RS18835 PF01985 CRS1 / YhbY (CRM) domain NEJAP_RS18840 PF03449 Transcription elongation factor, N-terminal NEJAP_RS18840 PF01272 Transcription elongation factor, GreA/GreB, C-term NEJAP_RS18845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NEJAP_RS18845 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NEJAP_RS18845 PF02142 MGS-like domain NEJAP_RS18850 PF00117 Glutamine amidotransferase class-I NEJAP_RS18850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NEJAP_RS18855 PF12729 Four helix bundle sensory module for signal transduction NEJAP_RS18855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NEJAP_RS18855 PF00672 HAMP domain NEJAP_RS18875 PF00902 Sec-independent protein translocase protein (TatC) NEJAP_RS18880 PF02416 mttA/Hcf106 family NEJAP_RS18885 PF02416 mttA/Hcf106 family NEJAP_RS18890 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NEJAP_RS18895 PF01502 Phosphoribosyl-AMP cyclohydrolase NEJAP_RS18900 PF03109 ABC1 family NEJAP_RS18905 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS18910 PF01323 DSBA-like thioredoxin domain NEJAP_RS18915 PF00034 Cytochrome c NEJAP_RS18920 PF01926 50S ribosome-binding GTPase NEJAP_RS18925 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NEJAP_RS18925 PF00476 DNA polymerase family A NEJAP_RS18925 PF01367 5'-3' exonuclease, C-terminal SAM fold NEJAP_RS18925 PF01612 3'-5' exonuclease NEJAP_RS18935 PF01636 Phosphotransferase enzyme family NEJAP_RS18940 PF13361 UvrD-like helicase C-terminal domain NEJAP_RS18940 PF00580 UvrD/REP helicase N-terminal domain NEJAP_RS18965 PF12849 PBP superfamily domain NEJAP_RS18970 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS18975 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS18980 PF00005 ABC transporter NEJAP_RS18985 PF01895 PhoU domain NEJAP_RS18990 PF01590 GAF domain NEJAP_RS18990 PF00360 Phytochrome region NEJAP_RS18990 PF00990 Diguanylate cyclase, GGDEF domain NEJAP_RS18990 PF00563 EAL domain NEJAP_RS19000 PF04345 Chorismate lyase NEJAP_RS19005 PF01040 UbiA prenyltransferase family NEJAP_RS19010 PF00486 Transcriptional regulatory protein, C terminal NEJAP_RS19010 PF00072 Response regulator receiver domain NEJAP_RS19015 PF11808 Phosphate regulon sensor protein PhoR NEJAP_RS19015 PF00989 PAS fold NEJAP_RS19015 PF00512 His Kinase A (phospho-acceptor) domain NEJAP_RS19015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NEJAP_RS19030 PF00107 Zinc-binding dehydrogenase NEJAP_RS19030 PF16884 N-terminal domain of oxidoreductase NEJAP_RS19065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS19080 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS19085 PF01380 SIS domain NEJAP_RS19085 PF01418 Helix-turn-helix domain, rpiR family NEJAP_RS19095 PF01645 Conserved region in glutamate synthase NEJAP_RS19100 PF01053 Cys/Met metabolism PLP-dependent enzyme NEJAP_RS19105 PF00291 Pyridoxal-phosphate dependent enzyme NEJAP_RS19110 PF00005 ABC transporter NEJAP_RS19115 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS19120 PF00528 Binding-protein-dependent transport system inner membrane component NEJAP_RS19125 PF00497 Bacterial extracellular solute-binding proteins, family 3 NEJAP_RS19130 PF03480 Bacterial extracellular solute-binding protein, family 7 NEJAP_RS19140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NEJAP_RS19145 PF00465 Iron-containing alcohol dehydrogenase NEJAP_RS19150 PF00171 Aldehyde dehydrogenase family NEJAP_RS19155 PF01614 Bacterial transcriptional regulator NEJAP_RS19155 PF09339 IclR helix-turn-helix domain NEJAP_RS19160 PF01380 SIS domain NEJAP_RS19165 PF00132 Bacterial transferase hexapeptide (six repeats) NEJAP_RS19165 PF12804 MobA-like NTP transferase domain NEJAP_RS19165 PF14602 Hexapeptide repeat of succinyl-transferase NEJAP_RS19175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NEJAP_RS19175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NEJAP_RS19180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS19180 PF02874 ATP synthase alpha/beta family, beta-barrel domain NEJAP_RS19185 PF00231 ATP synthase NEJAP_RS19190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NEJAP_RS19190 PF00306 ATP synthase alpha/beta chain, C terminal domain NEJAP_RS19190 PF02874 ATP synthase alpha/beta family, beta-barrel domain NEJAP_RS19195 PF00213 ATP synthase delta (OSCP) subunit NEJAP_RS19200 PF00430 ATP synthase B/B' CF(0) NEJAP_RS19205 PF00137 ATP synthase subunit C NEJAP_RS19210 PF00119 ATP synthase A chain NEJAP_RS19220 PF02195 ParB-like nuclease domain NEJAP_RS19220 PF17762 HTH domain found in ParB protein NEJAP_RS19225 PF13614 AAA domain NEJAP_RS19230 PF02527 rRNA small subunit methyltransferase G NEJAP_RS19235 PF01134 Glucose inhibited division protein A NEJAP_RS19235 PF13932 GidA associated domain NEJAP_RS19240 PF05199 GMC oxidoreductase NEJAP_RS19240 PF00732 GMC oxidoreductase NEJAP_RS19245 PF00912 Transglycosylase NEJAP_RS19255 PF00005 ABC transporter NEJAP_RS19260 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS19265 PF02653 Branched-chain amino acid transport system / permease component NEJAP_RS19270 PF01979 Amidohydrolase family NEJAP_RS19275 PF00156 Phosphoribosyl transferase domain NEJAP_RS19280 PF02608 ABC transporter substrate-binding protein PnrA-like NEJAP_RS19285 PF00962 Adenosine/AMP deaminase NEJAP_RS19290 PF01636 Phosphotransferase enzyme family NEJAP_RS19300 PF02798 Glutathione S-transferase, N-terminal domain NEJAP_RS19305 PF01926 50S ribosome-binding GTPase NEJAP_RS19305 PF12631 MnmE helical domain NEJAP_RS19305 PF10396 GTP-binding protein TrmE N-terminus NEJAP_RS19310 PF14849 YidC periplasmic domain NEJAP_RS19310 PF02096 60Kd inner membrane protein NEJAP_RS19315 PF00825 Ribonuclease P NEJAP_RS19320 PF00468 Ribosomal protein L34