locus-tag	class	description
DEJ54_RS00035	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEJ54_RS00035	COG0574	Belongs to the PEP-utilizing enzyme family
DEJ54_RS00055	COG1475	DNA binding
DEJ54_RS00080	COG0717	Belongs to the dCTP deaminase family
DEJ54_RS00150	COG0110	maltose O-acetyltransferase activity
DEJ54_RS00155	COG1695	Transcriptional regulator
DEJ54_RS00170	COG0726	polysaccharide deacetylase
DEJ54_RS00210	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DEJ54_RS00225	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DEJ54_RS00230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS00245	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DEJ54_RS00250	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DEJ54_RS00270	COG0803	Belongs to the bacterial solute-binding protein 9 family
DEJ54_RS00275	COG1121	(ABC) transporter
DEJ54_RS00280	COG1321	iron dependent repressor
DEJ54_RS00280	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ54_RS00285	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ54_RS00295	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS00300	COG1120	ATPase activity
DEJ54_RS00365	COG1238	metal cluster binding
DEJ54_RS00375	COG2132	Multicopper oxidase
DEJ54_RS00385	COG3938	Belongs to the proline racemase family
DEJ54_RS00395	COG3938	Belongs to the proline racemase family
DEJ54_RS00400	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS00420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS00425	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS00435	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS00445	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
DEJ54_RS00450	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DEJ54_RS00460	COG0583	DNA-binding transcription factor activity
DEJ54_RS00490	COG2199	diguanylate cyclase activity
DEJ54_RS00495	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DEJ54_RS00500	COG1349	DNA-binding transcription factor activity
DEJ54_RS00505	COG0434	BtpA family
DEJ54_RS00510	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS00530	COG1129	ABC transporter
DEJ54_RS00535	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS00540	COG2376	Dihydroxyacetone kinase
DEJ54_RS00575	COG2943	transferase activity, transferring hexosyl groups
DEJ54_RS00580	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
DEJ54_RS00585	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS00590	COG2723	6-phospho-beta-galactosidase activity
DEJ54_RS00595	COG1609	Transcriptional regulator
DEJ54_RS00605	COG1653	transport
DEJ54_RS00610	COG1175	transmembrane transport
DEJ54_RS00615	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS00620	COG0366	Alpha amylase catalytic
DEJ54_RS00625	COG3842	ATPase activity
DEJ54_RS00630	COG2771	luxR family
DEJ54_RS00645	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DEJ54_RS00650	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DEJ54_RS00655	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DEJ54_RS00665	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DEJ54_RS00675	COG4786	Flagellar basal body rod
DEJ54_RS00680	COG1157	protein secretion by the type III secretion system
DEJ54_RS00690	COG1815	bacterial-type flagellum-dependent cell motility
DEJ54_RS00695	COG1558	bacterial-type flagellum-dependent cell motility
DEJ54_RS00700	COG1677	Flagellar hook-basal body complex protein FliE
DEJ54_RS00705	COG4786	Flagellar basal body rod
DEJ54_RS00710	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
DEJ54_RS00715	COG1706	bacterial-type flagellum-dependent cell motility
DEJ54_RS00725	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
DEJ54_RS00735	COG1338	Plays a role in the flagellum-specific transport system
DEJ54_RS00740	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DEJ54_RS00745	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DEJ54_RS00750	COG1766	The M ring may be actively involved in energy transduction
DEJ54_RS00760	COG1360	Flagellar Motor Protein
DEJ54_RS00800	COG5442	Flagellar protein FlaF
DEJ54_RS00805	COG5443	negative regulation of bacterial-type flagellum assembly
DEJ54_RS00810	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DEJ54_RS00815	COG4794	Type iii secretion
DEJ54_RS00820	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DEJ54_RS00870	COG0154	amidase activity
DEJ54_RS00875	COG0583	DNA-binding transcription factor activity
DEJ54_RS00900	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS00910	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS00920	COG2738	Putative neutral zinc metallopeptidase
DEJ54_RS00930	COG5310	Homospermidine synthase
DEJ54_RS00955	COG3108	Peptidase M15
DEJ54_RS00960	COG0800	Aldolase
DEJ54_RS00965	COG3773	Cell wall hydrolase
DEJ54_RS00965	COG3409	Peptidoglycan-binding domain 1 protein
DEJ54_RS00970	COG1054	Belongs to the UPF0176 family
DEJ54_RS00980	COG1309	transcriptional regulator
DEJ54_RS00995	COG0725	ABC transporter, periplasmic molybdate-binding protein
DEJ54_RS01000	COG4149	molybdate abc transporter
DEJ54_RS01015	COG0737	Belongs to the 5'-nucleotidase family
DEJ54_RS01020	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DEJ54_RS01025	COG0330	HflC and HflK could
DEJ54_RS01030	COG1585	Membrane protein implicated in regulation of membrane protease activity
DEJ54_RS01050	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DEJ54_RS01055	COG2951	lytic endotransglycosylase activity
DEJ54_RS01075	COG0069	glutamate synthase activity
DEJ54_RS01075	COG0070	glutamate synthase
DEJ54_RS01075	COG0067	glutamate synthase
DEJ54_RS01090	COG3220	belongs to the UPF0276 family
DEJ54_RS01105	COG0071	Belongs to the small heat shock protein (HSP20) family
DEJ54_RS01110	COG2267	carboxylic ester hydrolase activity
DEJ54_RS01200	COG3844	kynureninase activity
DEJ54_RS01205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DEJ54_RS01210	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DEJ54_RS01240	COG2814	Major facilitator Superfamily
DEJ54_RS01255	COG0446	pyridine nucleotide-disulphide oxidoreductase
DEJ54_RS01255	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DEJ54_RS01265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS01275	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DEJ54_RS01350	COG5001	Diguanylate cyclase
DEJ54_RS01370	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS01380	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS01385	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS01390	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DEJ54_RS01400	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DEJ54_RS01405	COG1609	Transcriptional regulator
DEJ54_RS01410	COG1846	Transcriptional regulator
DEJ54_RS01420	COG0523	cobalamin synthesis protein
DEJ54_RS01445	COG0402	S-adenosylhomocysteine deaminase activity
DEJ54_RS01455	COG0583	DNA-binding transcription factor activity
DEJ54_RS01475	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DEJ54_RS01480	COG2080	2 iron, 2 sulfur cluster binding
DEJ54_RS01485	COG2351	hydroxyisourate hydrolase activity
DEJ54_RS01490	COG3648	Uricase
DEJ54_RS01490	COG3195	allantoin biosynthetic process
DEJ54_RS01495	COG3257	ureidoglycine aminohydrolase activity
DEJ54_RS01500	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
DEJ54_RS01515	COG0183	Belongs to the thiolase family
DEJ54_RS01520	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DEJ54_RS01525	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DEJ54_RS01530	COG1414	Transcriptional regulator
DEJ54_RS01545	COG2217	Heavy metal translocating P-type atpase
DEJ54_RS01550	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DEJ54_RS01555	COG2188	Transcriptional regulator
DEJ54_RS01560	COG2971	BadF BadG BcrA BcrD
DEJ54_RS01570	COG1178	ABC-type Fe3 transport system permease component
DEJ54_RS01575	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS01580	COG0673	inositol 2-dehydrogenase activity
DEJ54_RS01620	COG0174	glutamine synthetase
DEJ54_RS01625	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS01630	COG1454	alcohol dehydrogenase
DEJ54_RS01635	COG1042	CoA-binding domain protein
DEJ54_RS01635	COG0045	succinate-CoA ligase (ADP-forming) activity
DEJ54_RS01635	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DEJ54_RS01655	COG0601	transmembrane transport
DEJ54_RS01670	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS01680	COG3842	ATPase activity
DEJ54_RS01685	COG1176	ABC-type spermidine putrescine transport system, permease component I
DEJ54_RS01690	COG1177	transmembrane transport
DEJ54_RS01720	COG0154	amidase activity
DEJ54_RS01725	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DEJ54_RS01730	COG0583	DNA-binding transcription factor activity
DEJ54_RS01740	COG0367	asparagine synthase
DEJ54_RS01750	COG0318	PFAM AMP-dependent synthetase and ligase
DEJ54_RS01755	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DEJ54_RS01765	COG0010	Belongs to the arginase family
DEJ54_RS01775	COG0673	inositol 2-dehydrogenase activity
DEJ54_RS01790	COG2226	methyltransferase
DEJ54_RS01795	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DEJ54_RS01800	COG1215	transferase activity, transferring glycosyl groups
DEJ54_RS01805	COG3769	mannosylglycerate metabolic process
DEJ54_RS01820	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS01825	COG3842	ATPase activity
DEJ54_RS01835	COG1176	ABC-type spermidine putrescine transport system, permease component I
DEJ54_RS01850	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DEJ54_RS01855	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DEJ54_RS01860	COG1473	amidohydrolase
DEJ54_RS01865	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DEJ54_RS01875	COG3842	ATPase activity
DEJ54_RS01940	COG0765	amino acid transport
DEJ54_RS01955	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DEJ54_RS01960	COG3608	succinylglutamate desuccinylase aspartoacylase
DEJ54_RS01965	COG0251	oxidation-reduction process
DEJ54_RS01980	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS01985	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS01990	COG1129	ABC transporter
DEJ54_RS02005	COG1473	amidohydrolase
DEJ54_RS02015	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS02020	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS02025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS02030	COG0601	transmembrane transport
DEJ54_RS02035	COG0747	negative chemotaxis
DEJ54_RS02040	COG1737	Transcriptional regulator
DEJ54_RS02090	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS02100	COG0542	response to heat
DEJ54_RS02110	COG2890	protein-(glutamine-N5) methyltransferase activity
DEJ54_RS02115	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DEJ54_RS02125	COG0527	aspartate kinase activity
DEJ54_RS02130	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DEJ54_RS02150	COG1040	competence protein
DEJ54_RS02155	COG2226	methyltransferase
DEJ54_RS02170	COG0494	nUDIX hydrolase
DEJ54_RS02180	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DEJ54_RS02185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEJ54_RS02190	COG0653	protein targeting
DEJ54_RS02205	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS02210	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEJ54_RS02215	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DEJ54_RS02220	COG2086	electron transfer activity
DEJ54_RS02240	COG0300	oxidoreductase activity
DEJ54_RS02260	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEJ54_RS02290	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEJ54_RS02295	COG5001	Diguanylate cyclase
DEJ54_RS02310	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DEJ54_RS02315	COG0165	Argininosuccinate lyase
DEJ54_RS02325	COG0019	diaminopimelate decarboxylase activity
DEJ54_RS02335	COG0662	Cupin 2, conserved barrel domain protein
DEJ54_RS02355	COG2884	Cell division ATP-binding protein ftsE
DEJ54_RS02385	COG0287	Prephenate dehydrogenase
DEJ54_RS02390	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DEJ54_RS02395	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
DEJ54_RS02405	COG2226	methyltransferase
DEJ54_RS02410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEJ54_RS02425	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DEJ54_RS02430	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DEJ54_RS02435	COG1846	Transcriptional regulator
DEJ54_RS02465	COG1335	isochorismatase
DEJ54_RS02500	COG1802	Transcriptional regulator
DEJ54_RS02515	COG4120	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS02520	COG2835	tetraacyldisaccharide 4'-kinase activity
DEJ54_RS02550	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
DEJ54_RS02555	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS02570	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS02580	COG1414	Transcriptional regulator
DEJ54_RS02600	COG3964	amidohydrolase
DEJ54_RS02620	COG1921	L-seryl-tRNASec selenium transferase activity
DEJ54_RS02625	COG1473	amidohydrolase
DEJ54_RS02640	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS02645	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DEJ54_RS02660	COG2358	TRAP transporter, solute receptor (TAXI family
DEJ54_RS02675	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS02695	COG4191	Histidine kinase
DEJ54_RS02700	COG0583	DNA-binding transcription factor activity
DEJ54_RS02705	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS02710	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS02715	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS02720	COG3386	PFAM SMP-30 Gluconolaconase
DEJ54_RS02735	COG2258	MOSC domain
DEJ54_RS02770	COG0156	8-amino-7-oxononanoate synthase activity
DEJ54_RS02775	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS02785	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS02790	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
DEJ54_RS02800	COG2986	histidine ammonia-lyase
DEJ54_RS02805	COG1228	amidohydrolase
DEJ54_RS02825	COG2885	chlorophyll binding
DEJ54_RS02840	COG0848	biopolymer transport protein
DEJ54_RS02850	COG0824	Thioesterase
DEJ54_RS02855	COG2255	four-way junction helicase activity
DEJ54_RS02860	COG0632	four-way junction helicase activity
DEJ54_RS02865	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DEJ54_RS02880	COG0318	PFAM AMP-dependent synthetase and ligase
DEJ54_RS02890	COG0352	thiamine-phosphate diphosphorylase activity
DEJ54_RS02900	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DEJ54_RS02905	COG0483	inositol monophosphate 1-phosphatase activity
DEJ54_RS02940	COG1132	(ABC) transporter
DEJ54_RS02945	COG0254	rRNA binding
DEJ54_RS02955	COG0217	transcriptional regulatory protein
DEJ54_RS02965	COG1253	flavin adenine dinucleotide binding
DEJ54_RS02970	COG1692	metallophosphoesterase
DEJ54_RS03010	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DEJ54_RS03035	COG0181	hydroxymethylbilane synthase activity
DEJ54_RS03040	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DEJ54_RS03045	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DEJ54_RS03060	COG2264	protein methyltransferase activity
DEJ54_RS03075	COG0659	secondary active sulfate transmembrane transporter activity
DEJ54_RS03080	COG2917	probably involved in intracellular septation
DEJ54_RS03085	COG0552	protein localization to endoplasmic reticulum
DEJ54_RS03090	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEJ54_RS03095	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DEJ54_RS03110	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DEJ54_RS03115	COG0039	L-malate dehydrogenase activity
DEJ54_RS03120	COG0045	succinate-CoA ligase (ADP-forming) activity
DEJ54_RS03125	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DEJ54_RS03130	COG0567	Dehydrogenase, E1 component
DEJ54_RS03135	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ54_RS03155	COG4974	Belongs to the 'phage' integrase family
DEJ54_RS03160	COG0488	(ABC) transporter
DEJ54_RS03180	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
DEJ54_RS03195	COG1329	Transcriptional regulator
DEJ54_RS03200	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DEJ54_RS03235	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DEJ54_RS03240	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DEJ54_RS03245	COG0142	geranyltranstransferase activity
DEJ54_RS03250	COG0784	Response regulator, receiver
DEJ54_RS03250	COG5002	protein histidine kinase activity
DEJ54_RS03250	COG2205	protein histidine kinase activity
DEJ54_RS03255	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DEJ54_RS03260	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS03265	COG1309	transcriptional regulator
DEJ54_RS03285	COG2223	nitrite transmembrane transporter activity
DEJ54_RS03290	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
DEJ54_RS03295	COG0683	leucine binding
DEJ54_RS03340	COG2824	Alkylphosphonate utilization operon protein PhnA
DEJ54_RS03345	COG0205	6-phosphofructokinase activity
DEJ54_RS03350	COG0589	response to stress
DEJ54_RS03355	COG0659	secondary active sulfate transmembrane transporter activity
DEJ54_RS03360	COG0513	Belongs to the DEAD box helicase family
DEJ54_RS03370	COG0798	PFAM Bile acid sodium symporter
DEJ54_RS03440	COG4536	flavin adenine dinucleotide binding
DEJ54_RS03445	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DEJ54_RS03450	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DEJ54_RS03465	COG0825	malonyl-CoA metabolic process
DEJ54_RS03470	COG1126	abc transporter atp-binding protein
DEJ54_RS03495	COG0425	Belongs to the sulfur carrier protein TusA family
DEJ54_RS03500	COG0523	cobalamin synthesis protein
DEJ54_RS03505	COG1686	Belongs to the peptidase S11 family
DEJ54_RS03510	COG1473	amidohydrolase
DEJ54_RS03520	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS03535	COG0765	amino acid transport
DEJ54_RS03540	COG1126	abc transporter atp-binding protein
DEJ54_RS03560	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DEJ54_RS03565	COG1917	Cupin 2, conserved barrel domain protein
DEJ54_RS03570	COG5285	phytanoyl-CoA dioxygenase
DEJ54_RS03575	COG0527	aspartate kinase activity
DEJ54_RS03585	COG0400	carboxylic ester hydrolase activity
DEJ54_RS03590	COG0346	lactoylglutathione lyase activity
DEJ54_RS03600	COG1597	lipid kinase activity
DEJ54_RS03605	COG0783	Belongs to the Dps family
DEJ54_RS03630	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DEJ54_RS03650	COG0784	Response regulator, receiver
DEJ54_RS03665	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS03670	COG0704	Plays a role in the regulation of phosphate uptake
DEJ54_RS03675	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DEJ54_RS03685	COG0573	inorganic phosphate transmembrane transporter activity
DEJ54_RS03695	COG0784	Response regulator, receiver
DEJ54_RS03695	COG5002	protein histidine kinase activity
DEJ54_RS03695	COG2205	protein histidine kinase activity
DEJ54_RS03725	COG0564	pseudouridine synthase activity
DEJ54_RS03730	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DEJ54_RS03740	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DEJ54_RS03750	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DEJ54_RS03765	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS03770	COG4953	penicillin-binding protein 1C
DEJ54_RS03775	COG2373	Large extracellular alpha-helical protein
DEJ54_RS03785	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS03795	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS03800	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEJ54_RS03805	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DEJ54_RS03840	COG4638	Rieske (2fe-2S)
DEJ54_RS03850	COG0318	PFAM AMP-dependent synthetase and ligase
DEJ54_RS03865	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DEJ54_RS03870	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS03875	COG0583	DNA-binding transcription factor activity
DEJ54_RS03910	COG3743	rRNA binding
DEJ54_RS03910	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DEJ54_RS03915	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DEJ54_RS03920	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DEJ54_RS03925	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DEJ54_RS03930	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DEJ54_RS03935	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DEJ54_RS03940	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DEJ54_RS03945	COG0799	negative regulation of ribosome biogenesis
DEJ54_RS03950	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DEJ54_RS03960	COG0793	Belongs to the peptidase S41A family
DEJ54_RS03965	COG2861	carbohydrate metabolic process
DEJ54_RS03980	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DEJ54_RS03985	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DEJ54_RS03990	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DEJ54_RS03995	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DEJ54_RS04000	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DEJ54_RS04020	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DEJ54_RS04045	COG0495	leucyl-tRNA aminoacylation
DEJ54_RS04060	COG5425	PFAM Usg family protein
DEJ54_RS04065	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEJ54_RS04080	COG0501	Belongs to the peptidase M48B family
DEJ54_RS04100	COG2207	Transcriptional regulator
DEJ54_RS04125	COG0138	bifunctional purine biosynthesis protein purh
DEJ54_RS04135	COG2902	Dehydrogenase
DEJ54_RS04150	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS04165	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DEJ54_RS04170	COG2261	transglycosylase associated protein
DEJ54_RS04170	COG1674	ftsk spoiiie
DEJ54_RS04175	COG0004	ammonium transporteR
DEJ54_RS04180	COG0347	Belongs to the P(II) protein family
DEJ54_RS04185	COG1946	Acyl-CoA thioesterase
DEJ54_RS04190	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DEJ54_RS04205	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DEJ54_RS04210	COG2814	Major facilitator Superfamily
DEJ54_RS04230	COG2009	succinate dehydrogenase
DEJ54_RS04260	COG3655	Transcriptional regulator
DEJ54_RS04285	COG2010	Cytochrome c
DEJ54_RS04290	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DEJ54_RS04300	COG0765	amino acid transport
DEJ54_RS04305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS04310	COG0335	large ribosomal subunit rRNA binding
DEJ54_RS04320	COG0336	Belongs to the RNA methyltransferase TrmD family
DEJ54_RS04325	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DEJ54_RS04355	COG0126	phosphoglycerate kinase activity
DEJ54_RS04360	COG3588	fructose-bisphosphate aldolase
DEJ54_RS04425	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DEJ54_RS04430	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DEJ54_RS04435	COG3755	Protein conserved in bacteria
DEJ54_RS04440	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DEJ54_RS04445	COG0457	Tetratricopeptide repeat
DEJ54_RS04450	COG0469	pyruvate kinase activity
DEJ54_RS04470	COG3750	Belongs to the UPF0335 family
DEJ54_RS04475	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS04480	COG0583	DNA-binding transcription factor activity
DEJ54_RS04485	COG2390	Transcriptional regulator
DEJ54_RS04495	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEJ54_RS04505	COG3732	PTS system glucitol sorbitol-specific
DEJ54_RS04525	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEJ54_RS04530	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ54_RS04535	COG0022	dehydrogenase e1 component
DEJ54_RS04540	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEJ54_RS04545	COG0673	inositol 2-dehydrogenase activity
DEJ54_RS04570	COG1872	DUF167
DEJ54_RS04580	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DEJ54_RS04600	COG1704	LemA family
DEJ54_RS04610	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
DEJ54_RS04615	COG0288	reversible hydration of carbon dioxide
DEJ54_RS04620	COG2814	Major facilitator Superfamily
DEJ54_RS04640	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEJ54_RS04640	COG3453	Protein conserved in bacteria
DEJ54_RS04645	COG1217	gtp-binding protein TYPA
DEJ54_RS04650	COG1280	lysine exporter protein (LysE YggA)
DEJ54_RS04655	COG1280	lysine exporter protein (LysE YggA)
DEJ54_RS04665	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DEJ54_RS04675	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DEJ54_RS04680	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DEJ54_RS04685	COG4133	protoheme IX ABC transporter activity
DEJ54_RS04690	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DEJ54_RS04710	COG0670	Belongs to the BI1 family
DEJ54_RS04715	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DEJ54_RS04720	COG4181	ATPase activity
DEJ54_RS04735	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DEJ54_RS04740	COG2154	pterin-4-alpha-carbinolamine dehydratase
DEJ54_RS04745	COG3339	Conserved Protein
DEJ54_RS04755	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DEJ54_RS04765	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DEJ54_RS04770	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
DEJ54_RS04775	COG2188	Transcriptional regulator
DEJ54_RS04835	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS04845	COG1024	Enoyl-CoA hydratase
DEJ54_RS04850	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS04860	COG3483	tryptophan 2,3-dioxygenase activity
DEJ54_RS04870	COG0559	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS04880	COG1129	ABC transporter
DEJ54_RS04895	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ54_RS04900	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ54_RS04905	COG1121	(ABC) transporter
DEJ54_RS04920	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEJ54_RS04920	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEJ54_RS04930	COG0277	FAD linked oxidase domain protein
DEJ54_RS04950	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DEJ54_RS04955	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ54_RS04960	COG0037	tRNA processing
DEJ54_RS04990	COG0251	oxidation-reduction process
DEJ54_RS05000	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DEJ54_RS05010	COG0228	four-way junction DNA binding
DEJ54_RS05020	COG0287	Prephenate dehydrogenase
DEJ54_RS05020	COG1605	Chorismate mutase
DEJ54_RS05025	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DEJ54_RS05065	COG0137	argininosuccinate synthase activity
DEJ54_RS05080	COG1846	Transcriptional regulator
DEJ54_RS05085	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DEJ54_RS05105	COG0357	Ribosomal RNA small subunit methyltransferase G
DEJ54_RS05110	COG0445	tRNA wobble uridine modification
DEJ54_RS05115	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DEJ54_RS05120	COG1331	Highly conserved protein containing a thioredoxin domain
DEJ54_RS05125	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DEJ54_RS05130	COG1981	membrane
DEJ54_RS05135	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DEJ54_RS05140	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DEJ54_RS05145	COG0424	maF-like protein
DEJ54_RS05150	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DEJ54_RS05155	COG0237	dephospho-CoA kinase activity
DEJ54_RS05165	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
DEJ54_RS05170	COG3030	protein affecting phage T7 exclusion by the F plasmid
DEJ54_RS05180	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
DEJ54_RS05185	COG2840	Smr protein MutS2
DEJ54_RS05190	COG3800	Transcriptional regulator
DEJ54_RS05190	COG1396	sequence-specific DNA binding
DEJ54_RS05200	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DEJ54_RS05210	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DEJ54_RS05215	COG0131	Imidazoleglycerol-phosphate dehydratase
DEJ54_RS05235	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DEJ54_RS05250	COG0140	phosphoribosyl-ATP diphosphatase activity
DEJ54_RS05255	COG1072	(Pantothenic acid kinase))
DEJ54_RS05265	COG1652	LysM domain
DEJ54_RS05275	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
DEJ54_RS05280	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS05285	COG2205	protein histidine kinase activity
DEJ54_RS05295	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DEJ54_RS05295	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DEJ54_RS05300	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DEJ54_RS05305	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DEJ54_RS05310	COG2205	protein histidine kinase activity
DEJ54_RS05315	COG0802	atpase or kinase
DEJ54_RS05320	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DEJ54_RS05325	COG2887	Belongs to the helicase family. UvrD subfamily
DEJ54_RS05330	COG1074	ATP-dependent DNA helicase activity
DEJ54_RS05340	COG1968	undecaprenyl-diphosphatase activity
DEJ54_RS05350	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DEJ54_RS05365	COG0837	glucose binding
DEJ54_RS05370	COG1132	(ABC) transporter
DEJ54_RS05375	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DEJ54_RS05395	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DEJ54_RS05400	COG5001	Diguanylate cyclase
DEJ54_RS05405	COG0189	ligase activity
DEJ54_RS05410	COG0606	chelatase, subunit chli
DEJ54_RS05425	COG1515	deoxyribonuclease V activity
DEJ54_RS05435	COG0590	tRNA wobble adenosine to inosine editing
DEJ54_RS05465	COG0284	orotidine-5'-phosphate decarboxylase activity
DEJ54_RS05475	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DEJ54_RS05480	COG0484	heat shock protein binding
DEJ54_RS05490	COG0443	Heat shock 70 kDa protein
DEJ54_RS05505	COG0072	phenylalanine-tRNA ligase activity
DEJ54_RS05505	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEJ54_RS05515	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DEJ54_RS05525	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DEJ54_RS05530	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DEJ54_RS05540	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DEJ54_RS05560	COG0135	phosphoribosylanthranilate isomerase activity
DEJ54_RS05565	COG0133	tryptophan synthase activity
DEJ54_RS05575	COG0159	tryptophan synthase activity
DEJ54_RS05580	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DEJ54_RS05615	COG0481	GTPase activity
DEJ54_RS05640	COG1309	transcriptional regulator
DEJ54_RS05650	COG1131	(ABC) transporter
DEJ54_RS05655	COG0842	Transport permease protein
DEJ54_RS05685	COG1363	Peptidase, m42
DEJ54_RS05700	COG2358	TRAP transporter, solute receptor (TAXI family
DEJ54_RS05705	COG0756	dUTP diphosphatase activity
DEJ54_RS05710	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DEJ54_RS05715	COG0450	alkyl hydroperoxide reductase
DEJ54_RS05740	COG0346	lactoylglutathione lyase activity
DEJ54_RS05745	COG1741	Belongs to the pirin family
DEJ54_RS05750	COG0477	Major facilitator Superfamily
DEJ54_RS05760	COG0519	Catalyzes the synthesis of GMP from XMP
DEJ54_RS05765	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DEJ54_RS05780	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DEJ54_RS05790	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DEJ54_RS05795	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DEJ54_RS05805	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
DEJ54_RS05820	COG1079	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS05830	COG3845	ABC transporter
DEJ54_RS05835	COG2900	Belongs to the SlyX family
DEJ54_RS05855	COG0539	negative regulation of cytoplasmic translation
DEJ54_RS05860	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DEJ54_RS05865	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS05870	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DEJ54_RS05890	COG0601	transmembrane transport
DEJ54_RS05895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS05900	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS05905	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS05910	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS05915	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS05920	COG0589	response to stress
DEJ54_RS05930	COG0583	DNA-binding transcription factor activity
DEJ54_RS05935	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS05940	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS05945	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS05950	COG0601	transmembrane transport
DEJ54_RS05955	COG0747	negative chemotaxis
DEJ54_RS05965	COG0318	PFAM AMP-dependent synthetase and ligase
DEJ54_RS05970	COG2971	BadF BadG BcrA BcrD
DEJ54_RS05975	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DEJ54_RS05980	COG1737	Transcriptional regulator
DEJ54_RS05995	COG2072	flavoprotein involved in K transport
DEJ54_RS06000	COG0418	dihydroorotase activity
DEJ54_RS06020	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DEJ54_RS06025	COG3383	formate dehydrogenase (NAD+) activity
DEJ54_RS06040	COG0583	DNA-binding transcription factor activity
DEJ54_RS06045	COG0489	protein tyrosine kinase activity
DEJ54_RS06050	COG1024	Enoyl-CoA hydratase
DEJ54_RS06065	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DEJ54_RS06070	COG0166	Belongs to the GPI family
DEJ54_RS06075	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
DEJ54_RS06080	COG0747	negative chemotaxis
DEJ54_RS06085	COG0601	transmembrane transport
DEJ54_RS06090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS06105	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DEJ54_RS06110	COG0454	-acetyltransferase
DEJ54_RS06120	COG4941	Belongs to the sigma-70 factor family
DEJ54_RS06125	COG2814	Major facilitator Superfamily
DEJ54_RS06130	COG2814	Major facilitator Superfamily
DEJ54_RS06135	COG1053	succinate dehydrogenase
DEJ54_RS06140	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DEJ54_RS06185	COG0446	pyridine nucleotide-disulphide oxidoreductase
DEJ54_RS06200	COG1309	transcriptional regulator
DEJ54_RS06205	COG1024	Enoyl-CoA hydratase
DEJ54_RS06215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DEJ54_RS06225	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS06230	COG1120	ATPase activity
DEJ54_RS06245	COG4988	ABC transporter
DEJ54_RS06250	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DEJ54_RS06260	COG1294	oxidase, subunit
DEJ54_RS06270	COG3264	Mechanosensitive ion channel
DEJ54_RS06270	COG1196	nuclear chromosome segregation
DEJ54_RS06275	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DEJ54_RS06280	COG1214	PFAM Peptidase M22, glycoprotease
DEJ54_RS06285	COG0456	acetyltransferase
DEJ54_RS06295	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEJ54_RS06300	COG1702	phosphate starvation-inducible protein PhoH
DEJ54_RS06305	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DEJ54_RS06315	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DEJ54_RS06320	COG1396	sequence-specific DNA binding
DEJ54_RS06325	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DEJ54_RS06330	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DEJ54_RS06335	COG0779	Required for maturation of 30S ribosomal subunits
DEJ54_RS06340	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DEJ54_RS06340	COG0195	Participates in both transcription termination and antitermination
DEJ54_RS06350	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DEJ54_RS06355	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DEJ54_RS06360	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DEJ54_RS06370	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DEJ54_RS06375	COG1185	polyribonucleotide nucleotidyltransferase activity
DEJ54_RS06380	COG2813	Specifically methylates the guanine in position
DEJ54_RS06385	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DEJ54_RS06395	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DEJ54_RS06400	COG0735	belongs to the Fur family
DEJ54_RS06420	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DEJ54_RS06430	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DEJ54_RS06435	COG0268	Binds directly to 16S ribosomal RNA
DEJ54_RS06440	COG1024	Enoyl-CoA hydratase
DEJ54_RS06445	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DEJ54_RS06480	COG4964	Belongs to the GSP D family
DEJ54_RS06515	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DEJ54_RS06525	COG0791	NLP P60 protein
DEJ54_RS06530	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DEJ54_RS06535	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS06540	COG4239	(ABC) transporter, permease
DEJ54_RS06545	COG4174	ABC transporter (Permease)
DEJ54_RS06555	COG4166	transmembrane transport
DEJ54_RS06560	COG3474	cytochrome
DEJ54_RS06565	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
DEJ54_RS06575	COG2816	NAD+ diphosphatase activity
DEJ54_RS06590	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DEJ54_RS06595	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DEJ54_RS06600	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DEJ54_RS06615	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS06625	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DEJ54_RS06635	COG0175	sulfate reduction
DEJ54_RS06640	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DEJ54_RS06650	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DEJ54_RS06650	COG1648	precorrin-2 dehydrogenase activity
DEJ54_RS06660	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS06670	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEJ54_RS06680	COG1744	ABC transporter substrate-binding protein PnrA-like
DEJ54_RS06710	COG1846	Transcriptional regulator
DEJ54_RS06720	COG1442	glycosyl transferase family 8
DEJ54_RS06725	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DEJ54_RS06730	COG0602	queuosine metabolic process
DEJ54_RS06735	COG0720	synthase
DEJ54_RS06750	COG0747	negative chemotaxis
DEJ54_RS06755	COG1917	Cupin 2, conserved barrel domain protein
DEJ54_RS06760	COG0601	transmembrane transport
DEJ54_RS06765	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS06770	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS06775	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS06790	COG2205	protein histidine kinase activity
DEJ54_RS06790	COG2198	Histidine kinase
DEJ54_RS06790	COG0784	Response regulator, receiver
DEJ54_RS06800	COG0601	transmembrane transport
DEJ54_RS06805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS06810	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS06815	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS06830	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DEJ54_RS06860	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ54_RS06865	COG1121	(ABC) transporter
DEJ54_RS06885	COG2124	cytochrome p450
DEJ54_RS06890	COG0792	nuclease activity
DEJ54_RS06895	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DEJ54_RS06905	COG0625	glutathione transferase activity
DEJ54_RS06910	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DEJ54_RS06915	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DEJ54_RS06925	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DEJ54_RS06930	COG1420	regulation of RNA biosynthetic process
DEJ54_RS06935	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DEJ54_RS06945	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS06970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS06980	COG0071	Belongs to the small heat shock protein (HSP20) family
DEJ54_RS06995	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DEJ54_RS07000	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DEJ54_RS07005	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DEJ54_RS07010	COG1137	ATPase activity
DEJ54_RS07015	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DEJ54_RS07025	COG0616	signal peptide processing
DEJ54_RS07030	COG0776	regulation of translation
DEJ54_RS07040	COG2423	ornithine cyclodeaminase activity
DEJ54_RS07045	COG0116	Belongs to the methyltransferase superfamily
DEJ54_RS07045	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEJ54_RS07055	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DEJ54_RS07060	COG0604	alcohol dehydrogenase
DEJ54_RS07065	COG5002	protein histidine kinase activity
DEJ54_RS07065	COG2205	protein histidine kinase activity
DEJ54_RS07065	COG0784	Response regulator, receiver
DEJ54_RS07080	COG0280	phosphate acetyltransferase
DEJ54_RS07080	COG0281	malic enzyme
DEJ54_RS07085	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DEJ54_RS07100	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
DEJ54_RS07115	COG0180	Tryptophanyl-tRNA synthetase
DEJ54_RS07125	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DEJ54_RS07130	COG1388	LysM domain
DEJ54_RS07130	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS07155	COG1024	Enoyl-CoA hydratase
DEJ54_RS07155	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEJ54_RS07160	COG0183	Belongs to the thiolase family
DEJ54_RS07165	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS07180	COG0730	response to heat
DEJ54_RS07195	COG1201	RNA secondary structure unwinding
DEJ54_RS07200	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DEJ54_RS07205	COG3454	Phosphonate metabolism
DEJ54_RS07210	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DEJ54_RS07215	COG3639	organic phosphonate transmembrane transporter activity
DEJ54_RS07220	COG3639	organic phosphonate transmembrane transporter activity
DEJ54_RS07230	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DEJ54_RS07255	COG0436	Aminotransferase
DEJ54_RS07265	COG1793	dna ligase
DEJ54_RS07295	COG4778	phosphonate C-P lyase system protein PhnL
DEJ54_RS07300	COG4107	phosphonate C-P lyase system protein PhnK
DEJ54_RS07305	COG3627	carbon phosphorus lyase activity
DEJ54_RS07310	COG3626	phosphonate metabolism
DEJ54_RS07315	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
DEJ54_RS07320	COG3624	Phosphonate C-P lyase system protein PhnG
DEJ54_RS07325	COG2188	Transcriptional regulator
DEJ54_RS07330	COG4134	Bacterial extracellular solute-binding protein
DEJ54_RS07335	COG4135	transport system, permease component
DEJ54_RS07340	COG4136	ATPase activity
DEJ54_RS07345	COG1643	Atp-dependent helicase
DEJ54_RS07355	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
DEJ54_RS07370	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DEJ54_RS07390	COG2197	response regulator
DEJ54_RS07400	COG2326	polyphosphate kinase activity
DEJ54_RS07405	COG5002	protein histidine kinase activity
DEJ54_RS07410	COG0704	Plays a role in the regulation of phosphate uptake
DEJ54_RS07420	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DEJ54_RS07425	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DEJ54_RS07435	COG2967	ApaG domain
DEJ54_RS07450	COG0717	Belongs to the dCTP deaminase family
DEJ54_RS07500	COG1309	transcriptional regulator
DEJ54_RS07555	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS07565	COG0747	negative chemotaxis
DEJ54_RS07585	COG0583	DNA-binding transcription factor activity
DEJ54_RS07630	COG0657	acetylesterase activity
DEJ54_RS07705	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS07710	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS07720	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS07730	COG2721	sulfolactate sulfo-lyase activity
DEJ54_RS07740	COG0179	Fumarylacetoacetate (FAA) hydrolase
DEJ54_RS07745	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS07755	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS07770	COG0534	Mate efflux family protein
DEJ54_RS07775	COG0167	dihydroorotate dehydrogenase activity
DEJ54_RS07800	COG0784	Response regulator, receiver
DEJ54_RS07800	COG2205	protein histidine kinase activity
DEJ54_RS07805	COG1970	mechanosensitive ion channel activity
DEJ54_RS07810	COG0156	8-amino-7-oxononanoate synthase activity
DEJ54_RS07820	COG0367	asparagine synthase
DEJ54_RS07825	COG0189	ligase activity
DEJ54_RS07825	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DEJ54_RS07830	COG1363	Peptidase, m42
DEJ54_RS07840	COG1522	sequence-specific DNA binding
DEJ54_RS07845	COG2814	Major facilitator Superfamily
DEJ54_RS07850	COG0251	oxidation-reduction process
DEJ54_RS07860	COG3852	Histidine kinase
DEJ54_RS07865	COG4191	Histidine kinase
DEJ54_RS07865	COG0784	Response regulator, receiver
DEJ54_RS07900	COG1609	Transcriptional regulator
DEJ54_RS07910	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS07920	COG1879	ABC-type sugar transport system periplasmic component
DEJ54_RS07945	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS07955	COG2274	protein secretion by the type I secretion system
DEJ54_RS08005	COG3706	GGDEF domain
DEJ54_RS08015	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS08020	COG0747	negative chemotaxis
DEJ54_RS08030	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS08045	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DEJ54_RS08065	COG4771	TonB-dependent receptor
DEJ54_RS08075	COG4607	ABC-type enterochelin transport system periplasmic component
DEJ54_RS08080	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS08085	COG4605	iron ion homeostasis
DEJ54_RS08090	COG4604	ABC transporter, ATP-binding protein
DEJ54_RS08105	COG2863	cytochrome
DEJ54_RS08135	COG0174	glutamine synthetase
DEJ54_RS08145	COG0411	ABC transporter
DEJ54_RS08170	COG1335	isochorismatase
DEJ54_RS08175	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DEJ54_RS08190	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS08210	COG1957	nucleoside hydrolase
DEJ54_RS08225	COG0765	amino acid transport
DEJ54_RS08235	COG0765	amino acid transport
DEJ54_RS08240	COG0765	amino acid transport
DEJ54_RS08250	COG1446	asparaginase
DEJ54_RS08255	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS08265	COG1940	carbohydrate kinase activity
DEJ54_RS08270	COG3142	Participates in the control of copper homeostasis
DEJ54_RS08290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS08305	COG0765	amino acid transport
DEJ54_RS08310	COG0765	amino acid transport
DEJ54_RS08315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS08320	COG0583	DNA-binding transcription factor activity
DEJ54_RS08335	COG4191	Histidine kinase
DEJ54_RS08360	COG0406	alpha-ribazole phosphatase activity
DEJ54_RS08375	COG0076	glutamate decarboxylase activity
DEJ54_RS08380	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
DEJ54_RS08385	COG1289	transmembrane transporter activity
DEJ54_RS08405	COG1228	amidohydrolase
DEJ54_RS08415	COG0387	Pfam Sodium calcium exchanger
DEJ54_RS08420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS08425	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS08430	COG2205	protein histidine kinase activity
DEJ54_RS08435	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DEJ54_RS08440	COG0831	urea catabolic process
DEJ54_RS08450	COG0804	urea catabolic process
DEJ54_RS08455	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
DEJ54_RS08460	COG0830	nickel cation binding
DEJ54_RS08465	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DEJ54_RS08470	COG0829	nickel cation binding
DEJ54_RS08475	COG4413	Urea transporter
DEJ54_RS08495	COG0601	transmembrane transport
DEJ54_RS08500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS08510	COG1124	(ABC) transporter
DEJ54_RS08590	COG0579	oxidoreductase
DEJ54_RS08630	COG0582	viral genome integration into host DNA
DEJ54_RS08640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS08665	COG1522	sequence-specific DNA binding
DEJ54_RS08680	COG0443	Heat shock 70 kDa protein
DEJ54_RS08695	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
DEJ54_RS08715	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DEJ54_RS08730	COG0129	dihydroxy-acid dehydratase activity
DEJ54_RS08735	COG0363	glucosamine-6-phosphate deaminase activity
DEJ54_RS08740	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DEJ54_RS08745	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS08755	COG0471	metal ion transport
DEJ54_RS08755	COG3273	potassium ion transport
DEJ54_RS08760	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS08765	COG0174	glutamine synthetase
DEJ54_RS08780	COG2224	Isocitrate lyase
DEJ54_RS08800	COG0174	glutamine synthetase
DEJ54_RS08810	COG3842	ATPase activity
DEJ54_RS08815	COG1176	ABC-type spermidine putrescine transport system, permease component I
DEJ54_RS08820	COG1177	transmembrane transport
DEJ54_RS08830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEJ54_RS08835	COG1178	ABC-type Fe3 transport system permease component
DEJ54_RS08840	COG1840	ABC-type Fe3 transport system, periplasmic component
DEJ54_RS08845	COG2205	protein histidine kinase activity
DEJ54_RS08850	COG5490	Phasin protein
DEJ54_RS08870	COG2010	Cytochrome c
DEJ54_RS08875	COG2132	Multicopper oxidase
DEJ54_RS08895	COG1570	exodeoxyribonuclease VII activity
DEJ54_RS08900	COG0583	DNA-binding transcription factor activity
DEJ54_RS08910	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DEJ54_RS08915	COG0424	maF-like protein
DEJ54_RS08920	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DEJ54_RS08925	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DEJ54_RS08940	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DEJ54_RS08965	COG3775	system Galactitol-specific IIC component
DEJ54_RS08980	COG0584	glycerophosphoryl diester phosphodiesterase
DEJ54_RS08990	COG1178	ABC-type Fe3 transport system permease component
DEJ54_RS08995	COG3842	ATPase activity
DEJ54_RS09005	COG0483	inositol monophosphate 1-phosphatase activity
DEJ54_RS09010	COG1609	Transcriptional regulator
DEJ54_RS09020	COG2264	protein methyltransferase activity
DEJ54_RS09025	COG0583	DNA-binding transcription factor activity
DEJ54_RS09035	COG1289	transmembrane transporter activity
DEJ54_RS09045	COG4191	Histidine kinase
DEJ54_RS09050	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DEJ54_RS09060	COG2259	Doxx family
DEJ54_RS09070	COG0387	Pfam Sodium calcium exchanger
DEJ54_RS09075	COG0459	protein refolding
DEJ54_RS09080	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DEJ54_RS09085	COG2818	Glycosylase
DEJ54_RS09090	COG1388	LysM domain
DEJ54_RS09090	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS09095	COG0247	lactate metabolic process
DEJ54_RS09110	COG0277	FAD linked oxidase domain protein
DEJ54_RS09115	COG0277	FAD linked oxidase domain protein
DEJ54_RS09125	COG2186	Transcriptional regulator
DEJ54_RS09130	COG0247	lactate metabolic process
DEJ54_RS09145	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DEJ54_RS09175	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DEJ54_RS09180	COG0594	ribonuclease P activity
DEJ54_RS09185	COG0706	membrane insertase activity
DEJ54_RS09195	COG0702	epimerase
DEJ54_RS09200	COG0110	maltose O-acetyltransferase activity
DEJ54_RS09215	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DEJ54_RS09220	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DEJ54_RS09225	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
DEJ54_RS09240	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DEJ54_RS09250	COG0789	Transcriptional regulator
DEJ54_RS09290	COG2171	N-acyltransferase activity
DEJ54_RS09300	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS09310	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
DEJ54_RS09310	COG3264	Mechanosensitive ion channel
DEJ54_RS09320	COG1522	sequence-specific DNA binding
DEJ54_RS09325	COG0101	tRNA pseudouridine synthase activity
DEJ54_RS09335	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DEJ54_RS09340	COG0242	peptide deformylase activity
DEJ54_RS09360	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DEJ54_RS09365	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
DEJ54_RS09375	COG0124	histidyl-tRNA synthetase
DEJ54_RS09390	COG0196	riboflavin kinase activity
DEJ54_RS09395	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DEJ54_RS09405	COG0590	tRNA wobble adenosine to inosine editing
DEJ54_RS09420	COG0612	Peptidase, M16
DEJ54_RS09425	COG0612	Peptidase, M16
DEJ54_RS09430	COG1752	Esterase of the alpha-beta hydrolase superfamily
DEJ54_RS09435	COG0475	glutathione-regulated potassium exporter activity
DEJ54_RS09435	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DEJ54_RS09440	COG0312	modulator of DNA gyrase
DEJ54_RS09460	COG1519	Transferase
DEJ54_RS09465	COG1663	tetraacyldisaccharide 4'-kinase activity
DEJ54_RS09475	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DEJ54_RS09485	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS09495	COG0156	8-amino-7-oxononanoate synthase activity
DEJ54_RS09500	COG1063	alcohol dehydrogenase
DEJ54_RS09510	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
DEJ54_RS09545	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS09565	COG1024	Enoyl-CoA hydratase
DEJ54_RS09565	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEJ54_RS09570	COG0596	Alpha beta hydrolase
DEJ54_RS09580	COG3246	L-lysine catabolic process to acetate
DEJ54_RS09590	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS09605	COG0589	response to stress
DEJ54_RS09630	COG2010	Cytochrome c
DEJ54_RS09650	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DEJ54_RS09660	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DEJ54_RS09695	COG4717	serine-type aminopeptidase activity
DEJ54_RS09700	COG0420	3'-5' exonuclease activity
DEJ54_RS09705	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS09710	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS09720	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS09725	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS09735	COG0179	Fumarylacetoacetate (FAA) hydrolase
DEJ54_RS09745	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DEJ54_RS09790	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DEJ54_RS09805	COG2226	methyltransferase
DEJ54_RS09855	COG0179	Fumarylacetoacetate (FAA) hydrolase
DEJ54_RS09865	COG0559	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS09875	COG3842	ATPase activity
DEJ54_RS09890	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DEJ54_RS09895	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DEJ54_RS09905	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DEJ54_RS09915	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS09925	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS09950	COG1204	response to ionizing radiation
DEJ54_RS09965	COG1475	DNA binding
DEJ54_RS10000	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DEJ54_RS10005	COG0477	Major facilitator Superfamily
DEJ54_RS10015	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DEJ54_RS10025	COG0583	DNA-binding transcription factor activity
DEJ54_RS10030	COG0753	catalase activity
DEJ54_RS10035	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DEJ54_RS10035	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DEJ54_RS10050	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DEJ54_RS10050	COG0519	Catalyzes the synthesis of GMP from XMP
DEJ54_RS10055	COG1393	Belongs to the ArsC family
DEJ54_RS10060	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DEJ54_RS10080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DEJ54_RS10090	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DEJ54_RS10095	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DEJ54_RS10110	COG0438	transferase activity, transferring glycosyl groups
DEJ54_RS10120	COG0489	protein tyrosine kinase activity
DEJ54_RS10120	COG3206	protein involved in exopolysaccharide biosynthesis
DEJ54_RS10155	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DEJ54_RS10185	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
DEJ54_RS10185	COG2273	Hydrolase Family 16
DEJ54_RS10205	COG2197	response regulator
DEJ54_RS10210	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DEJ54_RS10220	COG1129	ABC transporter
DEJ54_RS10225	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS10235	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS10235	COG3347	Dehydrogenase
DEJ54_RS10240	COG2390	Transcriptional regulator
DEJ54_RS10250	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DEJ54_RS10265	COG1160	GTP binding
DEJ54_RS10280	COG0356	it plays a direct role in the translocation of protons across the membrane
DEJ54_RS10285	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DEJ54_RS10290	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DEJ54_RS10295	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DEJ54_RS10300	COG1309	transcriptional regulator
DEJ54_RS10310	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DEJ54_RS10320	COG0521	Mo-molybdopterin cofactor biosynthetic process
DEJ54_RS10325	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DEJ54_RS10350	COG0142	geranyltranstransferase activity
DEJ54_RS10360	COG0752	glycyl-tRNA synthetase alpha subunit
DEJ54_RS10375	COG0751	glycine-tRNA ligase activity
DEJ54_RS10395	COG0009	L-threonylcarbamoyladenylate synthase
DEJ54_RS10415	COG2076	Multidrug Resistance protein
DEJ54_RS10430	COG0151	Belongs to the GarS family
DEJ54_RS10440	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS10450	COG0259	pyridoxamine-phosphate oxidase activity
DEJ54_RS10460	COG0484	heat shock protein binding
DEJ54_RS10465	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DEJ54_RS10470	COG0406	alpha-ribazole phosphatase activity
DEJ54_RS10480	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DEJ54_RS10490	COG0123	including yeast histone deacetylase and acetoin utilization protein
DEJ54_RS10495	COG1722	exodeoxyribonuclease VII activity
DEJ54_RS10500	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DEJ54_RS10510	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DEJ54_RS10520	COG0312	modulator of DNA gyrase
DEJ54_RS10535	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DEJ54_RS10540	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DEJ54_RS10545	COG0109	protoheme IX farnesyltransferase activity
DEJ54_RS10550	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
DEJ54_RS10565	COG3346	SURF1 family
DEJ54_RS10570	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DEJ54_RS10575	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DEJ54_RS10585	COG0678	peroxiredoxin activity
DEJ54_RS10585	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DEJ54_RS10595	COG1678	Uncharacterized ACR, COG1678
DEJ54_RS10600	COG5001	Diguanylate cyclase
DEJ54_RS10605	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DEJ54_RS10610	COG0612	Peptidase, M16
DEJ54_RS10625	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEJ54_RS10640	COG1194	a g-specific adenine glycosylase
DEJ54_RS10655	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DEJ54_RS10660	COG1196	nuclear chromosome segregation
DEJ54_RS10685	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEJ54_RS10685	COG0574	Belongs to the PEP-utilizing enzyme family
DEJ54_RS10705	COG1268	BioY protein
DEJ54_RS10720	COG0662	Cupin 2, conserved barrel domain protein
DEJ54_RS10720	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
DEJ54_RS10740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DEJ54_RS10750	COG0175	sulfate reduction
DEJ54_RS10770	COG0587	DNA-directed DNA polymerase activity
DEJ54_RS10810	COG1278	Cold shock
DEJ54_RS10820	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS10825	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DEJ54_RS10830	COG1309	transcriptional regulator
DEJ54_RS10860	COG3654	unkown
DEJ54_RS10880	COG0433	COG0433 Predicted ATPase
DEJ54_RS10885	COG1388	LysM domain
DEJ54_RS10885	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS10900	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DEJ54_RS10910	COG2010	Cytochrome c
DEJ54_RS10920	COG2111	Na H antiporter
DEJ54_RS10920	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DEJ54_RS10925	COG2111	Na H antiporter
DEJ54_RS10930	COG1006	Multisubunit Na H antiporter MnhC subunit
DEJ54_RS10935	COG0651	ATP synthesis coupled electron transport
DEJ54_RS10940	COG1863	multisubunit Na H antiporter MnhE subunit
DEJ54_RS10945	COG2212	antiporter activity
DEJ54_RS10950	COG1320	monovalent cation:proton antiporter activity
DEJ54_RS10955	COG4957	zinc ion binding
DEJ54_RS10975	COG2166	iron-sulfur cluster assembly
DEJ54_RS10985	COG2205	protein histidine kinase activity
DEJ54_RS11015	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DEJ54_RS11085	COG4235	cytochrome complex assembly
DEJ54_RS11090	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DEJ54_RS11095	COG1138	Cytochrome C-type biogenesis protein
DEJ54_RS11100	COG3088	subunit of a heme lyase
DEJ54_RS11115	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS11125	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DEJ54_RS11130	COG2205	protein histidine kinase activity
DEJ54_RS11130	COG2202	Pas domain
DEJ54_RS11135	COG0308	aminopeptidase N
DEJ54_RS11185	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DEJ54_RS11190	COG0625	glutathione transferase activity
DEJ54_RS11205	COG0583	DNA-binding transcription factor activity
DEJ54_RS11215	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEJ54_RS11220	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEJ54_RS11225	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS11230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS11235	COG1120	ATPase activity
DEJ54_RS11260	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DEJ54_RS11265	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS11275	COG1335	isochorismatase
DEJ54_RS11280	COG2814	Major facilitator Superfamily
DEJ54_RS11345	COG0741	lytic transglycosylase activity
DEJ54_RS11350	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DEJ54_RS11355	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DEJ54_RS11360	COG1573	uracil-dna glycosylase
DEJ54_RS11370	COG1758	RNA polymerase activity
DEJ54_RS11400	COG0736	holo-[acyl-carrier-protein] synthase activity
DEJ54_RS11405	COG0681	Belongs to the peptidase S26 family
DEJ54_RS11410	COG0571	ribonuclease III activity
DEJ54_RS11415	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DEJ54_RS11420	COG1381	Involved in DNA repair and RecF pathway recombination
DEJ54_RS11430	COG1595	DNA-templated transcription, initiation
DEJ54_RS11440	COG0668	transmembrane transport
DEJ54_RS11445	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
DEJ54_RS11470	COG2816	NAD+ diphosphatase activity
DEJ54_RS11480	COG2135	peptidase activity
DEJ54_RS11485	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS11495	COG0215	cysteine-tRNA ligase activity
DEJ54_RS11515	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEJ54_RS11540	COG5265	(ABC) transporter
DEJ54_RS11545	COG0688	phosphatidylethanolamine metabolic process
DEJ54_RS11550	COG1183	phosphatidylcholine synthase activity
DEJ54_RS11560	COG4221	oxidoreductase activity
DEJ54_RS11565	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DEJ54_RS11580	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DEJ54_RS11590	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DEJ54_RS11595	COG0359	binds to the 23S rRNA
DEJ54_RS11605	COG0360	Binds together with S18 to 16S ribosomal RNA
DEJ54_RS11615	COG2378	regulation of single-species biofilm formation
DEJ54_RS11620	COG0842	Transport permease protein
DEJ54_RS11625	COG1131	(ABC) transporter
DEJ54_RS11635	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DEJ54_RS11655	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DEJ54_RS11660	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DEJ54_RS11665	COG1561	YicC-like family, N-terminal region
DEJ54_RS11670	COG0194	GDP metabolic process
DEJ54_RS11675	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DEJ54_RS11680	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DEJ54_RS11690	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DEJ54_RS11705	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DEJ54_RS11720	COG0488	(ABC) transporter
DEJ54_RS11740	COG0105	UTP biosynthetic process
DEJ54_RS11750	COG0314	molybdopterin synthase activity
DEJ54_RS11760	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DEJ54_RS11765	COG0322	excinuclease ABC activity
DEJ54_RS11800	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DEJ54_RS11805	COG0243	molybdopterin cofactor binding
DEJ54_RS11815	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DEJ54_RS11820	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DEJ54_RS11830	COG0628	permease
DEJ54_RS11850	COG0582	viral genome integration into host DNA
DEJ54_RS11925	COG3750	Belongs to the UPF0335 family
DEJ54_RS11960	COG0250	Participates in transcription elongation, termination and antitermination
DEJ54_RS11995	COG0740	serine-type endopeptidase activity
DEJ54_RS12175	COG0668	transmembrane transport
DEJ54_RS12185	COG2169	Transcriptional regulator
DEJ54_RS12285	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
DEJ54_RS12380	COG1278	Cold shock
DEJ54_RS12390	COG3239	Fatty acid desaturase
DEJ54_RS12430	COG0288	reversible hydration of carbon dioxide
DEJ54_RS12460	COG1802	Transcriptional regulator
DEJ54_RS12465	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS12480	COG4948	Mandelate Racemase Muconate Lactonizing
DEJ54_RS12490	COG0626	cystathionine gamma-synthase activity
DEJ54_RS12495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS12500	COG4597	amino acid ABC transporter
DEJ54_RS12505	COG0765	amino acid transport
DEJ54_RS12510	COG1126	abc transporter atp-binding protein
DEJ54_RS12525	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DEJ54_RS12530	COG0248	Ppx GppA phosphatase
DEJ54_RS12535	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DEJ54_RS12540	COG0477	Major facilitator Superfamily
DEJ54_RS12545	COG1136	(ABC) transporter
DEJ54_RS12550	COG0577	efflux transmembrane transporter activity
DEJ54_RS12550	COG1136	(ABC) transporter
DEJ54_RS12570	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DEJ54_RS12585	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DEJ54_RS12590	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DEJ54_RS12595	COG2183	response to ionizing radiation
DEJ54_RS12605	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
DEJ54_RS12610	COG0471	metal ion transport
DEJ54_RS12610	COG3273	potassium ion transport
DEJ54_RS12625	COG0113	porphobilinogen synthase activity
DEJ54_RS12645	COG2989	Protein conserved in bacteria
DEJ54_RS12655	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DEJ54_RS12660	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEJ54_RS12660	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEJ54_RS12670	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DEJ54_RS12675	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DEJ54_RS12680	COG2814	Major facilitator Superfamily
DEJ54_RS12685	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
DEJ54_RS12690	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DEJ54_RS12705	COG0416	fatty acid biosynthetic process
DEJ54_RS12710	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DEJ54_RS12715	COG0776	regulation of translation
DEJ54_RS12790	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DEJ54_RS12790	COG2755	lipolytic protein G-D-S-L family
DEJ54_RS12800	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS12805	COG1136	(ABC) transporter
DEJ54_RS12855	COG1612	heme a metabolic process
DEJ54_RS12860	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DEJ54_RS12865	COG0010	Belongs to the arginase family
DEJ54_RS12870	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DEJ54_RS12875	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DEJ54_RS12885	COG1024	Enoyl-CoA hydratase
DEJ54_RS12915	COG2124	cytochrome p450
DEJ54_RS12920	COG0740	serine-type endopeptidase activity
DEJ54_RS12925	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DEJ54_RS12935	COG0776	regulation of translation
DEJ54_RS12945	COG0456	acetyltransferase
DEJ54_RS12960	COG3706	GGDEF domain
DEJ54_RS12990	COG0697	spore germination
DEJ54_RS12995	COG0346	lactoylglutathione lyase activity
DEJ54_RS13010	COG3214	Protein conserved in bacteria
DEJ54_RS13015	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ54_RS13025	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ54_RS13035	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DEJ54_RS13040	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DEJ54_RS13050	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DEJ54_RS13055	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ54_RS13065	COG0713	ATP synthesis coupled electron transport
DEJ54_RS13080	COG1007	ATP synthesis coupled electron transport
DEJ54_RS13095	COG0346	lactoylglutathione lyase activity
DEJ54_RS13110	COG0442	prolyl-tRNA aminoacylation
DEJ54_RS13120	COG1136	(ABC) transporter
DEJ54_RS13125	COG0405	Gamma-glutamyltransferase
DEJ54_RS13130	COG0321	lipoyl(octanoyl) transferase activity
DEJ54_RS13210	COG0668	transmembrane transport
DEJ54_RS13230	COG3473	Maleate cis-trans isomerase
DEJ54_RS13240	COG1115	amino acid carrier protein
DEJ54_RS13250	COG0517	IMP dehydrogenase activity
DEJ54_RS13250	COG4175	Glycine betaine
DEJ54_RS13255	COG4176	ABC-type proline glycine betaine transport system permease component
DEJ54_RS13260	COG2113	Glycine betaine
DEJ54_RS13270	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
DEJ54_RS13275	COG2239	Acts as a magnesium transporter
DEJ54_RS13280	COG2271	Major facilitator Superfamily
DEJ54_RS13300	COG0656	L-ascorbic acid biosynthetic process
DEJ54_RS13310	COG2885	chlorophyll binding
DEJ54_RS13315	COG2313	pseudouridylate synthase activity
DEJ54_RS13320	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS13325	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DEJ54_RS13330	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DEJ54_RS13350	COG0538	isocitrate dehydrogenase activity
DEJ54_RS13360	COG2249	NAD(P)H dehydrogenase (quinone) activity
DEJ54_RS13365	COG5002	protein histidine kinase activity
DEJ54_RS13365	COG2176	DNA-directed DNA polymerase activity
DEJ54_RS13375	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DEJ54_RS13400	COG0463	Glycosyl transferase, family 2
DEJ54_RS13405	COG0037	tRNA processing
DEJ54_RS13410	COG2814	Major facilitator Superfamily
DEJ54_RS13415	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DEJ54_RS13425	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DEJ54_RS13430	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DEJ54_RS13460	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DEJ54_RS13465	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DEJ54_RS13485	COG2514	catechol 2,3-dioxygenase activity
DEJ54_RS13490	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DEJ54_RS13505	COG3191	aminopeptidase activity
DEJ54_RS13515	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DEJ54_RS13535	COG3608	succinylglutamate desuccinylase aspartoacylase
DEJ54_RS13535	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DEJ54_RS13560	COG0534	Mate efflux family protein
DEJ54_RS13570	COG0646	methionine synthase
DEJ54_RS13570	COG1410	methionine synthase
DEJ54_RS13600	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS13605	COG1492	cobalamin metabolic process
DEJ54_RS13630	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS13640	COG0747	negative chemotaxis
DEJ54_RS13645	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS13665	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DEJ54_RS13670	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DEJ54_RS13675	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DEJ54_RS13700	COG1858	cytochrome C peroxidase
DEJ54_RS13705	COG1522	sequence-specific DNA binding
DEJ54_RS13710	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DEJ54_RS13710	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DEJ54_RS13710	COG0506	proline dehydrogenase activity
DEJ54_RS13725	COG0848	biopolymer transport protein
DEJ54_RS13730	COG0811	peptide transport
DEJ54_RS13750	COG3720	iron ion transport
DEJ54_RS13760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS13765	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DEJ54_RS13770	COG1959	2 iron, 2 sulfur cluster binding
DEJ54_RS13790	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS13795	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS13800	COG1522	sequence-specific DNA binding
DEJ54_RS13805	COG2423	ornithine cyclodeaminase activity
DEJ54_RS13810	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DEJ54_RS13815	COG0006	proline dipeptidase activity
DEJ54_RS13830	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS13835	COG3842	ATPase activity
DEJ54_RS13840	COG0165	Argininosuccinate lyase
DEJ54_RS13905	COG2204	response regulator
DEJ54_RS13915	COG2223	nitrite transmembrane transporter activity
DEJ54_RS13920	COG1446	asparaginase
DEJ54_RS13935	COG2304	oxidoreductase activity
DEJ54_RS13960	COG1704	LemA family
DEJ54_RS13970	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DEJ54_RS13975	COG0730	response to heat
DEJ54_RS13990	COG0557	exoribonuclease II activity
DEJ54_RS13995	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DEJ54_RS13995	COG1754	DNA topoisomerase type I activity
DEJ54_RS14005	COG0758	DNA mediated transformation
DEJ54_RS14010	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DEJ54_RS14015	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DEJ54_RS14020	COG0540	Belongs to the ATCase OTCase family
DEJ54_RS14025	COG1960	acyl-CoA dehydrogenase activity
DEJ54_RS14045	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DEJ54_RS14050	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DEJ54_RS14055	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEJ54_RS14065	COG1434	Gram-negative-bacterium-type cell wall biogenesis
DEJ54_RS14070	COG1760	l-serine dehydratase
DEJ54_RS14085	COG0484	heat shock protein binding
DEJ54_RS14090	COG1686	Belongs to the peptidase S11 family
DEJ54_RS14095	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DEJ54_RS14115	COG0537	adenosine 5'-monophosphoramidase activity
DEJ54_RS14145	COG0052	Belongs to the universal ribosomal protein uS2 family
DEJ54_RS14150	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DEJ54_RS14155	COG0528	UMP kinase activity
DEJ54_RS14160	COG0233	cytoplasmic translational termination
DEJ54_RS14165	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DEJ54_RS14170	COG0575	Belongs to the CDS family
DEJ54_RS14175	COG0750	zinc metalloprotease
DEJ54_RS14180	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DEJ54_RS14185	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DEJ54_RS14190	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DEJ54_RS14195	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DEJ54_RS14205	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DEJ54_RS14220	COG0372	Belongs to the citrate synthase family
DEJ54_RS14225	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEJ54_RS14230	COG2333	competence protein COMEC
DEJ54_RS14230	COG0658	competence protein
DEJ54_RS14240	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DEJ54_RS14245	COG0629	single-stranded DNA binding
DEJ54_RS14255	COG0303	'Molybdopterin
DEJ54_RS14260	COG0315	cyclic pyranopterin monophosphate synthase activity
DEJ54_RS14265	COG0134	indole-3-glycerol-phosphate synthase activity
DEJ54_RS14270	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DEJ54_RS14280	COG0149	triose-phosphate isomerase activity
DEJ54_RS14290	COG0504	CTP synthase activity
DEJ54_RS14300	COG2877	3-deoxy-8-phosphooctulonate synthase activity
DEJ54_RS14305	COG0148	phosphopyruvate hydratase activity
DEJ54_RS14310	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
DEJ54_RS14315	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEJ54_RS14320	COG0022	dehydrogenase e1 component
DEJ54_RS14320	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ54_RS14325	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ54_RS14340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DEJ54_RS14350	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DEJ54_RS14355	COG2867	negative regulation of translational initiation
DEJ54_RS14360	COG1546	Belongs to the CinA family
DEJ54_RS14365	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DEJ54_RS14365	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DEJ54_RS14375	COG3852	Histidine kinase
DEJ54_RS14380	COG2204	response regulator
DEJ54_RS14385	COG5000	phosphorelay sensor kinase activity
DEJ54_RS14390	COG2204	response regulator
DEJ54_RS14395	COG0569	domain protein
DEJ54_RS14400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DEJ54_RS14405	COG1923	regulation of RNA biosynthetic process
DEJ54_RS14410	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DEJ54_RS14415	COG3956	TIGRFAM MazG family protein
DEJ54_RS14445	COG1686	Belongs to the peptidase S11 family
DEJ54_RS14450	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DEJ54_RS14460	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEJ54_RS14465	COG0084	hydrolase, TatD family'
DEJ54_RS14480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS14490	COG2223	nitrite transmembrane transporter activity
DEJ54_RS14495	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
DEJ54_RS14500	COG1140	nitrate reductase beta subunit
DEJ54_RS14505	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
DEJ54_RS14510	COG2181	nitrate reductase activity
DEJ54_RS14515	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEJ54_RS14535	COG0521	Mo-molybdopterin cofactor biosynthetic process
DEJ54_RS14545	COG0826	peptidase U32
DEJ54_RS14555	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS14565	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS14585	COG4221	oxidoreductase activity
DEJ54_RS14590	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DEJ54_RS14605	COG1595	DNA-templated transcription, initiation
DEJ54_RS14610	COG3806	Anti-sigma factor
DEJ54_RS14635	COG0800	Aldolase
DEJ54_RS14640	COG3734	2-keto-3-deoxy-galactonokinase
DEJ54_RS14670	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
DEJ54_RS14690	COG1079	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS14695	COG4603	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS14700	COG3845	ABC transporter
DEJ54_RS14705	COG1183	phosphatidylcholine synthase activity
DEJ54_RS14725	COG0679	Auxin Efflux Carrier
DEJ54_RS14740	COG4166	transmembrane transport
DEJ54_RS14750	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DEJ54_RS14760	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DEJ54_RS14770	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DEJ54_RS14775	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DEJ54_RS14780	COG0785	Cytochrome C biogenesis protein
DEJ54_RS14795	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DEJ54_RS14830	COG2308	Evidence 4 Homologs of previously reported genes of
DEJ54_RS14835	COG0343	queuine tRNA-ribosyltransferase activity
DEJ54_RS14840	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DEJ54_RS14855	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DEJ54_RS14860	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DEJ54_RS14865	COG2095	MarC family integral membrane protein
DEJ54_RS14870	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DEJ54_RS14875	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DEJ54_RS14875	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DEJ54_RS14880	COG0347	Belongs to the P(II) protein family
DEJ54_RS14885	COG0174	glutamine synthetase
DEJ54_RS14900	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DEJ54_RS14920	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DEJ54_RS14925	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DEJ54_RS14935	COG0203	ribosomal protein L17
DEJ54_RS14940	COG0202	RNA polymerase activity
DEJ54_RS14945	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DEJ54_RS14950	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DEJ54_RS14955	COG0563	adenylate kinase activity
DEJ54_RS14960	COG0201	protein transport
DEJ54_RS14965	COG0200	Binds to the 23S rRNA
DEJ54_RS14970	COG1841	ribosomal large subunit assembly
DEJ54_RS14975	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DEJ54_RS14980	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DEJ54_RS14985	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DEJ54_RS14990	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DEJ54_RS14995	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DEJ54_RS15000	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DEJ54_RS15005	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DEJ54_RS15010	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DEJ54_RS15015	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DEJ54_RS15020	COG0255	Belongs to the universal ribosomal protein uL29 family
DEJ54_RS15025	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DEJ54_RS15030	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DEJ54_RS15035	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DEJ54_RS15045	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DEJ54_RS15050	COG0089	rRNA binding
DEJ54_RS15055	COG0088	Forms part of the polypeptide exit tunnel
DEJ54_RS15060	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DEJ54_RS15070	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DEJ54_RS15075	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DEJ54_RS15080	COG0049	tRNA binding
DEJ54_RS15085	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DEJ54_RS15105	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DEJ54_RS15110	COG0085	RNA polymerase activity
DEJ54_RS15115	COG0222	ribosome binding
DEJ54_RS15120	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DEJ54_RS15125	COG0081	regulation of translation
DEJ54_RS15130	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DEJ54_RS15140	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DEJ54_RS15150	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DEJ54_RS15200	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEJ54_RS15235	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DEJ54_RS15250	COG0316	Belongs to the HesB IscA family
DEJ54_RS15255	COG2151	metal-sulfur cluster biosynthetic enzyme
DEJ54_RS15260	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DEJ54_RS15265	COG0719	Fe-S assembly protein
DEJ54_RS15270	COG0396	ATPase activity
DEJ54_RS15275	COG0719	Fe-S assembly protein
DEJ54_RS15285	COG2945	thiolester hydrolase activity
DEJ54_RS15290	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DEJ54_RS15300	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DEJ54_RS15305	COG0739	heme binding
DEJ54_RS15315	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DEJ54_RS15320	COG0860	N-Acetylmuramoyl-L-alanine amidase
DEJ54_RS15325	COG1530	ribonuclease E activity
DEJ54_RS15335	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DEJ54_RS15335	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DEJ54_RS15340	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DEJ54_RS15345	COG0511	ligase activity, forming carbon-carbon bonds
DEJ54_RS15350	COG0439	Biotin carboxylase
DEJ54_RS15355	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DEJ54_RS15375	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEJ54_RS15380	COG3811	Belongs to the UPF0386 family
DEJ54_RS15385	COG0516	GMP reductase activity
DEJ54_RS15385	COG0517	IMP dehydrogenase activity
DEJ54_RS15440	COG1024	Enoyl-CoA hydratase
DEJ54_RS15450	COG0596	Alpha beta hydrolase
DEJ54_RS15460	COG1278	Cold shock
DEJ54_RS15465	COG0346	lactoylglutathione lyase activity
DEJ54_RS15470	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DEJ54_RS15480	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DEJ54_RS15505	COG3106	COG3106 Predicted ATPase
DEJ54_RS15510	COG3768	UPF0283 membrane protein
DEJ54_RS15525	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DEJ54_RS15530	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DEJ54_RS15540	COG0633	Ferredoxin
DEJ54_RS15570	COG1127	ABC transporter
DEJ54_RS15575	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DEJ54_RS15580	COG4948	Mandelate Racemase Muconate Lactonizing
DEJ54_RS15590	COG0281	malic enzyme
DEJ54_RS15590	COG0280	phosphate acetyltransferase
DEJ54_RS15600	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DEJ54_RS15600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEJ54_RS15610	COG0640	Transcriptional regulator
DEJ54_RS15620	COG0740	serine-type endopeptidase activity
DEJ54_RS15640	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
DEJ54_RS15660	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DEJ54_RS15665	COG0546	phosphoglycolate phosphatase activity
DEJ54_RS15680	COG3706	GGDEF domain
DEJ54_RS15735	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DEJ54_RS15750	COG1846	Transcriptional regulator
DEJ54_RS15760	COG2223	nitrite transmembrane transporter activity
DEJ54_RS15780	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DEJ54_RS15785	COG0697	spore germination
DEJ54_RS15790	COG2814	Major facilitator Superfamily
DEJ54_RS15795	COG0746	molybdenum cofactor guanylyltransferase activity
DEJ54_RS15805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS15820	COG2084	Dehydrogenase
DEJ54_RS15830	COG1522	sequence-specific DNA binding
DEJ54_RS15835	COG1573	uracil-dna glycosylase
DEJ54_RS15840	COG0625	glutathione transferase activity
DEJ54_RS15850	COG2205	protein histidine kinase activity
DEJ54_RS15850	COG2202	Pas domain
DEJ54_RS15855	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DEJ54_RS15900	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DEJ54_RS15915	COG0784	Response regulator, receiver
DEJ54_RS15935	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DEJ54_RS15940	COG0501	Belongs to the peptidase M48B family
DEJ54_RS15945	COG4269	membrane
DEJ54_RS15960	COG4770	biotin carboxylase activity
DEJ54_RS15965	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DEJ54_RS15970	COG1671	Belongs to the UPF0178 family
DEJ54_RS15975	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
DEJ54_RS15985	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DEJ54_RS15990	COG0509	glycine decarboxylation via glycine cleavage system
DEJ54_RS15995	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DEJ54_RS15995	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DEJ54_RS16000	COG0187	DNA topoisomerase II activity
DEJ54_RS16020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DEJ54_RS16025	COG0778	Nitroreductase
DEJ54_RS16035	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DEJ54_RS16045	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DEJ54_RS16055	COG0302	gtp cyclohydrolase
DEJ54_RS16060	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DEJ54_RS16065	COG1752	Esterase of the alpha-beta hydrolase superfamily
DEJ54_RS16075	COG1494	fructose-1,6-bisphosphatase
DEJ54_RS16085	COG0436	Aminotransferase
DEJ54_RS16095	COG3243	poly(R)-hydroxyalkanoic acid synthase
DEJ54_RS16115	COG1489	DNA binding
DEJ54_RS16120	COG0024	Methionine aminopeptidase
DEJ54_RS16125	COG2003	Belongs to the UPF0758 family
DEJ54_RS16155	COG0544	peptidyl-prolyl cis-trans isomerase activity
DEJ54_RS16175	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DEJ54_RS16200	COG1862	Preprotein translocase
DEJ54_RS16215	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DEJ54_RS16220	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DEJ54_RS16225	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DEJ54_RS16230	COG0805	protein transport
DEJ54_RS16235	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DEJ54_RS16240	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DEJ54_RS16245	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DEJ54_RS16250	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DEJ54_RS16255	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DEJ54_RS16270	COG0018	arginyl-trna synthetase
DEJ54_RS16275	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DEJ54_RS16280	COG0316	Belongs to the HesB IscA family
DEJ54_RS16310	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DEJ54_RS16315	COG0129	dihydroxy-acid dehydratase activity
DEJ54_RS16330	COG0525	valine-tRNA ligase activity
DEJ54_RS16345	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DEJ54_RS16350	COG1741	Belongs to the pirin family
DEJ54_RS16355	COG1574	metal-dependent hydrolase with the TIM-barrel fold
DEJ54_RS16385	COG0415	Belongs to the DNA photolyase family
DEJ54_RS16395	COG0737	Belongs to the 5'-nucleotidase family
DEJ54_RS16400	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DEJ54_RS16410	COG0686	Belongs to the AlaDH PNT family
DEJ54_RS16425	COG2897	thiosulfate sulfurtransferase activity
DEJ54_RS16430	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DEJ54_RS16435	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DEJ54_RS16440	COG0300	oxidoreductase activity
DEJ54_RS16450	COG0513	Belongs to the DEAD box helicase family
DEJ54_RS16460	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DEJ54_RS16465	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DEJ54_RS16475	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DEJ54_RS16480	COG1309	transcriptional regulator
DEJ54_RS16495	COG0514	ATP-dependent DNA helicase (RecQ)
DEJ54_RS16500	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS16515	COG1058	Belongs to the CinA family
DEJ54_RS16515	COG1546	Belongs to the CinA family
DEJ54_RS16525	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
DEJ54_RS16530	COG0778	Nitroreductase
DEJ54_RS16540	COG0306	phosphate transporter
DEJ54_RS16545	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DEJ54_RS16560	COG0596	Alpha beta hydrolase
DEJ54_RS16565	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DEJ54_RS16590	COG0668	transmembrane transport
DEJ54_RS16595	COG2197	response regulator
DEJ54_RS16615	COG0583	DNA-binding transcription factor activity
DEJ54_RS16625	COG0500	methyltransferase
DEJ54_RS16645	COG1376	ErfK ybiS ycfS ynhG family protein
DEJ54_RS16650	COG4232	protein-disulfide reductase activity
DEJ54_RS16655	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DEJ54_RS16670	COG3706	GGDEF domain
DEJ54_RS16685	COG0667	Aldo Keto reductase
DEJ54_RS16730	COG5012	cobalamin binding
DEJ54_RS16770	COG1410	methionine synthase
DEJ54_RS16770	COG0646	methionine synthase
DEJ54_RS16785	COG0583	DNA-binding transcription factor activity
DEJ54_RS16825	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEJ54_RS16840	COG0546	phosphoglycolate phosphatase activity
DEJ54_RS16840	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DEJ54_RS16850	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
DEJ54_RS16850	COG3264	Mechanosensitive ion channel
DEJ54_RS16855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS16865	COG0446	pyridine nucleotide-disulphide oxidoreductase
DEJ54_RS16865	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DEJ54_RS16895	COG0729	surface antigen
DEJ54_RS16905	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DEJ54_RS16915	COG0384	phenazine biosynthesis protein PhzF
DEJ54_RS16920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DEJ54_RS16925	COG1136	(ABC) transporter
DEJ54_RS16930	COG1136	(ABC) transporter
DEJ54_RS16930	COG0577	efflux transmembrane transporter activity
DEJ54_RS16975	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DEJ54_RS16990	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DEJ54_RS17000	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DEJ54_RS17015	COG0440	acetolactate synthase activity
DEJ54_RS17020	COG0028	Belongs to the TPP enzyme family
DEJ54_RS17035	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DEJ54_RS17040	COG3830	Belongs to the UPF0237 family
DEJ54_RS17040	COG0560	Phosphoserine phosphatase
DEJ54_RS17060	COG0330	HflC and HflK could
DEJ54_RS17075	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DEJ54_RS17110	COG0277	FAD linked oxidase domain protein
DEJ54_RS17130	COG0412	Dienelactone hydrolase
DEJ54_RS17135	COG0789	Transcriptional regulator
DEJ54_RS17140	COG0210	DNA helicase
DEJ54_RS17155	COG1999	signal sequence binding
DEJ54_RS17160	COG2264	protein methyltransferase activity
DEJ54_RS17165	COG3706	GGDEF domain
DEJ54_RS17185	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DEJ54_RS17190	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DEJ54_RS17195	COG0497	DNA recombination
DEJ54_RS17200	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DEJ54_RS17210	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DEJ54_RS17215	COG0849	cell division
DEJ54_RS17220	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DEJ54_RS17225	COG1181	Belongs to the D-alanine--D-alanine ligase family
DEJ54_RS17230	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DEJ54_RS17235	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DEJ54_RS17240	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DEJ54_RS17250	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DEJ54_RS17255	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DEJ54_RS17265	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DEJ54_RS17280	COG0275	rRNA processing
DEJ54_RS17285	COG2001	Belongs to the MraZ family
DEJ54_RS17290	COG0626	cystathionine gamma-synthase activity
DEJ54_RS17305	COG3023	N-Acetylmuramoyl-L-alanine amidase
DEJ54_RS17310	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DEJ54_RS17350	COG4106	trans-aconitate 2-methyltransferase activity
DEJ54_RS17365	COG3409	Peptidoglycan-binding domain 1 protein
DEJ54_RS17375	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DEJ54_RS17415	COG2267	carboxylic ester hydrolase activity
DEJ54_RS17425	COG0028	Belongs to the TPP enzyme family
DEJ54_RS17430	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DEJ54_RS17435	COG2151	metal-sulfur cluster biosynthetic enzyme
DEJ54_RS17440	COG3396	Phenylacetate-CoA oxygenase
DEJ54_RS17445	COG3460	Phenylacetate-CoA oxygenase
DEJ54_RS17450	COG3396	Phenylacetate-CoA oxygenase
DEJ54_RS17475	COG1309	transcriptional regulator
DEJ54_RS17480	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEJ54_RS17505	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS17510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS17515	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEJ54_RS17530	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DEJ54_RS17535	COG3485	protocatechuate 3,4-dioxygenase
DEJ54_RS17540	COG3485	protocatechuate 3,4-dioxygenase
DEJ54_RS17545	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DEJ54_RS17550	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS17550	COG2030	dehydratase
DEJ54_RS17555	COG2124	cytochrome p450
DEJ54_RS17560	COG2050	protein possibly involved in aromatic compounds catabolism
DEJ54_RS17570	COG1309	transcriptional regulator
DEJ54_RS17575	COG3327	negative regulation of DNA-templated transcription, initiation
DEJ54_RS17585	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DEJ54_RS17600	COG0493	'glutamate synthase
DEJ54_RS17615	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS17620	COG0601	transmembrane transport
DEJ54_RS17625	COG4166	transmembrane transport
DEJ54_RS17630	COG4206	TonB-dependent receptor
DEJ54_RS17645	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DEJ54_RS17660	COG1595	DNA-templated transcription, initiation
DEJ54_RS17685	COG2968	Membrane
DEJ54_RS17700	COG2983	Belongs to the UPF0260 family
DEJ54_RS17715	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DEJ54_RS17720	COG3795	YCII-related domain
DEJ54_RS17725	COG4941	Belongs to the sigma-70 factor family
DEJ54_RS17735	COG1047	Peptidyl-prolyl cis-trans
DEJ54_RS17770	COG0432	Pfam Uncharacterised protein family UPF0047
DEJ54_RS17785	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DEJ54_RS17790	COG0358	DNA primase activity
DEJ54_RS17795	COG3300	MHYT domain
DEJ54_RS17795	COG5001	Diguanylate cyclase
DEJ54_RS17810	COG0505	Belongs to the CarA family
DEJ54_RS17825	COG2321	neutral zinc metallopeptidase
DEJ54_RS17840	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DEJ54_RS17850	COG1335	isochorismatase
DEJ54_RS17875	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DEJ54_RS17900	COG0436	Aminotransferase
DEJ54_RS17910	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DEJ54_RS17915	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DEJ54_RS17920	COG0583	DNA-binding transcription factor activity
DEJ54_RS17925	COG0492	ferredoxin-NADP+ reductase activity
DEJ54_RS17930	COG1522	sequence-specific DNA binding
DEJ54_RS17940	COG3306	glycosyltransferase involved in LPS biosynthesis
DEJ54_RS17955	COG0438	transferase activity, transferring glycosyl groups
DEJ54_RS17960	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEJ54_RS17965	COG2133	pyrroloquinoline quinone binding
DEJ54_RS17990	COG1253	flavin adenine dinucleotide binding
DEJ54_RS17995	COG1607	acyl-coa hydrolase
DEJ54_RS18060	COG0556	nucleotide-excision repair
DEJ54_RS18085	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DEJ54_RS18095	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
DEJ54_RS18110	COG1396	sequence-specific DNA binding
DEJ54_RS18115	COG1802	Transcriptional regulator
DEJ54_RS18120	COG1268	BioY protein
DEJ54_RS18135	COG1278	Cold shock
DEJ54_RS18140	COG1278	Cold shock
DEJ54_RS18160	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEJ54_RS18170	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DEJ54_RS18175	COG1846	Transcriptional regulator
DEJ54_RS18180	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS18190	COG2205	protein histidine kinase activity
DEJ54_RS18205	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEJ54_RS18230	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DEJ54_RS18240	COG1496	oxidoreductase activity
DEJ54_RS18265	COG1733	regulation of RNA biosynthetic process
DEJ54_RS18270	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DEJ54_RS18275	COG0193	aminoacyl-tRNA hydrolase activity
DEJ54_RS18280	COG0012	GTP binding
DEJ54_RS18305	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DEJ54_RS18310	COG2857	Cytochrome c1
DEJ54_RS18310	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DEJ54_RS18335	COG1280	lysine exporter protein (LysE YggA)
DEJ54_RS18340	COG0408	coproporphyrinogen oxidase activity
DEJ54_RS18350	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DEJ54_RS18360	COG1132	(ABC) transporter
DEJ54_RS18365	COG1132	(ABC) transporter
DEJ54_RS18370	COG0583	DNA-binding transcription factor activity
DEJ54_RS18380	COG0617	tRNA 3'-terminal CCA addition
DEJ54_RS18395	COG0714	Associated with various cellular activities
DEJ54_RS18420	COG0435	Glutathione S-transferase
DEJ54_RS18425	COG0494	nUDIX hydrolase
DEJ54_RS18430	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DEJ54_RS18450	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEJ54_RS18455	COG1733	regulation of RNA biosynthetic process
DEJ54_RS18470	COG3180	Ammonia monooxygenase
DEJ54_RS18475	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DEJ54_RS18480	COG0512	Glutamine amidotransferase of anthranilate synthase
DEJ54_RS18480	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DEJ54_RS18485	COG0671	phosphoesterase, PA-phosphatase related
DEJ54_RS18490	COG1994	Peptidase M50
DEJ54_RS18495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEJ54_RS18500	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEJ54_RS18515	COG0789	Transcriptional regulator
DEJ54_RS18525	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DEJ54_RS18540	COG2852	Protein conserved in bacteria
DEJ54_RS18560	COG0583	DNA-binding transcription factor activity
DEJ54_RS18565	COG2855	membrane
DEJ54_RS18570	COG1435	thymidine kinase activity
DEJ54_RS18580	COG4176	ABC-type proline glycine betaine transport system permease component
DEJ54_RS18600	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEJ54_RS18640	COG0482	sulfurtransferase activity
DEJ54_RS18645	COG0673	inositol 2-dehydrogenase activity
DEJ54_RS18945	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DEJ54_RS18975	COG0328	RNA-DNA hybrid ribonuclease activity
DEJ54_RS19010	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ54_RS19130	COG4653	Phage capsid family
DEJ54_RS19150	COG5518	Phage portal protein
DEJ54_RS19190	COG1653	transport
DEJ54_RS19195	COG1175	transmembrane transport
DEJ54_RS19200	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS19205	COG3842	ATPase activity
DEJ54_RS19210	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DEJ54_RS19220	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS19225	COG1473	amidohydrolase
DEJ54_RS19235	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS19240	COG0601	transmembrane transport
DEJ54_RS19245	COG0747	negative chemotaxis
DEJ54_RS19260	COG1192	Involved in chromosome partitioning
DEJ54_RS19265	COG1475	DNA binding
DEJ54_RS19270	COG1414	Transcriptional regulator
DEJ54_RS19285	COG3831	ATPase activity
DEJ54_RS19315	COG0583	DNA-binding transcription factor activity
DEJ54_RS19325	COG0601	transmembrane transport
DEJ54_RS19330	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS19340	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS19350	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEJ54_RS19375	COG1177	transmembrane transport
DEJ54_RS19380	COG3842	ATPase activity
DEJ54_RS19390	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DEJ54_RS19405	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DEJ54_RS19415	COG2205	protein histidine kinase activity
DEJ54_RS19440	COG2963	transposase activity
DEJ54_RS19450	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS19485	COG1414	Transcriptional regulator
DEJ54_RS19490	COG0583	DNA-binding transcription factor activity
DEJ54_RS19495	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DEJ54_RS19500	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DEJ54_RS19555	COG4948	Mandelate Racemase Muconate Lactonizing
DEJ54_RS19560	COG1312	Catalyzes the dehydration of D-mannonate
DEJ54_RS19565	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DEJ54_RS19570	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS19580	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS19585	COG2186	Transcriptional regulator
DEJ54_RS19605	COG1129	ABC transporter
DEJ54_RS19610	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS19615	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEJ54_RS19620	COG0022	dehydrogenase e1 component
DEJ54_RS19625	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ54_RS19630	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DEJ54_RS19635	COG1070	Carbohydrate kinase
DEJ54_RS19640	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS19675	COG2910	NAD(P)H-binding
DEJ54_RS19685	COG0431	NADPH-dependent FMN reductase
DEJ54_RS19690	COG2207	Transcriptional regulator
DEJ54_RS19725	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DEJ54_RS19780	COG2814	Major facilitator Superfamily
DEJ54_RS19790	COG2249	NAD(P)H dehydrogenase (quinone) activity
DEJ54_RS19800	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ54_RS19810	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DEJ54_RS19815	COG1595	DNA-templated transcription, initiation
DEJ54_RS19830	COG4977	sequence-specific DNA binding
DEJ54_RS19845	COG2186	Transcriptional regulator
DEJ54_RS19850	COG3250	beta-galactosidase activity
DEJ54_RS19860	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS19875	COG0246	Mannitol dehydrogenase
DEJ54_RS19880	COG1904	glucuronate isomerase
DEJ54_RS19885	COG1312	Catalyzes the dehydration of D-mannonate
DEJ54_RS19890	COG0402	S-adenosylhomocysteine deaminase activity
DEJ54_RS19895	COG0747	negative chemotaxis
DEJ54_RS19905	COG0601	transmembrane transport
DEJ54_RS19910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS19920	COG1228	amidohydrolase
DEJ54_RS19925	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS19930	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS19935	COG1802	Transcriptional regulator
DEJ54_RS19965	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DEJ54_RS19970	COG2011	ABC-type metal ion transport system permease component
DEJ54_RS19975	COG1464	Belongs to the NlpA lipoprotein family
DEJ54_RS19990	COG1228	amidohydrolase
DEJ54_RS20000	COG0601	transmembrane transport
DEJ54_RS20005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS20010	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS20015	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS20020	COG1473	amidohydrolase
DEJ54_RS20025	COG0601	transmembrane transport
DEJ54_RS20030	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS20035	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS20080	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS20085	COG1175	transmembrane transport
DEJ54_RS20090	COG3842	ATPase activity
DEJ54_RS20095	COG3842	ATPase activity
DEJ54_RS20130	COG1609	Transcriptional regulator
DEJ54_RS20155	COG2376	Dihydroxyacetone kinase
DEJ54_RS20165	COG0069	glutamate synthase activity
DEJ54_RS20175	COG0406	alpha-ribazole phosphatase activity
DEJ54_RS20185	COG0747	negative chemotaxis
DEJ54_RS20195	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS20200	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS20210	COG2084	Dehydrogenase
DEJ54_RS20215	COG0129	dihydroxy-acid dehydratase activity
DEJ54_RS20245	COG0601	transmembrane transport
DEJ54_RS20250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS20270	COG2205	protein histidine kinase activity
DEJ54_RS20275	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS20295	COG0633	Ferredoxin
DEJ54_RS20305	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEJ54_RS20320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS20340	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEJ54_RS20345	COG2084	Dehydrogenase
DEJ54_RS20350	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS20355	COG2267	carboxylic ester hydrolase activity
DEJ54_RS20365	COG2188	Transcriptional regulator
DEJ54_RS20375	COG2358	TRAP transporter, solute receptor (TAXI family
DEJ54_RS20390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS20405	COG1414	Transcriptional regulator
DEJ54_RS20415	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DEJ54_RS20430	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEJ54_RS20435	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS20450	COG0596	Alpha beta hydrolase
DEJ54_RS20470	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
DEJ54_RS20475	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS20495	COG1414	Transcriptional regulator
DEJ54_RS20500	COG3608	succinylglutamate desuccinylase aspartoacylase
DEJ54_RS20505	COG1126	abc transporter atp-binding protein
DEJ54_RS20510	COG0765	amino acid transport
DEJ54_RS20515	COG0765	amino acid transport
DEJ54_RS20520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEJ54_RS20525	COG0626	cystathionine gamma-synthase activity
DEJ54_RS20535	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS20540	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS20545	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS20550	COG1063	alcohol dehydrogenase
DEJ54_RS20555	COG1609	Transcriptional regulator
DEJ54_RS20560	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS20565	COG0191	fructose-bisphosphate aldolase activity
DEJ54_RS20570	COG1737	Transcriptional regulator
DEJ54_RS20575	COG3842	ATPase activity
DEJ54_RS20585	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS20590	COG1175	transmembrane transport
DEJ54_RS20620	COG3453	Protein conserved in bacteria
DEJ54_RS20620	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEJ54_RS20625	COG0640	Transcriptional regulator
DEJ54_RS20640	COG3842	ATPase activity
DEJ54_RS20645	COG1175	transmembrane transport
DEJ54_RS20660	COG0431	NADPH-dependent FMN reductase
DEJ54_RS20665	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DEJ54_RS20695	COG4209	transmembrane transport
DEJ54_RS20700	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS20720	COG3842	ATPase activity
DEJ54_RS20740	COG3842	ATPase activity
DEJ54_RS20750	COG2267	carboxylic ester hydrolase activity
DEJ54_RS20755	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DEJ54_RS20770	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS20775	COG0747	negative chemotaxis
DEJ54_RS20780	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS20785	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DEJ54_RS20790	COG1396	sequence-specific DNA binding
DEJ54_RS20790	COG1917	Cupin 2, conserved barrel domain protein
DEJ54_RS20795	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS20810	COG3639	organic phosphonate transmembrane transporter activity
DEJ54_RS20815	COG3639	organic phosphonate transmembrane transporter activity
DEJ54_RS20820	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
DEJ54_RS20825	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DEJ54_RS20830	COG3454	Phosphonate metabolism
DEJ54_RS20835	COG4778	phosphonate C-P lyase system protein PhnL
DEJ54_RS20845	COG3627	carbon phosphorus lyase activity
DEJ54_RS20865	COG1609	Transcriptional regulator
DEJ54_RS20885	COG0559	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS20895	COG1335	isochorismatase
DEJ54_RS20900	COG0174	glutamine synthetase
DEJ54_RS20910	COG0683	leucine binding
DEJ54_RS20925	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS20930	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS20935	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS20940	COG0601	transmembrane transport
DEJ54_RS20945	COG0747	negative chemotaxis
DEJ54_RS20960	COG3842	ATPase activity
DEJ54_RS20965	COG1176	ABC-type spermidine putrescine transport system, permease component I
DEJ54_RS20970	COG1177	transmembrane transport
DEJ54_RS21005	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEJ54_RS21025	COG1653	transport
DEJ54_RS21030	COG1846	Transcriptional regulator
DEJ54_RS21030	COG1940	carbohydrate kinase activity
DEJ54_RS21075	COG0745	RESPONSE REGULATOR receiver
DEJ54_RS21090	COG3842	ATPase activity
DEJ54_RS21100	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS21105	COG1175	transmembrane transport
DEJ54_RS21120	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DEJ54_RS21125	COG4821	SIS domain
DEJ54_RS21130	COG0363	glucosamine-6-phosphate deaminase activity
DEJ54_RS21135	COG1609	Transcriptional regulator
DEJ54_RS21140	COG2188	Transcriptional regulator
DEJ54_RS21160	COG1175	transmembrane transport
DEJ54_RS21165	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS21180	COG0673	inositol 2-dehydrogenase activity
DEJ54_RS21215	COG4608	Belongs to the ABC transporter superfamily
DEJ54_RS21220	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS21225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS21230	COG0601	transmembrane transport
DEJ54_RS21235	COG0747	negative chemotaxis
DEJ54_RS21240	COG3048	D-serine ammonia-lyase activity
DEJ54_RS21250	COG0583	DNA-binding transcription factor activity
DEJ54_RS21260	COG0601	transmembrane transport
DEJ54_RS21265	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS21275	COG4948	Mandelate Racemase Muconate Lactonizing
DEJ54_RS21280	COG0156	8-amino-7-oxononanoate synthase activity
DEJ54_RS21305	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS21340	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
DEJ54_RS21355	COG1116	anion transmembrane transporter activity
DEJ54_RS21365	COG0583	DNA-binding transcription factor activity
DEJ54_RS21370	COG1234	tRNA 3'-trailer cleavage
DEJ54_RS21400	COG1418	mRNA catabolic process
DEJ54_RS21410	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DEJ54_RS21450	COG0559	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS21470	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DEJ54_RS21475	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS21490	COG3842	ATPase activity
DEJ54_RS21495	COG1349	DNA-binding transcription factor activity
DEJ54_RS21535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS21540	COG0444	Belongs to the ABC transporter superfamily
DEJ54_RS21565	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS21580	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS21585	COG0601	transmembrane transport
DEJ54_RS21590	COG0747	negative chemotaxis
DEJ54_RS21600	COG2390	Transcriptional regulator
DEJ54_RS21615	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS21620	COG0584	glycerophosphoryl diester phosphodiesterase
DEJ54_RS21625	COG3540	Alkaline phosphatase
DEJ54_RS21630	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEJ54_RS21635	COG1349	DNA-binding transcription factor activity
DEJ54_RS21645	COG1129	ABC transporter
DEJ54_RS21650	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS21655	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS21670	COG2832	Protein of unknown function (DUF454)
DEJ54_RS21690	COG0747	negative chemotaxis
DEJ54_RS21700	COG1215	transferase activity, transferring glycosyl groups
DEJ54_RS21715	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DEJ54_RS21720	COG2197	response regulator
DEJ54_RS21730	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DEJ54_RS21735	COG0633	Ferredoxin
DEJ54_RS21755	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS21765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEJ54_RS21775	COG0402	S-adenosylhomocysteine deaminase activity
DEJ54_RS21790	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
DEJ54_RS21830	COG1304	FMN binding
DEJ54_RS21835	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DEJ54_RS21840	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DEJ54_RS21865	COG2186	Transcriptional regulator
DEJ54_RS21875	COG0516	GMP reductase activity
DEJ54_RS21875	COG0517	IMP dehydrogenase activity
DEJ54_RS21885	COG1477	protein flavinylation
DEJ54_RS21895	COG2871	sodium ion transport
DEJ54_RS21900	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DEJ54_RS21930	COG1473	amidohydrolase
DEJ54_RS21945	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS21960	COG1940	carbohydrate kinase activity
DEJ54_RS21965	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS21980	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEJ54_RS21985	COG3457	Alanine racemase
DEJ54_RS21995	COG0733	neurotransmitter:sodium symporter activity
DEJ54_RS22015	COG3192	ethanolamine utilization protein
DEJ54_RS22040	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEJ54_RS22060	COG0306	phosphate transporter
DEJ54_RS22095	COG1404	Belongs to the peptidase S8 family
DEJ54_RS22105	COG2084	Dehydrogenase
DEJ54_RS22110	COG0179	Fumarylacetoacetate (FAA) hydrolase
DEJ54_RS22115	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS22125	COG0129	dihydroxy-acid dehydratase activity
DEJ54_RS22130	COG3395	kinase activity
DEJ54_RS22135	COG0235	Class ii aldolase
DEJ54_RS22140	COG3622	Belongs to the hyi family
DEJ54_RS22145	COG1802	Transcriptional regulator
DEJ54_RS22150	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DEJ54_RS22155	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DEJ54_RS22160	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS22165	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DEJ54_RS22165	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS22185	COG3474	cytochrome
DEJ54_RS22195	COG1595	DNA-templated transcription, initiation
DEJ54_RS22205	COG1012	belongs to the aldehyde dehydrogenase family
DEJ54_RS22210	COG0747	negative chemotaxis
DEJ54_RS22220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS22225	COG4172	Belongs to the ABC transporter superfamily
DEJ54_RS22240	COG3842	ATPase activity
DEJ54_RS22245	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS22250	COG1175	transmembrane transport
DEJ54_RS22260	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DEJ54_RS22280	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS22285	COG0543	2 iron, 2 sulfur cluster binding
DEJ54_RS22290	COG0167	dihydroorotate dehydrogenase activity
DEJ54_RS22300	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DEJ54_RS22315	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DEJ54_RS22320	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
DEJ54_RS22355	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DEJ54_RS22375	COG1999	signal sequence binding
DEJ54_RS22390	COG2390	Transcriptional regulator
DEJ54_RS22400	COG4176	ABC-type proline glycine betaine transport system permease component
DEJ54_RS22405	COG3842	ATPase activity
DEJ54_RS22440	COG3639	organic phosphonate transmembrane transporter activity
DEJ54_RS22460	COG1349	DNA-binding transcription factor activity
DEJ54_RS22475	COG1280	lysine exporter protein (LysE YggA)
DEJ54_RS22480	COG0159	tryptophan synthase activity
DEJ54_RS22485	COG0133	tryptophan synthase activity
DEJ54_RS22495	COG1070	Carbohydrate kinase
DEJ54_RS22500	COG1879	ABC-type sugar transport system periplasmic component
DEJ54_RS22505	COG1129	ABC transporter
DEJ54_RS22515	COG2188	Transcriptional regulator
DEJ54_RS22530	COG2909	trisaccharide binding
DEJ54_RS22545	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DEJ54_RS22580	COG0640	Transcriptional regulator
DEJ54_RS22600	COG1177	transmembrane transport
DEJ54_RS22605	COG1176	ABC-type spermidine putrescine transport system, permease component I
DEJ54_RS22610	COG3842	ATPase activity
DEJ54_RS22620	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ54_RS22625	COG0523	cobalamin synthesis protein
DEJ54_RS22635	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DEJ54_RS22640	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DEJ54_RS22645	COG1797	cobyrinic acid a,c-diamide synthase activity
DEJ54_RS22650	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DEJ54_RS22650	COG1648	precorrin-2 dehydrogenase activity
DEJ54_RS22735	COG1757	Na H antiporter
DEJ54_RS22740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DEJ54_RS22750	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEJ54_RS22755	COG1802	Transcriptional regulator
DEJ54_RS22790	COG2022	thiamine diphosphate biosynthetic process
DEJ54_RS22805	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DEJ54_RS22830	COG0583	DNA-binding transcription factor activity
DEJ54_RS22850	COG0446	pyridine nucleotide-disulphide oxidoreductase
DEJ54_RS22880	COG1309	transcriptional regulator
DEJ54_RS22905	COG1120	ATPase activity
DEJ54_RS22910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEJ54_RS22925	COG4264	IucA IucC family
DEJ54_RS22930	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DEJ54_RS22935	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DEJ54_RS22940	COG0019	diaminopimelate decarboxylase activity
DEJ54_RS22945	COG1475	DNA binding
DEJ54_RS22960	COG1959	2 iron, 2 sulfur cluster binding
DEJ54_RS22965	COG3794	PFAM blue (type 1) copper domain protein
DEJ54_RS22980	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS23010	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DEJ54_RS23020	COG3842	ATPase activity
DEJ54_RS23025	COG0395	ABC-type sugar transport system, permease component
DEJ54_RS23030	COG1175	transmembrane transport
DEJ54_RS23055	COG4589	Belongs to the CDS family
DEJ54_RS23075	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DEJ54_RS23080	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ54_RS23090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEJ54_RS23095	COG0601	transmembrane transport
DEJ54_RS23100	COG0747	negative chemotaxis
DEJ54_RS23105	COG0235	Class ii aldolase