locus-tag class description NIDE_RS00005 PF11638 DnaA N-terminal domain NIDE_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NIDE_RS00005 PF00308 Bacterial dnaA protein NIDE_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NIDE_RS00010 PF02767 DNA polymerase III beta subunit, central domain NIDE_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NIDE_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS00015 PF00204 DNA gyrase B NIDE_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus NIDE_RS00015 PF18053 DNA gyrase B subunit insert domain NIDE_RS00015 PF01751 Toprim domain NIDE_RS00020 PF03989 DNA gyrase C-terminal domain, beta-propeller NIDE_RS00020 PF00521 DNA gyrase/topoisomerase IV, subunit A NIDE_RS00035 PF01668 SmpB protein NIDE_RS00050 PF05726 Pirin C-terminal cupin domain NIDE_RS00050 PF02678 Pirin NIDE_RS00055 PF01323 DSBA-like thioredoxin domain NIDE_RS00070 PF00355 Rieske [2Fe-2S] domain NIDE_RS00090 PF00111 2Fe-2S iron-sulfur cluster binding domain NIDE_RS00090 PF00175 Oxidoreductase NAD-binding domain NIDE_RS00090 PF00970 Oxidoreductase FAD-binding domain NIDE_RS00110 PF02913 FAD linked oxidases, C-terminal domain NIDE_RS00110 PF01565 FAD binding domain NIDE_RS00115 PF00107 Zinc-binding dehydrogenase NIDE_RS00115 PF08240 Alcohol dehydrogenase GroES-like domain NIDE_RS00125 PF13460 NAD(P)H-binding NIDE_RS00130 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS00140 PF00158 Sigma-54 interaction domain NIDE_RS00140 PF02954 Bacterial regulatory protein, Fis family NIDE_RS00140 PF01590 GAF domain NIDE_RS00150 PF13533 Biotin-lipoyl like NIDE_RS00155 PF00005 ABC transporter NIDE_RS00160 PF00005 ABC transporter NIDE_RS00200 PF13419 Haloacid dehalogenase-like hydrolase NIDE_RS00205 PF03632 Glycosyl hydrolase family 65 central catalytic domain NIDE_RS00205 PF03633 Glycosyl hydrolase family 65, C-terminal domain NIDE_RS00205 PF03636 Glycosyl hydrolase family 65, N-terminal domain NIDE_RS00210 PF02566 OsmC-like protein NIDE_RS00215 PF13419 Haloacid dehalogenase-like hydrolase NIDE_RS00220 PF14602 Hexapeptide repeat of succinyl-transferase NIDE_RS00220 PF12464 Maltose acetyltransferase NIDE_RS00225 PF00881 Nitroreductase family NIDE_RS00240 PF01042 Endoribonuclease L-PSP NIDE_RS00245 PF00730 HhH-GPD superfamily base excision DNA repair protein NIDE_RS00260 PF00576 HIUase/Transthyretin family NIDE_RS00265 PF03466 LysR substrate binding domain NIDE_RS00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIDE_RS00275 PF03150 Di-haem cytochrome c peroxidase NIDE_RS00285 PF00581 Rhodanese-like domain NIDE_RS00305 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIDE_RS00310 PF00376 MerR family regulatory protein NIDE_RS00310 PF09278 MerR, DNA binding NIDE_RS00315 PF02411 MerT mercuric transport protein NIDE_RS00320 PF00403 Heavy-metal-associated domain NIDE_RS00340 PF00239 Resolvase, N terminal domain NIDE_RS00340 PF02796 Helix-turn-helix domain of resolvase NIDE_RS00435 PF01555 DNA methylase NIDE_RS00440 PF02195 ParB-like nuclease domain NIDE_RS00610 PF00271 Helicase conserved C-terminal domain NIDE_RS00610 PF00176 SNF2 family N-terminal domain NIDE_RS00640 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NIDE_RS00645 PF00271 Helicase conserved C-terminal domain NIDE_RS00645 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NIDE_RS00645 PF08463 EcoEI R protein C-terminal NIDE_RS00645 PF04851 Type III restriction enzyme, res subunit NIDE_RS00660 PF02384 N-6 DNA Methylase NIDE_RS00660 PF12161 HsdM N-terminal domain NIDE_RS00670 PF00127 Copper binding proteins, plastocyanin/azurin family NIDE_RS00675 PF00723 Glycosyl hydrolases family 15 NIDE_RS00680 PF00982 Glycosyltransferase family 20 NIDE_RS00700 PF03976 Polyphosphate kinase 2 (PPK2) NIDE_RS00720 PF03009 Glycerophosphoryl diester phosphodiesterase family NIDE_RS00725 PF01368 DHH family NIDE_RS00725 PF02272 DHHA1 domain NIDE_RS00725 PF00571 CBS domain NIDE_RS00725 PF01743 Poly A polymerase head domain NIDE_RS00730 PF01329 Pterin 4 alpha carbinolamine dehydratase NIDE_RS00735 PF00919 Uncharacterized protein family UPF0004 NIDE_RS00735 PF04055 Radical SAM superfamily NIDE_RS00735 PF01938 TRAM domain NIDE_RS00740 PF02627 Carboxymuconolactone decarboxylase family NIDE_RS00745 PF00459 Inositol monophosphatase family NIDE_RS00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIDE_RS00760 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS00760 PF00072 Response regulator receiver domain NIDE_RS00770 PF03477 ATP cone domain NIDE_RS00775 PF00464 Serine hydroxymethyltransferase NIDE_RS00780 PF01281 Ribosomal protein L9, N-terminal domain NIDE_RS00780 PF03948 Ribosomal protein L9, C-terminal domain NIDE_RS00835 PF00239 Resolvase, N terminal domain NIDE_RS00835 PF02796 Helix-turn-helix domain of resolvase NIDE_RS00845 PF00067 Cytochrome P450 NIDE_RS00870 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS00875 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS00885 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS00895 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS00895 PF08338 Domain of unknown function (DUF1731) NIDE_RS00905 PF02163 Peptidase family M50 NIDE_RS00905 PF17820 PDZ domain NIDE_RS00905 PF13180 PDZ domain NIDE_RS00920 PF00875 DNA photolyase NIDE_RS00920 PF03441 FAD binding domain of DNA photolyase NIDE_RS00925 PF08349 Protein of unknown function (DUF1722) NIDE_RS00950 PF00106 short chain dehydrogenase NIDE_RS00985 PF08479 POTRA domain, ShlB-type NIDE_RS00985 PF17287 POTRA domain NIDE_RS00985 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIDE_RS00990 PF00156 Phosphoribosyl transferase domain NIDE_RS01010 PF08448 PAS fold NIDE_RS01010 PF13188 PAS domain NIDE_RS01010 PF00072 Response regulator receiver domain NIDE_RS01010 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS01015 PF00072 Response regulator receiver domain NIDE_RS01025 PF00361 Proton-conducting membrane transporter NIDE_RS01030 PF00361 Proton-conducting membrane transporter NIDE_RS01035 PF00361 Proton-conducting membrane transporter NIDE_RS01035 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NIDE_RS01040 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIDE_RS01040 PF00361 Proton-conducting membrane transporter NIDE_RS01045 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIDE_RS01050 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIDE_RS01060 PF13237 4Fe-4S dicluster domain NIDE_RS01060 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIDE_RS01060 PF01568 Molydopterin dinucleotide binding domain NIDE_RS01060 PF00384 Molybdopterin oxidoreductase NIDE_RS01060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIDE_RS01065 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIDE_RS01065 PF00374 Nickel-dependent hydrogenase NIDE_RS01070 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIDE_RS01075 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIDE_RS01080 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIDE_RS01090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIDE_RS01090 PF18074 Primosomal protein N C-terminal domain NIDE_RS01090 PF17764 3′ DNA-binding domain (3′BD) NIDE_RS01090 PF00271 Helicase conserved C-terminal domain NIDE_RS01090 PF00270 DEAD/DEAH box helicase NIDE_RS01100 PF02954 Bacterial regulatory protein, Fis family NIDE_RS01100 PF00072 Response regulator receiver domain NIDE_RS01100 PF00158 Sigma-54 interaction domain NIDE_RS01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS01105 PF00072 Response regulator receiver domain NIDE_RS01105 PF13188 PAS domain NIDE_RS01105 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS01105 PF08448 PAS fold NIDE_RS01120 PF04055 Radical SAM superfamily NIDE_RS01125 PF00883 Cytosol aminopeptidase family, catalytic domain NIDE_RS01125 PF02789 Cytosol aminopeptidase family, N-terminal domain NIDE_RS01130 PF01915 Glycosyl hydrolase family 3 C-terminal domain NIDE_RS01130 PF00933 Glycosyl hydrolase family 3 N terminal domain NIDE_RS01150 PF13520 Amino acid permease NIDE_RS01155 PF06418 CTP synthase N-terminus NIDE_RS01155 PF00117 Glutamine amidotransferase class-I NIDE_RS01170 PF01321 Creatinase/Prolidase N-terminal domain NIDE_RS01170 PF00557 Metallopeptidase family M24 NIDE_RS01175 PF02416 mttA/Hcf106 family NIDE_RS01195 PF06689 ClpX C4-type zinc finger NIDE_RS01195 PF10431 C-terminal, D2-small domain, of ClpB protein NIDE_RS01195 PF07724 AAA domain (Cdc48 subfamily) NIDE_RS01200 PF00574 Clp protease NIDE_RS01205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIDE_RS01205 PF05698 Bacterial trigger factor protein (TF) C-terminus NIDE_RS01205 PF05697 Bacterial trigger factor protein (TF) NIDE_RS01220 PF13458 Periplasmic binding protein NIDE_RS01230 PF13488 Glycine zipper NIDE_RS01230 PF00691 OmpA family NIDE_RS01235 PF01741 Large-conductance mechanosensitive channel, MscL NIDE_RS01245 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS01245 PF00072 Response regulator receiver domain NIDE_RS01250 PF02954 Bacterial regulatory protein, Fis family NIDE_RS01250 PF00072 Response regulator receiver domain NIDE_RS01250 PF00158 Sigma-54 interaction domain NIDE_RS01260 PF00691 OmpA family NIDE_RS01260 PF01389 OmpA-like transmembrane domain NIDE_RS01270 PF00924 Mechanosensitive ion channel NIDE_RS01270 PF05552 Conserved TM helix NIDE_RS01285 PF12169 DNA polymerase III subunits gamma and tau domain III NIDE_RS01290 PF02575 YbaB/EbfC DNA-binding family NIDE_RS01295 PF02132 RecR protein NIDE_RS01295 PF13662 Toprim domain NIDE_RS01300 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIDE_RS01355 PF01134 Glucose inhibited division protein A NIDE_RS01360 PF00589 Phage integrase family NIDE_RS01360 PF02899 Phage integrase, N-terminal SAM-like domain NIDE_RS01365 PF00227 Proteasome subunit NIDE_RS01370 PF07724 AAA domain (Cdc48 subfamily) NIDE_RS01370 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS01375 PF00696 Amino acid kinase family NIDE_RS01385 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS01390 PF00919 Uncharacterized protein family UPF0004 NIDE_RS01390 PF04055 Radical SAM superfamily NIDE_RS01390 PF18693 TRAM domain NIDE_RS01395 PF17820 PDZ domain NIDE_RS01395 PF13180 PDZ domain NIDE_RS01400 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS01400 PF00672 HAMP domain NIDE_RS01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS01405 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS01405 PF00072 Response regulator receiver domain NIDE_RS01410 PF01435 Peptidase family M48 NIDE_RS01415 PF05987 Bacterial protein of unknown function (DUF898) NIDE_RS01425 PF00890 FAD binding domain NIDE_RS01425 PF02910 Fumarate reductase flavoprotein C-term NIDE_RS01430 PF02347 Glycine cleavage system P-protein NIDE_RS01440 PF01156 Inosine-uridine preferring nucleoside hydrolase NIDE_RS01445 PF00294 pfkB family carbohydrate kinase NIDE_RS01455 PF03167 Uracil DNA glycosylase superfamily NIDE_RS01465 PF00293 NUDIX domain NIDE_RS01470 PF01571 Aminomethyltransferase folate-binding domain NIDE_RS01470 PF08669 Glycine cleavage T-protein C-terminal barrel domain NIDE_RS01475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIDE_RS01480 PF10442 FIST C domain NIDE_RS01480 PF08495 FIST N domain NIDE_RS01490 PF03576 Peptidase family S58 NIDE_RS01495 PF00753 Metallo-beta-lactamase superfamily NIDE_RS01495 PF10996 Beta-Casp domain NIDE_RS01495 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NIDE_RS01550 PF00589 Phage integrase family NIDE_RS01570 PF13559 Domain of unknown function (DUF4129) NIDE_RS01570 PF11992 Domain of unknown function (DUF3488) NIDE_RS01570 PF01841 Transglutaminase-like superfamily NIDE_RS01580 PF17863 AAA lid domain NIDE_RS01580 PF07726 ATPase family associated with various cellular activities (AAA) NIDE_RS01600 PF13472 GDSL-like Lipase/Acylhydrolase family NIDE_RS01605 PF00005 ABC transporter NIDE_RS01615 PF11838 ERAP1-like C-terminal domain NIDE_RS01615 PF01433 Peptidase family M1 domain NIDE_RS01620 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIDE_RS01625 PF02685 Glucokinase NIDE_RS01630 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NIDE_RS01635 PF00342 Phosphoglucose isomerase NIDE_RS01645 PF00825 Ribonuclease P NIDE_RS01650 PF02096 60Kd inner membrane protein NIDE_RS01650 PF14849 YidC periplasmic domain NIDE_RS01655 PF01926 50S ribosome-binding GTPase NIDE_RS01655 PF12631 MnmE helical domain NIDE_RS01655 PF10396 GTP-binding protein TrmE N-terminus NIDE_RS01660 PF13932 GidA associated domain NIDE_RS01660 PF01134 Glucose inhibited division protein A NIDE_RS01670 PF13614 AAA domain NIDE_RS01675 PF17762 HTH domain found in ParB protein NIDE_RS01675 PF02195 ParB-like nuclease domain NIDE_RS01695 PF00213 ATP synthase delta (OSCP) subunit NIDE_RS01700 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIDE_RS01700 PF00306 ATP synthase alpha/beta chain, C terminal domain NIDE_RS01700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIDE_RS01705 PF00231 ATP synthase NIDE_RS01710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIDE_RS01710 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIDE_RS01715 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIDE_RS01715 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NIDE_RS01730 PF01479 S4 domain NIDE_RS01730 PF00849 RNA pseudouridylate synthase NIDE_RS01740 PF00849 RNA pseudouridylate synthase NIDE_RS01740 PF01479 S4 domain NIDE_RS01760 PF00950 ABC 3 transport family NIDE_RS01765 PF00005 ABC transporter NIDE_RS01775 PF03702 Anhydro-N-acetylmuramic acid kinase NIDE_RS01800 PF01464 Transglycosylase SLT domain NIDE_RS01815 PF00551 Formyl transferase NIDE_RS01815 PF02911 Formyl transferase, C-terminal domain NIDE_RS01820 PF01189 16S rRNA methyltransferase RsmB/F NIDE_RS01820 PF01029 NusB family NIDE_RS01825 PF00834 Ribulose-phosphate 3 epimerase family NIDE_RS01830 PF01409 tRNA synthetases class II core domain (F) NIDE_RS01835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIDE_RS01835 PF03484 tRNA synthetase B5 domain NIDE_RS01840 PF00453 Ribosomal protein L20 NIDE_RS01845 PF01632 Ribosomal protein L35 NIDE_RS01850 PF00707 Translation initiation factor IF-3, C-terminal domain NIDE_RS01850 PF05198 Translation initiation factor IF-3, N-terminal domain NIDE_RS01855 PF02824 TGS domain NIDE_RS01855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIDE_RS01855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIDE_RS01855 PF03129 Anticodon binding domain NIDE_RS01865 PF00216 Bacterial DNA-binding protein NIDE_RS01875 PF02082 Transcriptional regulator NIDE_RS01880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIDE_RS01880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIDE_RS01885 PF01507 Phosphoadenosine phosphosulfate reductase family NIDE_RS01890 PF02885 Glycosyl transferase family, helical bundle domain NIDE_RS01890 PF00591 Glycosyl transferase family, a/b domain NIDE_RS01895 PF01507 Phosphoadenosine phosphosulfate reductase family NIDE_RS01900 PF00009 Elongation factor Tu GTP binding domain NIDE_RS01905 PF10609 NUBPL iron-transfer P-loop NTPase NIDE_RS01905 PF01883 Iron-sulfur cluster assembly protein NIDE_RS01910 PF00148 Nitrogenase component 1 type Oxidoreductase NIDE_RS01910 PF08369 Proto-chlorophyllide reductase 57 kD subunit NIDE_RS01920 PF01709 Transcriptional regulator NIDE_RS01925 PF01330 RuvA N terminal domain NIDE_RS01925 PF07499 RuvA, C-terminal domain NIDE_RS01930 PF17864 RuvB AAA lid domain NIDE_RS01930 PF05491 RuvB C-terminal winged helix domain NIDE_RS01930 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIDE_RS01935 PF00800 Prephenate dehydratase NIDE_RS01935 PF01817 Chorismate mutase type II NIDE_RS01935 PF01842 ACT domain NIDE_RS01940 PF00155 Aminotransferase class I and II NIDE_RS01945 PF18152 DAHP synthase ferredoxin-like domain NIDE_RS01945 PF00793 DAHP synthetase I family NIDE_RS01950 PF02153 Prephenate dehydrogenase NIDE_RS01950 PF01842 ACT domain NIDE_RS01955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIDE_RS01960 PF02224 Cytidylate kinase NIDE_RS01965 PF00501 AMP-binding enzyme NIDE_RS01965 PF01553 Acyltransferase NIDE_RS01970 PF00575 S1 RNA binding domain NIDE_RS01975 PF01343 Peptidase family S49 NIDE_RS01980 PF00216 Bacterial DNA-binding protein NIDE_RS02010 PF07943 Penicillin-binding protein 5, C-terminal domain NIDE_RS02010 PF00768 D-alanyl-D-alanine carboxypeptidase NIDE_RS02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIDE_RS02020 PF03466 LysR substrate binding domain NIDE_RS02025 PF01152 Bacterial-like globin NIDE_RS02040 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIDE_RS02040 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIDE_RS02045 PF03099 Biotin/lipoate A/B protein ligase family NIDE_RS02050 PF13180 PDZ domain NIDE_RS02055 PF00140 Sigma-70 factor, region 1.2 NIDE_RS02055 PF04546 Sigma-70, non-essential region NIDE_RS02055 PF03979 Sigma-70 factor, region 1.1 NIDE_RS02055 PF04542 Sigma-70 region 2 NIDE_RS02055 PF04539 Sigma-70 region 3 NIDE_RS02055 PF04545 Sigma-70, region 4 NIDE_RS02060 PF08704 tRNA methyltransferase complex GCD14 subunit NIDE_RS02070 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIDE_RS02070 PF08501 Shikimate dehydrogenase substrate binding domain NIDE_RS02070 PF01488 Shikimate / quinate 5-dehydrogenase NIDE_RS02075 PF01202 Shikimate kinase NIDE_RS02115 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ NIDE_RS02145 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NIDE_RS02145 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NIDE_RS02150 PF01625 Peptide methionine sulfoxide reductase NIDE_RS02160 PF01171 PP-loop family NIDE_RS02175 PF07478 D-ala D-ala ligase C-terminus NIDE_RS02190 PF00300 Histidine phosphatase superfamily (branch 1) NIDE_RS02215 PF00202 Aminotransferase class-III NIDE_RS02220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIDE_RS02220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIDE_RS02225 PF00764 Arginosuccinate synthase NIDE_RS02230 PF14698 Argininosuccinate lyase C-terminal NIDE_RS02230 PF00206 Lyase NIDE_RS02235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIDE_RS02235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIDE_RS02240 PF00701 Dihydrodipicolinate synthetase family NIDE_RS02245 PF05173 Dihydrodipicolinate reductase, C-terminus NIDE_RS02245 PF01113 Dihydrodipicolinate reductase, N-terminus NIDE_RS02260 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIDE_RS02265 PF03167 Uracil DNA glycosylase superfamily NIDE_RS02275 PF05161 MOFRL family NIDE_RS02275 PF13660 Domain of unknown function (DUF4147) NIDE_RS02280 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIDE_RS02280 PF00391 PEP-utilising enzyme, mobile domain NIDE_RS02285 PF02646 RmuC family NIDE_RS02300 PF02569 Pantoate-beta-alanine ligase NIDE_RS02305 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIDE_RS02310 PF00155 Aminotransferase class I and II NIDE_RS02335 PF14524 Wzt C-terminal domain NIDE_RS02335 PF00005 ABC transporter NIDE_RS02350 PF08241 Methyltransferase domain NIDE_RS02370 PF00300 Histidine phosphatase superfamily (branch 1) NIDE_RS02390 PF13732 Domain of unknown function (DUF4162) NIDE_RS02390 PF00005 ABC transporter NIDE_RS02400 PF13369 Transglutaminase-like superfamily NIDE_RS02405 PF12706 Beta-lactamase superfamily domain NIDE_RS02410 PF01047 MarR family NIDE_RS02430 PF01142 tRNA pseudouridine synthase D (TruD) NIDE_RS02450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIDE_RS02450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIDE_RS02455 PF00731 AIR carboxylase NIDE_RS02465 PF01969 Protein of unknown function DUF111 NIDE_RS02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIDE_RS02485 PF00398 Ribosomal RNA adenine dimethylase NIDE_RS02490 PF01580 FtsK/SpoIIIE family NIDE_RS02490 PF09397 Ftsk gamma domain NIDE_RS02490 PF17854 FtsK alpha domain NIDE_RS02490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIDE_RS02510 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS02510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS02520 PF08447 PAS fold NIDE_RS02520 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS02520 PF00989 PAS fold NIDE_RS02520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS02520 PF13493 Domain of unknown function (DUF4118) NIDE_RS02520 PF13426 PAS domain NIDE_RS02525 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS02525 PF00593 TonB dependent receptor NIDE_RS02530 PF00593 TonB dependent receptor NIDE_RS02530 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS02580 PF00989 PAS fold NIDE_RS02580 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS02580 PF16736 Single Cache-like NIDE_RS02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS02600 PF04055 Radical SAM superfamily NIDE_RS02600 PF13186 Iron-sulfur cluster-binding domain NIDE_RS02615 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS02635 PF17760 UvrA interaction domain NIDE_RS02635 PF17755 UvrA DNA-binding domain NIDE_RS02665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS02665 PF05384 Sensor protein DegS NIDE_RS02665 PF07730 Histidine kinase NIDE_RS02670 PF00072 Response regulator receiver domain NIDE_RS02670 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS02675 PF00072 Response regulator receiver domain NIDE_RS02675 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS02680 PF00072 Response regulator receiver domain NIDE_RS02680 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS02690 PF03350 Uncharacterized protein family, UPF0114 NIDE_RS02705 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS02705 PF00072 Response regulator receiver domain NIDE_RS02710 PF02801 Beta-ketoacyl synthase, C-terminal domain NIDE_RS02710 PF00109 Beta-ketoacyl synthase, N-terminal domain NIDE_RS02750 PF02151 UvrB/uvrC motif NIDE_RS02750 PF08459 UvrC Helix-hairpin-helix N-terminal NIDE_RS02750 PF01541 GIY-YIG catalytic domain NIDE_RS02755 PF01678 Diaminopimelate epimerase NIDE_RS02760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIDE_RS02770 PF01522 Polysaccharide deacetylase NIDE_RS02775 PF00571 CBS domain NIDE_RS02775 PF02163 Peptidase family M50 NIDE_RS02780 PF03631 Virulence factor BrkB NIDE_RS02785 PF00361 Proton-conducting membrane transporter NIDE_RS02790 PF00361 Proton-conducting membrane transporter NIDE_RS02790 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NIDE_RS02795 PF00361 Proton-conducting membrane transporter NIDE_RS02795 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIDE_RS02800 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIDE_RS02805 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIDE_RS02810 PF12838 4Fe-4S dicluster domain NIDE_RS02815 PF00146 NADH dehydrogenase NIDE_RS02820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIDE_RS02820 PF12838 4Fe-4S dicluster domain NIDE_RS02820 PF00384 Molybdopterin oxidoreductase NIDE_RS02820 PF01568 Molydopterin dinucleotide binding domain NIDE_RS02820 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIDE_RS02825 PF10531 SLBB domain NIDE_RS02825 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIDE_RS02825 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIDE_RS02835 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIDE_RS02835 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIDE_RS02840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIDE_RS02845 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIDE_RS02865 PF13936 Helix-turn-helix domain NIDE_RS02865 PF00665 Integrase core domain NIDE_RS02885 PF01043 SecA preprotein cross-linking domain NIDE_RS02885 PF02810 SEC-C motif NIDE_RS02885 PF07517 SecA DEAD-like domain NIDE_RS02885 PF07516 SecA Wing and Scaffold domain NIDE_RS02915 PF00578 AhpC/TSA family NIDE_RS02935 PF00578 AhpC/TSA family NIDE_RS02960 PF00593 TonB dependent receptor NIDE_RS02960 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS02975 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS02975 PF00593 TonB dependent receptor NIDE_RS02985 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS02985 PF00593 TonB dependent receptor NIDE_RS02995 PF01618 MotA/TolQ/ExbB proton channel family NIDE_RS03000 PF02472 Biopolymer transport protein ExbD/TolR NIDE_RS03015 PF00593 TonB dependent receptor NIDE_RS03015 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS03020 PF01850 PIN domain NIDE_RS03040 PF00593 TonB dependent receptor NIDE_RS03040 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS03045 PF13635 Domain of unknown function (DUF4143) NIDE_RS03045 PF13173 AAA domain NIDE_RS03065 PF00005 ABC transporter NIDE_RS03075 PF02687 FtsX-like permease family NIDE_RS03075 PF12704 MacB-like periplasmic core domain NIDE_RS03130 PF04945 YHS domain NIDE_RS03135 PF17820 PDZ domain NIDE_RS03135 PF13180 PDZ domain NIDE_RS03165 PF00072 Response regulator receiver domain NIDE_RS03170 PF01402 Ribbon-helix-helix protein, copG family NIDE_RS03170 PF08753 NikR C terminal nickel binding domain NIDE_RS03185 PF02245 Methylpurine-DNA glycosylase (MPG) NIDE_RS03195 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS03200 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NIDE_RS03220 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS03225 PF00348 Polyprenyl synthetase NIDE_RS03310 PF00175 Oxidoreductase NAD-binding domain NIDE_RS03310 PF00111 2Fe-2S iron-sulfur cluster binding domain NIDE_RS03310 PF00970 Oxidoreductase FAD-binding domain NIDE_RS03325 PF00873 AcrB/AcrD/AcrF family NIDE_RS03330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS03330 PF00529 HlyD membrane-fusion protein of T1SS NIDE_RS03355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIDE_RS03355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS03360 PF00266 Aminotransferase class-V NIDE_RS03365 PF00483 Nucleotidyl transferase NIDE_RS03380 PF00535 Glycosyl transferase family 2 NIDE_RS03385 PF13439 Glycosyltransferase Family 4 NIDE_RS03385 PF00534 Glycosyl transferases group 1 NIDE_RS03405 PF09861 Lactate racemase N-terminal domain NIDE_RS03425 PF13722 5TM C-terminal transporter carbon starvation CstA NIDE_RS03425 PF02554 Carbon starvation protein CstA NIDE_RS03430 PF04461 Protein of unknown function (DUF520) NIDE_RS03445 PF01336 OB-fold nucleic acid binding domain NIDE_RS03445 PF00152 tRNA synthetases class II (D, K and N) NIDE_RS03450 PF01795 MraW methylase family NIDE_RS03455 PF04999 Cell division protein FtsL NIDE_RS03460 PF00905 Penicillin binding protein transpeptidase domain NIDE_RS03460 PF03793 PASTA domain NIDE_RS03460 PF03717 Penicillin-binding Protein dimerisation domain NIDE_RS03465 PF08245 Mur ligase middle domain NIDE_RS03465 PF02875 Mur ligase family, glutamate ligase domain NIDE_RS03465 PF01225 Mur ligase family, catalytic domain NIDE_RS03470 PF08245 Mur ligase middle domain NIDE_RS03470 PF02875 Mur ligase family, glutamate ligase domain NIDE_RS03470 PF01225 Mur ligase family, catalytic domain NIDE_RS03475 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NIDE_RS03475 PF00953 Glycosyl transferase family 4 NIDE_RS03480 PF02875 Mur ligase family, glutamate ligase domain NIDE_RS03480 PF08245 Mur ligase middle domain NIDE_RS03485 PF01098 Cell cycle protein NIDE_RS03490 PF04101 Glycosyltransferase family 28 C-terminal domain NIDE_RS03490 PF03033 Glycosyltransferase family 28 N-terminal domain NIDE_RS03495 PF02875 Mur ligase family, glutamate ligase domain NIDE_RS03495 PF01225 Mur ligase family, catalytic domain NIDE_RS03495 PF08245 Mur ligase middle domain NIDE_RS03500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIDE_RS03500 PF01565 FAD binding domain NIDE_RS03505 PF01820 D-ala D-ala ligase N-terminus NIDE_RS03505 PF07478 D-ala D-ala ligase C-terminus NIDE_RS03515 PF02491 SHS2 domain inserted in FTSA NIDE_RS03520 PF12327 FtsZ family, C-terminal domain NIDE_RS03520 PF00091 Tubulin/FtsZ family, GTPase domain NIDE_RS03525 PF02578 Multi-copper polyphenol oxidoreductase laccase NIDE_RS03530 PF01168 Alanine racemase, N-terminal domain NIDE_RS03535 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIDE_RS03535 PF03807 NADP oxidoreductase coenzyme F420-dependent NIDE_RS03540 PF02325 YGGT family NIDE_RS03545 PF05103 DivIVA protein NIDE_RS03550 PF00144 Beta-lactamase NIDE_RS03560 PF01066 CDP-alcohol phosphatidyltransferase NIDE_RS03565 PF00482 Type II secretion system (T2SS), protein F NIDE_RS03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS03570 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS03570 PF00989 PAS fold NIDE_RS03575 PF02954 Bacterial regulatory protein, Fis family NIDE_RS03575 PF00072 Response regulator receiver domain NIDE_RS03575 PF00158 Sigma-54 interaction domain NIDE_RS03580 PF00288 GHMP kinases N terminal domain NIDE_RS03580 PF08544 GHMP kinases C terminal NIDE_RS03585 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIDE_RS03585 PF14572 Phosphoribosyl synthetase-associated domain NIDE_RS03590 PF14693 Ribosomal protein TL5, C-terminal domain NIDE_RS03590 PF01386 Ribosomal L25p family NIDE_RS03595 PF01195 Peptidyl-tRNA hydrolase NIDE_RS03620 PF01250 Ribosomal protein S6 NIDE_RS03625 PF00436 Single-strand binding protein family NIDE_RS03630 PF01084 Ribosomal protein S18 NIDE_RS03640 PF02504 Fatty acid synthesis protein NIDE_RS03645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIDE_RS03645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIDE_RS03650 PF00698 Acyl transferase domain NIDE_RS03660 PF00550 Phosphopantetheine attachment site NIDE_RS03665 PF00109 Beta-ketoacyl synthase, N-terminal domain NIDE_RS03665 PF02801 Beta-ketoacyl synthase, C-terminal domain NIDE_RS03670 PF00035 Double-stranded RNA binding motif NIDE_RS03670 PF14622 Ribonuclease-III-like NIDE_RS03675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIDE_RS03685 PF01522 Polysaccharide deacetylase NIDE_RS03685 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain NIDE_RS03690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS03690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS03690 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS03690 PF01627 Hpt domain NIDE_RS03690 PF00672 HAMP domain NIDE_RS03690 PF00072 Response regulator receiver domain NIDE_RS03720 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIDE_RS03720 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIDE_RS03730 PF02548 Ketopantoate hydroxymethyltransferase NIDE_RS03740 PF00149 Calcineurin-like phosphoesterase NIDE_RS03755 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS03755 PF01627 Hpt domain NIDE_RS03755 PF00072 Response regulator receiver domain NIDE_RS03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS03755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS03755 PF00672 HAMP domain NIDE_RS03775 PF14489 QueF-like protein NIDE_RS03780 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NIDE_RS03780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS03780 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NIDE_RS03780 PF10371 Domain of unknown function NIDE_RS03780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NIDE_RS03790 PF12800 4Fe-4S binding domain NIDE_RS03800 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NIDE_RS03800 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NIDE_RS03830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIDE_RS03830 PF06827 Zinc finger found in FPG and IleRS NIDE_RS03830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIDE_RS03835 PF00549 CoA-ligase NIDE_RS03835 PF08442 ATP-grasp domain NIDE_RS03840 PF00549 CoA-ligase NIDE_RS03840 PF02629 CoA binding domain NIDE_RS03845 PF00694 Aconitase C-terminal domain NIDE_RS03845 PF00330 Aconitase family (aconitate hydratase) NIDE_RS03850 PF03971 Monomeric isocitrate dehydrogenase NIDE_RS03860 PF02910 Fumarate reductase flavoprotein C-term NIDE_RS03860 PF00890 FAD binding domain NIDE_RS03865 PF00549 CoA-ligase NIDE_RS03865 PF08442 ATP-grasp domain NIDE_RS03870 PF00549 CoA-ligase NIDE_RS03870 PF02629 CoA binding domain NIDE_RS03875 PF04055 Radical SAM superfamily NIDE_RS03875 PF02310 B12 binding domain NIDE_RS03880 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIDE_RS03880 PF05221 S-adenosyl-L-homocysteine hydrolase NIDE_RS03885 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIDE_RS03885 PF02772 S-adenosylmethionine synthetase, central domain NIDE_RS03885 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIDE_RS03890 PF05140 ResB-like family NIDE_RS03895 PF01578 Cytochrome C assembly protein NIDE_RS03900 PF00578 AhpC/TSA family NIDE_RS03905 PF00578 AhpC/TSA family NIDE_RS03910 PF02683 Cytochrome C biogenesis protein transmembrane region NIDE_RS03915 PF01494 FAD binding domain NIDE_RS03925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIDE_RS03925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIDE_RS03935 PF01384 Phosphate transporter family NIDE_RS03940 PF00989 PAS fold NIDE_RS03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS03940 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS03940 PF16736 Single Cache-like NIDE_RS03945 PF00072 Response regulator receiver domain NIDE_RS03945 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS03950 PF02401 LytB protein NIDE_RS03955 PF06470 SMC proteins Flexible Hinge Domain NIDE_RS03955 PF02463 RecF/RecN/SMC N terminal domain NIDE_RS03960 PF13243 Squalene-hopene cyclase C-terminal domain NIDE_RS03960 PF13249 Squalene-hopene cyclase N-terminal domain NIDE_RS03965 PF01048 Phosphorylase superfamily NIDE_RS03970 PF02405 Permease MlaE NIDE_RS03975 PF00005 ABC transporter NIDE_RS03980 PF02470 MlaD protein NIDE_RS04000 PF02779 Transketolase, pyrimidine binding domain NIDE_RS04000 PF02780 Transketolase, C-terminal domain NIDE_RS04000 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIDE_RS04005 PF04551 GcpE protein NIDE_RS04015 PF00999 Sodium/hydrogen exchanger family NIDE_RS04015 PF02254 TrkA-N domain NIDE_RS04035 PF03023 Lipid II flippase MurJ NIDE_RS04070 PF08241 Methyltransferase domain NIDE_RS04075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS04080 PF02397 Bacterial sugar transferase NIDE_RS04085 PF02719 Polysaccharide biosynthesis protein NIDE_RS04090 PF14052 Capsule assembly protein Wzi NIDE_RS04105 PF06463 Molybdenum Cofactor Synthesis C NIDE_RS04105 PF04055 Radical SAM superfamily NIDE_RS04140 PF00032 Cytochrome b(C-terminal)/b6/petD NIDE_RS04140 PF00033 Cytochrome b/b6/petB NIDE_RS04175 PF01040 UbiA prenyltransferase family NIDE_RS04180 PF00400 WD domain, G-beta repeat NIDE_RS04180 PF12894 Anaphase-promoting complex subunit 4 WD40 domain NIDE_RS04195 PF02674 Colicin V production protein NIDE_RS04200 PF01527 Transposase NIDE_RS04250 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIDE_RS04285 PF00072 Response regulator receiver domain NIDE_RS04285 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS04325 PF05175 Methyltransferase small domain NIDE_RS04360 PF01894 Uncharacterised protein family UPF0047 NIDE_RS04365 PF13180 PDZ domain NIDE_RS04370 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS04370 PF17758 Proteasomal ATPase OB N-terminal domain NIDE_RS04370 PF16450 Proteasomal ATPase OB C-terminal domain NIDE_RS04375 PF03136 Pup-ligase protein NIDE_RS04385 PF00227 Proteasome subunit NIDE_RS04395 PF03136 Pup-ligase protein NIDE_RS04410 PF02273 Acyl transferase NIDE_RS04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS04415 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS04445 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NIDE_RS04450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS04475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIDE_RS04475 PF07497 Rho termination factor, RNA-binding domain NIDE_RS04475 PF07498 Rho termination factor, N-terminal domain NIDE_RS04480 PF01197 Ribosomal protein L31 NIDE_RS04485 PF03462 PCRF domain NIDE_RS04485 PF00472 RF-1 domain NIDE_RS04490 PF17827 PrmC N-terminal domain NIDE_RS04490 PF05175 Methyltransferase small domain NIDE_RS04495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIDE_RS04500 PF01634 ATP phosphoribosyltransferase NIDE_RS04505 PF00815 Histidinol dehydrogenase NIDE_RS04510 PF00475 Imidazoleglycerol-phosphate dehydratase NIDE_RS04515 PF00117 Glutamine amidotransferase class-I NIDE_RS04525 PF00977 Histidine biosynthesis protein NIDE_RS04530 PF00977 Histidine biosynthesis protein NIDE_RS04535 PF01502 Phosphoribosyl-AMP cyclohydrolase NIDE_RS04535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NIDE_RS04540 PF01230 HIT domain NIDE_RS04545 PF08275 DNA primase catalytic core, N-terminal domain NIDE_RS04545 PF10410 DnaB-helicase binding domain of primase NIDE_RS04545 PF01807 CHC2 zinc finger NIDE_RS04550 PF04542 Sigma-70 region 2 NIDE_RS04550 PF04546 Sigma-70, non-essential region NIDE_RS04550 PF04539 Sigma-70 region 3 NIDE_RS04550 PF00140 Sigma-70 factor, region 1.2 NIDE_RS04550 PF03979 Sigma-70 factor, region 1.1 NIDE_RS04550 PF04545 Sigma-70, region 4 NIDE_RS04565 PF11858 Domain of unknown function (DUF3378) NIDE_RS04565 PF01351 Ribonuclease HII NIDE_RS04585 PF00205 Thiamine pyrophosphate enzyme, central domain NIDE_RS04585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIDE_RS04585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS04590 PF10369 Small subunit of acetolactate synthase NIDE_RS04590 PF01842 ACT domain NIDE_RS04595 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIDE_RS04595 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIDE_RS04600 PF02666 Phosphatidylserine decarboxylase NIDE_RS04605 PF01066 CDP-alcohol phosphatidyltransferase NIDE_RS04615 PF00682 HMGL-like NIDE_RS04615 PF08502 LeuA allosteric (dimerisation) domain NIDE_RS04625 PF00180 Isocitrate/isopropylmalate dehydrogenase NIDE_RS04635 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIDE_RS04635 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIDE_RS04645 PF08486 Stage II sporulation protein NIDE_RS04650 PF02547 Queuosine biosynthesis protein NIDE_RS04670 PF04085 rod shape-determining protein MreC NIDE_RS04680 PF03717 Penicillin-binding Protein dimerisation domain NIDE_RS04680 PF00905 Penicillin binding protein transpeptidase domain NIDE_RS04685 PF01098 Cell cycle protein NIDE_RS04690 PF00575 S1 RNA binding domain NIDE_RS04690 PF10150 Ribonuclease E/G family NIDE_RS04695 PF17782 DprA winged helix domain NIDE_RS04695 PF02481 DNA recombination-mediator protein A NIDE_RS04700 PF01131 DNA topoisomerase NIDE_RS04700 PF01396 Topoisomerase DNA binding C4 zinc finger NIDE_RS04700 PF01751 Toprim domain NIDE_RS04705 PF00210 Ferritin-like domain NIDE_RS04710 PF00210 Ferritin-like domain NIDE_RS04745 PF02424 ApbE family NIDE_RS04765 PF01618 MotA/TolQ/ExbB proton channel family NIDE_RS04770 PF00005 ABC transporter NIDE_RS04775 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS04785 PF01475 Ferric uptake regulator family NIDE_RS04800 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS04800 PF00072 Response regulator receiver domain NIDE_RS04805 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NIDE_RS04810 PF01596 O-methyltransferase NIDE_RS04815 PF00892 EamA-like transporter family NIDE_RS04820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NIDE_RS04820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NIDE_RS04835 PF00158 Sigma-54 interaction domain NIDE_RS04835 PF00072 Response regulator receiver domain NIDE_RS04835 PF02954 Bacterial regulatory protein, Fis family NIDE_RS04845 PF00072 Response regulator receiver domain NIDE_RS04845 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS04885 PF08669 Glycine cleavage T-protein C-terminal barrel domain NIDE_RS04885 PF01571 Aminomethyltransferase folate-binding domain NIDE_RS04905 PF13667 ThiC-associated domain NIDE_RS04905 PF01964 Radical SAM ThiC family NIDE_RS04925 PF00583 Acetyltransferase (GNAT) family NIDE_RS04935 PF01844 HNH endonuclease NIDE_RS04945 PF06906 Protein of unknown function (DUF1272) NIDE_RS04960 PF02445 Quinolinate synthetase A protein NIDE_RS04965 PF08264 Anticodon-binding domain of tRNA NIDE_RS04965 PF06827 Zinc finger found in FPG and IleRS NIDE_RS04965 PF00133 tRNA synthetases class I (I, L, M and V) NIDE_RS04970 PF01252 Signal peptidase (SPase) II NIDE_RS04980 PF02673 Bacitracin resistance protein BacA NIDE_RS04990 PF13533 Biotin-lipoyl like NIDE_RS04995 PF02687 FtsX-like permease family NIDE_RS04995 PF12704 MacB-like periplasmic core domain NIDE_RS04995 PF00005 ABC transporter NIDE_RS05000 PF00005 ABC transporter NIDE_RS05000 PF02687 FtsX-like permease family NIDE_RS05000 PF12704 MacB-like periplasmic core domain NIDE_RS05015 PF02381 MraZ protein, putative antitoxin-like NIDE_RS05025 PF00156 Phosphoribosyl transferase domain NIDE_RS05030 PF00005 ABC transporter NIDE_RS05035 PF01180 Dihydroorotate dehydrogenase NIDE_RS05045 PF12704 MacB-like periplasmic core domain NIDE_RS05045 PF02687 FtsX-like permease family NIDE_RS05050 PF06968 Biotin and Thiamin Synthesis associated domain NIDE_RS05050 PF04055 Radical SAM superfamily NIDE_RS05065 PF01467 Cytidylyltransferase-like NIDE_RS05070 PF01472 PUA domain NIDE_RS05070 PF00696 Amino acid kinase family NIDE_RS05075 PF01926 50S ribosome-binding GTPase NIDE_RS05075 PF01018 GTP1/OBG NIDE_RS05080 PF01016 Ribosomal L27 protein NIDE_RS05085 PF00829 Ribosomal prokaryotic L21 protein NIDE_RS05090 PF01063 Amino-transferase class IV NIDE_RS05095 PF03840 Preprotein translocase SecG subunit NIDE_RS05100 PF00121 Triosephosphate isomerase NIDE_RS05105 PF00162 Phosphoglycerate kinase NIDE_RS05110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIDE_RS05110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIDE_RS05115 PF01713 Smr domain NIDE_RS05115 PF00488 MutS domain V NIDE_RS05120 PF00989 PAS fold NIDE_RS05120 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS05120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05120 PF16736 Single Cache-like NIDE_RS05125 PF00072 Response regulator receiver domain NIDE_RS05125 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS05155 PF00672 HAMP domain NIDE_RS05155 PF00211 Adenylate and Guanylate cyclase catalytic domain NIDE_RS05155 PF02743 Cache domain NIDE_RS05165 PF01435 Peptidase family M48 NIDE_RS05165 PF13181 Tetratricopeptide repeat NIDE_RS05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05170 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS05170 PF00989 PAS fold NIDE_RS05175 PF00158 Sigma-54 interaction domain NIDE_RS05175 PF00072 Response regulator receiver domain NIDE_RS05175 PF02954 Bacterial regulatory protein, Fis family NIDE_RS05180 PF08331 Domain of unknown function (DUF1730) NIDE_RS05190 PF00072 Response regulator receiver domain NIDE_RS05190 PF03861 ANTAR domain NIDE_RS05200 PF02926 THUMP domain NIDE_RS05200 PF02568 Thiamine biosynthesis protein (ThiI) NIDE_RS05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS05210 PF01121 Dephospho-CoA kinase NIDE_RS05275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIDE_RS05275 PF13378 Enolase C-terminal domain-like NIDE_RS05280 PF00174 Oxidoreductase molybdopterin binding domain NIDE_RS05290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIDE_RS05290 PF00403 Heavy-metal-associated domain NIDE_RS05290 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS05310 PF12627 Probable RNA and SrmB- binding site of polymerase A NIDE_RS05310 PF01743 Poly A polymerase head domain NIDE_RS05310 PF02272 DHHA1 domain NIDE_RS05310 PF01368 DHH family NIDE_RS05310 PF00571 CBS domain NIDE_RS05320 PF02626 Carboxyltransferase domain, subdomain A and B NIDE_RS05325 PF03746 LamB/YcsF family NIDE_RS05330 PF02682 Carboxyltransferase domain, subdomain C and D NIDE_RS05335 PF07690 Major Facilitator Superfamily NIDE_RS05345 PF01979 Amidohydrolase family NIDE_RS05355 PF00266 Aminotransferase class-V NIDE_RS05370 PF07730 Histidine kinase NIDE_RS05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05370 PF05384 Sensor protein DegS NIDE_RS05375 PF00072 Response regulator receiver domain NIDE_RS05375 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS05390 PF00270 DEAD/DEAH box helicase NIDE_RS05390 PF08494 DEAD/H associated NIDE_RS05390 PF00271 Helicase conserved C-terminal domain NIDE_RS05470 PF01553 Acyltransferase NIDE_RS05470 PF00501 AMP-binding enzyme NIDE_RS05470 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS05475 PF00488 MutS domain V NIDE_RS05475 PF05190 MutS family domain IV NIDE_RS05475 PF05192 MutS domain III NIDE_RS05475 PF05188 MutS domain II NIDE_RS05475 PF01624 MutS domain I NIDE_RS05495 PF12867 DinB superfamily NIDE_RS05495 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS05520 PF08543 Phosphomethylpyrimidine kinase NIDE_RS05545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIDE_RS05545 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS05550 PF08534 Redoxin NIDE_RS05555 PF12697 Alpha/beta hydrolase family NIDE_RS05560 PF02436 Conserved carboxylase domain NIDE_RS05560 PF00364 Biotin-requiring enzyme NIDE_RS05560 PF00682 HMGL-like NIDE_RS05565 PF00289 Biotin carboxylase, N-terminal domain NIDE_RS05565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIDE_RS05565 PF02785 Biotin carboxylase C-terminal domain NIDE_RS05575 PF12849 PBP superfamily domain NIDE_RS05605 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIDE_RS05610 PF00762 Ferrochelatase NIDE_RS05615 PF01593 Flavin containing amine oxidoreductase NIDE_RS05630 PF03819 MazG nucleotide pyrophosphohydrolase domain NIDE_RS05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05640 PF00672 HAMP domain NIDE_RS05640 PF00989 PAS fold NIDE_RS05640 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS05645 PF00158 Sigma-54 interaction domain NIDE_RS05645 PF02954 Bacterial regulatory protein, Fis family NIDE_RS05645 PF00072 Response regulator receiver domain NIDE_RS05650 PF00586 AIR synthase related protein, N-terminal domain NIDE_RS05650 PF02769 AIR synthase related protein, C-terminal domain NIDE_RS05655 PF00551 Formyl transferase NIDE_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05670 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS05670 PF00072 Response regulator receiver domain NIDE_RS05670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS05670 PF01627 Hpt domain NIDE_RS05670 PF00672 HAMP domain NIDE_RS05675 PF00360 Phytochrome region NIDE_RS05675 PF00563 EAL domain NIDE_RS05675 PF01590 GAF domain NIDE_RS05675 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS05680 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS05680 PF00072 Response regulator receiver domain NIDE_RS05695 PF07690 Major Facilitator Superfamily NIDE_RS05710 PF00255 Glutathione peroxidase NIDE_RS05715 PF01435 Peptidase family M48 NIDE_RS05755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIDE_RS05755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIDE_RS05765 PF00708 Acylphosphatase NIDE_RS05770 PF00140 Sigma-70 factor, region 1.2 NIDE_RS05770 PF03979 Sigma-70 factor, region 1.1 NIDE_RS05770 PF04542 Sigma-70 region 2 NIDE_RS05770 PF04545 Sigma-70, region 4 NIDE_RS05770 PF04539 Sigma-70 region 3 NIDE_RS05775 PF00156 Phosphoribosyl transferase domain NIDE_RS05785 PF06508 Queuosine biosynthesis protein QueC NIDE_RS05805 PF02446 4-alpha-glucanotransferase NIDE_RS05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS05810 PF08448 PAS fold NIDE_RS05810 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS05810 PF00072 Response regulator receiver domain NIDE_RS05810 PF13188 PAS domain NIDE_RS05815 PF00158 Sigma-54 interaction domain NIDE_RS05815 PF02954 Bacterial regulatory protein, Fis family NIDE_RS05815 PF00072 Response regulator receiver domain NIDE_RS05860 PF02661 Fic/DOC family NIDE_RS05890 PF00589 Phage integrase family NIDE_RS05920 PF13732 Domain of unknown function (DUF4162) NIDE_RS05920 PF00005 ABC transporter NIDE_RS05960 PF00343 Carbohydrate phosphorylase NIDE_RS05960 PF11897 Protein of unknown function (DUF3417) NIDE_RS05970 PF00580 UvrD/REP helicase N-terminal domain NIDE_RS05970 PF13361 UvrD-like helicase C-terminal domain NIDE_RS05995 PF03144 Elongation factor Tu domain 2 NIDE_RS05995 PF00009 Elongation factor Tu GTP binding domain NIDE_RS05995 PF03143 Elongation factor Tu C-terminal domain NIDE_RS06000 PF00471 Ribosomal protein L33 NIDE_RS06010 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIDE_RS06015 PF00467 KOW motif NIDE_RS06015 PF02357 Transcription termination factor nusG NIDE_RS06020 PF00298 Ribosomal protein L11, RNA binding domain NIDE_RS06020 PF03946 Ribosomal protein L11, N-terminal domain NIDE_RS06025 PF00687 Ribosomal protein L1p/L10e family NIDE_RS06030 PF16320 Ribosomal protein L7/L12 dimerisation domain NIDE_RS06030 PF00542 Ribosomal protein L7/L12 C-terminal domain NIDE_RS06035 PF04563 RNA polymerase beta subunit NIDE_RS06035 PF04560 RNA polymerase Rpb2, domain 7 NIDE_RS06035 PF04565 RNA polymerase Rpb2, domain 3 NIDE_RS06035 PF00562 RNA polymerase Rpb2, domain 6 NIDE_RS06035 PF10385 RNA polymerase beta subunit external 1 domain NIDE_RS06035 PF04561 RNA polymerase Rpb2, domain 2 NIDE_RS06040 PF00623 RNA polymerase Rpb1, domain 2 NIDE_RS06040 PF04997 RNA polymerase Rpb1, domain 1 NIDE_RS06040 PF04983 RNA polymerase Rpb1, domain 3 NIDE_RS06040 PF05000 RNA polymerase Rpb1, domain 4 NIDE_RS06040 PF04998 RNA polymerase Rpb1, domain 5 NIDE_RS06045 PF00164 Ribosomal protein S12/S23 NIDE_RS06050 PF00177 Ribosomal protein S7p/S5e NIDE_RS06055 PF00009 Elongation factor Tu GTP binding domain NIDE_RS06055 PF03764 Elongation factor G, domain IV NIDE_RS06055 PF14492 Elongation Factor G, domain II NIDE_RS06055 PF00679 Elongation factor G C-terminus NIDE_RS06055 PF03144 Elongation factor Tu domain 2 NIDE_RS06060 PF03143 Elongation factor Tu C-terminal domain NIDE_RS06060 PF00009 Elongation factor Tu GTP binding domain NIDE_RS06060 PF03144 Elongation factor Tu domain 2 NIDE_RS06065 PF00338 Ribosomal protein S10p/S20e NIDE_RS06070 PF00297 Ribosomal protein L3 NIDE_RS06080 PF00276 Ribosomal protein L23 NIDE_RS06085 PF00181 Ribosomal Proteins L2, RNA binding domain NIDE_RS06085 PF03947 Ribosomal Proteins L2, C-terminal domain NIDE_RS06090 PF00203 Ribosomal protein S19 NIDE_RS06095 PF00237 Ribosomal protein L22p/L17e NIDE_RS06100 PF00189 Ribosomal protein S3, C-terminal domain NIDE_RS06100 PF07650 KH domain NIDE_RS06105 PF00252 Ribosomal protein L16p/L10e NIDE_RS06110 PF00831 Ribosomal L29 protein NIDE_RS06115 PF00366 Ribosomal protein S17 NIDE_RS06120 PF00238 Ribosomal protein L14p/L23e NIDE_RS06125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIDE_RS06125 PF00467 KOW motif NIDE_RS06130 PF00673 ribosomal L5P family C-terminus NIDE_RS06130 PF00281 Ribosomal protein L5 NIDE_RS06135 PF00410 Ribosomal protein S8 NIDE_RS06140 PF00347 Ribosomal protein L6 NIDE_RS06145 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIDE_RS06150 PF03719 Ribosomal protein S5, C-terminal domain NIDE_RS06150 PF00333 Ribosomal protein S5, N-terminal domain NIDE_RS06155 PF00327 Ribosomal protein L30p/L7e NIDE_RS06160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIDE_RS06165 PF00344 SecY translocase NIDE_RS06170 PF05191 Adenylate kinase, active site lid NIDE_RS06175 PF00557 Metallopeptidase family M24 NIDE_RS06180 PF01176 Translation initiation factor 1A / IF-1 NIDE_RS06185 PF00416 Ribosomal protein S13/S18 NIDE_RS06190 PF00411 Ribosomal protein S11 NIDE_RS06195 PF00163 Ribosomal protein S4/S9 N-terminal domain NIDE_RS06195 PF01479 S4 domain NIDE_RS06200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIDE_RS06200 PF01000 RNA polymerase Rpb3/RpoA insert domain NIDE_RS06200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIDE_RS06205 PF01196 Ribosomal protein L17 NIDE_RS06220 PF00005 ABC transporter NIDE_RS06225 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIDE_RS06225 PF04552 Sigma-54, DNA binding domain NIDE_RS06225 PF04963 Sigma-54 factor, core binding domain NIDE_RS06230 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NIDE_RS06230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIDE_RS06235 PF03668 P-loop ATPase protein family NIDE_RS06245 PF11104 Type IV pilus assembly protein PilM; NIDE_RS06270 PF01761 3-dehydroquinate synthase NIDE_RS06275 PF08376 Nitrate and nitrite sensing NIDE_RS06275 PF03861 ANTAR domain NIDE_RS06290 PF00795 Carbon-nitrogen hydrolase NIDE_RS06290 PF02540 NAD synthase NIDE_RS06300 PF00909 Ammonium Transporter Family NIDE_RS06305 PF00543 Nitrogen regulatory protein P-II NIDE_RS06310 PF01966 HD domain NIDE_RS06310 PF08335 GlnD PII-uridylyltransferase NIDE_RS06310 PF01909 Nucleotidyltransferase domain NIDE_RS06315 PF00120 Glutamine synthetase, catalytic domain NIDE_RS06315 PF03951 Glutamine synthetase, beta-Grasp domain NIDE_RS06320 PF01226 Formate/nitrite transporter NIDE_RS06325 PF02560 Cyanate lyase C-terminal domain NIDE_RS06335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIDE_RS06335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIDE_RS06360 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIDE_RS06375 PF03710 Glutamate-ammonia ligase adenylyltransferase NIDE_RS06375 PF08335 GlnD PII-uridylyltransferase NIDE_RS06380 PF08335 GlnD PII-uridylyltransferase NIDE_RS06380 PF03710 Glutamate-ammonia ligase adenylyltransferase NIDE_RS06385 PF00118 TCP-1/cpn60 chaperonin family NIDE_RS06390 PF00166 Chaperonin 10 Kd subunit NIDE_RS06400 PF04545 Sigma-70, region 4 NIDE_RS06400 PF04542 Sigma-70 region 2 NIDE_RS06400 PF00140 Sigma-70 factor, region 1.2 NIDE_RS06405 PF07690 Major Facilitator Superfamily NIDE_RS06410 PF00925 GTP cyclohydrolase II NIDE_RS06410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIDE_RS06415 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIDE_RS06420 PF01029 NusB family NIDE_RS06425 PF10397 Adenylosuccinate lyase C-terminus NIDE_RS06425 PF00206 Lyase NIDE_RS06430 PF06778 Chlorite dismutase NIDE_RS06435 PF01259 SAICAR synthetase NIDE_RS06445 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NIDE_RS06455 PF00586 AIR synthase related protein, N-terminal domain NIDE_RS06455 PF02769 AIR synthase related protein, C-terminal domain NIDE_RS06455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIDE_RS06460 PF00156 Phosphoribosyl transferase domain NIDE_RS06475 PF02603 HPr Serine kinase N terminus NIDE_RS06475 PF07475 HPr Serine kinase C-terminal domain NIDE_RS06530 PF00270 DEAD/DEAH box helicase NIDE_RS06530 PF17191 RecG wedge domain NIDE_RS06530 PF00271 Helicase conserved C-terminal domain NIDE_RS06540 PF02541 Ppx/GppA phosphatase family NIDE_RS06565 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS06565 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIDE_RS06565 PF05362 Lon protease (S16) C-terminal proteolytic domain NIDE_RS06575 PF02616 Segregation and condensation protein ScpA NIDE_RS06595 PF00571 CBS domain NIDE_RS06595 PF00478 IMP dehydrogenase / GMP reductase domain NIDE_RS06600 PF02540 NAD synthase NIDE_RS06600 PF00958 GMP synthase C terminal domain NIDE_RS06600 PF00117 Glutamine amidotransferase class-I NIDE_RS06605 PF01479 S4 domain NIDE_RS06605 PF00849 RNA pseudouridylate synthase NIDE_RS06610 PF00152 tRNA synthetases class II (D, K and N) NIDE_RS06610 PF01336 OB-fold nucleic acid binding domain NIDE_RS06610 PF02938 GAD domain NIDE_RS06615 PF01264 Chorismate synthase NIDE_RS06620 PF00075 RNase H NIDE_RS06625 PF00005 ABC transporter NIDE_RS06630 PF13180 PDZ domain NIDE_RS06640 PF04228 Putative neutral zinc metallopeptidase NIDE_RS06650 PF00849 RNA pseudouridylate synthase NIDE_RS06655 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIDE_RS06655 PF03625 Domain of unknown function DUF302 NIDE_RS06680 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIDE_RS06680 PF13378 Enolase C-terminal domain-like NIDE_RS06715 PF03167 Uracil DNA glycosylase superfamily NIDE_RS06720 PF00194 Eukaryotic-type carbonic anhydrase NIDE_RS06750 PF01521 Iron-sulphur cluster biosynthesis NIDE_RS06760 PF02796 Helix-turn-helix domain of resolvase NIDE_RS06760 PF00665 Integrase core domain NIDE_RS06765 PF01695 IstB-like ATP binding protein NIDE_RS06770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS06775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS06775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NIDE_RS06775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NIDE_RS06775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NIDE_RS06775 PF10371 Domain of unknown function NIDE_RS06805 PF00271 Helicase conserved C-terminal domain NIDE_RS06805 PF00270 DEAD/DEAH box helicase NIDE_RS06820 PF01590 GAF domain NIDE_RS06820 PF00158 Sigma-54 interaction domain NIDE_RS06840 PF00535 Glycosyl transferase family 2 NIDE_RS06850 PF01464 Transglycosylase SLT domain NIDE_RS06850 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NIDE_RS06860 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS06860 PF00072 Response regulator receiver domain NIDE_RS06885 PF00072 Response regulator receiver domain NIDE_RS06885 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS06895 PF00072 Response regulator receiver domain NIDE_RS06905 PF00472 RF-1 domain NIDE_RS06930 PF03279 Bacterial lipid A biosynthesis acyltransferase NIDE_RS06945 PF02405 Permease MlaE NIDE_RS06950 PF09383 NIL domain NIDE_RS06950 PF00005 ABC transporter NIDE_RS06965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIDE_RS06965 PF00437 Type II/IV secretion system protein NIDE_RS06970 PF03129 Anticodon binding domain NIDE_RS06970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIDE_RS06970 PF04073 Aminoacyl-tRNA editing domain NIDE_RS06975 PF17820 PDZ domain NIDE_RS06975 PF02163 Peptidase family M50 NIDE_RS06980 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIDE_RS06980 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIDE_RS06980 PF13288 DXP reductoisomerase C-terminal domain NIDE_RS06990 PF01255 Putative undecaprenyl diphosphate synthase NIDE_RS06995 PF01523 Putative modulator of DNA gyrase NIDE_RS07000 PF01523 Putative modulator of DNA gyrase NIDE_RS07005 PF01161 Phosphatidylethanolamine-binding protein NIDE_RS07015 PF03167 Uracil DNA glycosylase superfamily NIDE_RS07020 PF01266 FAD dependent oxidoreductase NIDE_RS07030 PF01497 Periplasmic binding protein NIDE_RS07035 PF13419 Haloacid dehalogenase-like hydrolase NIDE_RS07060 PF16697 Inner membrane component of T3SS, cytoplasmic domain NIDE_RS07115 PF00271 Helicase conserved C-terminal domain NIDE_RS07115 PF00270 DEAD/DEAH box helicase NIDE_RS07115 PF18019 HD domain NIDE_RS07130 PF09344 CT1975-like protein NIDE_RS07135 PF09704 CRISPR-associated protein (Cas_Cas5) NIDE_RS07145 PF01867 CRISPR associated protein Cas1 NIDE_RS07150 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) NIDE_RS07160 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NIDE_RS07165 PF13657 HipA N-terminal domain NIDE_RS07165 PF07804 HipA-like C-terminal domain NIDE_RS07190 PF00072 Response regulator receiver domain NIDE_RS07190 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS07195 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS07195 PF00672 HAMP domain NIDE_RS07195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS07215 PF04286 Protein of unknown function (DUF445) NIDE_RS07225 PF00375 Sodium:dicarboxylate symporter family NIDE_RS07235 PF01967 MoaC family NIDE_RS07245 PF02391 MoaE protein NIDE_RS07250 PF04055 Radical SAM superfamily NIDE_RS07250 PF06463 Molybdenum Cofactor Synthesis C NIDE_RS07255 PF13386 Cytochrome C biogenesis protein transmembrane region NIDE_RS07265 PF01039 Carboxyl transferase domain NIDE_RS07265 PF17848 Acetyl-coA carboxylase zinc finger domain NIDE_RS07275 PF08245 Mur ligase middle domain NIDE_RS07275 PF02875 Mur ligase family, glutamate ligase domain NIDE_RS07280 PF04453 LPS transport system D NIDE_RS07290 PF00085 Thioredoxin NIDE_RS07295 PF13476 AAA domain NIDE_RS07300 PF00072 Response regulator receiver domain NIDE_RS07305 PF02954 Bacterial regulatory protein, Fis family NIDE_RS07305 PF00072 Response regulator receiver domain NIDE_RS07305 PF00158 Sigma-54 interaction domain NIDE_RS07315 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS07360 PF00578 AhpC/TSA family NIDE_RS07400 PF08281 Sigma-70, region 4 NIDE_RS07400 PF04542 Sigma-70 region 2 NIDE_RS07450 PF17850 CysA C-terminal regulatory domain NIDE_RS07450 PF00005 ABC transporter NIDE_RS07450 PF12857 TOBE-like domain NIDE_RS07455 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS07460 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS07470 PF02082 Transcriptional regulator NIDE_RS07495 PF02091 Glycyl-tRNA synthetase alpha subunit NIDE_RS07500 PF02092 Glycyl-tRNA synthetase beta subunit NIDE_RS07500 PF05746 DALR anticodon binding domain NIDE_RS07510 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIDE_RS07510 PF00391 PEP-utilising enzyme, mobile domain NIDE_RS07510 PF02896 PEP-utilising enzyme, TIM barrel domain NIDE_RS07515 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIDE_RS07515 PF01872 RibD C-terminal domain NIDE_RS07530 PF13649 Methyltransferase domain NIDE_RS07535 PF07690 Major Facilitator Superfamily NIDE_RS07540 PF00677 Lumazine binding domain NIDE_RS07550 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS07550 PF16177 Acetyl-coenzyme A synthetase N-terminus NIDE_RS07550 PF00501 AMP-binding enzyme NIDE_RS07600 PF03807 NADP oxidoreductase coenzyme F420-dependent NIDE_RS07600 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIDE_RS07610 PF02899 Phage integrase, N-terminal SAM-like domain NIDE_RS07610 PF00589 Phage integrase family NIDE_RS07670 PF00205 Thiamine pyrophosphate enzyme, central domain NIDE_RS07670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS07670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIDE_RS07675 PF17785 PUA-like domain NIDE_RS07675 PF10672 S-adenosylmethionine-dependent methyltransferase NIDE_RS07680 PF03169 OPT oligopeptide transporter protein NIDE_RS07695 PF00588 SpoU rRNA Methylase family NIDE_RS07695 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIDE_RS07700 PF18073 Rubredoxin metal binding domain NIDE_RS07710 PF00814 Glycoprotease family NIDE_RS07725 PF00902 Sec-independent protein translocase protein (TatC) NIDE_RS07735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIDE_RS07755 PF00873 AcrB/AcrD/AcrF family NIDE_RS07760 PF00072 Response regulator receiver domain NIDE_RS07770 PF07690 Major Facilitator Superfamily NIDE_RS07775 PF07690 Major Facilitator Superfamily NIDE_RS07825 PF00154 recA bacterial DNA recombination protein NIDE_RS07835 PF02272 DHHA1 domain NIDE_RS07835 PF01411 tRNA synthetases class II (A) NIDE_RS07835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIDE_RS07845 PF02618 YceG-like family NIDE_RS07850 PF01791 DeoC/LacD family aldolase NIDE_RS07855 PF01676 Metalloenzyme superfamily NIDE_RS07870 PF05593 RHS Repeat NIDE_RS07890 PF01381 Helix-turn-helix NIDE_RS07920 PF04452 RNA methyltransferase NIDE_RS07925 PF00684 DnaJ central domain NIDE_RS07925 PF00226 DnaJ domain NIDE_RS07925 PF01556 DnaJ C terminal domain NIDE_RS07930 PF00012 Hsp70 protein NIDE_RS07935 PF01025 GrpE NIDE_RS07940 PF03309 Type III pantothenate kinase NIDE_RS07945 PF02237 Biotin protein ligase C terminal domain NIDE_RS07945 PF03099 Biotin/lipoate A/B protein ligase family NIDE_RS07945 PF08279 HTH domain NIDE_RS07950 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIDE_RS07950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIDE_RS07955 PF08264 Anticodon-binding domain of tRNA NIDE_RS07955 PF00133 tRNA synthetases class I (I, L, M and V) NIDE_RS07955 PF10458 Valyl tRNA synthetase tRNA binding arm NIDE_RS07970 PF02146 Sir2 family NIDE_RS07975 PF08546 Ketopantoate reductase PanE/ApbA C terminal NIDE_RS07975 PF02558 Ketopantoate reductase PanE/ApbA NIDE_RS07980 PF01554 MatE NIDE_RS07995 PF00501 AMP-binding enzyme NIDE_RS07995 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS07995 PF00501 AMP-binding enzyme NIDE_RS07995 PF00550 Phosphopantetheine attachment site NIDE_RS07995 PF00668 Condensation domain NIDE_RS07995 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS07995 PF00668 Condensation domain NIDE_RS07995 PF00550 Phosphopantetheine attachment site NIDE_RS08000 PF00664 ABC transporter transmembrane region NIDE_RS08000 PF00005 ABC transporter NIDE_RS08005 PF01648 4'-phosphopantetheinyl transferase superfamily NIDE_RS08010 PF14437 MafB19-like deaminase NIDE_RS08020 PF04542 Sigma-70 region 2 NIDE_RS08020 PF04545 Sigma-70, region 4 NIDE_RS08100 PF00072 Response regulator receiver domain NIDE_RS08100 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS08105 PF00873 AcrB/AcrD/AcrF family NIDE_RS08115 PF02321 Outer membrane efflux protein NIDE_RS08125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIDE_RS08125 PF00361 Proton-conducting membrane transporter NIDE_RS08125 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus NIDE_RS08130 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) NIDE_RS08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS08140 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS08140 PF13426 PAS domain NIDE_RS08140 PF13188 PAS domain NIDE_RS08140 PF00989 PAS fold NIDE_RS08145 PF00158 Sigma-54 interaction domain NIDE_RS08145 PF00072 Response regulator receiver domain NIDE_RS08145 PF02954 Bacterial regulatory protein, Fis family NIDE_RS08185 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS08240 PF00270 DEAD/DEAH box helicase NIDE_RS08240 PF08148 DSHCT (NUC185) domain NIDE_RS08240 PF00271 Helicase conserved C-terminal domain NIDE_RS08245 PF00483 Nucleotidyl transferase NIDE_RS08255 PF08402 TOBE domain NIDE_RS08255 PF00005 ABC transporter NIDE_RS08260 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS08265 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS08270 PF13416 Bacterial extracellular solute-binding protein NIDE_RS08280 PF13533 Biotin-lipoyl like NIDE_RS08285 PF00873 AcrB/AcrD/AcrF family NIDE_RS08295 PF01327 Polypeptide deformylase NIDE_RS08300 PF00664 ABC transporter transmembrane region NIDE_RS08300 PF00005 ABC transporter NIDE_RS08325 PF00899 ThiF family NIDE_RS08335 PF02597 ThiS family NIDE_RS08340 PF00291 Pyridoxal-phosphate dependent enzyme NIDE_RS08345 PF00899 ThiF family NIDE_RS08350 PF00291 Pyridoxal-phosphate dependent enzyme NIDE_RS08370 PF01494 FAD binding domain NIDE_RS08400 PF02371 Transposase IS116/IS110/IS902 family NIDE_RS08400 PF01548 Transposase NIDE_RS08485 PF04055 Radical SAM superfamily NIDE_RS08510 PF00072 Response regulator receiver domain NIDE_RS08515 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS08515 PF00072 Response regulator receiver domain NIDE_RS08520 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS08555 PF02310 B12 binding domain NIDE_RS08555 PF02607 B12 binding domain NIDE_RS08555 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIDE_RS08555 PF00809 Pterin binding enzyme NIDE_RS08555 PF02574 Homocysteine S-methyltransferase NIDE_RS08565 PF00072 Response regulator receiver domain NIDE_RS08570 PF01138 3' exoribonuclease family, domain 1 NIDE_RS08570 PF03725 3' exoribonuclease family, domain 2 NIDE_RS08595 PF00578 AhpC/TSA family NIDE_RS08595 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIDE_RS08610 PF00072 Response regulator receiver domain NIDE_RS08615 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain NIDE_RS08615 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain NIDE_RS08620 PF04199 Putative cyclase NIDE_RS08650 PF01641 SelR domain NIDE_RS08655 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIDE_RS08655 PF05362 Lon protease (S16) C-terminal proteolytic domain NIDE_RS08655 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS08665 PF00982 Glycosyltransferase family 20 NIDE_RS08670 PF01170 Putative RNA methylase family UPF0020 NIDE_RS08670 PF02926 THUMP domain NIDE_RS08675 PF00293 NUDIX domain NIDE_RS08675 PF09297 NADH pyrophosphatase zinc ribbon domain NIDE_RS08695 PF12161 HsdM N-terminal domain NIDE_RS08695 PF02384 N-6 DNA Methylase NIDE_RS08700 PF06250 YhcG PDDEXK nuclease domain NIDE_RS08700 PF17761 DUF1016 N-terminal domain NIDE_RS08705 PF01420 Type I restriction modification DNA specificity domain NIDE_RS08730 PF00149 Calcineurin-like phosphoesterase NIDE_RS08735 PF13514 AAA domain NIDE_RS08740 PF00672 HAMP domain NIDE_RS08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS08740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS08740 PF00072 Response regulator receiver domain NIDE_RS08740 PF01627 Hpt domain NIDE_RS08740 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS08770 PF00730 HhH-GPD superfamily base excision DNA repair protein NIDE_RS08770 PF00633 Helix-hairpin-helix motif NIDE_RS08770 PF14815 NUDIX domain NIDE_RS08775 PF00293 NUDIX domain NIDE_RS08790 PF04055 Radical SAM superfamily NIDE_RS08790 PF00919 Uncharacterized protein family UPF0004 NIDE_RS08790 PF01938 TRAM domain NIDE_RS08795 PF00919 Uncharacterized protein family UPF0004 NIDE_RS08795 PF04055 Radical SAM superfamily NIDE_RS08795 PF01938 TRAM domain NIDE_RS08805 PF00582 Universal stress protein family NIDE_RS08810 PF01738 Dienelactone hydrolase family NIDE_RS08810 PF00156 Phosphoribosyl transferase domain NIDE_RS08845 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIDE_RS08845 PF00037 4Fe-4S binding domain NIDE_RS08845 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIDE_RS08850 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIDE_RS08850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIDE_RS08850 PF12838 4Fe-4S dicluster domain NIDE_RS08850 PF01568 Molydopterin dinucleotide binding domain NIDE_RS08850 PF00384 Molybdopterin oxidoreductase NIDE_RS08855 PF01226 Formate/nitrite transporter NIDE_RS08860 PF07690 Major Facilitator Superfamily NIDE_RS08875 PF08471 Class II vitamin B12-dependent ribonucleotide reductase NIDE_RS08875 PF02867 Ribonucleotide reductase, barrel domain NIDE_RS09010 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NIDE_RS09020 PF06761 Intracellular multiplication and human macrophage-killing NIDE_RS09020 PF14331 ImcF-related N-terminal domain NIDE_RS09020 PF06744 Type VI secretion protein IcmF C-terminal NIDE_RS09040 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NIDE_RS09045 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIDE_RS09070 PF05947 Type VI secretion system, TssF NIDE_RS09080 PF10431 C-terminal, D2-small domain, of ClpB protein NIDE_RS09080 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS09080 PF07724 AAA domain (Cdc48 subfamily) NIDE_RS09080 PF17871 AAA lid domain NIDE_RS09090 PF04717 Type VI secretion system, phage-baseplate injector NIDE_RS09090 PF06715 Gp5 C-terminal repeat (3 copies) NIDE_RS09120 PF00691 OmpA family NIDE_RS09135 PF00665 Integrase core domain NIDE_RS09135 PF02796 Helix-turn-helix domain of resolvase NIDE_RS09140 PF01695 IstB-like ATP binding protein NIDE_RS09160 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIDE_RS09190 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIDE_RS09220 PF00158 Sigma-54 interaction domain NIDE_RS09220 PF00072 Response regulator receiver domain NIDE_RS09220 PF02954 Bacterial regulatory protein, Fis family NIDE_RS09225 PF13188 PAS domain NIDE_RS09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS09225 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS09225 PF00989 PAS fold NIDE_RS09225 PF13426 PAS domain NIDE_RS09240 PF01476 LysM domain NIDE_RS09240 PF01464 Transglycosylase SLT domain NIDE_RS09260 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIDE_RS09260 PF17287 POTRA domain NIDE_RS09260 PF08479 POTRA domain, ShlB-type NIDE_RS09275 PF01950 Fructose-1,6-bisphosphatase NIDE_RS09290 PF03330 Lytic transglycolase NIDE_RS09290 PF05036 Sporulation related domain NIDE_RS09295 PF00571 CBS domain NIDE_RS09295 PF01595 Cyclin M transmembrane N-terminal domain NIDE_RS09300 PF12826 Helix-hairpin-helix motif NIDE_RS09300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIDE_RS09300 PF00533 BRCA1 C Terminus (BRCT) domain NIDE_RS09300 PF01653 NAD-dependent DNA ligase adenylation domain NIDE_RS09300 PF03120 NAD-dependent DNA ligase OB-fold domain NIDE_RS09310 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIDE_RS09310 PF17864 RuvB AAA lid domain NIDE_RS09310 PF05491 RuvB C-terminal winged helix domain NIDE_RS09315 PF01476 LysM domain NIDE_RS09315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NIDE_RS09320 PF00425 chorismate binding enzyme NIDE_RS09320 PF04715 Anthranilate synthase component I, N terminal region NIDE_RS09325 PF00117 Glutamine amidotransferase class-I NIDE_RS09330 PF00591 Glycosyl transferase family, a/b domain NIDE_RS09330 PF02885 Glycosyl transferase family, helical bundle domain NIDE_RS09335 PF00218 Indole-3-glycerol phosphate synthase NIDE_RS09345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIDE_RS09350 PF00291 Pyridoxal-phosphate dependent enzyme NIDE_RS09355 PF00290 Tryptophan synthase alpha chain NIDE_RS09375 PF00005 ABC transporter NIDE_RS09380 PF12704 MacB-like periplasmic core domain NIDE_RS09380 PF02687 FtsX-like permease family NIDE_RS09385 PF01336 OB-fold nucleic acid binding domain NIDE_RS09385 PF00152 tRNA synthetases class II (D, K and N) NIDE_RS09395 PF00795 Carbon-nitrogen hydrolase NIDE_RS09450 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS09450 PF00072 Response regulator receiver domain NIDE_RS09505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIDE_RS09505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIDE_RS09505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIDE_RS09505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIDE_RS09515 PF12705 PD-(D/E)XK nuclease superfamily NIDE_RS09520 PF00580 UvrD/REP helicase N-terminal domain NIDE_RS09520 PF13361 UvrD-like helicase C-terminal domain NIDE_RS09520 PF12705 PD-(D/E)XK nuclease superfamily NIDE_RS09530 PF01790 Prolipoprotein diacylglyceryl transferase NIDE_RS09545 PF01903 CbiX NIDE_RS09565 PF01888 CbiD NIDE_RS09570 PF02570 Precorrin-8X methylmutase NIDE_RS09575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS09580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS09585 PF11760 Cobalamin synthesis G N-terminal NIDE_RS09585 PF11761 Cobalamin biosynthesis central region NIDE_RS09585 PF01890 Cobalamin synthesis G C-terminus NIDE_RS09590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS09590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIDE_RS09600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS09610 PF00881 Nitroreductase family NIDE_RS09615 PF07685 CobB/CobQ-like glutamine amidotransferase domain NIDE_RS09615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS09620 PF03824 High-affinity nickel-transport protein NIDE_RS09625 PF00593 TonB dependent receptor NIDE_RS09625 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS09645 PF00437 Type II/IV secretion system protein NIDE_RS09670 PF13629 Pilus formation protein N terminal region NIDE_RS09670 PF00263 Bacterial type II and III secretion system protein NIDE_RS09670 PF04972 BON domain NIDE_RS09685 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS09685 PF00072 Response regulator receiver domain NIDE_RS09690 PF13466 STAS domain NIDE_RS09710 PF00571 CBS domain NIDE_RS09710 PF01368 DHH family NIDE_RS09710 PF02833 DHHA2 domain NIDE_RS09710 PF07085 DRTGG domain NIDE_RS09720 PF00106 short chain dehydrogenase NIDE_RS09745 PF13683 Integrase core domain NIDE_RS09745 PF13276 HTH-like domain NIDE_RS09750 PF01527 Transposase NIDE_RS09770 PF02796 Helix-turn-helix domain of resolvase NIDE_RS09770 PF00665 Integrase core domain NIDE_RS09775 PF01695 IstB-like ATP binding protein NIDE_RS09790 PF01381 Helix-turn-helix NIDE_RS09795 PF05973 Phage derived protein Gp49-like (DUF891) NIDE_RS09835 PF00668 Condensation domain NIDE_RS09835 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS09835 PF00550 Phosphopantetheine attachment site NIDE_RS09835 PF00501 AMP-binding enzyme NIDE_RS09840 PF00550 Phosphopantetheine attachment site NIDE_RS09840 PF00501 AMP-binding enzyme NIDE_RS09840 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS09840 PF00668 Condensation domain NIDE_RS09845 PF00109 Beta-ketoacyl synthase, N-terminal domain NIDE_RS09845 PF00668 Condensation domain NIDE_RS09845 PF16197 Ketoacyl-synthetase C-terminal extension NIDE_RS09845 PF00698 Acyl transferase domain NIDE_RS09845 PF00550 Phosphopantetheine attachment site NIDE_RS09845 PF02801 Beta-ketoacyl synthase, C-terminal domain NIDE_RS09850 PF00005 ABC transporter NIDE_RS09850 PF00664 ABC transporter transmembrane region NIDE_RS09855 PF00202 Aminotransferase class-III NIDE_RS09860 PF01804 Penicillin amidase NIDE_RS09865 PF03621 MbtH-like protein NIDE_RS09870 PF00975 Thioesterase domain NIDE_RS09875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIDE_RS09880 PF00550 Phosphopantetheine attachment site NIDE_RS09880 PF00668 Condensation domain NIDE_RS09880 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS09880 PF00501 AMP-binding enzyme NIDE_RS09885 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS09885 PF00501 AMP-binding enzyme NIDE_RS09885 PF00550 Phosphopantetheine attachment site NIDE_RS09885 PF00668 Condensation domain NIDE_RS09895 PF00668 Condensation domain NIDE_RS09895 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS09895 PF00501 AMP-binding enzyme NIDE_RS09895 PF00550 Phosphopantetheine attachment site NIDE_RS09900 PF00873 AcrB/AcrD/AcrF family NIDE_RS09920 PF02472 Biopolymer transport protein ExbD/TolR NIDE_RS09925 PF01618 MotA/TolQ/ExbB proton channel family NIDE_RS09930 PF00326 Prolyl oligopeptidase family NIDE_RS09935 PF07883 Cupin domain NIDE_RS09950 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS09950 PF00593 TonB dependent receptor NIDE_RS09975 PF00593 TonB dependent receptor NIDE_RS09975 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS09975 PF07660 Secretin and TonB N terminus short domain NIDE_RS09990 PF00593 TonB dependent receptor NIDE_RS09990 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS10025 PF02403 Seryl-tRNA synthetase N-terminal domain NIDE_RS10025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIDE_RS10030 PF04055 Radical SAM superfamily NIDE_RS10055 PF01966 HD domain NIDE_RS10070 PF00085 Thioredoxin NIDE_RS10075 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NIDE_RS10075 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NIDE_RS10080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIDE_RS10080 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NIDE_RS10095 PF01212 Beta-eliminating lyase NIDE_RS10105 PF00171 Aldehyde dehydrogenase family NIDE_RS10130 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NIDE_RS10140 PF00158 Sigma-54 interaction domain NIDE_RS10140 PF00072 Response regulator receiver domain NIDE_RS10175 PF16450 Proteasomal ATPase OB C-terminal domain NIDE_RS10175 PF17758 Proteasomal ATPase OB N-terminal domain NIDE_RS10175 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS10265 PF04055 Radical SAM superfamily NIDE_RS10265 PF06463 Molybdenum Cofactor Synthesis C NIDE_RS10290 PF14579 Helix-hairpin-helix motif NIDE_RS10290 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIDE_RS10290 PF02811 PHP domain NIDE_RS10290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIDE_RS10295 PF11799 impB/mucB/samB family C-terminal domain NIDE_RS10295 PF00817 impB/mucB/samB family NIDE_RS10300 PF01726 LexA DNA binding domain NIDE_RS10300 PF00717 Peptidase S24-like NIDE_RS10315 PF04241 Protein of unknown function (DUF423) NIDE_RS10330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NIDE_RS10330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NIDE_RS10345 PF13335 Magnesium chelatase, subunit ChlI C-terminal NIDE_RS10345 PF01078 Magnesium chelatase, subunit ChlI NIDE_RS10360 PF02861 Clp amino terminal domain, pathogenicity island component NIDE_RS10360 PF10431 C-terminal, D2-small domain, of ClpB protein NIDE_RS10360 PF17871 AAA lid domain NIDE_RS10360 PF07724 AAA domain (Cdc48 subfamily) NIDE_RS10360 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS10380 PF00158 Sigma-54 interaction domain NIDE_RS10380 PF00072 Response regulator receiver domain NIDE_RS10425 PF00158 Sigma-54 interaction domain NIDE_RS10425 PF00072 Response regulator receiver domain NIDE_RS10425 PF02954 Bacterial regulatory protein, Fis family NIDE_RS10435 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS10435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS10435 PF00989 PAS fold NIDE_RS10440 PF02954 Bacterial regulatory protein, Fis family NIDE_RS10440 PF00158 Sigma-54 interaction domain NIDE_RS10440 PF00072 Response regulator receiver domain NIDE_RS10445 PF00460 Flagella basal body rod protein NIDE_RS10450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NIDE_RS10450 PF00460 Flagella basal body rod protein NIDE_RS10455 PF02049 Flagellar hook-basal body complex protein FliE NIDE_RS10460 PF08345 Flagellar M-ring protein C-terminal NIDE_RS10460 PF01514 Secretory protein of YscJ/FliF family NIDE_RS10465 PF14841 FliG middle domain NIDE_RS10465 PF14842 FliG N-terminal domain NIDE_RS10465 PF01706 FliG C-terminal domain NIDE_RS10470 PF00158 Sigma-54 interaction domain NIDE_RS10470 PF00072 Response regulator receiver domain NIDE_RS10470 PF02954 Bacterial regulatory protein, Fis family NIDE_RS10475 PF18269 T3SS EscN ATPase C-terminal domain NIDE_RS10475 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIDE_RS10475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIDE_RS10495 PF03963 Flagellar hook capping protein - N-terminal region NIDE_RS10500 PF07559 Flagellar basal body protein FlaE NIDE_RS10500 PF00460 Flagella basal body rod protein NIDE_RS10500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NIDE_RS10515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NIDE_RS10515 PF02154 Flagellar motor switch protein FliM NIDE_RS10520 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NIDE_RS10530 PF00813 FliP family NIDE_RS10535 PF01313 Bacterial export proteins, family 3 NIDE_RS10540 PF01311 Bacterial export proteins, family 1 NIDE_RS10545 PF01312 FlhB HrpN YscU SpaS Family NIDE_RS10550 PF00771 FHIPEP family NIDE_RS10555 PF00448 SRP54-type protein, GTPase domain NIDE_RS10560 PF10609 NUBPL iron-transfer P-loop NTPase NIDE_RS10565 PF04539 Sigma-70 region 3 NIDE_RS10565 PF04545 Sigma-70, region 4 NIDE_RS10565 PF04542 Sigma-70 region 2 NIDE_RS10575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NIDE_RS10575 PF00460 Flagella basal body rod protein NIDE_RS10580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NIDE_RS10580 PF00460 Flagella basal body rod protein NIDE_RS10590 PF02107 Flagellar L-ring protein NIDE_RS10595 PF02119 Flagellar P-ring protein NIDE_RS10615 PF00460 Flagella basal body rod protein NIDE_RS10615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NIDE_RS10620 PF00700 Bacterial flagellin C-terminal helical region NIDE_RS10620 PF00669 Bacterial flagellin N-terminal helical region NIDE_RS10625 PF02599 Global regulator protein family NIDE_RS10630 PF02623 FliW protein NIDE_RS10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS10635 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS10635 PF01627 Hpt domain NIDE_RS10635 PF00072 Response regulator receiver domain NIDE_RS10635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS10635 PF00672 HAMP domain NIDE_RS10640 PF11871 Domain of unknown function (DUF3391) NIDE_RS10640 PF01966 HD domain NIDE_RS10650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS10655 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS10670 PF00155 Aminotransferase class I and II NIDE_RS10680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIDE_RS10680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS10680 PF00205 Thiamine pyrophosphate enzyme, central domain NIDE_RS10710 PF12996 DUF based on E. rectale Gene description (DUF3880) NIDE_RS10725 PF00669 Bacterial flagellin N-terminal helical region NIDE_RS10725 PF00700 Bacterial flagellin C-terminal helical region NIDE_RS10730 PF03646 FlaG protein NIDE_RS10735 PF07195 Flagellar hook-associated protein 2 C-terminus NIDE_RS10735 PF02465 Flagellar hook-associated protein 2 N-terminus NIDE_RS10755 PF10609 NUBPL iron-transfer P-loop NTPase NIDE_RS10765 PF01739 CheR methyltransferase, SAM binding domain NIDE_RS10765 PF03705 CheR methyltransferase, all-alpha domain NIDE_RS10770 PF00072 Response regulator receiver domain NIDE_RS10775 PF04344 Chemotaxis phosphatase, CheZ NIDE_RS10780 PF01584 CheW-like domain NIDE_RS10780 PF00072 Response regulator receiver domain NIDE_RS10780 PF02895 Signal transducing histidine kinase, homodimeric domain NIDE_RS10780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS10780 PF01627 Hpt domain NIDE_RS10785 PF01584 CheW-like domain NIDE_RS10785 PF00072 Response regulator receiver domain NIDE_RS10790 PF01339 CheB methylesterase NIDE_RS10790 PF00072 Response regulator receiver domain NIDE_RS10795 PF00672 HAMP domain NIDE_RS10795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIDE_RS10795 PF17200 Single Cache domain 2 NIDE_RS10800 PF01584 CheW-like domain NIDE_RS10810 PF01618 MotA/TolQ/ExbB proton channel family NIDE_RS10815 PF00691 OmpA family NIDE_RS10815 PF13677 Membrane MotB of proton-channel complex MotA/MotB NIDE_RS10825 PF00672 HAMP domain NIDE_RS10825 PF02743 Cache domain NIDE_RS10825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIDE_RS10830 PF00072 Response regulator receiver domain NIDE_RS10835 PF01584 CheW-like domain NIDE_RS10835 PF09078 CheY binding NIDE_RS10835 PF02895 Signal transducing histidine kinase, homodimeric domain NIDE_RS10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS10835 PF01627 Hpt domain NIDE_RS10840 PF01584 CheW-like domain NIDE_RS10855 PF01739 CheR methyltransferase, SAM binding domain NIDE_RS10855 PF03705 CheR methyltransferase, all-alpha domain NIDE_RS10860 PF03975 CheD chemotactic sensory transduction NIDE_RS10865 PF00072 Response regulator receiver domain NIDE_RS10865 PF01339 CheB methylesterase NIDE_RS10870 PF13466 STAS domain NIDE_RS10875 PF01740 STAS domain NIDE_RS10880 PF00072 Response regulator receiver domain NIDE_RS10880 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS10890 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS10890 PF00072 Response regulator receiver domain NIDE_RS10910 PF02350 UDP-N-acetylglucosamine 2-epimerase NIDE_RS10935 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NIDE_RS10940 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIDE_RS10980 PF00534 Glycosyl transferases group 1 NIDE_RS10995 PF06426 Serine acetyltransferase, N-terminal NIDE_RS10995 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS11025 PF02563 Polysaccharide biosynthesis/export protein NIDE_RS11025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIDE_RS11025 PF10531 SLBB domain NIDE_RS11040 PF02706 Chain length determinant protein NIDE_RS11040 PF13807 G-rich domain on putative tyrosine kinase NIDE_RS11040 PF13614 AAA domain NIDE_RS11045 PF00107 Zinc-binding dehydrogenase NIDE_RS11045 PF08240 Alcohol dehydrogenase GroES-like domain NIDE_RS11050 PF13401 AAA domain NIDE_RS11050 PF01471 Putative peptidoglycan binding domain NIDE_RS11055 PF00072 Response regulator receiver domain NIDE_RS11055 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS11070 PF02541 Ppx/GppA phosphatase family NIDE_RS11075 PF01895 PhoU domain NIDE_RS11080 PF00005 ABC transporter NIDE_RS11085 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS11090 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS11095 PF12849 PBP superfamily domain NIDE_RS11120 PF12849 PBP superfamily domain NIDE_RS11125 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS11125 PF00072 Response regulator receiver domain NIDE_RS11140 PF12849 PBP superfamily domain NIDE_RS11165 PF00072 Response regulator receiver domain NIDE_RS11165 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS11170 PF01368 DHH family NIDE_RS11170 PF00571 CBS domain NIDE_RS11170 PF02833 DHHA2 domain NIDE_RS11170 PF07085 DRTGG domain NIDE_RS11175 PF00691 OmpA family NIDE_RS11190 PF03949 Malic enzyme, NAD binding domain NIDE_RS11190 PF00390 Malic enzyme, N-terminal domain NIDE_RS11210 PF00570 HRDC domain NIDE_RS11210 PF01612 3'-5' exonuclease NIDE_RS11220 PF03960 ArsC family NIDE_RS11235 PF00285 Citrate synthase, C-terminal domain NIDE_RS11240 PF00011 Hsp20/alpha crystallin family NIDE_RS11245 PF10415 Fumarase C C-terminus NIDE_RS11245 PF00206 Lyase NIDE_RS11255 PF01513 ATP-NAD kinase NIDE_RS11260 PF02861 Clp amino terminal domain, pathogenicity island component NIDE_RS11260 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS11260 PF07724 AAA domain (Cdc48 subfamily) NIDE_RS11260 PF10431 C-terminal, D2-small domain, of ClpB protein NIDE_RS11260 PF17871 AAA lid domain NIDE_RS11265 PF00814 Glycoprotease family NIDE_RS11270 PF16360 GTP-binding GTPase Middle Region NIDE_RS11270 PF01926 50S ribosome-binding GTPase NIDE_RS11270 PF13167 GTP-binding GTPase N-terminal NIDE_RS11275 PF10576 Iron-sulfur binding domain of endonuclease III NIDE_RS11275 PF00633 Helix-hairpin-helix motif NIDE_RS11275 PF00730 HhH-GPD superfamily base excision DNA repair protein NIDE_RS11280 PF03755 YicC-like family, N-terminal region NIDE_RS11280 PF08340 Domain of unknown function (DUF1732) NIDE_RS11285 PF00625 Guanylate kinase NIDE_RS11295 PF02441 Flavoprotein NIDE_RS11295 PF04127 DNA / pantothenate metabolism flavoprotein NIDE_RS11305 PF01220 Dehydroquinase class II NIDE_RS11310 PF09285 Elongation factor P, C-terminal NIDE_RS11310 PF08207 Elongation factor P (EF-P) KOW-like domain NIDE_RS11310 PF01132 Elongation factor P (EF-P) OB domain NIDE_RS11315 PF00364 Biotin-requiring enzyme NIDE_RS11320 PF02785 Biotin carboxylase C-terminal domain NIDE_RS11320 PF00289 Biotin carboxylase, N-terminal domain NIDE_RS11320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIDE_RS11325 PF02581 Thiamine monophosphate synthase NIDE_RS11345 PF00171 Aldehyde dehydrogenase family NIDE_RS11365 PF10609 NUBPL iron-transfer P-loop NTPase NIDE_RS11370 PF00355 Rieske [2Fe-2S] domain NIDE_RS11395 PF13941 MutL protein NIDE_RS11445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIDE_RS11470 PF02384 N-6 DNA Methylase NIDE_RS11470 PF12161 HsdM N-terminal domain NIDE_RS11495 PF04002 RadC-like JAB domain NIDE_RS11525 PF07690 Major Facilitator Superfamily NIDE_RS11535 PF00557 Metallopeptidase family M24 NIDE_RS11535 PF01321 Creatinase/Prolidase N-terminal domain NIDE_RS11540 PF13085 2Fe-2S iron-sulfur cluster binding domain NIDE_RS11550 PF01139 tRNA-splicing ligase RtcB NIDE_RS11565 PF03707 Bacterial signalling protein N terminal repeat NIDE_RS11565 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS11565 PF00563 EAL domain NIDE_RS11575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIDE_RS11575 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS11590 PF02754 Cysteine-rich domain NIDE_RS11620 PF07732 Multicopper oxidase NIDE_RS11625 PF13545 Crp-like helix-turn-helix domain NIDE_RS11625 PF00027 Cyclic nucleotide-binding domain NIDE_RS11630 PF00456 Transketolase, thiamine diphosphate binding domain NIDE_RS11640 PF00156 Phosphoribosyl transferase domain NIDE_RS11645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIDE_RS11645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIDE_RS11650 PF01979 Amidohydrolase family NIDE_RS11660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIDE_RS11660 PF00117 Glutamine amidotransferase class-I NIDE_RS11665 PF01343 Peptidase family S49 NIDE_RS11675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIDE_RS11675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIDE_RS11675 PF02142 MGS-like domain NIDE_RS11680 PF01272 Transcription elongation factor, GreA/GreB, C-term NIDE_RS11680 PF03449 Transcription elongation factor, N-terminal NIDE_RS11690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS11700 PF00202 Aminotransferase class-III NIDE_RS11705 PF00009 Elongation factor Tu GTP binding domain NIDE_RS11705 PF00679 Elongation factor G C-terminus NIDE_RS11705 PF03144 Elongation factor Tu domain 2 NIDE_RS11705 PF06421 GTP-binding protein LepA C-terminus NIDE_RS11710 PF10502 Signal peptidase, peptidase S26 NIDE_RS11715 PF01467 Cytidylyltransferase-like NIDE_RS11715 PF00294 pfkB family carbohydrate kinase NIDE_RS11720 PF02348 Cytidylyltransferase NIDE_RS11725 PF00117 Glutamine amidotransferase class-I NIDE_RS11725 PF06418 CTP synthase N-terminus NIDE_RS11730 PF00793 DAHP synthetase I family NIDE_RS11735 PF01380 SIS domain NIDE_RS11735 PF00571 CBS domain NIDE_RS11740 PF01066 CDP-alcohol phosphatidyltransferase NIDE_RS11745 PF02660 Glycerol-3-phosphate acyltransferase NIDE_RS11760 PF13180 PDZ domain NIDE_RS11765 PF14492 Elongation Factor G, domain II NIDE_RS11765 PF00009 Elongation factor Tu GTP binding domain NIDE_RS11765 PF03764 Elongation factor G, domain IV NIDE_RS11765 PF00679 Elongation factor G C-terminus NIDE_RS11765 PF03144 Elongation factor Tu domain 2 NIDE_RS11770 PF04002 RadC-like JAB domain NIDE_RS11780 PF01467 Cytidylyltransferase-like NIDE_RS11785 PF00155 Aminotransferase class I and II NIDE_RS11800 PF01300 Telomere recombination NIDE_RS11805 PF02844 Phosphoribosylglycinamide synthetase, N domain NIDE_RS11805 PF02843 Phosphoribosylglycinamide synthetase, C domain NIDE_RS11805 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIDE_RS11810 PF01808 AICARFT/IMPCHase bienzyme NIDE_RS11810 PF02142 MGS-like domain NIDE_RS11815 PF05736 OprF membrane domain NIDE_RS11815 PF00691 OmpA family NIDE_RS11845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIDE_RS11845 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIDE_RS11845 PF14579 Helix-hairpin-helix motif NIDE_RS11845 PF02811 PHP domain NIDE_RS11845 PF01336 OB-fold nucleic acid binding domain NIDE_RS11850 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIDE_RS11870 PF08482 ATP-dependent helicase C-terminal NIDE_RS11870 PF00271 Helicase conserved C-terminal domain NIDE_RS11870 PF04408 Helicase associated domain (HA2) NIDE_RS11870 PF00270 DEAD/DEAH box helicase NIDE_RS11880 PF01327 Polypeptide deformylase NIDE_RS11890 PF01593 Flavin containing amine oxidoreductase NIDE_RS11905 PF00849 RNA pseudouridylate synthase NIDE_RS11905 PF01479 S4 domain NIDE_RS11920 PF08386 TAP-like protein NIDE_RS11920 PF00561 alpha/beta hydrolase fold NIDE_RS11960 PF02322 Cytochrome bd terminal oxidase subunit II NIDE_RS11965 PF01654 Cytochrome bd terminal oxidase subunit I NIDE_RS11970 PF01066 CDP-alcohol phosphatidyltransferase NIDE_RS11980 PF13167 GTP-binding GTPase N-terminal NIDE_RS11980 PF16360 GTP-binding GTPase Middle Region NIDE_RS11980 PF01926 50S ribosome-binding GTPase NIDE_RS11995 PF06803 Protein of unknown function (DUF1232) NIDE_RS12015 PF00271 Helicase conserved C-terminal domain NIDE_RS12015 PF04851 Type III restriction enzyme, res subunit NIDE_RS12015 PF08463 EcoEI R protein C-terminal NIDE_RS12015 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NIDE_RS12035 PF12161 HsdM N-terminal domain NIDE_RS12035 PF02384 N-6 DNA Methylase NIDE_RS12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS12050 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS12095 PF01565 FAD binding domain NIDE_RS12095 PF02913 FAD linked oxidases, C-terminal domain NIDE_RS12100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIDE_RS12100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIDE_RS12110 PF00313 'Cold-shock' DNA-binding domain NIDE_RS12125 PF02801 Beta-ketoacyl synthase, C-terminal domain NIDE_RS12125 PF00109 Beta-ketoacyl synthase, N-terminal domain NIDE_RS12130 PF00550 Phosphopantetheine attachment site NIDE_RS12135 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS12135 PF14602 Hexapeptide repeat of succinyl-transferase NIDE_RS12135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIDE_RS12170 PF07194 P2 response regulator binding domain NIDE_RS12170 PF01627 Hpt domain NIDE_RS12170 PF02895 Signal transducing histidine kinase, homodimeric domain NIDE_RS12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS12170 PF01584 CheW-like domain NIDE_RS12180 PF01584 CheW-like domain NIDE_RS12185 PF00072 Response regulator receiver domain NIDE_RS12195 PF07685 CobB/CobQ-like glutamine amidotransferase domain NIDE_RS12205 PF00155 Aminotransferase class I and II NIDE_RS12210 PF03186 CobD/Cbib protein NIDE_RS12215 PF02654 Cobalamin-5-phosphate synthase NIDE_RS12220 PF02277 Phosphoribosyltransferase NIDE_RS12225 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIDE_RS12230 PF01923 Cobalamin adenosyltransferase NIDE_RS12235 PF00881 Nitroreductase family NIDE_RS12240 PF12557 Cob(I)alamin adenosyltransferase N terminal NIDE_RS12240 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NIDE_RS12245 PF07685 CobB/CobQ-like glutamine amidotransferase domain NIDE_RS12245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS12250 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS12250 PF00593 TonB dependent receptor NIDE_RS12255 PF00005 ABC transporter NIDE_RS12260 PF01032 FecCD transport family NIDE_RS12265 PF01497 Periplasmic binding protein NIDE_RS12275 PF00830 Ribosomal L28 family NIDE_RS12285 PF02563 Polysaccharide biosynthesis/export protein NIDE_RS12285 PF10531 SLBB domain NIDE_RS12290 PF10531 SLBB domain NIDE_RS12290 PF02563 Polysaccharide biosynthesis/export protein NIDE_RS12300 PF02719 Polysaccharide biosynthesis protein NIDE_RS12310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS12315 PF00258 Flavodoxin NIDE_RS12315 PF01613 Flavin reductase like domain NIDE_RS12335 PF08241 Methyltransferase domain NIDE_RS12345 PF00668 Condensation domain NIDE_RS12345 PF00550 Phosphopantetheine attachment site NIDE_RS12345 PF00975 Thioesterase domain NIDE_RS12345 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS12345 PF00501 AMP-binding enzyme NIDE_RS12350 PF00296 Luciferase-like monooxygenase NIDE_RS12355 PF02397 Bacterial sugar transferase NIDE_RS12370 PF13477 Glycosyl transferase 4-like NIDE_RS12370 PF00534 Glycosyl transferases group 1 NIDE_RS12380 PF13537 Glutamine amidotransferase domain NIDE_RS12380 PF00733 Asparagine synthase NIDE_RS12385 PF08323 Starch synthase catalytic domain NIDE_RS12385 PF00534 Glycosyl transferases group 1 NIDE_RS12395 PF13439 Glycosyltransferase Family 4 NIDE_RS12395 PF00534 Glycosyl transferases group 1 NIDE_RS12415 PF01757 Acyltransferase family NIDE_RS12420 PF03023 Lipid II flippase MurJ NIDE_RS12425 PF13614 AAA domain NIDE_RS12455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS12470 PF07517 SecA DEAD-like domain NIDE_RS12470 PF01043 SecA preprotein cross-linking domain NIDE_RS12490 PF01479 S4 domain NIDE_RS12490 PF00579 tRNA synthetases class I (W and Y) NIDE_RS12500 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS12500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIDE_RS12505 PF01597 Glycine cleavage H-protein NIDE_RS12515 PF00334 Nucleoside diphosphate kinase NIDE_RS12520 PF01008 Initiation factor 2 subunit family NIDE_RS12525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS12535 PF03772 Competence protein NIDE_RS12535 PF00753 Metallo-beta-lactamase superfamily NIDE_RS12535 PF13567 Domain of unknown function (DUF4131) NIDE_RS12540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIDE_RS12540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIDE_RS12540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIDE_RS12540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIDE_RS12545 PF00809 Pterin binding enzyme NIDE_RS12550 PF01434 Peptidase family M41 NIDE_RS12550 PF06480 FtsH Extracellular NIDE_RS12550 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS12550 PF17862 AAA+ lid domain NIDE_RS12555 PF00156 Phosphoribosyl transferase domain NIDE_RS12570 PF06574 FAD synthetase NIDE_RS12570 PF01687 Riboflavin kinase NIDE_RS12575 PF00490 Delta-aminolevulinic acid dehydratase NIDE_RS12585 PF02602 Uroporphyrinogen-III synthase HemD NIDE_RS12585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS12590 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIDE_RS12590 PF03900 Porphobilinogen deaminase, C-terminal domain NIDE_RS12595 PF01488 Shikimate / quinate 5-dehydrogenase NIDE_RS12595 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIDE_RS12595 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIDE_RS12600 PF01578 Cytochrome C assembly protein NIDE_RS12605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS12640 PF00572 Ribosomal protein L13 NIDE_RS12645 PF00380 Ribosomal protein S9/S16 NIDE_RS12650 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIDE_RS12650 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIDE_RS12655 PF01960 ArgJ family NIDE_RS12660 PF00318 Ribosomal protein S2 NIDE_RS12665 PF00889 Elongation factor TS NIDE_RS12670 PF00696 Amino acid kinase family NIDE_RS12675 PF01765 Ribosome recycling factor NIDE_RS12680 PF01168 Alanine racemase, N-terminal domain NIDE_RS12680 PF00842 Alanine racemase, C-terminal domain NIDE_RS12695 PF14824 Sirohaem biosynthesis protein central NIDE_RS12695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS12695 PF10414 Sirohaem synthase dimerisation region NIDE_RS12710 PF00355 Rieske [2Fe-2S] domain NIDE_RS12730 PF00994 Probable molybdopterin binding domain NIDE_RS12735 PF00571 CBS domain NIDE_RS12740 PF08240 Alcohol dehydrogenase GroES-like domain NIDE_RS12740 PF00107 Zinc-binding dehydrogenase NIDE_RS12745 PF02567 Phenazine biosynthesis-like protein NIDE_RS12765 PF01938 TRAM domain NIDE_RS12765 PF00919 Uncharacterized protein family UPF0004 NIDE_RS12765 PF04055 Radical SAM superfamily NIDE_RS12780 PF13289 SIR2-like domain NIDE_RS12810 PF00891 O-methyltransferase domain NIDE_RS12820 PF02627 Carboxymuconolactone decarboxylase family NIDE_RS12825 PF08241 Methyltransferase domain NIDE_RS12830 PF12833 Helix-turn-helix domain NIDE_RS12835 PF06719 AraC-type transcriptional regulator N-terminus NIDE_RS12835 PF12833 Helix-turn-helix domain NIDE_RS12845 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS12845 PF00101 Ribulose bisphosphate carboxylase, small chain NIDE_RS12860 PF03466 LysR substrate binding domain NIDE_RS12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIDE_RS12865 PF05724 Thiopurine S-methyltransferase (TPMT) NIDE_RS12870 PF07690 Major Facilitator Superfamily NIDE_RS12875 PF00391 PEP-utilising enzyme, mobile domain NIDE_RS12875 PF02887 Pyruvate kinase, alpha/beta domain NIDE_RS12875 PF00224 Pyruvate kinase, barrel domain NIDE_RS12880 PF08281 Sigma-70, region 4 NIDE_RS12880 PF04542 Sigma-70 region 2 NIDE_RS12885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIDE_RS12890 PF01872 RibD C-terminal domain NIDE_RS12905 PF04134 Protein of unknown function, DUF393 NIDE_RS12910 PF00581 Rhodanese-like domain NIDE_RS12925 PF08334 Type II secretion system (T2SS), protein G NIDE_RS12925 PF07963 Prokaryotic N-terminal methylation motif NIDE_RS12935 PF00171 Aldehyde dehydrogenase family NIDE_RS12965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIDE_RS12965 PF00437 Type II/IV secretion system protein NIDE_RS12970 PF00482 Type II secretion system (T2SS), protein F NIDE_RS12975 PF01476 LysM domain NIDE_RS12975 PF00877 NlpC/P60 family NIDE_RS12980 PF08334 Type II secretion system (T2SS), protein G NIDE_RS12980 PF07963 Prokaryotic N-terminal methylation motif NIDE_RS12990 PF03958 Bacterial type II/III secretion system short domain NIDE_RS12990 PF00263 Bacterial type II and III secretion system protein NIDE_RS12995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIDE_RS12995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIDE_RS12995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIDE_RS13015 PF01695 IstB-like ATP binding protein NIDE_RS13020 PF02796 Helix-turn-helix domain of resolvase NIDE_RS13020 PF00665 Integrase core domain NIDE_RS13065 PF13439 Glycosyltransferase Family 4 NIDE_RS13065 PF00534 Glycosyl transferases group 1 NIDE_RS13070 PF00534 Glycosyl transferases group 1 NIDE_RS13070 PF13439 Glycosyltransferase Family 4 NIDE_RS13095 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIDE_RS13105 PF01522 Polysaccharide deacetylase NIDE_RS13120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS13135 PF00733 Asparagine synthase NIDE_RS13135 PF13537 Glutamine amidotransferase domain NIDE_RS13140 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS13145 PF02543 Carbamoyltransferase N-terminus NIDE_RS13145 PF16861 Carbamoyltransferase C-terminus NIDE_RS13155 PF00535 Glycosyl transferase family 2 NIDE_RS13165 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS13195 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS13205 PF09940 Domain of unknown function (DUF2172) NIDE_RS13205 PF16221 winged helix-turn-helix NIDE_RS13205 PF16254 Domain of unknown function (DUF4910) NIDE_RS13210 PF08484 C-methyltransferase C-terminal domain NIDE_RS13210 PF08421 Putative zinc binding domain NIDE_RS13215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIDE_RS13215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIDE_RS13215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIDE_RS13225 PF00483 Nucleotidyl transferase NIDE_RS13230 PF00005 ABC transporter NIDE_RS13230 PF14524 Wzt C-terminal domain NIDE_RS13235 PF01061 ABC-2 type transporter NIDE_RS13240 PF01522 Polysaccharide deacetylase NIDE_RS13245 PF02397 Bacterial sugar transferase NIDE_RS13250 PF13614 AAA domain NIDE_RS13275 PF00072 Response regulator receiver domain NIDE_RS13275 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS13280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS13280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIDE_RS13295 PF00534 Glycosyl transferases group 1 NIDE_RS13295 PF08323 Starch synthase catalytic domain NIDE_RS13310 PF02565 Recombination protein O C terminal NIDE_RS13310 PF11967 Recombination protein O N terminal NIDE_RS13315 PF03448 MgtE intracellular N domain NIDE_RS13315 PF00571 CBS domain NIDE_RS13315 PF01769 Divalent cation transporter NIDE_RS13320 PF07650 KH domain NIDE_RS13320 PF01926 50S ribosome-binding GTPase NIDE_RS13330 PF00113 Enolase, C-terminal TIM barrel domain NIDE_RS13330 PF03952 Enolase, N-terminal domain NIDE_RS13340 PF02934 GatB/GatE catalytic domain NIDE_RS13340 PF02637 GatB domain NIDE_RS13355 PF01425 Amidase NIDE_RS13360 PF02261 Aspartate decarboxylase NIDE_RS13365 PF02686 Glu-tRNAGln amidotransferase C subunit NIDE_RS13370 PF01380 SIS domain NIDE_RS13375 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS13375 PF12804 MobA-like NTP transferase domain NIDE_RS13385 PF02223 Thymidylate kinase NIDE_RS13395 PF08264 Anticodon-binding domain of tRNA NIDE_RS13395 PF09334 tRNA synthetases class I (M) NIDE_RS13395 PF01588 Putative tRNA binding domain NIDE_RS13405 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS13405 PF17862 AAA+ lid domain NIDE_RS13405 PF01434 Peptidase family M41 NIDE_RS13405 PF06480 FtsH Extracellular NIDE_RS13410 PF01545 Cation efflux family NIDE_RS13410 PF16916 Dimerisation domain of Zinc Transporter NIDE_RS13420 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIDE_RS13420 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIDE_RS13545 PF02661 Fic/DOC family NIDE_RS13545 PF13784 Fic/DOC family N-terminal NIDE_RS13555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS13555 PF00529 HlyD membrane-fusion protein of T1SS NIDE_RS13560 PF00873 AcrB/AcrD/AcrF family NIDE_RS13580 PF00793 DAHP synthetase I family NIDE_RS13585 PF01026 TatD related DNase NIDE_RS13595 PF01520 N-acetylmuramoyl-L-alanine amidase NIDE_RS13595 PF04122 Putative cell wall binding repeat 2 NIDE_RS13600 PF01416 tRNA pseudouridine synthase NIDE_RS13610 PF06426 Serine acetyltransferase, N-terminal NIDE_RS13610 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS13615 PF02542 YgbB family NIDE_RS13620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIDE_RS13630 PF13180 PDZ domain NIDE_RS13635 PF01791 DeoC/LacD family aldolase NIDE_RS13640 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIDE_RS13650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIDE_RS13650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIDE_RS13650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIDE_RS13650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIDE_RS13655 PF00483 Nucleotidyl transferase NIDE_RS13655 PF01050 Mannose-6-phosphate isomerase NIDE_RS13665 PF02397 Bacterial sugar transferase NIDE_RS13670 PF00534 Glycosyl transferases group 1 NIDE_RS13670 PF13439 Glycosyltransferase Family 4 NIDE_RS13675 PF00534 Glycosyl transferases group 1 NIDE_RS13675 PF13439 Glycosyltransferase Family 4 NIDE_RS13685 PF08241 Methyltransferase domain NIDE_RS13700 PF00534 Glycosyl transferases group 1 NIDE_RS13700 PF13579 Glycosyl transferase 4-like domain NIDE_RS13710 PF00733 Asparagine synthase NIDE_RS13710 PF13537 Glutamine amidotransferase domain NIDE_RS13720 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS13720 PF00551 Formyl transferase NIDE_RS13720 PF02911 Formyl transferase, C-terminal domain NIDE_RS13725 PF02350 UDP-N-acetylglucosamine 2-epimerase NIDE_RS13730 PF03102 NeuB family NIDE_RS13730 PF08666 SAF domain NIDE_RS13735 PF02348 Cytidylyltransferase NIDE_RS13760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NIDE_RS13760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NIDE_RS13775 PF01747 ATP-sulfurylase NIDE_RS13775 PF14306 PUA-like domain NIDE_RS13785 PF00733 Asparagine synthase NIDE_RS13785 PF13537 Glutamine amidotransferase domain NIDE_RS13790 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS13795 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS13805 PF04321 RmlD substrate binding domain NIDE_RS13810 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS13815 PF00483 Nucleotidyl transferase NIDE_RS13820 PF01266 FAD dependent oxidoreductase NIDE_RS13845 PF00535 Glycosyl transferase family 2 NIDE_RS13860 PF00535 Glycosyl transferase family 2 NIDE_RS13865 PF00535 Glycosyl transferase family 2 NIDE_RS13875 PF13439 Glycosyltransferase Family 4 NIDE_RS13875 PF00534 Glycosyl transferases group 1 NIDE_RS13880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NIDE_RS13890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIDE_RS13895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIDE_RS13895 PF00534 Glycosyl transferases group 1 NIDE_RS13900 PF04028 Domain of unknown function (DUF374) NIDE_RS13905 PF00005 ABC transporter NIDE_RS13905 PF00664 ABC transporter transmembrane region NIDE_RS13910 PF02684 Lipid-A-disaccharide synthetase NIDE_RS13915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NIDE_RS13915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NIDE_RS13925 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS13925 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIDE_RS13930 PF07977 FabA-like domain NIDE_RS13945 PF07244 Surface antigen variable number repeat NIDE_RS13945 PF01103 Surface antigen NIDE_RS13950 PF00483 Nucleotidyl transferase NIDE_RS13955 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIDE_RS13955 PF05362 Lon protease (S16) C-terminal proteolytic domain NIDE_RS13955 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS13960 PF00586 AIR synthase related protein, N-terminal domain NIDE_RS13960 PF02769 AIR synthase related protein, C-terminal domain NIDE_RS13975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS13980 PF00072 Response regulator receiver domain NIDE_RS13995 PF03136 Pup-ligase protein NIDE_RS14000 PF00227 Proteasome subunit NIDE_RS14005 PF00227 Proteasome subunit NIDE_RS14010 PF03136 Pup-ligase protein NIDE_RS14015 PF16450 Proteasomal ATPase OB C-terminal domain NIDE_RS14015 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS14015 PF17758 Proteasomal ATPase OB N-terminal domain NIDE_RS14020 PF02581 Thiamine monophosphate synthase NIDE_RS14025 PF05690 Thiazole biosynthesis protein ThiG NIDE_RS14030 PF02597 ThiS family NIDE_RS14030 PF05690 Thiazole biosynthesis protein ThiG NIDE_RS14040 PF13180 PDZ domain NIDE_RS14040 PF03572 Peptidase family S41 NIDE_RS14050 PF02687 FtsX-like permease family NIDE_RS14050 PF18075 FtsX extracellular domain NIDE_RS14055 PF00005 ABC transporter NIDE_RS14060 PF02021 Uncharacterised protein family UPF0102 NIDE_RS14065 PF01351 Ribonuclease HII NIDE_RS14070 PF01245 Ribosomal protein L19 NIDE_RS14075 PF01746 tRNA (Guanine-1)-methyltransferase NIDE_RS14080 PF05239 PRC-barrel domain NIDE_RS14080 PF01782 RimM N-terminal domain NIDE_RS14085 PF00886 Ribosomal protein S16 NIDE_RS14090 PF02978 Signal peptide binding domain NIDE_RS14090 PF00448 SRP54-type protein, GTPase domain NIDE_RS14090 PF02881 SRP54-type protein, helical bundle domain NIDE_RS14100 PF02151 UvrB/uvrC motif NIDE_RS14100 PF17757 UvrB interaction domain NIDE_RS14100 PF12344 Ultra-violet resistance protein B NIDE_RS14100 PF00271 Helicase conserved C-terminal domain NIDE_RS14100 PF04851 Type III restriction enzyme, res subunit NIDE_RS14110 PF00994 Probable molybdopterin binding domain NIDE_RS14110 PF02464 Competence-damaged protein NIDE_RS14110 PF18146 Damage-inducible protein CinA KH domain NIDE_RS14120 PF06778 Chlorite dismutase NIDE_RS14120 PF00762 Ferrochelatase NIDE_RS14145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIDE_RS14150 PF05951 Bacterial protein of unknown function (DUF882) NIDE_RS14155 PF02954 Bacterial regulatory protein, Fis family NIDE_RS14155 PF00158 Sigma-54 interaction domain NIDE_RS14155 PF00072 Response regulator receiver domain NIDE_RS14165 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS14165 PF00072 Response regulator receiver domain NIDE_RS14175 PF00293 NUDIX domain NIDE_RS14180 PF00106 short chain dehydrogenase NIDE_RS14200 PF08479 POTRA domain, ShlB-type NIDE_RS14200 PF17287 POTRA domain NIDE_RS14200 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIDE_RS14210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIDE_RS14210 PF02770 Acyl-CoA dehydrogenase, middle domain NIDE_RS14210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIDE_RS14220 PF00378 Enoyl-CoA hydratase/isomerase NIDE_RS14225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIDE_RS14225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIDE_RS14225 PF00378 Enoyl-CoA hydratase/isomerase NIDE_RS14230 PF00108 Thiolase, N-terminal domain NIDE_RS14230 PF02803 Thiolase, C-terminal domain NIDE_RS14235 PF00501 AMP-binding enzyme NIDE_RS14235 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS14245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIDE_RS14250 PF04209 homogentisate 1,2-dioxygenase NIDE_RS14255 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIDE_RS14265 PF00676 Dehydrogenase E1 component NIDE_RS14270 PF02780 Transketolase, C-terminal domain NIDE_RS14270 PF02779 Transketolase, pyrimidine binding domain NIDE_RS14275 PF02817 e3 binding domain NIDE_RS14275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIDE_RS14275 PF00364 Biotin-requiring enzyme NIDE_RS14280 PF00108 Thiolase, N-terminal domain NIDE_RS14280 PF02803 Thiolase, C-terminal domain NIDE_RS14285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIDE_RS14285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIDE_RS14290 PF01642 Methylmalonyl-CoA mutase NIDE_RS14290 PF02310 B12 binding domain NIDE_RS14295 PF00753 Metallo-beta-lactamase superfamily NIDE_RS14300 PF02310 B12 binding domain NIDE_RS14305 PF01039 Carboxyl transferase domain NIDE_RS14310 PF00378 Enoyl-CoA hydratase/isomerase NIDE_RS14315 PF00682 HMGL-like NIDE_RS14325 PF03972 MmgE/PrpD family NIDE_RS14335 PF00285 Citrate synthase, C-terminal domain NIDE_RS14340 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS14340 PF00501 AMP-binding enzyme NIDE_RS14345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIDE_RS14345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIDE_RS14345 PF02770 Acyl-CoA dehydrogenase, middle domain NIDE_RS14350 PF00924 Mechanosensitive ion channel NIDE_RS14400 PF00717 Peptidase S24-like NIDE_RS14400 PF01726 LexA DNA binding domain NIDE_RS14410 PF05818 Enterobacterial TraT complement resistance protein NIDE_RS14415 PF08402 TOBE domain NIDE_RS14415 PF00005 ABC transporter NIDE_RS14420 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIDE_RS14425 PF03459 TOBE domain NIDE_RS14455 PF12728 Helix-turn-helix domain NIDE_RS14455 PF12727 PBP superfamily domain NIDE_RS14490 PF02954 Bacterial regulatory protein, Fis family NIDE_RS14490 PF00072 Response regulator receiver domain NIDE_RS14490 PF00158 Sigma-54 interaction domain NIDE_RS14500 PF17674 HHH domain NIDE_RS14500 PF00575 S1 RNA binding domain NIDE_RS14500 PF09371 Tex-like protein N-terminal domain NIDE_RS14500 PF16921 Tex protein YqgF-like domain NIDE_RS14505 PF02705 K+ potassium transporter NIDE_RS14510 PF00588 SpoU rRNA Methylase family NIDE_RS14520 PF01926 50S ribosome-binding GTPase NIDE_RS14520 PF06071 Protein of unknown function (DUF933) NIDE_RS14525 PF00101 Ribulose bisphosphate carboxylase, small chain NIDE_RS14525 PF00132 Bacterial transferase hexapeptide (six repeats) NIDE_RS14545 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS14555 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS14555 PF17862 AAA+ lid domain NIDE_RS14555 PF06480 FtsH Extracellular NIDE_RS14555 PF01434 Peptidase family M41 NIDE_RS14565 PF01263 Aldose 1-epimerase NIDE_RS14570 PF00365 Phosphofructokinase NIDE_RS14575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIDE_RS14580 PF00270 DEAD/DEAH box helicase NIDE_RS14580 PF00271 Helicase conserved C-terminal domain NIDE_RS14605 PF04389 Peptidase family M28 NIDE_RS14605 PF02225 PA domain NIDE_RS14615 PF07690 Major Facilitator Superfamily NIDE_RS14625 PF07690 Major Facilitator Superfamily NIDE_RS14630 PF00534 Glycosyl transferases group 1 NIDE_RS14630 PF13439 Glycosyltransferase Family 4 NIDE_RS14650 PF12706 Beta-lactamase superfamily domain NIDE_RS14660 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NIDE_RS14665 PF11455 Protein of unknown function (DUF3018) NIDE_RS14700 PF00797 N-acetyltransferase NIDE_RS14705 PF00005 ABC transporter NIDE_RS14705 PF17755 UvrA DNA-binding domain NIDE_RS14705 PF17760 UvrA interaction domain NIDE_RS14710 PF02622 Uncharacterized ACR, COG1678 NIDE_RS14715 PF00795 Carbon-nitrogen hydrolase NIDE_RS14725 PF00581 Rhodanese-like domain NIDE_RS14735 PF00850 Histone deacetylase domain NIDE_RS14760 PF00072 Response regulator receiver domain NIDE_RS14760 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS14785 PF13247 4Fe-4S dicluster domain NIDE_RS14790 PF00384 Molybdopterin oxidoreductase NIDE_RS14790 PF01568 Molydopterin dinucleotide binding domain NIDE_RS14795 PF00158 Sigma-54 interaction domain NIDE_RS14795 PF01590 GAF domain NIDE_RS14800 PF00529 HlyD membrane-fusion protein of T1SS NIDE_RS14800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS14805 PF02321 Outer membrane efflux protein NIDE_RS14810 PF07690 Major Facilitator Superfamily NIDE_RS14815 PF01226 Formate/nitrite transporter NIDE_RS14825 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS14825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS14830 PF00072 Response regulator receiver domain NIDE_RS14830 PF00158 Sigma-54 interaction domain NIDE_RS14830 PF02954 Bacterial regulatory protein, Fis family NIDE_RS14835 PF17200 Single Cache domain 2 NIDE_RS14835 PF07730 Histidine kinase NIDE_RS14840 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS14840 PF00072 Response regulator receiver domain NIDE_RS14845 PF02321 Outer membrane efflux protein NIDE_RS14850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS14855 PF00873 AcrB/AcrD/AcrF family NIDE_RS14860 PF00893 Small Multidrug Resistance protein NIDE_RS14865 PF01699 Sodium/calcium exchanger protein NIDE_RS14870 PF02954 Bacterial regulatory protein, Fis family NIDE_RS14870 PF00158 Sigma-54 interaction domain NIDE_RS14870 PF00072 Response regulator receiver domain NIDE_RS14875 PF00384 Molybdopterin oxidoreductase NIDE_RS14875 PF01568 Molydopterin dinucleotide binding domain NIDE_RS14880 PF13247 4Fe-4S dicluster domain NIDE_RS14885 PF03358 NADPH-dependent FMN reductase NIDE_RS14900 PF00027 Cyclic nucleotide-binding domain NIDE_RS14900 PF07885 Ion channel NIDE_RS14905 PF13291 ACT domain NIDE_RS14905 PF04607 Region found in RelA / SpoT proteins NIDE_RS14905 PF02824 TGS domain NIDE_RS14910 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NIDE_RS14910 PF17768 RecJ OB domain NIDE_RS14910 PF02272 DHHA1 domain NIDE_RS14910 PF01368 DHH family NIDE_RS14920 PF03030 Inorganic H+ pyrophosphatase NIDE_RS14955 PF02416 mttA/Hcf106 family NIDE_RS14970 PF00919 Uncharacterized protein family UPF0004 NIDE_RS14970 PF04055 Radical SAM superfamily NIDE_RS15000 PF00158 Sigma-54 interaction domain NIDE_RS15000 PF00072 Response regulator receiver domain NIDE_RS15000 PF02954 Bacterial regulatory protein, Fis family NIDE_RS15005 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS15005 PF00989 PAS fold NIDE_RS15005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS15010 PF02355 Protein export membrane protein NIDE_RS15010 PF07549 SecD/SecF GG Motif NIDE_RS15015 PF07549 SecD/SecF GG Motif NIDE_RS15015 PF02355 Protein export membrane protein NIDE_RS15020 PF02699 Preprotein translocase subunit NIDE_RS15025 PF01702 Queuine tRNA-ribosyltransferase NIDE_RS15030 PF03485 Arginyl tRNA synthetase N terminal domain NIDE_RS15030 PF05746 DALR anticodon binding domain NIDE_RS15030 PF00750 tRNA synthetases class I (R) NIDE_RS15040 PF12804 MobA-like NTP transferase domain NIDE_RS15065 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS15070 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS15105 PF00891 O-methyltransferase domain NIDE_RS15105 PF16864 Dimerisation domain NIDE_RS15140 PF13520 Amino acid permease NIDE_RS15160 PF05670 NFACT protein RNA binding domain NIDE_RS15175 PF02687 FtsX-like permease family NIDE_RS15180 PF02687 FtsX-like permease family NIDE_RS15180 PF00005 ABC transporter NIDE_RS15180 PF12704 MacB-like periplasmic core domain NIDE_RS15185 PF00364 Biotin-requiring enzyme NIDE_RS15185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIDE_RS15185 PF02817 e3 binding domain NIDE_RS15190 PF02321 Outer membrane efflux protein NIDE_RS15220 PF00106 short chain dehydrogenase NIDE_RS15230 PF14524 Wzt C-terminal domain NIDE_RS15230 PF00005 ABC transporter NIDE_RS15255 PF00005 ABC transporter NIDE_RS15265 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NIDE_RS15270 PF03453 MoeA N-terminal region (domain I and II) NIDE_RS15270 PF03454 MoeA C-terminal region (domain IV) NIDE_RS15270 PF00994 Probable molybdopterin binding domain NIDE_RS15275 PF10609 NUBPL iron-transfer P-loop NTPase NIDE_RS15280 PF00902 Sec-independent protein translocase protein (TatC) NIDE_RS15285 PF13180 PDZ domain NIDE_RS15285 PF17820 PDZ domain NIDE_RS15295 PF00535 Glycosyl transferase family 2 NIDE_RS15305 PF02543 Carbamoyltransferase N-terminus NIDE_RS15305 PF16861 Carbamoyltransferase C-terminus NIDE_RS15335 PF01048 Phosphorylase superfamily NIDE_RS15345 PF08676 MutL C terminal dimerisation domain NIDE_RS15345 PF01119 DNA mismatch repair protein, C-terminal domain NIDE_RS15365 PF07676 WD40-like Beta Propeller Repeat NIDE_RS15365 PF04052 TolB amino-terminal domain NIDE_RS15375 PF02472 Biopolymer transport protein ExbD/TolR NIDE_RS15380 PF01618 MotA/TolQ/ExbB proton channel family NIDE_RS15395 PF02899 Phage integrase, N-terminal SAM-like domain NIDE_RS15395 PF00589 Phage integrase family NIDE_RS15405 PF00579 tRNA synthetases class I (W and Y) NIDE_RS15420 PF00753 Metallo-beta-lactamase superfamily NIDE_RS15435 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS15470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIDE_RS15470 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS15475 PF00310 Glutamine amidotransferases class-II NIDE_RS15475 PF04898 Glutamate synthase central domain NIDE_RS15475 PF01645 Conserved region in glutamate synthase NIDE_RS15475 PF01493 GXGXG motif NIDE_RS15480 PF00348 Polyprenyl synthetase NIDE_RS15490 PF02954 Bacterial regulatory protein, Fis family NIDE_RS15490 PF00072 Response regulator receiver domain NIDE_RS15490 PF00158 Sigma-54 interaction domain NIDE_RS15495 PF00483 Nucleotidyl transferase NIDE_RS15500 PF01636 Phosphotransferase enzyme family NIDE_RS15505 PF00248 Aldo/keto reductase family NIDE_RS15530 PF01171 PP-loop family NIDE_RS15540 PF01547 Bacterial extracellular solute-binding protein NIDE_RS15545 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS15550 PF00528 Binding-protein-dependent transport system inner membrane component NIDE_RS15555 PF17912 MalK OB fold domain NIDE_RS15555 PF00005 ABC transporter NIDE_RS15560 PF00684 DnaJ central domain NIDE_RS15560 PF00226 DnaJ domain NIDE_RS15560 PF01556 DnaJ C terminal domain NIDE_RS15565 PF01914 MarC family integral membrane protein NIDE_RS15580 PF00920 Dehydratase family NIDE_RS15590 PF13089 Polyphosphate kinase N-terminal domain NIDE_RS15590 PF17941 Polyphosphate kinase C-terminal domain 1 NIDE_RS15590 PF13090 Polyphosphate kinase C-terminal domain 2 NIDE_RS15590 PF02503 Polyphosphate kinase middle domain NIDE_RS15615 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS15620 PF00072 Response regulator receiver domain NIDE_RS15620 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS15625 PF08448 PAS fold NIDE_RS15625 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS15625 PF00563 EAL domain NIDE_RS15625 PF08447 PAS fold NIDE_RS15630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIDE_RS15640 PF01593 Flavin containing amine oxidoreductase NIDE_RS15645 PF00953 Glycosyl transferase family 4 NIDE_RS15650 PF13439 Glycosyltransferase Family 4 NIDE_RS15650 PF00534 Glycosyl transferases group 1 NIDE_RS15655 PF00535 Glycosyl transferase family 2 NIDE_RS15655 PF00534 Glycosyl transferases group 1 NIDE_RS15660 PF00483 Nucleotidyl transferase NIDE_RS15665 PF08544 GHMP kinases C terminal NIDE_RS15665 PF00288 GHMP kinases N terminal domain NIDE_RS15670 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS15700 PF00005 ABC transporter NIDE_RS15715 PF00005 ABC transporter NIDE_RS15745 PF03796 DnaB-like helicase C terminal domain NIDE_RS15745 PF00772 DnaB-like helicase N terminal domain NIDE_RS15750 PF13393 Histidyl-tRNA synthetase NIDE_RS15755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIDE_RS15755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIDE_RS15755 PF01842 ACT domain NIDE_RS15760 PF00266 Aminotransferase class-V NIDE_RS15765 PF01464 Transglycosylase SLT domain NIDE_RS15765 PF01476 LysM domain NIDE_RS15775 PF00155 Aminotransferase class I and II NIDE_RS15780 PF00437 Type II/IV secretion system protein NIDE_RS15785 PF00437 Type II/IV secretion system protein NIDE_RS15795 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS15805 PF00722 Glycosyl hydrolases family 16 NIDE_RS15805 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) NIDE_RS15820 PF03412 Peptidase C39 family NIDE_RS15820 PF00005 ABC transporter NIDE_RS15820 PF00664 ABC transporter transmembrane region NIDE_RS15835 PF08212 Lipocalin-like domain NIDE_RS15840 PF00072 Response regulator receiver domain NIDE_RS15840 PF00158 Sigma-54 interaction domain NIDE_RS15840 PF02954 Bacterial regulatory protein, Fis family NIDE_RS15855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NIDE_RS15855 PF00128 Alpha amylase, catalytic domain NIDE_RS15855 PF02806 Alpha amylase, C-terminal all-beta domain NIDE_RS15890 PF02321 Outer membrane efflux protein NIDE_RS15895 PF00873 AcrB/AcrD/AcrF family NIDE_RS15900 PF00529 HlyD membrane-fusion protein of T1SS NIDE_RS15900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS15915 PF03795 YCII-related domain NIDE_RS15930 PF00404 Dockerin type I domain NIDE_RS15935 PF03795 YCII-related domain NIDE_RS15940 PF03795 YCII-related domain NIDE_RS15955 PF08281 Sigma-70, region 4 NIDE_RS15955 PF04542 Sigma-70 region 2 NIDE_RS15960 PF01883 Iron-sulfur cluster assembly protein NIDE_RS15975 PF02321 Outer membrane efflux protein NIDE_RS15985 PF00873 AcrB/AcrD/AcrF family NIDE_RS15990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS16010 PF01590 GAF domain NIDE_RS16010 PF02954 Bacterial regulatory protein, Fis family NIDE_RS16010 PF00158 Sigma-54 interaction domain NIDE_RS16020 PF04011 LemA family NIDE_RS16050 PF13302 Acetyltransferase (GNAT) domain NIDE_RS16070 PF07732 Multicopper oxidase NIDE_RS16070 PF07731 Multicopper oxidase NIDE_RS16075 PF03150 Di-haem cytochrome c peroxidase NIDE_RS16080 PF00248 Aldo/keto reductase family NIDE_RS16090 PF09363 XFP C-terminal domain NIDE_RS16090 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase NIDE_RS16090 PF09364 XFP N-terminal domain NIDE_RS16095 PF00871 Acetokinase family NIDE_RS16105 PF06965 Na+/H+ antiporter 1 NIDE_RS16105 PF13462 Thioredoxin NIDE_RS16115 PF02954 Bacterial regulatory protein, Fis family NIDE_RS16115 PF00158 Sigma-54 interaction domain NIDE_RS16115 PF00072 Response regulator receiver domain NIDE_RS16120 PF02743 Cache domain NIDE_RS16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS16120 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS16135 PF07715 TonB-dependent Receptor Plug Domain NIDE_RS16135 PF00593 TonB dependent receptor NIDE_RS16150 PF00873 AcrB/AcrD/AcrF family NIDE_RS16155 PF00873 AcrB/AcrD/AcrF family NIDE_RS16160 PF13533 Biotin-lipoyl like NIDE_RS16165 PF03466 LysR substrate binding domain NIDE_RS16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIDE_RS16175 PF03475 3-alpha domain NIDE_RS16175 PF03473 MOSC domain NIDE_RS16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS16190 PF00072 Response regulator receiver domain NIDE_RS16195 PF12833 Helix-turn-helix domain NIDE_RS16195 PF02805 Metal binding domain of Ada NIDE_RS16195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIDE_RS16195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIDE_RS16230 PF00589 Phage integrase family NIDE_RS16240 PF00709 Adenylosuccinate synthetase NIDE_RS16250 PF12848 ABC transporter NIDE_RS16250 PF16326 ABC transporter C-terminal domain NIDE_RS16250 PF00005 ABC transporter NIDE_RS16260 PF16193 AAA C-terminal domain NIDE_RS16260 PF12002 MgsA AAA+ ATPase C terminal NIDE_RS16260 PF00004 ATPase family associated with various cellular activities (AAA) NIDE_RS16265 PF12146 Serine aminopeptidase, S33 NIDE_RS16270 PF01227 GTP cyclohydrolase I NIDE_RS16280 PF01521 Iron-sulphur cluster biosynthesis NIDE_RS16285 PF00111 2Fe-2S iron-sulfur cluster binding domain NIDE_RS16290 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIDE_RS16290 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIDE_RS16290 PF10531 SLBB domain NIDE_RS16300 PF00056 lactate/malate dehydrogenase, NAD binding domain NIDE_RS16300 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIDE_RS16310 PF00092 von Willebrand factor type A domain NIDE_RS16330 PF02594 Uncharacterised ACR, YggU family COG1872 NIDE_RS16335 PF08406 CbbQ/NirQ/NorQ C-terminal NIDE_RS16335 PF07728 AAA domain (dynein-related subfamily) NIDE_RS16360 PF04055 Radical SAM superfamily NIDE_RS16360 PF12544 Lysine-2,3-aminomutase NIDE_RS16365 PF00692 dUTPase NIDE_RS16375 PF00535 Glycosyl transferase family 2 NIDE_RS16390 PF01040 UbiA prenyltransferase family NIDE_RS16395 PF00462 Glutaredoxin NIDE_RS16410 PF02954 Bacterial regulatory protein, Fis family NIDE_RS16410 PF00072 Response regulator receiver domain NIDE_RS16410 PF00158 Sigma-54 interaction domain NIDE_RS16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS16420 PF08447 PAS fold NIDE_RS16420 PF08448 PAS fold NIDE_RS16430 PF01594 AI-2E family transporter NIDE_RS16440 PF00912 Transglycosylase NIDE_RS16440 PF00905 Penicillin binding protein transpeptidase domain NIDE_RS16440 PF14814 Bifunctional transglycosylase second domain NIDE_RS16490 PF13409 Glutathione S-transferase, N-terminal domain NIDE_RS16495 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIDE_RS16495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIDE_RS16500 PF00072 Response regulator receiver domain NIDE_RS16500 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS16510 PF00106 short chain dehydrogenase NIDE_RS16570 PF00999 Sodium/hydrogen exchanger family NIDE_RS16595 PF08713 DNA alkylation repair enzyme NIDE_RS16600 PF01253 Translation initiation factor SUI1 NIDE_RS16605 PF07152 YaeQ protein NIDE_RS16610 PF09905 DNA-binding protein VF530 NIDE_RS16625 PF16658 Class II release factor RF3, C-terminal domain NIDE_RS16625 PF03144 Elongation factor Tu domain 2 NIDE_RS16625 PF00009 Elongation factor Tu GTP binding domain NIDE_RS16635 PF04851 Type III restriction enzyme, res subunit NIDE_RS16640 PF00271 Helicase conserved C-terminal domain NIDE_RS16640 PF00270 DEAD/DEAH box helicase NIDE_RS16640 PF03880 DbpA RNA binding domain NIDE_RS16645 PF00719 Inorganic pyrophosphatase NIDE_RS16650 PF00571 CBS domain NIDE_RS16650 PF00478 IMP dehydrogenase / GMP reductase domain NIDE_RS16665 PF13545 Crp-like helix-turn-helix domain NIDE_RS16665 PF00027 Cyclic nucleotide-binding domain NIDE_RS16705 PF01541 GIY-YIG catalytic domain NIDE_RS16735 PF07690 Major Facilitator Superfamily NIDE_RS16765 PF07669 Eco57I restriction-modification methylase NIDE_RS16765 PF12950 TaqI-like C-terminal specificity domain NIDE_RS16770 PF04555 Restriction endonuclease XhoI NIDE_RS16785 PF01569 PAP2 superfamily NIDE_RS16810 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS16835 PF04542 Sigma-70 region 2 NIDE_RS16835 PF04545 Sigma-70, region 4 NIDE_RS16840 PF01152 Bacterial-like globin NIDE_RS16850 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIDE_RS16905 PF01022 Bacterial regulatory protein, arsR family NIDE_RS16915 PF01384 Phosphate transporter family NIDE_RS16925 PF00355 Rieske [2Fe-2S] domain NIDE_RS16930 PF01568 Molydopterin dinucleotide binding domain NIDE_RS16930 PF18465 Rieske 3Fe-4S NIDE_RS16930 PF00384 Molybdopterin oxidoreductase NIDE_RS16940 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIDE_RS16945 PF01758 Sodium Bile acid symporter family NIDE_RS16950 PF13847 Methyltransferase domain NIDE_RS16955 PF01022 Bacterial regulatory protein, arsR family NIDE_RS16960 PF01145 SPFH domain / Band 7 family NIDE_RS16965 PF01145 SPFH domain / Band 7 family NIDE_RS16970 PF01268 Formate--tetrahydrofolate ligase NIDE_RS16975 PF01551 Peptidase family M23 NIDE_RS16975 PF08525 Opacity-associated protein A N-terminal motif NIDE_RS16975 PF01476 LysM domain NIDE_RS16985 PF00581 Rhodanese-like domain NIDE_RS16990 PF16363 GDP-mannose 4,6 dehydratase NIDE_RS16995 PF01728 FtsJ-like methyltransferase NIDE_RS16995 PF01479 S4 domain NIDE_RS17000 PF02609 Exonuclease VII small subunit NIDE_RS17005 PF02601 Exonuclease VII, large subunit NIDE_RS17005 PF13742 OB-fold nucleic acid binding domain NIDE_RS17010 PF13277 YmdB-like protein NIDE_RS17015 PF01966 HD domain NIDE_RS17015 PF00013 KH domain NIDE_RS17015 PF12072 Domain of unknown function (DUF3552) NIDE_RS17030 PF01464 Transglycosylase SLT domain NIDE_RS17030 PF14718 Soluble lytic murein transglycosylase L domain NIDE_RS17035 PF04055 Radical SAM superfamily NIDE_RS17040 PF00675 Insulinase (Peptidase family M16) NIDE_RS17040 PF05193 Peptidase M16 inactive domain NIDE_RS17045 PF05193 Peptidase M16 inactive domain NIDE_RS17045 PF00675 Insulinase (Peptidase family M16) NIDE_RS17050 PF02540 NAD synthase NIDE_RS17055 PF00430 ATP synthase B/B' CF(0) NIDE_RS17060 PF00137 ATP synthase subunit C NIDE_RS17065 PF00119 ATP synthase A chain NIDE_RS17075 PF04715 Anthranilate synthase component I, N terminal region NIDE_RS17075 PF00425 chorismate binding enzyme NIDE_RS17080 PF01063 Amino-transferase class IV NIDE_RS17085 PF01464 Transglycosylase SLT domain NIDE_RS17090 PF00890 FAD binding domain NIDE_RS17090 PF02910 Fumarate reductase flavoprotein C-term NIDE_RS17105 PF00664 ABC transporter transmembrane region NIDE_RS17105 PF00005 ABC transporter NIDE_RS17110 PF04185 Phosphoesterase family NIDE_RS17115 PF00690 Cation transporter/ATPase, N-terminus NIDE_RS17115 PF00689 Cation transporting ATPase, C-terminus NIDE_RS17140 PF01699 Sodium/calcium exchanger protein NIDE_RS17145 PF08448 PAS fold NIDE_RS17145 PF00072 Response regulator receiver domain NIDE_RS17145 PF13188 PAS domain NIDE_RS17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS17145 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS17150 PF00689 Cation transporting ATPase, C-terminus NIDE_RS17150 PF00690 Cation transporter/ATPase, N-terminus NIDE_RS17155 PF00873 AcrB/AcrD/AcrF family NIDE_RS17165 PF00582 Universal stress protein family NIDE_RS17170 PF13673 Acetyltransferase (GNAT) domain NIDE_RS17185 PF13683 Integrase core domain NIDE_RS17185 PF13276 HTH-like domain NIDE_RS17210 PF00128 Alpha amylase, catalytic domain NIDE_RS17210 PF02806 Alpha amylase, C-terminal all-beta domain NIDE_RS17210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NIDE_RS17230 PF13654 AAA domain NIDE_RS17230 PF05362 Lon protease (S16) C-terminal proteolytic domain NIDE_RS17240 PF00857 Isochorismatase family NIDE_RS17245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIDE_RS17245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIDE_RS17260 PF00083 Sugar (and other) transporter NIDE_RS17270 PF01743 Poly A polymerase head domain NIDE_RS17270 PF00571 CBS domain NIDE_RS17280 PF00582 Universal stress protein family NIDE_RS17285 PF00690 Cation transporter/ATPase, N-terminus NIDE_RS17285 PF00689 Cation transporting ATPase, C-terminus NIDE_RS17300 PF03741 Integral membrane protein TerC family NIDE_RS17305 PF13847 Methyltransferase domain NIDE_RS17325 PF16864 Dimerisation domain NIDE_RS17325 PF00891 O-methyltransferase domain NIDE_RS17335 PF02525 Flavodoxin-like fold NIDE_RS17365 PF00005 ABC transporter NIDE_RS17370 PF01458 Uncharacterized protein family (UPF0051) NIDE_RS17415 PF09587 Bacterial capsule synthesis protein PGA_cap NIDE_RS17430 PF01161 Phosphatidylethanolamine-binding protein NIDE_RS17435 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain NIDE_RS17505 PF00582 Universal stress protein family NIDE_RS17520 PF01381 Helix-turn-helix NIDE_RS17530 PF00390 Malic enzyme, N-terminal domain NIDE_RS17530 PF03949 Malic enzyme, NAD binding domain NIDE_RS17535 PF02811 PHP domain NIDE_RS17535 PF14716 Helix-hairpin-helix domain NIDE_RS17535 PF14791 DNA polymerase beta thumb NIDE_RS17555 PF00501 AMP-binding enzyme NIDE_RS17555 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS17560 PF00676 Dehydrogenase E1 component NIDE_RS17565 PF00364 Biotin-requiring enzyme NIDE_RS17565 PF02780 Transketolase, C-terminal domain NIDE_RS17565 PF02779 Transketolase, pyrimidine binding domain NIDE_RS17570 PF02817 e3 binding domain NIDE_RS17570 PF00364 Biotin-requiring enzyme NIDE_RS17570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIDE_RS17575 PF00550 Phosphopantetheine attachment site NIDE_RS17585 PF00011 Hsp20/alpha crystallin family NIDE_RS17590 PF00156 Phosphoribosyl transferase domain NIDE_RS17590 PF05139 Erythromycin esterase NIDE_RS17605 PF00582 Universal stress protein family NIDE_RS17620 PF13380 CoA binding domain NIDE_RS17620 PF13607 Succinyl-CoA ligase like flavodoxin domain NIDE_RS17655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIDE_RS17660 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NIDE_RS17660 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NIDE_RS17675 PF00085 Thioredoxin NIDE_RS17685 PF03976 Polyphosphate kinase 2 (PPK2) NIDE_RS17705 PF00174 Oxidoreductase molybdopterin binding domain NIDE_RS17715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NIDE_RS17730 PF00033 Cytochrome b/b6/petB NIDE_RS17735 PF01266 FAD dependent oxidoreductase NIDE_RS17735 PF00355 Rieske [2Fe-2S] domain NIDE_RS17760 PF01272 Transcription elongation factor, GreA/GreB, C-term NIDE_RS17760 PF14760 Rnk N-terminus NIDE_RS17765 PF00582 Universal stress protein family NIDE_RS17780 PF11897 Protein of unknown function (DUF3417) NIDE_RS17780 PF00343 Carbohydrate phosphorylase NIDE_RS17785 PF00534 Glycosyl transferases group 1 NIDE_RS17805 PF00005 ABC transporter NIDE_RS17810 PF02405 Permease MlaE NIDE_RS17845 PF00873 AcrB/AcrD/AcrF family NIDE_RS17850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS17850 PF00529 HlyD membrane-fusion protein of T1SS NIDE_RS17865 PF01925 Sulfite exporter TauE/SafE NIDE_RS17890 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS17920 PF00027 Cyclic nucleotide-binding domain NIDE_RS17920 PF00325 Bacterial regulatory proteins, crp family NIDE_RS17925 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS17930 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS17945 PF00158 Sigma-54 interaction domain NIDE_RS17945 PF00072 Response regulator receiver domain NIDE_RS17945 PF02954 Bacterial regulatory protein, Fis family NIDE_RS17950 PF00072 Response regulator receiver domain NIDE_RS17950 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS17955 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS17955 PF00989 PAS fold NIDE_RS17955 PF08447 PAS fold NIDE_RS17960 PF02954 Bacterial regulatory protein, Fis family NIDE_RS17960 PF00072 Response regulator receiver domain NIDE_RS17960 PF00158 Sigma-54 interaction domain NIDE_RS17965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIDE_RS17970 PF00005 ABC transporter NIDE_RS17970 PF12704 MacB-like periplasmic core domain NIDE_RS17970 PF02687 FtsX-like permease family NIDE_RS17975 PF00999 Sodium/hydrogen exchanger family NIDE_RS17990 PF04055 Radical SAM superfamily NIDE_RS17990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NIDE_RS17995 PF00364 Biotin-requiring enzyme NIDE_RS17995 PF02817 e3 binding domain NIDE_RS17995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIDE_RS18000 PF02780 Transketolase, C-terminal domain NIDE_RS18000 PF02779 Transketolase, pyrimidine binding domain NIDE_RS18005 PF00676 Dehydrogenase E1 component NIDE_RS18020 PF02545 Maf-like protein NIDE_RS18035 PF05114 Protein of unknown function (DUF692) NIDE_RS18060 PF00072 Response regulator receiver domain NIDE_RS18060 PF08448 PAS fold NIDE_RS18060 PF13188 PAS domain NIDE_RS18060 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS18065 PF02222 ATP-grasp domain NIDE_RS18065 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIDE_RS18070 PF00731 AIR carboxylase NIDE_RS18085 PF00005 ABC transporter NIDE_RS18090 PF00005 ABC transporter NIDE_RS18090 PF00664 ABC transporter transmembrane region NIDE_RS18100 PF00849 RNA pseudouridylate synthase NIDE_RS18100 PF01479 S4 domain NIDE_RS18105 PF00491 Arginase family NIDE_RS18110 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) NIDE_RS18115 PF00171 Aldehyde dehydrogenase family NIDE_RS18125 PF06965 Na+/H+ antiporter 1 NIDE_RS18125 PF13462 Thioredoxin NIDE_RS18130 PF01916 Deoxyhypusine synthase NIDE_RS18155 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS18155 PF00072 Response regulator receiver domain NIDE_RS18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS18160 PF07730 Histidine kinase NIDE_RS18170 PF03354 Phage Terminase NIDE_RS18295 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIDE_RS18295 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIDE_RS18305 PF16326 ABC transporter C-terminal domain NIDE_RS18305 PF00005 ABC transporter NIDE_RS18305 PF12848 ABC transporter NIDE_RS18320 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIDE_RS18325 PF00970 Oxidoreductase FAD-binding domain NIDE_RS18325 PF00175 Oxidoreductase NAD-binding domain NIDE_RS18330 PF00111 2Fe-2S iron-sulfur cluster binding domain NIDE_RS18335 PF02082 Transcriptional regulator NIDE_RS18340 PF00266 Aminotransferase class-V NIDE_RS18345 PF01592 NifU-like N terminal domain NIDE_RS18350 PF01521 Iron-sulphur cluster biosynthesis NIDE_RS18360 PF00012 Hsp70 protein NIDE_RS18370 PF17092 Penicillin-binding protein OB-like domain NIDE_RS18370 PF00912 Transglycosylase NIDE_RS18370 PF00905 Penicillin binding protein transpeptidase domain NIDE_RS18375 PF00009 Elongation factor Tu GTP binding domain NIDE_RS18375 PF03144 Elongation factor Tu domain 2 NIDE_RS18375 PF00679 Elongation factor G C-terminus NIDE_RS18385 PF00578 AhpC/TSA family NIDE_RS18395 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS18420 PF13183 4Fe-4S dicluster domain NIDE_RS18420 PF02754 Cysteine-rich domain NIDE_RS18430 PF01475 Ferric uptake regulator family NIDE_RS18435 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NIDE_RS18450 PF00216 Bacterial DNA-binding protein NIDE_RS18495 PF03150 Di-haem cytochrome c peroxidase NIDE_RS18505 PF00171 Aldehyde dehydrogenase family NIDE_RS18515 PF04468 PSP1 C-terminal conserved region NIDE_RS18550 PF09382 RQC domain NIDE_RS18550 PF16124 RecQ zinc-binding NIDE_RS18550 PF00570 HRDC domain NIDE_RS18550 PF00271 Helicase conserved C-terminal domain NIDE_RS18550 PF00270 DEAD/DEAH box helicase NIDE_RS18565 PF02416 mttA/Hcf106 family NIDE_RS18570 PF02416 mttA/Hcf106 family NIDE_RS18590 PF00005 ABC transporter NIDE_RS18595 PF00535 Glycosyl transferase family 2 NIDE_RS18605 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NIDE_RS18615 PF04052 TolB amino-terminal domain NIDE_RS18615 PF07676 WD40-like Beta Propeller Repeat NIDE_RS18625 PF02954 Bacterial regulatory protein, Fis family NIDE_RS18625 PF00158 Sigma-54 interaction domain NIDE_RS18625 PF00072 Response regulator receiver domain NIDE_RS18630 PF00448 SRP54-type protein, GTPase domain NIDE_RS18630 PF02881 SRP54-type protein, helical bundle domain NIDE_RS18635 PF02130 Uncharacterized protein family UPF0054 NIDE_RS18640 PF02562 PhoH-like protein NIDE_RS18680 PF00437 Type II/IV secretion system protein NIDE_RS18680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIDE_RS18705 PF01478 Type IV leader peptidase family NIDE_RS18705 PF06750 Bacterial Peptidase A24 N-terminal domain NIDE_RS18710 PF00072 Response regulator receiver domain NIDE_RS18710 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS18715 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIDE_RS18715 PF00588 SpoU rRNA Methylase family NIDE_RS18720 PF09190 DALR domain NIDE_RS18720 PF01406 tRNA synthetases class I (C) catalytic domain NIDE_RS18725 PF09335 SNARE associated Golgi protein NIDE_RS18730 PF01975 Survival protein SurE NIDE_RS18745 PF00216 Bacterial DNA-binding protein NIDE_RS18750 PF00682 HMGL-like NIDE_RS18750 PF08502 LeuA allosteric (dimerisation) domain NIDE_RS18755 PF00696 Amino acid kinase family NIDE_RS18755 PF13840 ACT domain NIDE_RS18755 PF01842 ACT domain NIDE_RS18760 PF01676 Metalloenzyme superfamily NIDE_RS18760 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase NIDE_RS18765 PF00291 Pyridoxal-phosphate dependent enzyme NIDE_RS18770 PF03447 Homoserine dehydrogenase, NAD binding domain NIDE_RS18770 PF00742 Homoserine dehydrogenase NIDE_RS18770 PF01842 ACT domain NIDE_RS18775 PF00155 Aminotransferase class I and II NIDE_RS18780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIDE_RS18785 PF03853 YjeF-related protein N-terminus NIDE_RS18785 PF01256 Carbohydrate kinase NIDE_RS18790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIDE_RS18800 PF00488 MutS domain V NIDE_RS18800 PF05188 MutS domain II NIDE_RS18800 PF05190 MutS family domain IV NIDE_RS18800 PF01624 MutS domain I NIDE_RS18800 PF05192 MutS domain III NIDE_RS18815 PF05193 Peptidase M16 inactive domain NIDE_RS18815 PF00675 Insulinase (Peptidase family M16) NIDE_RS18820 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIDE_RS18820 PF00013 KH domain NIDE_RS18820 PF03725 3' exoribonuclease family, domain 2 NIDE_RS18820 PF01138 3' exoribonuclease family, domain 1 NIDE_RS18820 PF00575 S1 RNA binding domain NIDE_RS18825 PF00312 Ribosomal protein S15 NIDE_RS18830 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIDE_RS18830 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIDE_RS18835 PF02033 Ribosome-binding factor A NIDE_RS18840 PF04456 Protein of unknown function (DUF503) NIDE_RS18845 PF00009 Elongation factor Tu GTP binding domain NIDE_RS18845 PF11987 Translation-initiation factor 2 NIDE_RS18845 PF04760 Translation initiation factor IF-2, N-terminal region NIDE_RS18850 PF08529 NusA N-terminal domain NIDE_RS18850 PF13184 NusA-like KH domain NIDE_RS18850 PF00575 S1 RNA binding domain NIDE_RS18855 PF17384 RimP C-terminal SH3 domain NIDE_RS18855 PF02576 RimP N-terminal domain NIDE_RS18860 PF01063 Amino-transferase class IV NIDE_RS18880 PF00037 4Fe-4S binding domain NIDE_RS18905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIDE_RS18905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIDE_RS18905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIDE_RS18970 PF00476 DNA polymerase family A NIDE_RS18970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIDE_RS18970 PF01367 5'-3' exonuclease, C-terminal SAM fold NIDE_RS18970 PF01612 3'-5' exonuclease NIDE_RS18990 PF10576 Iron-sulfur binding domain of endonuclease III NIDE_RS18990 PF00633 Helix-hairpin-helix motif NIDE_RS18990 PF00730 HhH-GPD superfamily base excision DNA repair protein NIDE_RS18995 PF01165 Ribosomal protein S21 NIDE_RS19000 PF07837 Formiminotransferase domain, N-terminal subdomain NIDE_RS19000 PF02971 Formiminotransferase domain NIDE_RS19005 PF00581 Rhodanese-like domain NIDE_RS19005 PF01206 Sulfurtransferase TusA NIDE_RS19010 PF13686 DsrE/DsrF/DrsH-like family NIDE_RS19015 PF00355 Rieske [2Fe-2S] domain NIDE_RS19020 PF00999 Sodium/hydrogen exchanger family NIDE_RS19020 PF02080 TrkA-C domain NIDE_RS19020 PF02254 TrkA-N domain NIDE_RS19035 PF01370 NAD dependent epimerase/dehydratase family NIDE_RS19050 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS19065 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS19075 PF04264 YceI-like domain NIDE_RS19085 PF00107 Zinc-binding dehydrogenase NIDE_RS19085 PF08240 Alcohol dehydrogenase GroES-like domain NIDE_RS19090 PF00155 Aminotransferase class I and II NIDE_RS19095 PF04333 MlaA lipoprotein NIDE_RS19100 PF12146 Serine aminopeptidase, S33 NIDE_RS19145 PF17151 Periplasmic sensor domain NIDE_RS19145 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS19195 PF00535 Glycosyl transferase family 2 NIDE_RS19260 PF00239 Resolvase, N terminal domain NIDE_RS19260 PF02796 Helix-turn-helix domain of resolvase NIDE_RS19280 PF03796 DnaB-like helicase C terminal domain NIDE_RS19280 PF00772 DnaB-like helicase N terminal domain NIDE_RS19305 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIDE_RS19310 PF01649 Ribosomal protein S20 NIDE_RS19325 PF08264 Anticodon-binding domain of tRNA NIDE_RS19325 PF09334 tRNA synthetases class I (M) NIDE_RS19325 PF13603 Leucyl-tRNA synthetase, Domain 2 NIDE_RS19325 PF00133 tRNA synthetases class I (I, L, M and V) NIDE_RS19330 PF01209 ubiE/COQ5 methyltransferase family NIDE_RS19340 PF13419 Haloacid dehalogenase-like hydrolase NIDE_RS19345 PF01926 50S ribosome-binding GTPase NIDE_RS19345 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIDE_RS19360 PF08281 Sigma-70, region 4 NIDE_RS19360 PF04542 Sigma-70 region 2 NIDE_RS19390 PF08240 Alcohol dehydrogenase GroES-like domain NIDE_RS19390 PF00107 Zinc-binding dehydrogenase NIDE_RS19395 PF07732 Multicopper oxidase NIDE_RS19400 PF07687 Peptidase dimerisation domain NIDE_RS19400 PF01546 Peptidase family M20/M25/M40 NIDE_RS19410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIDE_RS19410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIDE_RS19425 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIDE_RS19430 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIDE_RS19430 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIDE_RS19430 PF00374 Nickel-dependent hydrogenase NIDE_RS19435 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIDE_RS19435 PF00361 Proton-conducting membrane transporter NIDE_RS19445 PF00146 NADH dehydrogenase NIDE_RS19450 PF00361 Proton-conducting membrane transporter NIDE_RS19470 PF02954 Bacterial regulatory protein, Fis family NIDE_RS19470 PF00072 Response regulator receiver domain NIDE_RS19470 PF00158 Sigma-54 interaction domain NIDE_RS19475 PF00989 PAS fold NIDE_RS19475 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS19480 PF00005 ABC transporter NIDE_RS19480 PF00664 ABC transporter transmembrane region NIDE_RS19510 PF00753 Metallo-beta-lactamase superfamily NIDE_RS19515 PF05193 Peptidase M16 inactive domain NIDE_RS19520 PF05193 Peptidase M16 inactive domain NIDE_RS19520 PF00675 Insulinase (Peptidase family M16) NIDE_RS19525 PF13419 Haloacid dehalogenase-like hydrolase NIDE_RS19535 PF02887 Pyruvate kinase, alpha/beta domain NIDE_RS19535 PF00224 Pyruvate kinase, barrel domain NIDE_RS19535 PF00391 PEP-utilising enzyme, mobile domain NIDE_RS19540 PF00365 Phosphofructokinase NIDE_RS19565 PF00202 Aminotransferase class-III NIDE_RS19595 PF13302 Acetyltransferase (GNAT) domain NIDE_RS19630 PF03061 Thioesterase superfamily NIDE_RS19650 PF01145 SPFH domain / Band 7 family NIDE_RS19655 PF13580 SIS domain NIDE_RS19670 PF00817 impB/mucB/samB family NIDE_RS19670 PF11799 impB/mucB/samB family C-terminal domain NIDE_RS19670 PF11798 IMS family HHH motif NIDE_RS19675 PF01467 Cytidylyltransferase-like NIDE_RS19675 PF00294 pfkB family carbohydrate kinase NIDE_RS19680 PF02559 CarD-like/TRCF domain NIDE_RS19680 PF00270 DEAD/DEAH box helicase NIDE_RS19680 PF17757 UvrB interaction domain NIDE_RS19680 PF03461 TRCF domain NIDE_RS19680 PF00271 Helicase conserved C-terminal domain NIDE_RS19695 PF09312 SurA N-terminal domain NIDE_RS19695 PF00639 PPIC-type PPIASE domain NIDE_RS19700 PF01926 50S ribosome-binding GTPase NIDE_RS19705 PF00912 Transglycosylase NIDE_RS19715 PF01112 Asparaginase NIDE_RS19725 PF02580 D-Tyr-tRNA(Tyr) deacylase NIDE_RS19730 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIDE_RS19730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIDE_RS19735 PF03023 Lipid II flippase MurJ NIDE_RS19755 PF04011 LemA family NIDE_RS19770 PF03372 Endonuclease/Exonuclease/phosphatase family NIDE_RS19800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIDE_RS19800 PF00403 Heavy-metal-associated domain NIDE_RS19800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIDE_RS19825 PF00330 Aconitase family (aconitate hydratase) NIDE_RS19830 PF00694 Aconitase C-terminal domain NIDE_RS19840 PF01544 CorA-like Mg2+ transporter protein NIDE_RS19845 PF00459 Inositol monophosphatase family NIDE_RS19860 PF00155 Aminotransferase class I and II NIDE_RS19865 PF01464 Transglycosylase SLT domain NIDE_RS19880 PF13380 CoA binding domain NIDE_RS19885 PF01625 Peptide methionine sulfoxide reductase NIDE_RS19900 PF03551 Transcriptional regulator PadR-like family NIDE_RS19900 PF13847 Methyltransferase domain NIDE_RS19945 PF04321 RmlD substrate binding domain NIDE_RS19960 PF00005 ABC transporter NIDE_RS19960 PF12848 ABC transporter NIDE_RS19980 PF02230 Phospholipase/Carboxylesterase NIDE_RS19990 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIDE_RS19995 PF10057 Uncharacterized conserved protein (DUF2294) NIDE_RS20000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIDE_RS20000 PF00361 Proton-conducting membrane transporter NIDE_RS20000 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus NIDE_RS20010 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) NIDE_RS20050 PF13393 Histidyl-tRNA synthetase NIDE_RS20050 PF03129 Anticodon binding domain NIDE_RS20085 PF05384 Sensor protein DegS NIDE_RS20085 PF07730 Histidine kinase NIDE_RS20085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20105 PF05860 haemagglutination activity domain NIDE_RS20115 PF00360 Phytochrome region NIDE_RS20115 PF08446 PAS fold NIDE_RS20115 PF01590 GAF domain NIDE_RS20115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20115 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20120 PF12838 4Fe-4S dicluster domain NIDE_RS20125 PF00691 OmpA family NIDE_RS20125 PF13677 Membrane MotB of proton-channel complex MotA/MotB NIDE_RS20145 PF00691 OmpA family NIDE_RS20145 PF04972 BON domain NIDE_RS20160 PF02527 rRNA small subunit methyltransferase G NIDE_RS20165 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS20165 PF00563 EAL domain NIDE_RS20165 PF03707 Bacterial signalling protein N terminal repeat NIDE_RS20170 PF00072 Response regulator receiver domain NIDE_RS20170 PF02954 Bacterial regulatory protein, Fis family NIDE_RS20170 PF00158 Sigma-54 interaction domain NIDE_RS20175 PF00691 OmpA family NIDE_RS20185 PF00072 Response regulator receiver domain NIDE_RS20185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20185 PF13426 PAS domain NIDE_RS20190 PF01627 Hpt domain NIDE_RS20190 PF00072 Response regulator receiver domain NIDE_RS20190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20190 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20190 PF00672 HAMP domain NIDE_RS20195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20195 PF00672 HAMP domain NIDE_RS20195 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20195 PF01627 Hpt domain NIDE_RS20195 PF00072 Response regulator receiver domain NIDE_RS20195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20200 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS20200 PF03472 Autoinducer binding domain NIDE_RS20210 PF03544 Gram-negative bacterial TonB protein C-terminal NIDE_RS20215 PF07963 Prokaryotic N-terminal methylation motif NIDE_RS20215 PF08334 Type II secretion system (T2SS), protein G NIDE_RS20220 PF08448 PAS fold NIDE_RS20220 PF13188 PAS domain NIDE_RS20220 PF00072 Response regulator receiver domain NIDE_RS20220 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20225 PF08362 YcdC-like protein, C-terminal region NIDE_RS20225 PF00440 Bacterial regulatory proteins, tetR family NIDE_RS20240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20240 PF00072 Response regulator receiver domain NIDE_RS20240 PF00672 HAMP domain NIDE_RS20240 PF01627 Hpt domain NIDE_RS20240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20240 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20245 PF00672 HAMP domain NIDE_RS20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20245 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20245 PF01627 Hpt domain NIDE_RS20245 PF00072 Response regulator receiver domain NIDE_RS20255 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20255 PF01627 Hpt domain NIDE_RS20255 PF00072 Response regulator receiver domain NIDE_RS20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20255 PF00672 HAMP domain NIDE_RS20255 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20280 PF07730 Histidine kinase NIDE_RS20280 PF17200 Single Cache domain 2 NIDE_RS20285 PF00691 OmpA family NIDE_RS20290 PF00158 Sigma-54 interaction domain NIDE_RS20290 PF00072 Response regulator receiver domain NIDE_RS20290 PF02954 Bacterial regulatory protein, Fis family NIDE_RS20300 PF00072 Response regulator receiver domain NIDE_RS20315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIDE_RS20315 PF01627 Hpt domain NIDE_RS20315 PF00072 Response regulator receiver domain NIDE_RS20315 PF00672 HAMP domain NIDE_RS20315 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20320 PF00072 Response regulator receiver domain NIDE_RS20320 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS20330 PF03781 Sulfatase-modifying factor enzyme 1 NIDE_RS20330 PF00069 Protein kinase domain NIDE_RS20335 PF01556 DnaJ C terminal domain NIDE_RS20335 PF00226 DnaJ domain NIDE_RS20335 PF00684 DnaJ central domain NIDE_RS20345 PF00582 Universal stress protein family NIDE_RS20355 PF03330 Lytic transglycolase NIDE_RS20355 PF05036 Sporulation related domain NIDE_RS20360 PF00573 Ribosomal protein L4/L1 family NIDE_RS20370 PF00263 Bacterial type II and III secretion system protein NIDE_RS20370 PF07660 Secretin and TonB N terminus short domain NIDE_RS20370 PF03958 Bacterial type II/III secretion system short domain NIDE_RS20370 PF11741 AMIN domain NIDE_RS20380 PF00578 AhpC/TSA family NIDE_RS20390 PF04079 Segregation and condensation complex subunit ScpB NIDE_RS20415 PF17200 Single Cache domain 2 NIDE_RS20415 PF07730 Histidine kinase NIDE_RS20420 PF08446 PAS fold NIDE_RS20420 PF01590 GAF domain NIDE_RS20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20420 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20420 PF00360 Phytochrome region NIDE_RS20425 PF00069 Protein kinase domain NIDE_RS20425 PF03793 PASTA domain NIDE_RS20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20435 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20440 PF02806 Alpha amylase, C-terminal all-beta domain NIDE_RS20440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NIDE_RS20445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NIDE_RS20445 PF02806 Alpha amylase, C-terminal all-beta domain NIDE_RS20445 PF00128 Alpha amylase, catalytic domain NIDE_RS20480 PF00271 Helicase conserved C-terminal domain NIDE_RS20480 PF08148 DSHCT (NUC185) domain NIDE_RS20480 PF00270 DEAD/DEAH box helicase NIDE_RS20490 PF18818 Metallopeptidase superfamily domain NIDE_RS20490 PF08401 Domain of unknown function (DUF1738) NIDE_RS20500 PF00582 Universal stress protein family NIDE_RS20535 PF00069 Protein kinase domain NIDE_RS20535 PF03793 PASTA domain NIDE_RS20540 PF00069 Protein kinase domain NIDE_RS20540 PF03793 PASTA domain NIDE_RS20550 PF14824 Sirohaem biosynthesis protein central NIDE_RS20550 PF10414 Sirohaem synthase dimerisation region NIDE_RS20550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIDE_RS20565 PF00668 Condensation domain NIDE_RS20565 PF13193 AMP-binding enzyme C-terminal domain NIDE_RS20565 PF00550 Phosphopantetheine attachment site NIDE_RS20565 PF00501 AMP-binding enzyme NIDE_RS20570 PF02311 AraC-like ligand binding domain NIDE_RS20570 PF12833 Helix-turn-helix domain NIDE_RS20585 PF13847 Methyltransferase domain NIDE_RS20615 PF01738 Dienelactone hydrolase family NIDE_RS20620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20620 PF00672 HAMP domain NIDE_RS20620 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20620 PF13426 PAS domain NIDE_RS20625 PF00483 Nucleotidyl transferase NIDE_RS20630 PF00535 Glycosyl transferase family 2 NIDE_RS20630 PF00534 Glycosyl transferases group 1 NIDE_RS20635 PF13426 PAS domain NIDE_RS20635 PF08447 PAS fold NIDE_RS20635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIDE_RS20640 PF00535 Glycosyl transferase family 2 NIDE_RS20645 PF00534 Glycosyl transferases group 1 NIDE_RS20650 PF00953 Glycosyl transferase family 4 NIDE_RS20660 PF03190 Protein of unknown function, DUF255 NIDE_RS20700 PF00072 Response regulator receiver domain NIDE_RS20705 PF00072 Response regulator receiver domain NIDE_RS20705 PF00486 Transcriptional regulatory protein, C terminal NIDE_RS20710 PF00672 HAMP domain NIDE_RS20710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIDE_RS20720 PF00534 Glycosyl transferases group 1 NIDE_RS20720 PF13439 Glycosyltransferase Family 4 NIDE_RS20735 PF00072 Response regulator receiver domain NIDE_RS20735 PF00196 Bacterial regulatory proteins, luxR family NIDE_RS20745 PF13439 Glycosyltransferase Family 4 NIDE_RS20750 PF01171 PP-loop family NIDE_RS20750 PF11734 TilS substrate C-terminal domain NIDE_RS20760 PF13439 Glycosyltransferase Family 4 NIDE_RS20760 PF00534 Glycosyl transferases group 1 NIDE_RS20770 PF09115 DNA polymerase III, delta subunit, C terminal NIDE_RS20775 PF01569 PAP2 superfamily NIDE_RS20805 PF00535 Glycosyl transferase family 2 NIDE_RS20815 PF08448 PAS fold NIDE_RS20815 PF13188 PAS domain NIDE_RS20815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20815 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20815 PF00072 Response regulator receiver domain NIDE_RS20825 PF01551 Peptidase family M23 NIDE_RS20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20830 PF07730 Histidine kinase NIDE_RS20840 PF00360 Phytochrome region NIDE_RS20840 PF08446 PAS fold NIDE_RS20840 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20840 PF01590 GAF domain NIDE_RS20850 PF00226 DnaJ domain NIDE_RS20850 PF01556 DnaJ C terminal domain NIDE_RS20850 PF00684 DnaJ central domain NIDE_RS20885 PF01590 GAF domain NIDE_RS20885 PF00158 Sigma-54 interaction domain NIDE_RS20945 PF08241 Methyltransferase domain NIDE_RS20950 PF07963 Prokaryotic N-terminal methylation motif NIDE_RS20950 PF14245 Type IV pilin PilA NIDE_RS20955 PF14245 Type IV pilin PilA NIDE_RS20955 PF07963 Prokaryotic N-terminal methylation motif NIDE_RS20960 PF00989 PAS fold NIDE_RS20960 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20970 PF00072 Response regulator receiver domain NIDE_RS20970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20970 PF08448 PAS fold NIDE_RS20970 PF13188 PAS domain NIDE_RS20970 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20980 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20985 PF13188 PAS domain NIDE_RS20985 PF08448 PAS fold NIDE_RS20985 PF00072 Response regulator receiver domain NIDE_RS20985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS20985 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS20995 PF13401 AAA domain NIDE_RS20995 PF01471 Putative peptidoglycan binding domain NIDE_RS21015 PF13847 Methyltransferase domain NIDE_RS21020 PF00313 'Cold-shock' DNA-binding domain NIDE_RS21030 PF00571 CBS domain NIDE_RS21035 PF01380 SIS domain NIDE_RS21035 PF00571 CBS domain NIDE_RS21060 PF13426 PAS domain NIDE_RS21060 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS21060 PF00563 EAL domain NIDE_RS21065 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NIDE_RS21075 PF01207 Dihydrouridine synthase (Dus) NIDE_RS21085 PF07743 HSCB C-terminal oligomerisation domain NIDE_RS21105 PF01569 PAP2 superfamily NIDE_RS21125 PF03707 Bacterial signalling protein N terminal repeat NIDE_RS21125 PF00990 Diguanylate cyclase, GGDEF domain NIDE_RS21125 PF00563 EAL domain NIDE_RS21150 PF00072 Response regulator receiver domain NIDE_RS21150 PF00512 His Kinase A (phospho-acceptor) domain NIDE_RS21150 PF13188 PAS domain NIDE_RS21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIDE_RS21150 PF08448 PAS fold